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Conserved domains on  [gi|2123631606|ref|XP_044455401|]
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transcription factor NIGT1-like isoform X2 [Triticum aestivum]

Protein Classification

Myb family transcription factor( domain architecture ID 11806239)

Myb family transcription factor such as Oryza sativa transcription factor MYBS3, a transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters

CATH:  1.20.58.1880
Gene Ontology:  GO:0003677|GO:0003700|GO:0006355
PubMed:  8882580|34200125|31084451
SCOP:  4000317

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 306-362 1.02e-27

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


:

Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 104.79  E-value: 1.02e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2123631606 306 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHT 362
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57
PLN03162 super family cl26028
golden-2 like transcription factor; Provisional
 238-373 3.37e-11

golden-2 like transcription factor; Provisional


The actual alignment was detected with superfamily member PLN03162:

Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 65.19  E-value: 3.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2123631606 238 PFEKEKQPEPELPASSTTAPASSALVGDSGDKATSDTEVHDKDSKDAtekdtdkdkdkegQSQPPNNRKPRRCWAPELHR 317
Cdd:PLN03162  180 PGNEVGEEEALLLAEAAKATGDVVSASDSGECSSVDRKDNQASPKSC-------------KNAAPGKKKAKVDWTPELHR 246

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2123631606 318 RFLQALQQLGGSHvATPKQIRELMKVDGLTNDEVKSHLQKYRLHTSRRPSSTAQSG 373
Cdd:PLN03162  247 RFVHAVEQLGVEK-AFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAA 301
 
Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 306-362 1.02e-27

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 104.79  E-value: 1.02e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2123631606 306 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHT 362
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57
PLN03162 PLN03162
golden-2 like transcription factor; Provisional
 238-373 3.37e-11

golden-2 like transcription factor; Provisional


Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 65.19  E-value: 3.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2123631606 238 PFEKEKQPEPELPASSTTAPASSALVGDSGDKATSDTEVHDKDSKDAtekdtdkdkdkegQSQPPNNRKPRRCWAPELHR 317
Cdd:PLN03162  180 PGNEVGEEEALLLAEAAKATGDVVSASDSGECSSVDRKDNQASPKSC-------------KNAAPGKKKAKVDWTPELHR 246

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2123631606 318 RFLQALQQLGGSHvATPKQIRELMKVDGLTNDEVKSHLQKYRLHTSRRPSSTAQSG 373
Cdd:PLN03162  247 RFVHAVEQLGVEK-AFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAA 301
 
Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 306-362 1.02e-27

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 104.79  E-value: 1.02e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2123631606 306 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHT 362
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57
PLN03162 PLN03162
golden-2 like transcription factor; Provisional
 238-373 3.37e-11

golden-2 like transcription factor; Provisional


Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 65.19  E-value: 3.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2123631606 238 PFEKEKQPEPELPASSTTAPASSALVGDSGDKATSDTEVHDKDSKDAtekdtdkdkdkegQSQPPNNRKPRRCWAPELHR 317
Cdd:PLN03162  180 PGNEVGEEEALLLAEAAKATGDVVSASDSGECSSVDRKDNQASPKSC-------------KNAAPGKKKAKVDWTPELHR 246

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2123631606 318 RFLQALQQLGGSHvATPKQIRELMKVDGLTNDEVKSHLQKYRLHTSRRPSSTAQSG 373
Cdd:PLN03162  247 RFVHAVEQLGVEK-AFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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