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Conserved domains on  [gi|2217266934|ref|XP_047275196|]
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transmembrane protein 52 isoform X3 [Homo sapiens]

Protein Classification

TMEM52 domain-containing protein( domain architecture ID 10633176)

TMEM52 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TMEM52 pfam14979
Transmembrane 52; This family of transmembrane proteins is found in eukaryotes. Proteins in ...
 55-170 9.55e-61

Transmembrane 52; This family of transmembrane proteins is found in eukaryotes. Proteins in this family are typically between 160 and 236 amino acids in length. There is a conserved LLCG sequence motif. The function of this family is unknown.


:

Pssm-ID: 464418  Cd Length: 148  Bit Score: 186.21  E-value: 9.55e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217266934  55 CGVTAGCVRFCCLRKQAQAQPHLPPARQPCDVAVIPMDSDSPVHSTVTSYSSVQYPLGMRLPLPFGELDLDSMAPPAYSL 134
Cdd:pfam14979  33 CGLTASCVRFCCLRKQAHGQEHGPPAWQPCEVTVIAFDSDSTLHSTVTSYSSVQGPAAMRILAVFHEHDLDSMTPPAYSL 112

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2217266934 135 YTPEPPPSYDEAVKMAKPREEGPALSQKPSPLLGAS 170
Cdd:pfam14979 113 YTPELPPSYEEALKMARTRFEVARPSQKAPDLPPVP 148
 
Name Accession Description Interval E-value
TMEM52 pfam14979
Transmembrane 52; This family of transmembrane proteins is found in eukaryotes. Proteins in ...
 55-170 9.55e-61

Transmembrane 52; This family of transmembrane proteins is found in eukaryotes. Proteins in this family are typically between 160 and 236 amino acids in length. There is a conserved LLCG sequence motif. The function of this family is unknown.


Pssm-ID: 464418  Cd Length: 148  Bit Score: 186.21  E-value: 9.55e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217266934  55 CGVTAGCVRFCCLRKQAQAQPHLPPARQPCDVAVIPMDSDSPVHSTVTSYSSVQYPLGMRLPLPFGELDLDSMAPPAYSL 134
Cdd:pfam14979  33 CGLTASCVRFCCLRKQAHGQEHGPPAWQPCEVTVIAFDSDSTLHSTVTSYSSVQGPAAMRILAVFHEHDLDSMTPPAYSL 112

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2217266934 135 YTPEPPPSYDEAVKMAKPREEGPALSQKPSPLLGAS 170
Cdd:pfam14979 113 YTPELPPSYEEALKMARTRFEVARPSQKAPDLPPVP 148
 
Name Accession Description Interval E-value
TMEM52 pfam14979
Transmembrane 52; This family of transmembrane proteins is found in eukaryotes. Proteins in ...
 55-170 9.55e-61

Transmembrane 52; This family of transmembrane proteins is found in eukaryotes. Proteins in this family are typically between 160 and 236 amino acids in length. There is a conserved LLCG sequence motif. The function of this family is unknown.


Pssm-ID: 464418  Cd Length: 148  Bit Score: 186.21  E-value: 9.55e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217266934  55 CGVTAGCVRFCCLRKQAQAQPHLPPARQPCDVAVIPMDSDSPVHSTVTSYSSVQYPLGMRLPLPFGELDLDSMAPPAYSL 134
Cdd:pfam14979  33 CGLTASCVRFCCLRKQAHGQEHGPPAWQPCEVTVIAFDSDSTLHSTVTSYSSVQGPAAMRILAVFHEHDLDSMTPPAYSL 112

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2217266934 135 YTPEPPPSYDEAVKMAKPREEGPALSQKPSPLLGAS 170
Cdd:pfam14979 113 YTPELPPSYEEALKMARTRFEVARPSQKAPDLPPVP 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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