NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2217296948|ref|XP_047287139|]
View 

uncharacterized protein CCDC197 isoform X1 [Homo sapiens]

Protein Classification

DUF4200 domain-containing protein( domain architecture ID 1000777)

DUF4200 domain-containing protein such as cilia- and flagella-associated protein (CFAP), which is a coiled-coil domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4200 super family cl38441
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ...
 18-59 6.04e-04

Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.


The actual alignment was detected with superfamily member pfam13863:

Pssm-ID: 464003 [Multi-domain]  Cd Length: 119  Bit Score: 38.70  E-value: 6.04e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2217296948  18 KEGDLQGLWQELYQLQAKQKKLKREVEKHKLFEDYLIKVLEK 59
Cdd:pfam13863  78 KEKEIKKLTAQIEELKSEISKLEEKLEEYKPYEDFLEKVVPK 119
 
Name Accession Description Interval E-value
DUF4200 pfam13863
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ...
 18-59 6.04e-04

Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.


Pssm-ID: 464003 [Multi-domain]  Cd Length: 119  Bit Score: 38.70  E-value: 6.04e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2217296948  18 KEGDLQGLWQELYQLQAKQKKLKREVEKHKLFEDYLIKVLEK 59
Cdd:pfam13863  78 KEKEIKKLTAQIEELKSEISKLEEKLEEYKPYEDFLEKVVPK 119
 
Name Accession Description Interval E-value
DUF4200 pfam13863
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ...
 18-59 6.04e-04

Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.


Pssm-ID: 464003 [Multi-domain]  Cd Length: 119  Bit Score: 38.70  E-value: 6.04e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2217296948  18 KEGDLQGLWQELYQLQAKQKKLKREVEKHKLFEDYLIKVLEK 59
Cdd:pfam13863  78 KEKEIKKLTAQIEELKSEISKLEEKLEEYKPYEDFLEKVVPK 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH