NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2217271801|ref|XP_047288891|]
View 

striatin-interacting protein 1 isoform X2 [Homo sapiens]

Protein Classification

FAR11/STRIP family protein( domain architecture ID 10546161)

FAR11/STRIP family protein containing N1221 and DUF3402 domains, similar to vertebrate striatin-interacting proteins and Schizosaccharomyces pombe factor arrest protein 11 that participates in the control of the reentry into the cell cycle following pheromone treatment

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
N1221 pfam07923
N1221-like protein; The sequences featured in this family are similar to a hypothetical ...
 66-336 2.66e-59

N1221-like protein; The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome. This encodes an acidic polypeptide with several possible transmembrane regions.


:

Pssm-ID: 429737  Cd Length: 282  Bit Score: 195.16  E-value: 2.66e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217271801  66 PDLEFEYADTDKWAAELSELYSYTEGPEFLMNRKCFEEDFRiHVTDKKWTELDTNQHRTHAMRLLDGLEVTAREkRLKVA 145
Cdd:pfam07923   1 PAYDFEYADFDSLEEELDEWFSYSDYVLLLGAKKAFESKWS-SFCQKLWTDFDEDYRREFVEKLLEGLESNDEL-RLKAL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217271801 146 RAILYVAQGTFGECSSEAEVQSWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSSAVRKPAISLA--DSTDLRVLLNIM 223
Cdd:pfam07923  79 EALLYISLGTWGETKSSEEQLQWIKRNVKLLAECGGLPTLYEALKKAFEKCRDDIDDDDKAEEQNLqrVSTELFLLLTIL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217271801 224 YLIVETVHQECEGDkaewrtmrQTFRAELGSPlynNEPFAIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTLGGFEE 303
Cdd:pfam07923 159 YFIVEVAREEREND--------ESLRDELISL---EPPLLVFLVKYIAHLRWDSRLSMPIRKIILLLWKLLLLVFGGTSE 227

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2217271801 304 LQSMKAEKRsilglpPLPEDSIKVIRNMRAASP 336
Cdd:pfam07923 228 LKEVKKFLR------ELHGIKDKEKTPLLTASP 254
 
Name Accession Description Interval E-value
N1221 pfam07923
N1221-like protein; The sequences featured in this family are similar to a hypothetical ...
 66-336 2.66e-59

N1221-like protein; The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome. This encodes an acidic polypeptide with several possible transmembrane regions.


Pssm-ID: 429737  Cd Length: 282  Bit Score: 195.16  E-value: 2.66e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217271801  66 PDLEFEYADTDKWAAELSELYSYTEGPEFLMNRKCFEEDFRiHVTDKKWTELDTNQHRTHAMRLLDGLEVTAREkRLKVA 145
Cdd:pfam07923   1 PAYDFEYADFDSLEEELDEWFSYSDYVLLLGAKKAFESKWS-SFCQKLWTDFDEDYRREFVEKLLEGLESNDEL-RLKAL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217271801 146 RAILYVAQGTFGECSSEAEVQSWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSSAVRKPAISLA--DSTDLRVLLNIM 223
Cdd:pfam07923  79 EALLYISLGTWGETKSSEEQLQWIKRNVKLLAECGGLPTLYEALKKAFEKCRDDIDDDDKAEEQNLqrVSTELFLLLTIL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217271801 224 YLIVETVHQECEGDkaewrtmrQTFRAELGSPlynNEPFAIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTLGGFEE 303
Cdd:pfam07923 159 YFIVEVAREEREND--------ESLRDELISL---EPPLLVFLVKYIAHLRWDSRLSMPIRKIILLLWKLLLLVFGGTSE 227

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2217271801 304 LQSMKAEKRsilglpPLPEDSIKVIRNMRAASP 336
Cdd:pfam07923 228 LKEVKKFLR------ELHGIKDKEKTPLLTASP 254
 
Name Accession Description Interval E-value
N1221 pfam07923
N1221-like protein; The sequences featured in this family are similar to a hypothetical ...
 66-336 2.66e-59

N1221-like protein; The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome. This encodes an acidic polypeptide with several possible transmembrane regions.


Pssm-ID: 429737  Cd Length: 282  Bit Score: 195.16  E-value: 2.66e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217271801  66 PDLEFEYADTDKWAAELSELYSYTEGPEFLMNRKCFEEDFRiHVTDKKWTELDTNQHRTHAMRLLDGLEVTAREkRLKVA 145
Cdd:pfam07923   1 PAYDFEYADFDSLEEELDEWFSYSDYVLLLGAKKAFESKWS-SFCQKLWTDFDEDYRREFVEKLLEGLESNDEL-RLKAL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217271801 146 RAILYVAQGTFGECSSEAEVQSWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSSAVRKPAISLA--DSTDLRVLLNIM 223
Cdd:pfam07923  79 EALLYISLGTWGETKSSEEQLQWIKRNVKLLAECGGLPTLYEALKKAFEKCRDDIDDDDKAEEQNLqrVSTELFLLLTIL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217271801 224 YLIVETVHQECEGDkaewrtmrQTFRAELGSPlynNEPFAIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTLGGFEE 303
Cdd:pfam07923 159 YFIVEVAREEREND--------ESLRDELISL---EPPLLVFLVKYIAHLRWDSRLSMPIRKIILLLWKLLLLVFGGTSE 227

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2217271801 304 LQSMKAEKRsilglpPLPEDSIKVIRNMRAASP 336
Cdd:pfam07923 228 LKEVKKFLR------ELHGIKDKEKTPLLTASP 254
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH