|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
32-578 |
3.00e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 3.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 32 ELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEARRAE 111
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAE-------LAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 112 VSELKIEAAKLRQALAREARKVEELQQQQQLAfQEHRLELERVHSDKNGEIDHHREQYENLK----------WTLERKLE 181
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEEL-EEELAELEEELEELEEELEELEEELEEAEeeleeaeaelAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 182 ELDGELALQRQELLLEFESKMR--KREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE 259
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEalRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 260 RKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETfKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLE 339
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 340 LQAHCETLE---AQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAwdAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVA 416
Cdd:COG1196 528 VLIGVEAAYeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR--ATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 417 rSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVV 496
Cdd:COG1196 606 -SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 497 LKAVTLER-DQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQT 575
Cdd:COG1196 685 AERLAEEElELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
...
gi 2217311200 576 AAE 578
Cdd:COG1196 765 LER 767
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
36-565 |
5.92e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 5.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 36 RKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEdfvynLQVLEERDLELERYDAAFAQAREWEEARRAEVSEL 115
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEE-----LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 116 KIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERvhsdkngeidhhreqyenlkwtLERKLEELDGELALQRQELL 195
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLER----------------------LEEELEELEEALAELEEEEE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 196 LEFESKMRKREHEFRLQADNMSNTALSRELKvkllhKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM 275
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELL-----EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 276 SRARVKDLEDKLHSVQLTRKKEEETF---------KRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAhcET 346
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAAleaalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA--AA 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 347 LEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQdIERYK 426
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG-SRREL 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 427 QQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQ 506
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217311200 507 AVQALRMHGLPRPGAQMLLRQHEEEIS-------------------KDFPSSEIQRLREQNTSLRNAIAQMRKEMEAL 565
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREIEalgpvnllaieeyeeleerYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
102-621 |
7.53e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 7.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 102 REWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEH----RLELERVHSDKNGEIDHHREQYENlkwtLE 177
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEleaeLEELRLELEELELELEEAQAEEYE----LL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 178 RKLEELDGELALQRQEL--LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 255
Cdd:COG1196 295 AELARLEQDIARLEERRreLEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 256 AELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQT 335
Cdd:COG1196 375 AEAEEELEELAEELLEAL----RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 336 RVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKS-------------AWDAQIAQLSKEMVSRDLQIQ 402
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLlleaeadyegfleGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 403 TLQEEEVKLKAQVA--------------RSQQDIERYKQQL--------SLAVERERSLERDQVQLGLDWQRRCDDIERD 460
Cdd:COG1196 530 IGVEAAYEAALEAAlaaalqnivveddeVAAAAIEYLKAAKagratflpLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 461 QIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIS------- 533
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEelaerla 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 534 KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKF 613
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
....*...
gi 2217311200 614 KTLEKHLE 621
Cdd:COG1196 770 ERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
242-569 |
1.75e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 242 AKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRK--KEEETFKRKHEELDRLAREKDAVL 319
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKdlARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 320 VAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWR---QADTAKEKDAAIDQLREDASTVKSAWD---AQIAQLSKE 393
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEElkaLREALDELRAELTLLNEEAANLRERLEsleRRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 394 MVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIE--RDQIQKSEALIQG 471
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRelESKRSELRRELEE 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 472 LSMAKSQVAAKLQETEQALQE-QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIS----------------- 533
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNlQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKelgpvnlaaieeyeelk 999
|
330 340 350
....*....|....*....|....*....|....*...
gi 2217311200 534 --KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 569
Cdd:TIGR02168 1000 erYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDT 1037
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
294-569 |
1.64e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 294 RKKEEETFKRKHEELDRLAREKDavLVAVKGAHVEQLQ---ELQTRVLELQAHCETLEAQLRRAEWRQAdtaKEKDAAID 370
Cdd:COG1196 171 KERKEEAERKLEATEENLERLED--ILGELERQLEPLErqaEKAERYRELKEELKELEAELLLLKLREL---EAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 371 QLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDW 450
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 451 QRrcddiERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALrmhglprpgAQMLLRQHEE 530
Cdd:COG1196 326 AE-----LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL---------EELAEELLEA 391
|
250 260 270
....*....|....*....|....*....|....*....
gi 2217311200 531 EISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 569
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
52-342 |
1.69e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 1.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 52 QEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREAR 131
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 132 KVEELQQQQQLAFQEHRLELERVHsdkngEIDHHREQYENLKWTLERKLEELDGELALQRQELllefeSKMRKREHEFRL 211
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLE-----EAEEELAEAEAEIEELEAQIEQLKEELKALREAL-----DELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 212 QADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE---RKLQSRAGELQDLEAMSRARVKDLEDKLH 288
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEeliEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2217311200 289 SVQLTRKKEEETFKRKHEELDRLAREkdavlvavKGAHVEQLQELQTRVLELQA 342
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREK--------LAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
213-493 |
2.04e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 213 ADNMSNTALSRELKVKLLHKELEALkeagakaaeslqraEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQL 292
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEEL--------------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 293 TRK--KEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWR---QADTAKEKDA 367
Cdd:TIGR02168 731 LRKdlARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEElkaLREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 368 AIDQLREDASTVKSAWD---AQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQV 444
Cdd:TIGR02168 811 ELTLLNEEAANLRERLEsleRRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2217311200 445 QLGLDWQRRCDDIE--RDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQ 493
Cdd:TIGR02168 891 LLRSELEELSEELRelESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
95-565 |
2.15e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 2.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 95 DAAFAQAREWEEARRAEVSELKIEAAKLRQAL-------------AREARKVEELQQQQQL--------AFQEHRLELER 153
Cdd:PTZ00121 1151 AKRVEIARKAEDARKAEEARKAEDAKKAEAARkaeevrkaeelrkAEDARKAEAARKAEEErkaeearkAEDAKKAEAVK 1230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 154 VHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLEFESK----MRK----------REHEFRLQADNMSNT 219
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARkadeLKKaeekkkadeaKKAEEKKKADEAKKK 1310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 220 ALSRELKVKLLHKELEALKEAGA---KAAESLQRAEATNAELERKlqsrAGELQDLEAMSRARVKDLEDKLHSVQLTRKK 296
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAakkKAEEAKKAAEAAKAEAEAA----ADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 297 EEEtfKRKHEELDRLARE--KDAVLVAVKGAHVEQLQELQTRVLELQahcETLEAQLRRAEWRQADTAKEKdaaIDQLRE 374
Cdd:PTZ00121 1387 AEE--KKKADEAKKKAEEdkKKADELKKAAAAKKKADEAKKKAEEKK---KADEAKKKAEEAKKADEAKKK---AEEAKK 1458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 375 DASTVKSAWDAQIAQLSKEMVSRDLQIQTLQE--EEVKLKAQVARSQQDIERYKQQLSLAVERERS--LERDQVQLGLDW 450
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKkaEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAdeAKKAEEAKKADE 1538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 451 QRRCDDIER-DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQmlLRQHE 529
Cdd:PTZ00121 1539 AKKAEEKKKaDELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE--AKKAE 1616
|
490 500 510
....*....|....*....|....*....|....*.
gi 2217311200 530 EEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEAL 565
Cdd:PTZ00121 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
35-563 |
9.95e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 9.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 35 LRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKlrclqedfvynlqvlEERDLELERYDAAFA----QAREWEEARRA 110
Cdd:PTZ00121 1193 LRKAEDARKAEAARKAEEERKAEEARKAEDAKKAE---------------AVKKAEEAKKDAEEAkkaeEERNNEEIRKF 1257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 111 EVSELKIEAAKLRQALAREARKVEelqqqqqlafqehrlELERVHSDKNGEidhhreqyENLKWTLERKLEELDGELALQ 190
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKAD---------------ELKKAEEKKKAD--------EAKKAEEKKKADEAKKKAEEA 1314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 191 RQelllefESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQ 270
Cdd:PTZ00121 1315 KK------ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 271 DLEAMSRARVKDLEDKLHSVQLTRKKEEetfKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETL--- 347
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAA---KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAkkk 1465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 348 --------EAQLRRAEWRQADTAKEK----DAAIDQLREDASTVKSAWDAQIAQLSKEM-----VSRDLQIQTLQEEEVK 410
Cdd:PTZ00121 1466 aeeakkadEAKKKAEEAKKADEAKKKaeeaKKKADEAKKAAEAKKKADEAKKAEEAKKAdeakkAEEAKKADEAKKAEEK 1545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 411 LKAQVARSQQDIERYKQQLSlaVERERSLERDQvQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQE----T 486
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKK--AEEAKKAEEDK-NMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEakikA 1622
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217311200 487 EQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEME 563
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
82-565 |
1.10e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.05 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 82 QVLEERDLELERYDAAFAQAREWEEA----------RRAEVSELKIEAAKLRQALAREARKveelQQQQQLAFQEHRLEL 151
Cdd:PRK02224 213 SELAELDEEIERYEEQREQARETRDEadevleeheeRREELETLEAEIEDLRETIAETERE----REELAEEVRDLRERL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 152 ERVHSDKNGEIDhhreqyenlkwtlERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLH 231
Cdd:PRK02224 289 EELEEERDDLLA-------------EAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 232 KELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM---SRARVKDLEDKLHSVQLTR---KKEEETFKRKH 305
Cdd:PRK02224 356 ERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdAPVDLGNAEDFLEELREERdelREREAELEATL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 306 EELDRLAREKDAVLVA---------VKGA-HVEQLQELQTRVLELQAHCETLEAQLRRAEWR--QADTAKEKDAAIDQLR 373
Cdd:PRK02224 436 RTARERVEEAEALLEAgkcpecgqpVEGSpHVETIEEDRERVEELEAELEDLEEEVEEVEERleRAEDLVEAEDRIERLE 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 374 EDASTVksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLgldwqrr 453
Cdd:PRK02224 516 ERREDL----EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL------- 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 454 cdDIERDQIQKSEALIQGLSMAKSQVaAKLQETEQALQEQEVVLKAVTLERDQAVQALR--MHGLPRPGAQMLLRQHEEE 531
Cdd:PRK02224 585 --KERIESLERIRTLLAAIADAEDEI-ERLREKREALAELNDERRERLAEKRERKRELEaeFDEARIEEAREDKERAEEY 661
|
490 500 510
....*....|....*....|....*....|....
gi 2217311200 532 ISKdfPSSEIQRLREQNTSLRNAIAQMRKEMEAL 565
Cdd:PRK02224 662 LEQ--VEEKLDELREERDDLQAEIGAVENELEEL 693
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
242-529 |
1.99e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 242 AKAAESLQRAEATNAELERKLQS------RAGELQDLEAMSRA--------RVKDLEDKLHSVQLTRKKEEetfkRKHEE 307
Cdd:TIGR02168 182 ERTRENLDRLEDILNELERQLKSlerqaeKAERYKELKAELRElelallvlRLEELREELEELQEELKEAE----EELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 308 LDRLAREKDAVLVAVKGAHVE---QLQELQTRVLELQAHCETLEAQLRRAEWRQA--------------------DTAKE 364
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSEleeEIEELQKELYALANEISRLEQQKQILRERLAnlerqleeleaqleelesklDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 365 KDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQV 444
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 445 QLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQML 524
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
....*
gi 2217311200 525 LRQHE 529
Cdd:TIGR02168 498 QENLE 502
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
94-438 |
2.22e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 2.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 94 YDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKveelqQQQQLAFQEHRLELERVH-SDKNGEIDHHREQYENL 172
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE-----REKAERYQALLKEKREYEgYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 173 KWTLERKLEELDGeLALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAE 252
Cdd:TIGR02169 243 ERQLASLEEELEK-LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 253 ATNAELERKLQSRAGELQDLEAmSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKgahvEQLQE 332
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELER-EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR----EKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 333 LQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDA------QIAQLSKEMVSRDLQIQTLQE 406
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEikkqewKLEQLAADLSKYEQELYDLKE 476
|
330 340 350
....*....|....*....|....*....|..
gi 2217311200 407 EEVKLKAQVARSQQDIERYKQQLSLAVERERS 438
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
114-430 |
2.24e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 114 ELKIEAAKLRQALAREARKVEELQQQQQLAFQEHrlelervhsdkngeidhhrEQYENLKWTLERKLEELDGELALQRQE 193
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKEL-------------------EELEEELEQLRKELEELSRQISALRKD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 194 lLLEFESKMRKREHEFRLQADNMSNtalsrelkvklLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE 273
Cdd:TIGR02168 735 -LARLEAEVEQLEERIAQLSKELTE-----------LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 274 AMS---RARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLvavkgahvEQLQELQTRVLELQAHCETLEAQ 350
Cdd:TIGR02168 803 EALdelRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS--------EDIESLAAEIEELEELIEELESE 874
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 351 LRRAEWRQAdtakEKDAAIDQLREDASTVksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLS 430
Cdd:TIGR02168 875 LEALLNERA----SLEEALALLRSELEEL----SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
29-323 |
1.43e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 29 ALNELLLRKEEEWRALQAHRTQLQ------EAALQDTRSQLEEAQGKLRCLqedfvynLQVLEERDLELERYDAAFAQAR 102
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSkeltelEAEIEELEERLEEAEEELAEA-------EAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 103 EWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSdkngeIDHHREQYENLKWTLERKLEE 182
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEA 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 183 LDGELALQRQELllefeskmrkreHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKL 262
Cdd:TIGR02168 878 LLNERASLEEAL------------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217311200 263 QSRAG-ELQDLEAMSRARVKDLEDKLHSV-QLTRKKEE---------ETFKRKHEELDRLAREKDAVLVAVK 323
Cdd:TIGR02168 946 SEEYSlTLEEAEALENKIEDDEEEARRRLkRLENKIKElgpvnlaaiEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
246-534 |
2.03e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 2.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 246 ESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkKEEETFKRKHEELDRLAREKDAVLVAVKG- 324
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE----QEEEKLKERLEELEEDLSSLEQEIENVKSe 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 325 -AHVE-QLQELQTRVLELQAHCETLEAQLRRAEWRQadtakekdaaIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQ-- 400
Cdd:TIGR02169 760 lKELEaRIEELEEDLHKLEEALNDLEARLSHSRIPE----------IQAELSKLEEEVSRIEARLREIEQKLNRLTLEke 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 401 -----IQTLQEEEVKLKAQVARSQQDIERYKQQLSlavERERSLERDQVQLgLDWQRRCDDIERDqIQKSEALIQGLSMA 475
Cdd:TIGR02169 830 ylekeIQELQEQRIDLKEQIKSIEKEIENLNGKKE---ELEEELEELEAAL-RDLESRLGDLKKE-RDELEAQLRELERK 904
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217311200 476 KSQVAAKLQETEQALQEQEVVLKAVtLERDQAVQALRMHGLPRPGAQMLLRQHEEEISK 534
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEAL-EEELSEIEDPKGEDEEIPEEELSLEDVQAELQR 962
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
176-441 |
2.04e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 176 LERKLEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNtalsrelKVKLLHKELEALKEAGAKAAESLQRAEATN 255
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSEL-----RRIENRLDELSQELSDASR-------KIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 256 AELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQLTRKKEEETFKR-KHEELDRLAREKDAVLVAVKGAHVEQLQELQ 334
Cdd:TIGR02169 747 SSLEQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 335 TRVLE---LQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSA------WDAQIAQLSKEMVSRDLQIQTLQ 405
Cdd:TIGR02169 823 RLTLEkeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrdLESRLGDLKKERDELEAQLRELE 902
|
250 260 270
....*....|....*....|....*....|....*.
gi 2217311200 406 EEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER 441
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
34-370 |
2.07e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 2.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 34 LLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEErdlELERYDAAFAQAREWEEARRAEVS 113
Cdd:TIGR02168 215 YKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE---KLEELRLEVSELEEEIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 114 ELKIEAAKLrqalarEARKVEELQQQQQLAFQEHRLELERVHSDKngeidhHREQYENLKWTLERKLEELDGELALQRQE 193
Cdd:TIGR02168 292 ALANEISRL------EQQKQILRERLANLERQLEELEAQLEELES------KLDELAEELAELEEKLEELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 194 L--LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQsragelqd 271
Cdd:TIGR02168 360 LeeLEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE-------- 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 272 leamsRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLvavkgahvEQLQELQTRVLELQAHCETLEAQL 351
Cdd:TIGR02168 432 -----EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE--------QALDAAERELAQLQARLDSLERLQ 498
|
330
....*....|....*....
gi 2217311200 352 RRAEWRQADTAKEKDAAID 370
Cdd:TIGR02168 499 ENLEGFSEGVKALLKNQSG 517
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
90-509 |
2.24e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 90 ELERYDAAFAQAREW----EEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHH 165
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAkkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 166 REQYENLKwtleRKLEEL-DGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKvkllhKELEALKEAGAKA 244
Cdd:PTZ00121 1489 KKKAEEAK----KKADEAkKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK-----KADELKKAEELKK 1559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 245 AESLQRAEATNAELERKLQS--RAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAV 322
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 323 KGAHVEQLQELQTRVLELQAHCETLE-AQLRRAEWRQADTAK----EKDAAIDQLREDASTVKSAWDA---------QIA 388
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEeAKKAEEDKKKAEEAKkaeeDEKKAAEALKKEAEEAKKAEELkkkeaeekkKAE 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 389 QLSKEMVSRDLQIQTL--QEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQ----VQLGLDWQRRCDDIERDQ- 461
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAkkEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEkeavIEEELDEEDEKRRMEVDKk 1799
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 2217311200 462 ---IQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQ 509
Cdd:PTZ00121 1800 ikdIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
85-422 |
2.38e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 85 EERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQAL-AREARKVEELQQQQQLAFQEHRLELERVHSDKNGEID 163
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKkADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKA 1572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 164 HHREQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNmsntaLSRELKVKLLHKELEALKEAGAK 243
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE-----LKKAEEEKKKVEQLKKKEAEEKK 1647
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 244 AAESLQRAEATNAelERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEetfKRKHEELDRLAREKdavlvaVK 323
Cdd:PTZ00121 1648 KAEELKKAEEENK--IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKKEAEE------KK 1716
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 324 GAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDastvksawDAQIAQLSKEMVSRdlqiQT 403
Cdd:PTZ00121 1717 KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK--------KAEEIRKEKEAVIE----EE 1784
|
330
....*....|....*....
gi 2217311200 404 LQEEEVKLKAQVARSQQDI 422
Cdd:PTZ00121 1785 LDEEDEKRRMEVDKKIKDI 1803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
86-417 |
2.49e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 86 ERDLELERYDAAFAQAREWEEARRAEVSELKIEaaklRQALAREARKVEELQQQQQLAFQEHRLELERVHSDkngeidhh 165
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKE----LEELEEELEQLRKELEELSRQISALRKDLARLEAE-------- 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 166 REQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQA--DNMSNTALSRELKVKLLHKELEALKEAGAK 243
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAqiEQLKEELKALREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 244 AAESLQRAEATNAELERKLQSRAGELqdleamsrarvKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVK 323
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQI-----------EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 324 gAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQT 403
Cdd:TIGR02168 891 -LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
330
....*....|....
gi 2217311200 404 LQEEEVKLKAQVAR 417
Cdd:TIGR02168 970 ARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
302-621 |
2.93e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 2.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 302 KRKHEELDRLAREKDAvLVAVKGAHVE---QLQELQ------TRVLELQAHCETLEAQLRRAEWRQA----DTAKEKDAA 368
Cdd:TIGR02168 172 ERRKETERKLERTREN-LDRLEDILNElerQLKSLErqaekaERYKELKAELRELELALLVLRLEELreelEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 369 IDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAverERSLERDQVQLGL 448
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL---ERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 449 DWQRRcdDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAvqalrmhglprpgaqmllrqh 528
Cdd:TIGR02168 328 LESKL--DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL--------------------- 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 529 eeeiskdfpSSEIQRLREQNTSLRNAIAQMRKEMEALSHQipppIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRT 608
Cdd:TIGR02168 385 ---------RSKVAQLELQIASLNNEIERLEARLERLEDR----RERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451
|
330
....*....|...
gi 2217311200 609 LKHKFKTLEKHLE 621
Cdd:TIGR02168 452 LQEELERLEEALE 464
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
84-381 |
3.39e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 84 LEERDLELERydaafAQAREWEEARRAEVSELKIEAAKLRQalareaRKVEELQQQQQLAFQEHRLELervhSDKNGEID 163
Cdd:TIGR02168 241 LEELQEELKE-----AEEELEELTAELQELEEKLEELRLEV------SELEEEIEELQKELYALANEI----SRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 164 HHREQYENLKWTLERKLEELDgELALQRQELLLEFEskmrkrehefrlqadnmsntalSRELKVKLLHKELEALKEAGAK 243
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLE-ELESKLDELAEELA----------------------ELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 244 AAESLQRAEATNAELERKLQSRAGELQDLE---AMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKdavlv 320
Cdd:TIGR02168 363 LEAELEELESRLEELEEQLETLRSKVAQLElqiASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE----- 437
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217311200 321 avkgaHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKS 381
Cdd:TIGR02168 438 -----LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
268-493 |
3.78e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 3.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 268 ELQDLEAMsRARVKDLEDKLHSVQLTRKKEEEtFKRKHEELDRLAREKDAVLVAvkgAHVEQLQELQTRVLELQAHCETL 347
Cdd:COG4913 233 HFDDLERA-HEALEDAREQIELLEPIRELAER-YAAARERLAELEYLRAALRLW---FAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 348 EAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQ 427
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA 387
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217311200 428 QLSLAVERERSLERDQVQLGLDWQRRCDDIERdQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQ 493
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAALRDLRR-ELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
34-439 |
5.79e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 5.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 34 LLRKEEEWRALQAHRTQLqEAALQDTRSQLEEAQGKLRCLQEdfVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVS 113
Cdd:COG4717 83 AEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEK--LLQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 114 ELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELA----- 188
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENeleaa 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 189 -----LQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQ 263
Cdd:COG4717 240 aleerLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 264 SRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHE-ELDRLAREKDAVLVAVKGAHVEQLQELQTRV---LE 339
Cdd:COG4717 320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEElQLEELEQEIAALLAEAGVEDEEELRAALEQAeeyQE 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 340 LQAHCETLEAQLRR-AEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEvklkaQVARS 418
Cdd:COG4717 400 LKEELEELEEQLEElLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG-----ELAEL 474
|
410 420
....*....|....*....|.
gi 2217311200 419 QQDIERYKQQLSLAVERERSL 439
Cdd:COG4717 475 LQELEELKAELRELAEEWAAL 495
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
174-391 |
7.11e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 7.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 174 WTLERKLEELDGELALQRQELL----LEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAgakaaesLQ 249
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAeaeeRLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAE-------LE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 250 RAEATNAELERkLQSRAGELqdleamsRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAvlvAVKGAHVEQ 329
Cdd:COG4913 679 RLDASSDDLAA-LEEQLEEL-------EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA---AEDLARLEL 747
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217311200 330 LQELQTRVLELQAhcETLEAQLRRA-EWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLS 391
Cdd:COG4913 748 RALLEERFAAALG--DAVERELRENlEERIDALRARLNRAEEELERAMRAFNREWPAETADLD 808
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
176-381 |
8.64e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 8.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 176 LERKLEELDGELALQRQELLlEFESKMRkrehEFRLQadnmsNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 255
Cdd:COG3206 173 ARKALEFLEEQLPELRKELE-EAEAALE----EFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 256 AELERKLQSRAGELQDLeaMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQT 335
Cdd:COG3206 243 AALRAQLGSGPDALPEL--LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEA 320
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2217311200 336 RVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKS 381
Cdd:COG3206 321 ELEALQAREASLQAQLAQLE-ARLAELPELEAELRRLEREVEVARE 365
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
325-564 |
1.11e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 325 AHVEQLQELQTRVLELQAHCETLEaQLRrAEWRQADTAKEKDAAIDQLREDAStvksAWDAQ--IAQLSKEMVSRDLQIQ 402
Cdd:COG4913 232 EHFDDLERAHEALEDAREQIELLE-PIR-ELAERYAAARERLAELEYLRAALR----LWFAQrrLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 403 TLQEEEVKLKAQVARSQQDIERYKQQL-SLAVERERSLERDQVQLgldwQRRCDDIERDQiQKSEALIQGLSMAKSQVAA 481
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERL----ERELEERERRR-ARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 482 KLQETEQALQEQevvLKAVTLERDQAVQALRMHGlprpGAQMLLRQHEEEISKdfpssEIQRLREQNTSLRNAIAQMRKE 561
Cdd:COG4913 381 EFAALRAEAAAL---LEALEEELEALEEALAEAE----AALRDLRRELRELEA-----EIASLERRKSNIPARLLALRDA 448
|
...
gi 2217311200 562 MEA 564
Cdd:COG4913 449 LAE 451
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
226-424 |
1.60e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 226 KVKLLHKELEALKEAGAKAAESLQRAEAtnaeLERKLQSRAGELQDLEAMSRAR--VKDLEDKLHSVQltrkkeeetfkr 303
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEA----ELDALQERREALQRLAEYSWDEidVASAEREIAELE------------ 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 304 khEELDRLaREKDAVLVAVKgahvEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSA- 382
Cdd:COG4913 675 --AELERL-DASSDDLAALE----EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEl 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2217311200 383 ---WDAQIAQLSKEMVSRDLQiQTLQEEEVKLKAQVARSQQDIER 424
Cdd:COG4913 748 ralLEERFAAALGDAVERELR-ENLEERIDALRARLNRAEEELER 791
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
75-359 |
2.25e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 75 EDFVYNlQVLEERDLElERYDAAFAQAREWEEARRAEVSELK--------IEAAKLRQALAREARKVEELQQQQQLAFQE 146
Cdd:COG4913 210 DDFVRE-YMLEEPDTF-EAADALVEHFDDLERAHEALEDAREqiellepiRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 147 HRLELERvhsdknGEIDHHREQYEnlkwTLERKLEELDGELALQRQELLlefeskmrkrehEFRLQADNMSNTALSR-EL 225
Cdd:COG4913 288 RRLELLE------AELEELRAELA----RLEAELERLEARLDALREELD------------ELEAQIRGNGGDRLEQlER 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 226 KVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKH 305
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217311200 306 EELDRLAREKDAVlvavkGAHVEQL-----QELQTRVLELQAHCETLEAQLRRAEWRQA 359
Cdd:COG4913 426 AEIASLERRKSNI-----PARLLALrdalaEALGLDEAELPFVGELIEVRPEEERWRGA 479
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
277-569 |
2.26e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 277 RARVKDLEDKLHSVQLTRKKEEETFKRKHEE-LDRLAREKDAVLVAVkgahVEQLQELQTRVLELQAHCETLEAQLRRAE 355
Cdd:pfam15921 237 KGRIFPVEDQLEALKSESQNKIELLLQQHQDrIEQLISEHEVEITGL----TEKASSARSQANSIQSQLEIIQEQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 356 WRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQI-------QTLQEEEVKLKAQVARSQQDIERYKQQ 428
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELtearterDQFSQESGNLDDQLQKLLADLHKREKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 429 LSLAVERERSL-ERDQ-VQLGLDWQRRCDDIERDQIQKSEALIQGL--------------------SMAK-SQVAAKLQE 485
Cdd:pfam15921 393 LSLEKEQNKRLwDRDTgNSITIDHLRRELDDRNMEVQRLEALLKAMksecqgqmerqmaaiqgkneSLEKvSSLTAQLES 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 486 TEQALQE--QEVVLKAVTLERDQAVQALRMHGLPRpgAQMLLRQHEEEISK-----DFPSSEIQRLREQNTSLRNAiaqm 558
Cdd:pfam15921 473 TKEMLRKvvEELTAKKMTLESSERTVSDLTASLQE--KERAIEATNAEITKlrsrvDLKLQELQHLKNEGDHLRNV---- 546
|
330
....*....|.
gi 2217311200 559 RKEMEALSHQI 569
Cdd:pfam15921 547 QTECEALKLQM 557
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
29-492 |
2.33e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 29 ALNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEAR 108
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERE-------LEERERRRARLEALLAALGLPLPAS 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 109 RAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSdkngEIDHHREQYENLKWTLERKLEELDGELA 188
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA----EIASLERRKSNIPARLLALRDALAEALG 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 189 LQRQEL-----LLEfeskMRKREHEFRLQADNMSNTA----LSRELKVKLLHKELEALKEAGA----KAAESLQRAEATN 255
Cdd:COG4913 455 LDEAELpfvgeLIE----VRPEEERWRGAIERVLGGFaltlLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPR 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 256 AE---LERKLQSRAGELQD------LEAMSRARVKDLED-KLHSVQLTR----KKEEETF-KRKHEELDRL------ARE 314
Cdd:COG4913 531 LDpdsLAGKLDFKPHPFRAwleaelGRRFDYVCVDSPEElRRHPRAITRagqvKGNGTRHeKDDRRRIRSRyvlgfdNRA 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 315 KDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAE------WRQADTAK------EKDAAIDQLREDASTVKSA 382
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeysWDEIDVASaereiaELEAELERLDASSDDLAAL 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 383 wDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQvqlgLDWQRRCDDIERDQI 462
Cdd:COG4913 691 -EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL----LEERFAAALGDAVER 765
|
490 500 510
....*....|....*....|....*....|
gi 2217311200 463 QKSEALIQGLSMAKSQVAAKLQETEQALQE 492
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
29-365 |
3.62e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 29 ALNELLLRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEAR 108
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELS-QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 109 RAEVSELKIEAAKLRQAL----AREARKVEELQQQQQLAFQEHRLELERVHSDKNGEI---DHHREQYENLKWTLERKLE 181
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALndleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLnrlTLEKEYLEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 182 ELDGELAL--QRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE 259
Cdd:TIGR02169 844 DLKEQIKSieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 260 RKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLtrkkeEETFKRKHEELDRLArekdavlvAVKGAHVEQLQELQTRVLE 339
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGEDEEIPEEELSLEDV-----QAELQRVEEEIRALE--------PVNMLAIQEYEEVLKRLDE 990
|
330 340
....*....|....*....|....*.
gi 2217311200 340 LQAHCETLEAQLRRAEWRQADTAKEK 365
Cdd:TIGR02169 991 LKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
217-450 |
4.34e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 217 SNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsraRVKDLEDKLHSVQLTRKK 296
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ----ELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 297 EEETFKRKHEELDRLAR------EKDAVLVAVKGAHVEQ----LQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKd 366
Cdd:COG4942 95 LRAELEAQKEELAELLRalyrlgRQPPLALLLSPEDFLDavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAER- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 367 AAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQL 446
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
....
gi 2217311200 447 GLDW 450
Cdd:COG4942 254 KLPW 257
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
29-275 |
5.19e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 5.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 29 ALNELLLRKEEEWRALQAHRTQLQE------AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAR 102
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEeieelqKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 103 EWEEARRAEVSELKIEAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLER---K 179
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAE--------LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERleaR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 180 LEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNTALSRELKVklLHKELEALKEAGAKAAESLQRAEATNAELE 259
Cdd:TIGR02168 409 LERLEDRRERLQQEI-----EELLKKLEEAELKELQAELEELEEELEE--LQEELERLEEALEELREELEEAEQALDAAE 481
|
250
....*....|....*.
gi 2217311200 260 RKLQSRAGELQDLEAM 275
Cdd:TIGR02168 482 RELAQLQARLDSLERL 497
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
38-349 |
1.23e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 38 EEEWRALQAHRTQLQEAaLQDTRSQLEEAQGKLRCLQEDFVYNLQVLEE-------RDLELERYDAAFAQAREWEEARRA 110
Cdd:PRK02224 404 PVDLGNAEDFLEELREE-RDELREREAELEATLRTARERVEEAEALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEA 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 111 EVSELKIEAAKLRQALAREARKVEELQQQQQLafQEHRLELERVHSDKNGEIDHHREQYEnlkwtlerkleeldgELALQ 190
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIERL--EERREDLEELIAERRETIEEKRERAE---------------ELRER 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 191 RQELLLEFESKmRKREHEFRLQADNMSNTALSRELKVKLLHKELEALkeagAKAAESLQRAEATNAELERkLQSRAGELQ 270
Cdd:PRK02224 546 AAELEAEAEEK-REAAAEAEEEAEEAREEVAELNSKLAELKERIESL----ERIRTLLAAIADAEDEIER-LREKREALA 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 271 DLEAMSRARVKDL------------EDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAH--VEQLQELQTR 336
Cdd:PRK02224 620 ELNDERRERLAEKrerkreleaefdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEneLEELEELRER 699
|
330
....*....|...
gi 2217311200 337 VLELQAHCETLEA 349
Cdd:PRK02224 700 REALENRVEALEA 712
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
29-569 |
1.34e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 29 ALNELLLRKEEEWRALQAHRTQLQ------EAALQDTRSQLEEAQGKLRCLQEDFvynLQVLEERDLELERYDAAFAQAR 102
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLErqleelEAQLEELESKLDELAEELAELEEKL---EELKEELESLEAELEELEAELE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 103 EWE----------EARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENL 172
Cdd:TIGR02168 369 ELEsrleeleeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 173 KWTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELK-----VKLLHKELEALKEAGAKAAES 247
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegVKALLKNQSGLSGILGVLSEL 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 248 LQRAEATNAELERKLQSRageLQDLEamsrarVKDLEDKLHSVQLTRKKEEE--TFKRKHEELDRLAREKDAVLVAVKGA 325
Cdd:TIGR02168 529 ISVDEGYEAAIEAALGGR---LQAVV------VENLNAAKKAIAFLKQNELGrvTFLPLDSIKGTEIQGNDREILKNIEG 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 326 HVEQLQELQTRVLELQAHCETLEAQLRRAEwrqadtakEKDAAIDQLRE----------DASTVKSAW---------DAQ 386
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKALSYLLGGVLVVD--------DLDNALELAKKlrpgyrivtlDGDLVRPGGvitggsaktNSS 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 387 IAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIER--DQIQK 464
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQleERIAQ 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 465 SEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISK-----DFPSS 539
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANlrerlESLER 831
|
570 580 590
....*....|....*....|....*....|
gi 2217311200 540 EIQRLREQNTSLRNAIAQMRKEMEALSHQI 569
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
226-425 |
1.54e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 226 KVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQD-LEAMsrarVKDLED------KLHSVQLTRKKEE 298
Cdd:PHA02562 196 QIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDeLLNL----VMDIEDpsaalnKLNTAAAKIKSKI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 299 ETFKRKHEELdrlarEKDAVLVAVKGA---HVEQLQELQTRVLELQAHCETL-----EAQLRRAEWRQAD-TAKEKDAAI 369
Cdd:PHA02562 272 EQFQKVIKMY-----EKGGVCPTCTQQiseGPDRITKIKDKLKELQHSLEKLdtaidELEEIMDEFNEQSkKLLELKNKI 346
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217311200 370 DQLREDAST-VKSAWDAQ--IAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERY 425
Cdd:PHA02562 347 STNKQSLITlVDKAKKVKaaIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
349-571 |
1.72e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 349 AQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQ 428
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 429 L--------SLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKS-----EALIQGLSMAKSQVAAKLQETEQALQEQEV 495
Cdd:COG4942 99 LeaqkeelaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYlaparREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217311200 496 VLKAVTLERDQAVQALRMHglprpgaQMLLRQHEEEISKDfpSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPP 571
Cdd:COG4942 179 LLAELEEERAALEALKAER-------QKLLARLEKELAEL--AAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
299-512 |
1.86e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 299 ETFKRKHEELDRlAREKDAVLvavkgahvEQLQELQTRVLELQAHCETLEAQLRRAE-WRQADTAKEKDAAIDQLREDAS 377
Cdd:COG4913 235 DDLERAHEALED-AREQIELL--------EPIRELAERYAAARERLAELEYLRAALRlWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 378 TVksawDAQIAQLSKemvsrdlQIQTLQEEEVKLKAQVARSQ-QDIERYKQQLSLAVERERSLERDQVQLgldwQRRCDD 456
Cdd:COG4913 306 RL----EAELERLEA-------RLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARL----EALLAA 370
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217311200 457 IERDQIQKSE---ALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALR 512
Cdd:COG4913 371 LGLPLPASAEefaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
|
| ASY3-like |
pfam20435 |
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific ... |
75-233 |
2.28e-03 |
|
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific proteins, such as AtASY3 from Arabidopsis and PAIR3 from rice. They are coiled-coil domain proteins required for normal meiosis. PAIR3 is an axial element and part of the synaptonemal complex (SC) that forms between homologous chromosomes during meiosis. Members of this family are homologs of SCYP2 from vertebrates and fungal Red1/Rec10.
Pssm-ID: 466584 [Multi-domain] Cd Length: 793 Bit Score: 41.02 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 75 EDFVYNLQVLEERDLELERYDAAFAQA--------REWEEARRAEV-----SELKIEAAKLRQALAREARKV----EELQ 137
Cdd:pfam20435 610 DSFQHCSEMDEDEDEGLGRAVALFAMAlqnferklKSAAEKKSSEIiasvsEEIHLELENIKSHIITEAGKTsnlaKTKR 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 138 QQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQR---QELLLEFESKMRKREHEFRLQAD 214
Cdd:pfam20435 690 KHAETRLQEQEEKMRMIHEKFKDDVSHHLEDFKSTIEELEANQSELKGSIKKQRtshQKLIAHFEGGIETKLDDATKRID 769
|
170
....*....|....*....
gi 2217311200 215 NMSNTALSRELKVKLLHKE 233
Cdd:pfam20435 770 SVNKSARGKMLQLKMIVAE 788
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
54-624 |
2.52e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 54 AALQDTRSQLEEAQGKLRCLQEDFVyNLQVLEERdlELERYDAAFAQAREWEEARRAEVSElKIEAAKLRQALAREArkv 133
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYK-SDETLIAS--RQEERQETSAELNQLLRTLDDQWKE-KRDELNGELSAADAA--- 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 134 eelqqqqqlaFQEHRLELERVHSDKNGEIDHHREQY----ENLKwTLERKLEELDGELALQ---RQELLLEFESKMRKRE 206
Cdd:pfam12128 317 ----------VAKDRSELEALEDQHGAFLDADIETAaadqEQLP-SWQSELENLEERLKALtgkHQDVTAKYNRRRSKIK 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 207 HEF-RLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLED 285
Cdd:pfam12128 386 EQNnRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 286 KLHSVQLTRKKEEETFKRKHEELDrlAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLrraewrqadtakek 365
Cdd:pfam12128 466 LENFDERIERAREEQEAANAEVER--LQSELRQARKRRDQASEALRQASRRLEERQSALDELELQL-------------- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 366 DAAIDQLREDASTVKSAWDAQIAQL-SKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQV 444
Cdd:pfam12128 530 FPQAGTLLHFLRKEAPDWEQSIGKViSPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKA 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 445 QLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQAL--------QEQEVVLKAVTLERDQAVQALRMHGL 516
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLrrlfdekqSEKDKKNKALAERKDSANERLNSLEA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 517 PRPGAQMLLRQHEEEISKDFPSSEIQRL---REQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAEstdanQPDPEAGGDA 593
Cdd:pfam12128 690 QLKQLDKKHQAWLEEQKEQKREARTEKQaywQVVEGALDAQLALLKAAIAARRSGAKAELKALET-----WYKRDLASLG 764
|
570 580 590
....*....|....*....|....*....|.
gi 2217311200 594 ATPDYVLALEAEIRTLKHKFKTLEKHLEDVL 624
Cdd:pfam12128 765 VDPDVIAKLKREIRTLERKIERIAVRRQEVL 795
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
148-561 |
3.20e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 148 RLELERVHSDKNGEIDHHREQYENLKWT--------LERKLEELDGEL----------ALQRQELLLEFESKMRKREHEF 209
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQIEEKEEKdlherlngLESELAELDEEIeryeeqreqaRETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 210 RLQAD------NMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELER------KLQSRAGELQDLEAMSR 277
Cdd:PRK02224 255 TLEAEiedlreTIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAvearreELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 278 ARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQLRRAEWR 357
Cdd:PRK02224 335 VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRR-EEIEELEEEIEELRERFGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 358 QADTAKEKDAAIDQLREDASTVKSAWD--AQIAQLSKE------------------MVSRDLQIQTLQEEEVKLKAQVAR 417
Cdd:PRK02224 414 LEELREERDELREREAELEATLRTARErvEEAEALLEAgkcpecgqpvegsphvetIEEDRERVEELEAELEDLEEEVEE 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 418 SQQDIERYKQQLSLAVERERSLERDQvqlglDWQRRCDDiERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQE----- 492
Cdd:PRK02224 494 VEERLERAEDLVEAEDRIERLEERRE-----DLEELIAE-RRETIEEKRERAEELRERAAELEAEAEEKREAAAEaeeea 567
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217311200 493 QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEiskdfpssEIQRLREQntslRNAIAQMRKE 561
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESLERIRTLLAAIADAED--------EIERLREK----REALAELNDE 624
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
38-445 |
3.67e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 38 EEEWRALQAHRTQLQEAALQdtRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREweearraEVSELKI 117
Cdd:COG3096 326 EQDYQAASDHLNLVQTALRQ--QEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEE-------EVDSLKS 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 118 EAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSdKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLe 197
Cdd:COG3096 397 QLADYQQALDVQQTR--------AIQYQQAVQALEKARA-LCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSV- 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 198 feSKMRKREHEFRLQAdnmsntalsrelkVKLLHKELEAlKEAGAKAAESLQRAeatnaeleRKLQSRAGELQDLeamsR 277
Cdd:COG3096 467 --ADAARRQFEKAYEL-------------VCKIAGEVER-SQAWQTARELLRRY--------RSQQALAQRLQQL----R 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 278 ARVKDLEDKLHSVQLTRKKEEETFKRKHEELDrlarekdavlvavkgaHVEQLQELQtrvLELQAHCETLEAQLRRAEWR 357
Cdd:COG3096 519 AQLAELEQRLRQQQNAERLLEEFCQRIGQQLD----------------AAEELEELL---AELEAQLEELEEQAAEAVEQ 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 358 QADTAKEKDaaidqlredastvksawdaQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVAR---SQQDIERYKQQLsLAVE 434
Cdd:COG3096 580 RSELRQQLE-------------------QLRARIKELAARAPAWLAAQDALERLREQSGEalaDSQEVTAAMQQL-LERE 639
|
410
....*....|.
gi 2217311200 435 RERSLERDQVQ 445
Cdd:COG3096 640 REATVERDELA 650
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
213-570 |
4.00e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 213 ADNMSNTALSRELKVKLLHKElEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSrarvkdleDKLHSVQl 292
Cdd:COG3096 271 ADYMRHANERRELSERALELR-RELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAS--------DHLNLVQ- 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 293 TRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQL-----------RRA-EWRQAD 360
Cdd:COG3096 341 TALRQQEKIERYQEDLEELTERLEEQEEVVEEAA-EQLAEAEARLEAAEEEVDSLKSQLadyqqaldvqqTRAiQYQQAV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 361 TAKEKdaAIDQLREDASTVKSAWDAQIAQLSKEmvsrDLQIQTLQEEEVKLK-AQVARSQQDiERYK--QQLSLAVERER 437
Cdd:COG3096 420 QALEK--ARALCGLPDLTPENAEDYLAAFRAKE----QQATEEVLELEQKLSvADAARRQFE-KAYElvCKIAGEVERSQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 438 SLERDQvQLGLDWqrrcddieRDQiqksEALIQGLSmaksQVAAKLQETEQALQEQEVVlkavtleRDQAVQALRMHGLP 517
Cdd:COG3096 493 AWQTAR-ELLRRY--------RSQ----QALAQRLQ----QLRAQLAELEQRLRQQQNA-------ERLLEEFCQRIGQQ 548
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2217311200 518 RPGAQMLLRQHEE-EISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIP 570
Cdd:COG3096 549 LDAAEELEELLAElEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAP 602
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
38-448 |
4.28e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 38 EEEWRALQAHRTQLQEAAlqDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKI 117
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVS--SLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 118 EAAKLRQALAREARKVEELQQQQQLAfqeHRLELERVHSDKNGEIdhHREQYENLKWTLERKLEELDgelALQRQELLLE 197
Cdd:pfam15921 525 RVDLKLQELQHLKNEGDHLRNVQTEC---EALKLQMAEKDKVIEI--LRQQIENMTQLVGQHGRTAG---AMQVEKAQLE 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 198 FESKMRKRE-HEFRLQADNmsNTALSRELKVKLLHKELEALK--EAGAKAAESLQRAEATNAELERKLQSRAGELQDLEA 274
Cdd:pfam15921 597 KEINDRRLElQEFKILKDK--KDAKIRELEARVSDLELEKVKlvNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSE 674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 275 MSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRlAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRA 354
Cdd:pfam15921 675 DYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQ-TRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFL 753
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 355 EWRQADTAKEKDAaidqLREDastvKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVE 434
Cdd:pfam15921 754 EEAMTNANKEKHF----LKEE----KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD 825
|
410
....*....|....
gi 2217311200 435 RERSLERDQVQLGL 448
Cdd:pfam15921 826 IIQRQEQESVRLKL 839
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
258-446 |
6.67e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 6.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 258 LERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkKEEETFKRKHEELDrLAREKDAVLVAVKGAhVEQLQELQTRV 337
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE----AALEEFRQKNGLVD-LSEEAKLLLQQLSEL-ESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 338 LELQAHCETLEAQLRRAEWRQADTAKekDAAIDQLREDASTVKsawdAQIAQLSK-------EMVSRDLQIQTLQEE--- 407
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELE----AELAELSArytpnhpDVIALRAQIAALRAQlqq 309
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2217311200 408 -----EVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQL 446
Cdd:COG3206 310 eaqriLASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
156-637 |
7.97e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 39.33 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 156 SDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNTALSRELKVKLLHKELE 235
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSEL-----TEARTERDQFSQESGNLDDQLQKLLADLHKREKELS 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 236 ALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLhsvqltrKKEEETFKRKHEELDRlarek 315
Cdd:pfam15921 395 LEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQM-------ERQMAAIQGKNESLEK----- 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 316 davlVAVKGAHVEQLQELQTRVLE-LQAHCETLEAQLRRAEWRQAdTAKEKDAAIDQLREDASTVKSAWDAQIAQLsKEM 394
Cdd:pfam15921 463 ----VSSLTAQLESTKEMLRKVVEeLTAKKMTLESSERTVSDLTA-SLQEKERAIEATNAEITKLRSRVDLKLQEL-QHL 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 395 VSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQlslaVERERSLERDQVQLGLDWQRRCDDIERdQIQKSEALIQGLSM 474
Cdd:pfam15921 537 KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQ----IENMTQLVGQHGRTAGAMQVEKAQLEK-EINDRRLELQEFKI 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 475 AKSQVAAKLQETEQALQEQEvvlkavtLERDQAVQAlrmhglprpGAQMLlrqheeeiskdfpsSEIQRLREQNTSLRNA 554
Cdd:pfam15921 612 LKDKKDAKIRELEARVSDLE-------LEKVKLVNA---------GSERL--------------RAVKDIKQERDQLLNE 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 555 IAQMRKEMEALSHqipppiqtaaestdanqpdpeaggdaatpdyvlaleaEIRTLKHKFKTLEKHLEDVLDPLKMSSPHA 634
Cdd:pfam15921 662 VKTSRNELNSLSE-------------------------------------DYEVLKRNFRNKSEEMETTTNKLKMQLKSA 704
|
...
gi 2217311200 635 ESQ 637
Cdd:pfam15921 705 QSE 707
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
45-583 |
9.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.13 E-value: 9.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 45 QAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynLQVLEERDLELE--RYDAAFAQAREWEEARRAEVSELKiEAAKL 122
Cdd:COG4913 286 AQRRLELLEAELEELRAELARLEAELERLEAR----LDALREELDELEaqIRGNGGDRLEQLEREIERLERELE-ERERR 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 123 RQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEidhhREQYENLKWTLERKLEELDGELALQRQEL--LLEFES 200
Cdd:COG4913 361 RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEE----LEALEEALAEAEAALRDLRRELRELEAEIasLERRKS 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 201 KMRKREHEFRlqadnmsnTALSRELKVK---------LLhkELEALKEAGAKAAESLQRAEATN--------AELERKLQ 263
Cdd:COG4913 437 NIPARLLALR--------DALAEALGLDeaelpfvgeLI--EVRPEEERWRGAIERVLGGFALTllvppehyAAALRWVN 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 264 SRAGELQ-DLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVavkgAHVEQLQELQTRVlelqa 342
Cdd:COG4913 507 RLHLRGRlVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFDYVCV----DSPEELRRHPRAI----- 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 343 hceTLEAQLrraewRQADTAKEKDaaidqlreDASTVKSAW------DAQIAQLSKEmvsrdlqIQTLQEEEVKLKAQVA 416
Cdd:COG4913 578 ---TRAGQV-----KGNGTRHEKD--------DRRRIRSRYvlgfdnRAKLAALEAE-------LAELEEELAEAEERLE 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 417 RSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVV 496
Cdd:COG4913 635 ALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGE 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217311200 497 LKAVTLERDQAVQAL-----RMHGLPRPG------------AQMLLRQHEEEISKDFpSSEIQRLREQntsLRNAIAQMR 559
Cdd:COG4913 715 IGRLEKELEQAEEELdelqdRLEAAEDLArlelralleerfAAALGDAVERELRENL-EERIDALRAR---LNRAEEELE 790
|
570 580
....*....|....*....|....
gi 2217311200 560 KEMEALSHQIPPPIQTAAESTDAN 583
Cdd:COG4913 791 RAMRAFNREWPAETADLDADLESL 814
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