|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4482 |
pfam14818 |
Domain of unknown function (DUF4482); This family is found in eukaryotes, and is approximately ... |
1253-1376 |
2.14e-52 |
|
Domain of unknown function (DUF4482); This family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam11365.
Pssm-ID: 464333 [Multi-domain] Cd Length: 138 Bit Score: 180.65 E-value: 2.14e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 1253 MDLRWQIHHSEKNWNREKVELLDRLDRDRQEWERQKKEFLWRIEQLQKENSPRR------------GGSFLCDQKDGNVR 1320
Cdd:pfam14818 1 MDLRWQLQHTEKNWHREKMELLDRFDRERQEWESQKKIMQKKIEQLQREVSLRRkinmnerakvidGEKFVPDQKESSSP 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217316427 1321 PFPHQGSLRMPR--PVAMWPCADADSIPFEDRPLSKLKESDRCSASENLYLDALSLDD 1376
Cdd:pfam14818 81 PFPDSGQCEFPRmnHPGSLSKSDSDEESFLDEGNQKLKEQKRCKASENLFLDALSLDN 138
|
|
| SOGA |
pfam11365 |
Protein SOGA; The SOGA (suppressor of glucose by autophagy) family consists of proteins SOGA1, ... |
526-620 |
1.60e-38 |
|
Protein SOGA; The SOGA (suppressor of glucose by autophagy) family consists of proteins SOGA1, SOGA2, and SOGA3. SOGA1 regulates autophagy by playing a role in the reduction of glucose production in an adiponectin and insulin dependent manner.
Pssm-ID: 463264 [Multi-domain] Cd Length: 95 Bit Score: 139.36 E-value: 1.60e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 526 DSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTREAELKLRLKLVEEEANI 605
Cdd:pfam11365 1 SSAELRRQLQFVEEEAELLRRSLSEIEDHNKQLTNELNKYKSKYGPDESSLSDGEGGGSDSSREAELQEELKLARLQINE 80
|
90
....*....|....*
gi 2217316427 606 LGRKIVELEVENRGL 620
Cdd:pfam11365 81 LSGKVMKLQYENRVL 95
|
|
| SOGA |
pfam11365 |
Protein SOGA; The SOGA (suppressor of glucose by autophagy) family consists of proteins SOGA1, ... |
655-747 |
3.68e-38 |
|
Protein SOGA; The SOGA (suppressor of glucose by autophagy) family consists of proteins SOGA1, SOGA2, and SOGA3. SOGA1 regulates autophagy by playing a role in the reduction of glucose production in an adiponectin and insulin dependent manner.
Pssm-ID: 463264 [Multi-domain] Cd Length: 95 Bit Score: 138.20 E-value: 3.68e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 655 SSTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPPREPGWLGEGASPGA--GGGAPLQEELKSARLQISE 732
Cdd:pfam11365 1 SSAELRRQLQFVEEEAELLRRSLSEIEDHNKQLTNELNKYKSKYGPDESSLSDGEGGGSdsSREAELQEELKLARLQINE 80
|
90
....*....|....*
gi 2217316427 733 LSGKVLKLQHENHAL 747
Cdd:pfam11365 81 LSGKVMKLQYENRVL 95
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
12-326 |
1.50e-14 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 80.37 E-value: 1.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 12 APDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPFL----KDLHARPAAPGPAVP---------SSGRAPAPAAPRSP 78
Cdd:PHA03247 2563 APDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRApvddRGDPRGPAPPSPLPPdthapdpppPSPSPAANEPDPHP 2642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 79 NLAGKAPPSPGSLAAPGRLSR----RSGGVPGAKDKPPpgagaraaggakaALGSRRAARvAPAEPLSRAGKPPGAEPPS 154
Cdd:PHA03247 2643 PPTVPPPERPRDDPAPGRVSRprraRRLGRAAQASSPP-------------QRPRRRAAR-PTVGSLTSLADPPPPPPTP 2708
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 155 AAAKgRKAKRGSRAPP----ARTVGPPTPAARIPAVTLAVTSVAGSPARCSRiSHTDSSSDLSDCPSEPLSDEQRLLPAA 230
Cdd:PHA03247 2709 EPAP-HALVSATPLPPgpaaARQASPALPAAPAPPAVPAGPATPGGPARPAR-PPTTAGPPAPAPPAAPAAGPPRRLTRP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 231 SSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVS------GGFAGPGvaEDVRG 304
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPppslplGGSVAPG--GDVRR 2864
|
330 340
....*....|....*....|....
gi 2217316427 305 RSPPERPV--PGTPKEPSLGEQSR 326
Cdd:PHA03247 2865 RPPSRSPAakPAAPARPPVRRLAR 2888
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
350-681 |
1.15e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 1.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSyLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVAK 429
Cdd:TIGR02168 689 LEEKIAELEKALAELRKE-LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 430 DVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKtfnqnggmerpgnc 509
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-------------- 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 510 rpatKTQRKLAPRRKDDSADLRCQLQFAKEEaflmrkkMAKLGREKDELEQELQKYKSLYGDVDSPLptgeaggppstre 589
Cdd:TIGR02168 834 ----AATERRLEDLEEQIEELSEDIESLAAE-------IEELEELIEELESELEALLNERASLEEAL------------- 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 590 AELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPTSPFGDSLEsstELRRHLQFVEEE 669
Cdd:TIGR02168 890 ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDD 966
|
330
....*....|..
gi 2217316427 670 AELLRRSISEIE 681
Cdd:TIGR02168 967 EEEARRRLKRLE 978
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
7-316 |
2.44e-10 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 65.96 E-value: 2.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 7 PAGGGAPDAklqPPGQHHRHHHLHPVAERRRLHRAPSPA-RPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAP 85
Cdd:PHA03307 122 PPASPPPSP---APDLSEMLRPVGSPGPPPAASPPAAGAsPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 86 PSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSR-RAARVAPAEPLSRAGKPPGAEPPSAAAKGRKAKR 164
Cdd:PHA03307 199 PAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSEsSGCGWGPENECPLPRPAPITLPTRIWEASGWNGP 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 165 GSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDRE 244
Cdd:PHA03307 279 SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPP 358
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217316427 245 PPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGP-----GVAEDVRGRSPPERPVPGTP 316
Cdd:PHA03307 359 PADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGrprpsPLDAGAASGAFYARYPLLTP 435
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
10-319 |
9.82e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 64.19 E-value: 9.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 10 GGAPDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPG 89
Cdd:PHA03247 2639 DPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSA 2718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 90 SLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAAR---VAPAEPLSRAGKPPGAEPPSAAAKGRKAKRGS 166
Cdd:PHA03247 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTagpPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 167 RAPPARTVGPPTPAARIPAVTLAVTSVAGSPArcsrishtdSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSsdREPP 246
Cdd:PHA03247 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPP---------PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVR--RRPP 2867
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217316427 247 RGAPTPSPAARGAPPGSPEPPALLAAPLAAGACP--GGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEP 319
Cdd:PHA03247 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPpdQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
39-331 |
6.12e-09 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 61.34 E-value: 6.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 39 HRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLS--RRSGGVPGAKDKPPPGAG 116
Cdd:PHA03307 77 TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEmlRPVGSPGPPPAASPPAAG 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 117 ARAAGGAKAALGSRRAARVAP-----AEPLSRAGKPPGAEPPSAAAKGRKAKRGS----RAPPARTVGPPTPAARIPAvt 187
Cdd:PHA03307 157 ASPAAVASDAASSRQAALPLSspeetARAPSSPPAEPPPSTPPAAASPRPPRRSSpisaSASSPAPAPGRSAADDAGA-- 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 188 lAVTSVAGSPARCSRISHTDSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPP 267
Cdd:PHA03307 235 -SSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPR 313
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217316427 268 ALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSRLVPAA 331
Cdd:PHA03307 314 ASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS 377
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
8-330 |
1.19e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 60.72 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 8 AGGGAPDAKLQPPGQHHRHHHLHPVAERRRlHRAPSPARPflkdlharPAAPGPAVPSSGRapapaaprspnlAGKAPPS 87
Cdd:PHA03247 2728 ARQASPALPAAPAPPAVPAGPATPGGPARP-ARPPTTAGP--------PAPAPPAAPAAGP------------PRRLTRP 2786
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 88 PGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPP--SAAAKGRKAKRG 165
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLggSVAPGGDVRRRP 2866
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 166 -SRAPPARTVGPPTPAAR---IPAVTLAVTSVAGSPARCSRISHTDSssdlsdcPSEPLSDEQRLLPAASSDAEsgtgss 241
Cdd:PHA03247 2867 pSRSPAAKPAAPARPPVRrlaRPAVSRSTESFALPPDQPERPPQPQA-------PPPPQPQPQPPPPPQPQPPP------ 2933
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 242 drePPRGAPTPSPAARGAPPGSPEppallaaplAAGACPGGRSipsgvsgGFAGPGVAEDVRGRSPPERPVPGTPKEPSL 321
Cdd:PHA03247 2934 ---PPPPRPQPPLAPTTDPAGAGE---------PSGAVPQPWL-------GALVPGRVAVPRFRVPQPAPSREAPASSTP 2994
|
....*....
gi 2217316427 322 GEQSRLVPA 330
Cdd:PHA03247 2995 PLTGHSLSR 3003
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
352-567 |
2.12e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.54 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 352 DELDELRAEMEEMRDSY--LEedvyQLQELRRELDRANKNCRILQYRLRKAEqkslkvAETGQVDGELIRSLEQDLKVAK 429
Cdd:COG4913 235 DDLERAHEALEDAREQIelLE----PIRELAERYAAARERLAELEYLRAALR------LWFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 430 DvsvRLHHELKTVEEKRAKAEDENETLRQQMIEVE-ISKQALQNELERLKESSLKRRSTREMYKEK-KTFnqngGMERPG 507
Cdd:COG4913 305 A---RLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALlAAL----GLPLPA 377
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 508 NcRPATKTQRKLAPRRKDDSADLRCQLQfakEEAFLMRKKMAKLGREKDELEQELQKYKS 567
Cdd:COG4913 378 S-AEEFAALRAEAAALLEALEEELEALE---EALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
351-733 |
3.60e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 3.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 351 KDELDELRAEMEEMrDSYLEEDVYQLQELRRELDRANKNcRILQYRLRKAEQ----KSLKVAETG--QVDGElIRSLEQD 424
Cdd:TIGR02169 176 LEELEEVEENIERL-DLIIDEKRQQLERLRREREKAERY-QALLKEKREYEGyellKEKEALERQkeAIERQ-LASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 425 LkvaKDVSVRLHHELKTVEEKRAKAEDENETLRqQMIEVEISkqALQNELERLKessLKRRSTREMYKEKKtfnqnggme 504
Cdd:TIGR02169 253 L---EKLTEEISELEKRLEEIEQLLEELNKKIK-DLGEEEQL--RVKEKIGELE---AEIASLERSIAEKE--------- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 505 rpgncrpatKTQRKLAPRRKDDSADLRCQlqfaKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLptgeagGP 584
Cdd:TIGR02169 315 ---------RELEDAEERLAKLEAEIDKL----LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL------EE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 585 PSTREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMedmrgqQEREGPGRDHAPSIPtspfgDSLESSTELrrhlq 664
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL------QRLSEELADLNAAIA-----GIEAKINEL----- 439
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217316427 665 fvEEEAELLRRSISEIEDHNRQLTHELSKFKFEpprepgwlgegASPGAGGGAPLQEELKSARLQISEL 733
Cdd:TIGR02169 440 --EEEKEDKALEIKKQEWKLEQLAADLSKYEQE-----------LYDLKEEYDRVEKELSKLQRELAEA 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
353-567 |
4.61e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 4.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 353 ELDELRAEMEEMRDsylEEDVYQ--LQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQ-------VDGELIRSLEQ 423
Cdd:TIGR02168 268 KLEELRLEVSELEE---EIEELQkeLYALANEISRLEQQKQILRERLANLERQLEELEAQLEeleskldELAEELAELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 424 DLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQM-------IEVEISKQALQNELERLKE--SSLKRRSTRemykek 494
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLetlrskvAQLELQIASLNNEIERLEArlERLEDRRER------ 418
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217316427 495 ktFNQNGGMERPGNCRPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKS 567
Cdd:TIGR02168 419 --LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
350-687 |
5.60e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.86 E-value: 5.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSYLE--------EDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETgqvdGELIRSL 421
Cdd:COG4717 93 LQEELEELEEELEELEAELEElreeleklEKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL----EEELEEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 422 EQDLKVAK--------DVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKE 493
Cdd:COG4717 169 EAELAELQeeleelleQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 494 KKTFNQNGGM-ERPGNCRPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGR--EKDELEQ-ELQKYKSLY 569
Cdd:COG4717 249 RLLLLIAAALlALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAlpALEELEEeELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 570 GdVDSPLPTGEAGGPPST-----------REAELKLRLKLVEEEANILG-----------RKIVELEVENRGLKAEMEDM 627
Cdd:COG4717 329 G-LPPDLSPEELLELLDRieelqellreaEELEEELQLEELEQEIAALLaeagvedeeelRAALEQAEEYQELKEELEEL 407
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217316427 628 RGQQEREGPGRDHAPSIPTspfGDSLES-STELRRHLQFVEEEAELLRRSISEIEDHNRQL 687
Cdd:COG4717 408 EEQLEELLGELEELLEALD---EEELEEeLEELEEELEELEEELEELREELAELEAELEQL 465
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
85-331 |
6.49e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 58.41 E-value: 6.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 85 PPSPGSLAAPGRLSRRSggVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPlsrAGKPPGAEPPSAAAKGRKAKR 164
Cdd:PHA03247 2551 PPPPLPPAAPPAAPDRS--VPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDD---RGDPRGPAPPSPLPPDTHAPD 2625
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 165 ---GSRAPPARTVGPPTPAARIPAvtlAVTSVAGSPARCSRISHTDSSSDlsdcPSEPLSDEQRLLPAASSDAESGTGSS 241
Cdd:PHA03247 2626 pppPSPSPAANEPDPHPPPTVPPP---ERPRDDPAPGRVSRPRRARRLGR----AAQASSPPQRPRRRAARPTVGSLTSL 2698
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 242 DREPPRGaPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSL 321
Cdd:PHA03247 2699 ADPPPPP-PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAA 2777
|
250
....*....|
gi 2217316427 322 GEQSRLVPAA 331
Cdd:PHA03247 2778 GPPRRLTRPA 2787
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
7-264 |
8.20e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 57.55 E-value: 8.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 7 PAGGGAPDAKLQPP---GQHHRHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGK 83
Cdd:PRK07003 362 VTGGGAPGGGVPARvagAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDD 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 84 APPSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGRKAK 163
Cdd:PRK07003 442 AADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDA 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 164 RGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCS--RIShtdsssdlsdcpseplSDEQRLLPAASSDAESGTGSS 241
Cdd:PRK07003 522 PAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAgmRVS----------------SDRGARAAAAAKPAAAPAAAP 585
|
250 260
....*....|....*....|....
gi 2217316427 242 DREPPRGA-PTPSPAARGAPPGSP 264
Cdd:PRK07003 586 KPAAPRVAvQVPTPRARAATGDAP 609
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
350-567 |
9.35e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.42 E-value: 9.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDsyleedvyqlqELRRELDRANKNCRILQYRLRKAEqKSLKVAETG------QVD--GELIRSL 421
Cdd:pfam05483 546 LRDELESVREEFIQKGD-----------EVKCKLDKSEENARSIEYEVLKKE-KQMKILENKcnnlkkQIEnkNKNIEEL 613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 422 EQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQAlQNELERLKESSLkrrsTREMYKEKKTFNQng 501
Cdd:pfam05483 614 HQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQK-EIEDKKISEEKL----LEEVEKAKAIADE-- 686
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217316427 502 gmerpgncrpATKTQRKLaprrkddsaDLRCQLQFAkEEAFLMRKKMAKLGREKDELEQELQKYKS 567
Cdd:pfam05483 687 ----------AVKLQKEI---------DKRCQHKIA-EMVALMEKHKHQYDKIIEERDSELGLYKN 732
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
133-383 |
1.70e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 56.53 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 133 ARVAPAEPLSRAGKPPGAEPPSAAAKGRKAKRGSR-APPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSSSD 211
Cdd:PRK07764 586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAApAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 212 LSDCPSEPLSdeqrllPAASSDAESGTGSSDRePPRGAPTPSPAARGAPPGSPEPPallaaplaagacPGGRSIPSGVSG 291
Cdd:PRK07764 666 GDGWPAKAGG------AAPAAPPPAPAPAAPA-APAGAAPAQPAPAPAATPPAGQA------------DDPAAQPPQAAQ 726
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 292 GFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSRLVPAAEEEELLREMEELRSEndylkdELDELRAEMEEMRDSYLEE 371
Cdd:PRK07764 727 GASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE------EEEMAEDDAPSMDDEDRRD 800
|
250
....*....|...
gi 2217316427 372 -DVYQLQELRREL 383
Cdd:PRK07764 801 aEEVAMELLEEEL 813
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
81-331 |
2.00e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 56.40 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 81 AGKAPPS-PGSLAAPGrlsRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKG 159
Cdd:PRK07003 369 GGGVPARvAGAVPAPG---ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADG 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 160 RKAKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARcsrishtdsssdlSDCPSEPLSdeqrllPAASSDAESGTG 239
Cdd:PRK07003 446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP-------------PDAAFEPAP------RAAAPSAATPAA 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 240 SSDREPPRGAPTPSPAARGAPPgSPEPPALLAAPLAAGACPGGRSIP---------------SGVSGGFAGPGVAEDVRG 304
Cdd:PRK07003 507 VPDARAPAAASREDAPAAAAPP-APEARPPTPAAAAPAARAGGAAAAldvlrnagmrvssdrGARAAAAAKPAAAPAAAP 585
|
250 260 270
....*....|....*....|....*....|
gi 2217316427 305 RSPPERP---VPgTPKEPSLGEQSRLVPAA 331
Cdd:PRK07003 586 KPAAPRVavqVP-TPRARAATGDAPPNGAA 614
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
350-695 |
2.40e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 2.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEmrdsyLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQdLKVAK 429
Cdd:PRK03918 219 LREELEKLEKEVKE-----LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEKA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 430 DVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNQNGGMERPGNC 509
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 510 RpATKTQRKLAPRRKDDSADLRCQLQFAKEEaflMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTRE 589
Cdd:PRK03918 373 E-LERLKKRLTGLTPEKLEKELEELEKAKEE---IEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 590 AELKLRLKLVEEEANILGRKIvELEVENRGLKAEMEDMRGQQEREgpgRDHAPSIPTSPFGDSLESSTEL--RRHLQFVE 667
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELK-EIEEKERKLRKELRELEKVLKKE---SELIKLKELAEQLKELEEKLKKynLEELEKKA 524
|
330 340
....*....|....*....|....*...
gi 2217316427 668 EEAELLRRSISEIEDHNRQLTHELSKFK 695
Cdd:PRK03918 525 EEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
370-697 |
3.46e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 370 EEDVYQLQELRRELDRANKNCRI-----LQYRLRKAEQKSLKVAETGQVDGELIRSLEQdLKVAKDVSVRLHHELktvEE 444
Cdd:TIGR02168 185 RENLDRLEDILNELERQLKSLERqaekaERYKELKAELRELELALLVLRLEELREELEE-LQEELKEAEEELEEL---TA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 445 KRAKAEDENETLRQQMIEVEISKQALQNELERLKE--SSLKRRstREMYKEKktfnqnggMERPGNCRPATKTQRKLAPR 522
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANeiSRLEQQ--KQILRER--------LANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 523 RKD----DSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVdsplptgeaggppSTREAELKLRLKL 598
Cdd:TIGR02168 331 KLDelaeELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL-------------RSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 599 VEEEANILGRKIVELEVENRGLKAEMEDMRGQQErEGPGRDHAPSIPTSPfgdslESSTELRRHLQFVEEEAELLRRSIS 678
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLE-EAELKELQAELEELE-----EELEELQEELERLEEALEELREELE 471
|
330
....*....|....*....
gi 2217316427 679 EIEDHNRQLTHELSKFKFE 697
Cdd:TIGR02168 472 EAEQALDAAERELAQLQAR 490
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
348-693 |
3.62e-07 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 54.52 E-value: 3.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 348 DYLKDELDELRAEMEEMRDsyleedvyQLQELRRELDRANKNCRILQYRLRKAEQKsLKVAEtgqvdgELIRSLEQDLKV 427
Cdd:COG4372 41 DKLQEELEQLREELEQARE--------ELEQLEEELEQARSELEQLEEELEELNEQ-LQAAQ------AELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 428 AKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKEsslKRRSTREMYKEKKTFNQNggmerpg 507
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEE---QLESLQEELAALEQELQA------- 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 508 ncRPATKTQRKLAPRRKddsaDLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPST 587
Cdd:COG4372 176 --LSEAEAEQALDELLK----EANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKE 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 588 ---REAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPTSPFGDSLESSTELRRHLQ 664
Cdd:COG4372 250 ellEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLE 329
|
330 340
....*....|....*....|....*....
gi 2217316427 665 FVEEEAELLRRSISEIEDHNRQLTHELSK 693
Cdd:COG4372 330 LALAILLAELADLLQLLLVGLLDNDVLEL 358
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
39-317 |
3.97e-07 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 55.56 E-value: 3.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 39 HRAPSPARPFLKDLHARPAA--PGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAP---GRLSRRSGGVPGAKDKP-P 112
Cdd:PHA03307 118 PPTPPPASPPPSPAPDLSEMlrPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPlssPEETARAPSSPPAEPPPsT 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 113 PGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGRKAKRGSRA-----PPARTVGPPTPAARIPAVT 187
Cdd:PHA03307 198 PPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENecplpRPAPITLPTRIWEASGWNG 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 188 LAVTSVAGSPARCSRISHTDSSSDLSDCPSEP----LSDEQRLLPAASSDAESGTGSSDREP--PRGA-----PTPSPAA 256
Cdd:PHA03307 278 PSSRPGPASSSSSPRERSPSPSPSSPGSGPAPssprASSSSSSSRESSSSSTSSSSESSRGAavSPGPspsrsPSPSRPP 357
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217316427 257 RGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPK 317
Cdd:PHA03307 358 PPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLD 418
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
60-265 |
5.38e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.99 E-value: 5.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 60 GPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAE 139
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 140 PLSRAGKPPGAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAARipavtlAVTSVAGSPARCSRISHTDSSSDLSDCPSEP 219
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG------QADDPAAQPPQAAQGASAPSPAADDPVPLPP 743
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2217316427 220 LSDEQRLLPAASSDAESGTGSSDREPPrgAPTPSPAARGAPPGSPE 265
Cdd:PRK07764 744 EPDDPPDPAGAPAQPPPPPAPAPAAAP--AAAPPPSPPSEEEEMAE 787
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
443-794 |
5.45e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 5.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 443 EEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNqngGMERPGNCRPATKTQRKLAPR 522
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYE---GYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 523 RkddsADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSlygdvDSPLPTGEAGGPPSTREAELKLRLKLVEEE 602
Cdd:TIGR02169 246 L----ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE-----EEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 603 ANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHApsipTSPFGDSLESSTELRRHLQFVEEEAELLRRSISEIED 682
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL----TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 683 HNRQLTHELSKFKFEPPRepgwLGEGASPGAGGGAPLQEELKSARLQISELSGKVLKLQHENHALLSNIQRcdLAAHLGl 762
Cdd:TIGR02169 393 KLEKLKREINELKRELDR----LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ--LAADLS- 465
|
330 340 350
....*....|....*....|....*....|..
gi 2217316427 763 rapsprDSDAESDAGKKESDGEESRLPQPKRE 794
Cdd:TIGR02169 466 ------KYEQELYDLKEEYDRVEKELSKLQRE 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
350-634 |
8.57e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 8.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDsyleedvyQLQELRRELDRANKNCRILQYRLRKAEQKslkvaetgqvdgelIRSLEQDLKVAK 429
Cdd:COG1196 258 LEAELAELEAELEELRL--------ELEELELELEEAQAEEYELLAELARLEQD--------------IARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 430 DVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKtfnqnggmerpgnc 509
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL-------------- 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 510 rpATKTQRKLAPRRkdDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVdsplptgeaggppSTRE 589
Cdd:COG1196 382 --EELAEELLEALR--AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE-------------EEAL 444
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2217316427 590 AELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQERE 634
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
6-264 |
1.31e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 53.73 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 6 GPAGGGAPDAklqppgqhhrHHHLHPVAERRRLHRAPSPARPflkdlharPAAPGPAVPSSGRAPAPAAPRSPNLAGKAP 85
Cdd:PRK12323 366 GQSGGGAGPA----------TAAAAPVAQPAPAAAAPAAAAP--------APAAPPAAPAAAPAAAAAARAVAAAPARRS 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 86 PSPGSLAAP-GRLSRRSGGVPGAKDKPPPGAgaraaggakaalgsrrAARVAPAEPLSRAGKPPGAEPPSAAAKGRKAKR 164
Cdd:PRK12323 428 PAPEALAAArQASARGPGGAPAPAPAPAAAP----------------AAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 165 GSRAPPARTVGPPTPAARIPAvtlavtsvagsparcsrishtDSSSDLSDCPSEPLSDEqrllpaaSSDAESGTGSSDRE 244
Cdd:PRK12323 492 ADDDPPPWEELPPEFASPAPA---------------------QPDAAPAGWVAESIPDP-------ATADPDDAFETLAP 543
|
250 260
....*....|....*....|
gi 2217316427 245 PPRGAPTPSPAARGAPPGSP 264
Cdd:PRK12323 544 APAAAPAPRAAAATEPVVAP 563
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
346-920 |
1.46e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.51 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 346 ENDYLKDE----LDELRAEMEEMRD-SYLEEDVYQLQELRRelDRANKNCRILQYRLRKAEQKSLKVAE---TGQVDgEL 417
Cdd:TIGR00606 502 EVKSLQNEkadlDRKLRKLDQEMEQlNHHTTTRTQMEMLTK--DKMDKDEQIRKIKSRHSDELTSLLGYfpnKKQLE-DW 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 418 IRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVE------ISKQALQNELERLKESSLKRRSTREMY 491
Cdd:TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEdklfdvCGSQDEESDLERLKEEIEKSSKQRAML 658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 492 KEK----KTFNQNGGMERPGNCrPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKS 567
Cdd:TIGR00606 659 AGAtavySQFITQLTDENQSCC-PVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS 737
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 568 LYGDVDSPLP-TGEAGGPPSTREAELKLRLklvEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPT 646
Cdd:TIGR00606 738 IIDLKEKEIPeLRNKLQKVNRDIQRLKNDI---EEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK 814
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 647 SPFGDSLESSTELRrhlQFVEEEAELLRRSISEIE-------DHNRQLTHELSKFKfepprepgwlgegaspgagggapl 719
Cdd:TIGR00606 815 LQGSDLDRTVQQVN---QEKQEKQHELDTVVSKIElnrkliqDQQEQIQHLKSKTN------------------------ 867
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 720 qeELKSARLQISELSGKVLKLQHENHALLSNIQRCDLAAHLGLRAPSPRDSDAESDAGKKE----SDGEESRLPQPKREg 795
Cdd:TIGR00606 868 --ELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEelisSKETSNKKAQDKVN- 944
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 796 pvggesDSEEMFEKTSGFGSGKPSEASEPCPTELL-KAREDSEYLVTLKHEAQRLERTVERLITDTDSFlhdaglrggap 874
Cdd:TIGR00606 945 ------DIKEKVKNIHGYMKDIENKIQDGKDDYLKqKETELNTVNAQLEECEKHQEKINEDMRLMRQDI----------- 1007
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 2217316427 875 lpgpglqGEEEQGEGDQQEPQLLGTINAKMKAFKKELQAFLEQVNR 920
Cdd:TIGR00606 1008 -------DTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQ 1046
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
350-750 |
1.51e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRD------SYLEEDVYQLQELRRELDRANKNCRILQYRLR--KAEQKSLKvaetGQVDGELIRSL 421
Cdd:TIGR04523 237 KQQEINEKTTEISNTQTqlnqlkDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNqlKSEISDLN----NQKEQDWNKEL 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 422 EQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERlKESSLKRrstreMYKEKKTFNQNg 501
Cdd:TIGR04523 313 KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEE-KQNEIEK-----LKKENQSYKQE- 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 502 gmerpgncrpatktQRKLaprrKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEa 581
Cdd:TIGR04523 386 --------------IKNL----ESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 582 ggppsTREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMrgQQEREGPGRDHapSIPTSPFGDSLESSTELRR 661
Cdd:TIGR04523 447 -----NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK--QKELKSKEKEL--KKLNEEKKELEEKVKDLTK 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 662 HLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFepprepgwlgegaspgagggaplqeELKSARL--QISELSGKVLK 739
Cdd:TIGR04523 518 KISSLKEKIEKLESEKKEKESKISDLEDELNKDDF-------------------------ELKKENLekEIDEKNKEIEE 572
|
410
....*....|.
gi 2217316427 740 LQHENHALLSN 750
Cdd:TIGR04523 573 LKQTQKSLKKK 583
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
346-484 |
1.53e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 346 ENDYLKDELDELRAEMEEMRDSYLEEDVyQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDL 425
Cdd:TIGR02169 351 RRDKLTEEYAELKEELEDLRAELEEVDK-EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI 429
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217316427 426 KVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKE--SSLKR 484
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKelSKLQR 490
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
350-614 |
3.23e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 3.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSY---------LEEDVY----QLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGE 416
Cdd:COG1196 272 LRLELEELELELEEAQAEEyellaelarLEQDIArleeRRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 417 LIRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKT 496
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 497 FNQnggmERPGNCRPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDvdspl 576
Cdd:COG1196 432 ELE----EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD----- 502
|
250 260 270
....*....|....*....|....*....|....*...
gi 2217316427 577 ptgEAGGPPSTREAELKLRLKLVEEEANILGRKIVELE 614
Cdd:COG1196 503 ---YEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
54-313 |
3.24e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 52.54 E-value: 3.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 54 ARPAAPGPAVPSS-----GRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLSRRSGGVPGAKD-------KPPPGAGARAAG 121
Cdd:PRK07003 361 AVTGGGAPGGGVParvagAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATraeappaAPAPPATADRGD 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 122 GAKAALGSRRAARVAPAEPLSRAGkPPGAEPPSAAAKgrKAKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCS 201
Cdd:PRK07003 441 DAADGDAPVPAKANARASADSRCD-ERDAQPPADSGS--ASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 202 RishtdssSDLSDCPSEPLSDEQRLLPAASSDAESGTG---------------SSDREPPRGAPTPSPAARGAPPGSPEP 266
Cdd:PRK07003 518 R-------EDAPAAAAPPAPEARPPTPAAAAPAARAGGaaaaldvlrnagmrvSSDRGARAAAAAKPAAAPAAAPKPAAP 590
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2217316427 267 PALLAAPLaagacPGGRSIPSGVSGGFAGPGV-AEDVRGRSPPERPVP 313
Cdd:PRK07003 591 RVAVQVPT-----PRARAATGDAPPNGAARAEqAAESRGAPPPWEDIP 633
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
351-644 |
3.52e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.36 E-value: 3.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 351 KDELDELR---AEMEEMRDSYLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLkv 427
Cdd:TIGR00606 244 ENELDPLKnrlKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKEREL-- 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 428 akdvsVRLHHELKtveekraKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREmykEKKTFNQNGGMERPG 507
Cdd:TIGR00606 322 -----VDCQRELE-------KLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQ---SLATRLELDGFERGP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 508 NCRPATKTQRKLAPRRKDDSA--------DLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTG 579
Cdd:TIGR00606 387 FSERQIKNFHTLVIERQEDEAktaaqlcaDLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL 466
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217316427 580 EaGGPPSTREAELKLR-----LKLVEEEANILGRKIVELEVEN------RGLKAEMEDMRgQQEREGPGRDHAPSI 644
Cdd:TIGR00606 467 E-GSSDRILELDQELRkaereLSKAEKNSLTETLKKEVKSLQNekadldRKLRKLDQEME-QLNHHTTTRTQMEML 540
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
350-485 |
4.16e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 4.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSYLEEDVYQLQELRRELDRANKncrilqyRLRKAEQKSLKVAetgqvdgELIRSLEQDLKVAK 429
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGGDRLEQLEREIERLER-------ELEERERRRARLE-------ALLAALGLPLPASA 379
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217316427 430 DVSVRLHHELKtveEKRAKAEDENETLRQQMIEVEISKQALQNELERLKE--SSLKRR 485
Cdd:COG4913 380 EEFAALRAEAA---ALLEALEEELEALEEALAEAEAALRDLRRELRELEAeiASLERR 434
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-634 |
5.60e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 5.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 351 KDELDELRAEMEEMRDSylEEDVYQLQELRRELDRANKNCRILQY--RLRKAEQK----SLKVAETGQVDGELIRSLE-- 422
Cdd:PTZ00121 1469 AKKADEAKKKAEEAKKA--DEAKKKAEEAKKKADEAKKAAEAKKKadEAKKAEEAkkadEAKKAEEAKKADEAKKAEEkk 1546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 423 --QDLKVAKDVsvRLHHELKTVEEKRAKAEDENETLRQqmieVEISKQAlqnELERLKESSLKRRSTREMYKE--KKTFN 498
Cdd:PTZ00121 1547 kaDELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRK----AEEAKKA---EEARIEEVMKLYEEEKKMKAEeaKKAEE 1617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 499 QNGGMERpgnCRPATKTQRKLAPRRKDDSADLRCQLQFAKEEaflmRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPT 578
Cdd:PTZ00121 1618 AKIKAEE---LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE----EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217316427 579 GEAggppSTREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQERE 634
Cdd:PTZ00121 1691 AEA----LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
345-686 |
6.41e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 6.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 345 SENDYLKDELDELRAEMEEMRDsyleedvyQLQELRRELDRANKNCRILQYRLRKAEQKslkvaetgqvdgelIRSLEQD 424
Cdd:TIGR02169 695 SELRRIENRLDELSQELSDASR--------KIGEIEKEIEQLEQEEEKLKERLEELEED--------------LSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 425 LKVAKDVSVRLHHELKTVEEKRAKAEDENETL-----RQQMIEVEISKQALQNELERLK------ESSLKRRSTREMYKE 493
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEarlreiEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 494 KKtfnqnggMERPGNCRPATKTQRKLAPRRKDDS-ADLRCQLQFAKE-EAFL--MRKKMAKLGREKDELEQELQKYKSLY 569
Cdd:TIGR02169 833 KE-------IQELQEQRIDLKEQIKSIEKEIENLnGKKEELEEELEElEAALrdLESRLGDLKKERDELEAQLRELERKI 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 570 GDVDSPLPTGEaggppsTREAELKLRLKLVEEEANILGRKIVELEVEN------RGLKAEMEDMRGQQEREGPGRDHAPs 643
Cdd:TIGR02169 906 EELEAQIEKKR------KRLSELKAKLEALEEELSEIEDPKGEDEEIPeeelslEDVQAELQRVEEEIRALEPVNMLAI- 978
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2217316427 644 iptSPFGDSLESSTELRRHLQFVEEEAELLRRSISEIEDHNRQ 686
Cdd:TIGR02169 979 ---QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
358-566 |
9.92e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 9.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 358 RAEMEEMRDSYLEEDVYQLQELRREldranKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVAKDVSVRLHH 437
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKA-----EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE 1665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 438 ELKTVEEKRAKAEdenETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYK--EKKTFNQNGGMERPGNCRPATKT 515
Cdd:PTZ00121 1666 EAKKAEEDKKKAE---EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaeELKKAEEENKIKAEEAKKEAEED 1742
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2217316427 516 QRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYK 566
Cdd:PTZ00121 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
350-695 |
1.14e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 50.51 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEmRDSYLEEDVYQLQELRRELDRANKNCR---ILQYRLRKAeQKSLKVAEtgQVDGELIRSL---EQ 423
Cdd:pfam05557 109 LKNELSELRRQIQR-AELELQSTNSELEELQERLDLLKAKASeaeQLRQNLEKQ-QSSLAEAE--QRIKELEFEIqsqEQ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 424 DLKVAKDVSVRLHhELKTVEEKRAKAEDENETLRQQMIEVEISKQ---ALQNELERLKES-------SLKRRSTREMYKE 493
Cdd:pfam05557 185 DSEIVKNSKSELA-RIPELEKELERLREHNKHLNENIENKLLLKEeveDLKRKLEREEKYreeaatlELEKEKLEQELQS 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 494 KKTFNQNGGME--RPGNCRPATKT--QRKLAPRRKDDSAD-----LRCQLQFAKEEAFLMRKKMAKL--GREK-DELEQE 561
Cdd:pfam05557 264 WVKLAQDTGLNlrSPEDLSRRIEQlqQREIVLKEENSSLTssarqLEKARRELEQELAQYLKKIEDLnkKLKRhKALVRR 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 562 LQK-----------YKSLYGDVDSPLPTGEAGGPPSTREAEL-----KLRLKLVEEEANI--LGRKIVELEVENRGLKAE 623
Cdd:pfam05557 344 LQRrvllltkerdgYRAILESYDKELTMSNYSPQLLERIEEAedmtqKMQAHNEEMEAQLsvAEEELGGYKQQAQTLERE 423
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217316427 624 MEDMRGQQEREGPGRdhapsiptspfgdSLESSTELRRHLQFVEEEAELLRRSI----SEIEDHNRQLTHELSKFK 695
Cdd:pfam05557 424 LQALRQQESLADPSY-------------SKEEVDSLRRKLETLELERQRLREQKneleMELERRCLQGDYDPKKTK 486
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
350-695 |
1.16e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEmrdsyLEEDVYQLQELRRELDRANK--------NCRILQYRLRKAEQKSLKVAETGQVDGELIRSL 421
Cdd:PRK03918 343 LKKKLKELEKRLEE-----LEERHELYEEAKAKKEELERlkkrltglTPEKLEKELEELEKAKEEIEEEISKITARIGEL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 422 EQ----------DLKVAK----------------DVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVE--ISKQ----A 469
Cdd:PRK03918 418 KKeikelkkaieELKKAKgkcpvcgrelteehrkELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvLKKEseliK 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 470 LQNELERLK--ESSLKRRSTREMYKEKKTF----NQNGGMErpGNCRPATKTQRKLAPRRKdDSADLRCQLQFAKEEAFL 543
Cdd:PRK03918 498 LKELAEQLKelEEKLKKYNLEELEKKAEEYeklkEKLIKLK--GEIKSLKKELEKLEELKK-KLAELEKKLDELEEELAE 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 544 MRKKMAKLGREK-DELEQELQKYKSLYGDVDsplptgEAGGPPSTREAELKlRLKLVEEEANILGRKIVELEVENRGLKA 622
Cdd:PRK03918 575 LLKELEELGFESvEELEERLKELEPFYNEYL------ELKDAEKELEREEK-ELKKLEEELDKAFEELAETEKRLEELRK 647
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217316427 623 EMEDMR---GQQEREGPGRDHapsiptspfgdslessTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFK 695
Cdd:PRK03918 648 ELEELEkkySEEEYEELREEY----------------LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
375-564 |
3.32e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 48.98 E-value: 3.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 375 QLQELRRELDRANKNcriLQYRLRKAEQKSLKVAETGQVD----GELIRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAE 450
Cdd:pfam07111 482 ELEQLREERNRLDAE---LQLSAHLIQQEVGRAREQGEAErqqlSEVAQQLEQELQRAQESLASVGQQLEVARQGQQEST 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 451 DENETLRQQMI-EVEISKQALQN---ELE-RLKE--SSLKRR---STREMYKEKKTFNQnggmerpgncrpatkTQRKlA 520
Cdd:pfam07111 559 EEAASLRQELTqQQEIYGQALQEkvaEVEtRLREqlSDTKRRlneARREQAKAVVSLRQ---------------IQHR-A 622
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2217316427 521 PRRKDDSADL-RCQLQFAKEEAFLMRKKMAKLGREKDELEQELQK 564
Cdd:pfam07111 623 TQEKERNQELrRLQDEARKEEGQRLARRVQELERDKNLMLATLQQ 667
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
41-297 |
3.52e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 49.01 E-value: 3.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 41 APSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPgsLAAPGRLSRRSGGVPGAKDKPPPGAGARAA 120
Cdd:PHA03307 48 AELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTL--APASPAREGSPTPPGPSSPDPPPPTPPPAS 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 121 GGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAARIPAVTLAV-TSVAGSPAR 199
Cdd:PHA03307 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPsTPPAAASPR 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 200 CSRISHTDSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPA--------ARGAPPGSPEPPALLA 271
Cdd:PHA03307 206 PPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPApitlptriWEASGWNGPSSRPGPA 285
|
250 260
....*....|....*....|....*.
gi 2217316427 272 APLAAGACPGGRSIPSGVSGGFAGPG 297
Cdd:PHA03307 286 SSSSSPRERSPSPSPSSPGSGPAPSS 311
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-800 |
3.75e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 3.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 352 DELDELRAEMEEmrdsyleedvyQLQELRRELDRANKNcRILQYRLRKAEQKSLKVAetgqvdgelIRSLEQDLKVAKDV 431
Cdd:COG1196 189 ERLEDILGELER-----------QLEPLERQAEKAERY-RELKEELKELEAELLLLK---------LRELEAELEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 432 SVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNQNggmerpgncrp 511
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE----------- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 512 atktqrklapRRKDDSADLRcQLQFAKEEAflmRKKMAKLGREKDELEQELQkykslygdvdsplptgeaggppSTREAE 591
Cdd:COG1196 317 ----------RLEELEEELA-ELEEELEEL---EEELEELEEELEEAEEELE----------------------EAEAEL 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 592 LKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHApsiptspfgdslESSTELRRHLQFVEEEAE 671
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE------------ALLERLERLEEELEELEE 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 672 LLRRSISEIEDHNRQLTHELSKfkfepprepgwlgegaspgaggGAPLQEELKSARLQISELSGKVLKLQHENHALLSNI 751
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEE----------------------EAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 2217316427 752 QRCDLAAHLGLRApsprdsdAESDAGKKESDGEESRLPQPKREGPVGGE 800
Cdd:COG1196 487 AEAAARLLLLLEA-------EADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
6-264 |
4.81e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.78 E-value: 4.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 6 GPAGGGAPDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGP----AVPSSGRAPAPAAPRSPNLA 81
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPpptsAQPTAPPPPPGPPPPSLPLG 2853
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 82 GKAPP------------SPGSLAAPGR----------LSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAE 139
Cdd:PHA03247 2854 GSVAPggdvrrrppsrsPAAKPAAPARppvrrlarpaVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPP 2933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 140 PLSRAGKPPGAEPPSAAAKGRKAKR-----------GSRAPPARTVGPPTPAARIPAVTlaVTSVAGSPArcSRISHTDS 208
Cdd:PHA03247 2934 PPPPRPQPPLAPTTDPAGAGEPSGAvpqpwlgalvpGRVAVPRFRVPQPAPSREAPASS--TPPLTGHSL--SRVSSWAS 3009
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 209 SSDLS-DCPSEPLSDEQRLLPAASSDAESGTGSSDREPPR---GAPTPSPAARGAPPGSP 264
Cdd:PHA03247 3010 SLALHeETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERsdlEALDPLPPEPHDPFAHE 3069
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
86-218 |
6.99e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 47.75 E-value: 6.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 86 PSPGSLAAPGRLSRRSGGVPGAKDKPPPGagaraaggakaalgSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGRKAKRG 165
Cdd:PRK14959 373 PSGGGASAPSGSAAEGPASGGAATIPTPG--------------TQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2217316427 166 SRAPPARTVGPPTPAARIPavtlAVTSVAGSPARCSRISHTDSSSDLSDCPSE 218
Cdd:PRK14959 439 APPAPPRSGIPPRPAPRMP----EASPVPGAPDSVASASDAPPTLGDPSDTAE 487
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
55-261 |
7.59e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.95 E-value: 7.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 55 RPAAPGPAVPSSGRAPAPAAprspnlAGKAPPSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAAR 134
Cdd:PRK12323 359 RMLAFRPGQSGGGAGPATAA------AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 135 VAPAEPLSRAGKPPGAEPPSAAAkgrkakrgsrAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSS--SDL 212
Cdd:PRK12323 433 LAAARQASARGPGGAPAPAPAPA----------AAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPpwEEL 502
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2217316427 213 SDCPSEPLSDEQRLLPA-ASSDAESGTGSSDREPPRGAPTPSPAARGAPP 261
Cdd:PRK12323 503 PPEFASPAPAQPDAAPAgWVAESIPDPATADPDDAFETLAPAPAAAPAPR 552
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
350-494 |
1.13e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSYLEEDVyQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDG---ElIRSLEQDLK 426
Cdd:COG1579 29 LPAELAELEDELAALEARLEAAKT-ELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEAlqkE-IESLKRRIS 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217316427 427 VAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVeisKQALQNELERLKESSLKRRSTREMYKEK 494
Cdd:COG1579 107 DLEDEILELMERIEELEEELAELEAELAELEAELEEK---KAELDEELAELEAELEELEAEREELAAK 171
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
354-584 |
1.54e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 354 LDELRAEMEEmrdsyLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGElIRSLEQDLKVAKDVSV 433
Cdd:COG4913 612 LAALEAELAE-----LEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAERE-IAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 434 rlhhELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESslkrrstremykekktfnqnggmerpgncRPAT 513
Cdd:COG4913 686 ----DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-----------------------------LDEL 732
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 514 KTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKM------------AKLGREKDELEQELQKYKSLYGDVDSPLPTGEA 581
Cdd:COG4913 733 QDRLEAAEDLARLELRALLEERFAAALGDAVERELrenleeridalrARLNRAEEELERAMRAFNREWPAETADLDADLE 812
|
...
gi 2217316427 582 GGP 584
Cdd:COG4913 813 SLP 815
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
350-479 |
1.64e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 46.39 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSYL--EEDVYQLQELRRELDRANKNCRILQYRLRKAEQ-------------KSLKVAETGQVD 414
Cdd:pfam06160 303 AEEQNKELKEELERVQQSYTlnENELERVRGLEKQLEELEKRYDEIVERLEEKEVayselqeeleeilEQLEEIEEEQEE 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 415 G-ELIRSLEQDLKVAKDVSVRLHHELKTVE---EKR-------------AKAEDENETLRQQMIEV-----EISKQAL-- 470
Cdd:pfam06160 383 FkESLQSLRKDELEAREKLDEFKLELREIKrlvEKSnlpglpesyldyfFDVSDEIEDLADELNEVplnmdEVNRLLDea 462
|
....*....
gi 2217316427 471 QNELERLKE 479
Cdd:pfam06160 463 QDDVDTLYE 471
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
352-616 |
1.73e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 352 DELDELRAEMEEMRDsyleedvyQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETgqvdgelIRSLEQDLKVAKDv 431
Cdd:COG4942 20 DAAAEAEAELEQLQQ--------EIAELEKELAALKKEEKALLKQLAALERRIAALARR-------IRALEQELAALEA- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 432 svrlhhELKTVEEKRAKAEDENETLRQQMIEV--EISKQALQNELERLkessLKRRSTREMYKEKKTFNQnggmerpgnc 509
Cdd:COG4942 84 ------ELAELEKEIAELRAELEAQKEELAELlrALYRLGRQPPLALL----LSPEDFLDAVRRLQYLKY---------- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 510 rpATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVdsplptgeaggppSTRE 589
Cdd:COG4942 144 --LAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARL-------------EKEL 208
|
250 260
....*....|....*....|....*..
gi 2217316427 590 AELKLRLKLVEEEANILGRKIVELEVE 616
Cdd:COG4942 209 AELAAELAELQQEAEELEALIARLEAE 235
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-687 |
1.76e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 351 KDELDELRaEMEEMRDSyleEDVYQLQELRRELDRANKNCRILQyRLRKAEQK------------------SLKVAETGQ 412
Cdd:PTZ00121 1545 KKKADELK-KAEELKKA---EEKKKAEEAKKAEEDKNMALRKAE-EAKKAEEArieevmklyeeekkmkaeEAKKAEEAK 1619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 413 VDGELIRSLEQDLKVAKDVSVRLHHELKTVEEKRaKAEDENETLRQQMieveiskqALQNELERLKESSLKRRSTREMYK 492
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK-KAEEENKIKAAEE--------AKKAEEDKKKAEEAKKAEEDEKKA 1690
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 493 EKKTFNQNGGMERPGNCRPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDV 572
Cdd:PTZ00121 1691 AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 573 DSPLPTGEAGGPPSTREAELKLRLKLVEEEANILGRKIVELEVENRG-----LKAEMEDMRGQQ--EREGPGRDHAPSIP 645
Cdd:PTZ00121 1771 EEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlvinDSKEMEDSAIKEvaDSKNMQLEEADAFE 1850
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2217316427 646 TSPFGDSLESSTELRRHLQFvEEEAELLRRSISEIE--DHNRQL 687
Cdd:PTZ00121 1851 KHKFNKNNENGEDGNKEADF-NKEKDLKEDDEEEIEeaDEIEKI 1893
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
356-687 |
2.13e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 46.28 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 356 ELRAEMEEMRDSyLEEDVYQLQELRRELDRANKNCRILQYRLRKaeqkslKVAETgQVDGELIRSLEQDLKVAKDVSVRL 435
Cdd:pfam07111 321 QLKAQDLEHRDS-VKQLRGQVAELQEQVTSQSQEQAILQRALQD------KAAEV-EVERMSAKGLQMELSRAQEARRRQ 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 436 HHELKTVEEKrakaedenetLRQQMIEVEISKQALQNELERLKESS--LKRRSTREMYKEKKTFNQNGGMERPGNCRPAT 513
Cdd:pfam07111 393 QQQTASAEEQ----------LKFVVNAMSSTQIWLETTMTRVEQAVarIPSLSNRLSYAVRKVHTIKGLMARKVALAQLR 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 514 KTQRKLAPRRKDDSADLRCQLQFAKEE-----------AFLMRKKMAKlGREKDE------------LEQELQKYKSLYG 570
Cdd:pfam07111 463 QESCPPPPPAPPVDADLSLELEQLREErnrldaelqlsAHLIQQEVGR-AREQGEaerqqlsevaqqLEQELQRAQESLA 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 571 DVDSPLPTGEAGGPPSTREAElKLRLKLVEEEaNILGRKIVE--LEVENRgLKAEMEDM--RGQQERegpgRDHAPSIPT 646
Cdd:pfam07111 542 SVGQQLEVARQGQQESTEEAA-SLRQELTQQQ-EIYGQALQEkvAEVETR-LREQLSDTkrRLNEAR----REQAKAVVS 614
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2217316427 647 -----SPFGDSLESSTELRR-HLQFVEEEAELLRRSISEIE-DHNRQL 687
Cdd:pfam07111 615 lrqiqHRATQEKERNQELRRlQDEARKEEGQRLARRVQELErDKNLML 662
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
82-326 |
2.17e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.70 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 82 GKAPPSPGSLAAPGRLSRRSGGvPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAG-------KPPGAEPPS 154
Cdd:PHA03307 69 TGPPPGPGTEAPANESRSTPTW-SLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPApdlsemlRPVGSPGPP 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 155 AAAKGRKAKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAG----SPARCSRISHTDSSSDLSDcPSEPLSDEQRLLPAA 230
Cdd:PHA03307 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSppaePPPSTPPAAASPRPPRRSS-PISASASSPAPAPGR 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 231 SSDAESGTGSSDREPPRGAPTPSpAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPgvaedvRGRSPPer 310
Cdd:PHA03307 227 SAADDAGASSSDSSSSESSGCGW-GPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSP------RERSPS-- 297
|
250
....*....|....*.
gi 2217316427 311 PVPGTPKEPSLGEQSR 326
Cdd:PHA03307 298 PSPSSPGSGPAPSSPR 313
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
350-500 |
2.42e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSYLEEDVyQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVA- 428
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEE-QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAe 434
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217316427 429 -KDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNQN 500
Cdd:TIGR02168 435 lKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
144-264 |
2.62e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.86 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 144 AGKPPGAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAARIPAVTL-AVTSVAGSPArcSRISHTDSSSDLSDCPSEPLSD 222
Cdd:PRK14951 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPaAAASAPAAPP--AAAPPAPVAAPAAAAPAAAPAA 440
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2217316427 223 EQRLLPAASSDAESGTGSSDREPPRGAPTPSPA-ARGAPPGSP 264
Cdd:PRK14951 441 APAAVALAPAPPAQAAPETVAIPVRVAPEPAVAsAAPAPAAAP 483
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
12-265 |
2.75e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.13 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 12 APDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPflkdlhARPAAPGPAVPSSGRapapaAPRSPNLAGKAPPSPGSL 91
Cdd:PRK07764 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAP------AAPAPAGAAAAPAEA-----SAAPAPGVAAPEHHPKHV 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 92 AAPGRLSRRSGGVPGAKDKPPPgagaraaggakaalgsrrAARVAPAEPLSRAGKPPGAEPPSAAAKGRKAKRGSRAPPA 171
Cdd:PRK07764 658 AVPDASDGGDGWPAKAGGAAPA------------------APPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAA 719
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 172 RTVGPPTPAARIPAVTLAVTSVAGSParcsrishtdsssDLSDCPSEPLSDEQrllPAASSDAESGTGSSDREPPRGAPT 251
Cdd:PRK07764 720 QPPQAAQGASAPSPAADDPVPLPPEP-------------DDPPDPAGAPAQPP---PPPAPAPAAAPAAAPPPSPPSEEE 783
|
250
....*....|....
gi 2217316427 252 PSPAARGAPPGSPE 265
Cdd:PRK07764 784 EMAEDDAPSMDDED 797
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
131-264 |
2.96e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.13 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 131 RAARVAPAEPLSRAGKPPGAEPPSAAAkgrkAKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSSS 210
Cdd:PRK07764 377 RLERLERRLGVAGGAGAPAAAAPSAAA----AAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2217316427 211 DLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSP 264
Cdd:PRK07764 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
102-323 |
4.64e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.36 E-value: 4.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 102 GGVPGAKDKPPPGAGARAAGGAKAalgSRRAARVAPAEPlSRAGKPPGAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAA 181
Cdd:PRK07764 589 GPAPGAAGGEGPPAPASSGPPEEA---ARPAAPAAPAAP-AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 182 RIPAVTLAVTSVAGSParcsrishtdsssdlsdcPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPAARGAPP 261
Cdd:PRK07764 665 GGDGWPAKAGGAAPAA------------------PPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQ 726
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217316427 262 GSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGE 323
Cdd:PRK07764 727 GASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAED 788
|
|
| PBP1 |
COG5180 |
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
13-319 |
5.24e-04 |
|
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];
Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 45.05 E-value: 5.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 13 PDAKLQPPGQHHRHHHLHPVAERrrLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLA 92
Cdd:COG5180 158 SDPILAKDPDGDSASTLPPPAEK--LDKVLTEPRDALKDSPEKLDRPKVEVKDEAQEEPPDLTGGADHPRPEAASSPKVD 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 93 APGRLSRRSGgvPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAA-AKGRKAKRGSRAPPA 171
Cdd:COG5180 236 PPSTSEARSR--PATVDAQPEMRPPADAKERRRAAIGDTPAAEPPGLPVLEAGSEPQSDAPEAEtARPIDVKGVASAPPA 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 172 RTVGPPTPAAR---IPAVTLAVTSVAGSPARCSRISHTDSSSDlsdcPSEPLSDEQRLLPAASSDAESGTGSSDREPPRG 248
Cdd:COG5180 314 TRPVRPPGGARdpgTPRPGQPTERPAGVPEAASDAGQPPSAYP----PAEEAVPGKPLEQGAPRPGSSGGDGAPFQPPNG 389
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217316427 249 APTPSPaARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAedvrgRSPPERPVPGTPKEP 319
Cdd:COG5180 390 APQPGL-GRRGAPGPPMGAGDLVQAALDGGGRETASLGGAAGGAGQGPKAD-----FVPGDAESVSGPAGL 454
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
338-693 |
5.29e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 5.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 338 REMEELRSENDYLKDELDELRAEMEEMRDSYLEEDVYQLQELRRELDRankncRILQYRLRKAEQKSLKvaetgqVDGEL 417
Cdd:pfam02463 177 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE-----YLLYLDYLKLNEERID------LLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 418 IRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDEnetlrQQMIEVEISKQALQNELERLKESSLKRRSTREmyKEKKTF 497
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE-----KKLQEEELKLLAKEEEELKSELLKLERRKVDD--EEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 498 NQNggmerpgncrPATKTQRKLAPRRKDdsadlrcQLQFAKEEAFLMRKKmAKLGREKDELEQELQKYKSLYGDVDSPLP 577
Cdd:pfam02463 319 SEK----------EKKKAEKELKKEKEE-------IEELEKELKELEIKR-EAEEEEEEELEKLQEKLEQLEEELLAKKK 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 578 TGEAGGPPSTREAELKLRLKLVEEeaNILGRKIVELEVENRGLKAEMEDMRGQQEREGpgrdhapsiptsPFGDSLESST 657
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEE--KEAQLLLELARQLEDLLKEEKKEELEILEEEE------------ESIELKQGKL 446
|
330 340 350
....*....|....*....|....*....|....*.
gi 2217316427 658 ELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSK 693
Cdd:pfam02463 447 TEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
149-331 |
6.73e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.87 E-value: 6.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 149 GAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRishtdsssdlsdcpsePLSDEQRLLP 228
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA----------------RRSPAPEALA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 229 AASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPE------PPALLAAPLAAGAcPGGRSIP--SGVSGGFAGPGVAE 300
Cdd:PRK12323 435 AARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPvaaaaaAAPARAAPAAAPA-PADDDPPpwEELPPEFASPAPAQ 513
|
170 180 190
....*....|....*....|....*....|....
gi 2217316427 301 DVRGRSPPER---PVPGTPKEPSLGEQSRLVPAA 331
Cdd:PRK12323 514 PDAAPAGWVAesiPDPATADPDDAFETLAPAPAA 547
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
349-569 |
7.25e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 349 YLKDELDELRAEMEEMRDsYLEEdvyQLQELRRELDRANKncRILQYRlrkAEQKSLKVAETGQVDGELIRSLEQDLKVA 428
Cdd:COG3206 161 YLEQNLELRREEARKALE-FLEE---QLPELRKELEEAEA--ALEEFR---QKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 429 KDVSVRLHHELKTVEEKRAKAEDEN---------ETLRQQMIEVEiskQALQNELERLKESSLKRRSTREMYKEKKTFNQ 499
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGPDALpellqspviQQLRAQLAELE---AELAELSARYTPNHPDVIALRAQIAALRAQLQ 308
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 500 nggmERPGNCRPATKTQRKLAPRRKddsADLRCQLQFAKEEAflmrKKMAKLGREKDELEQELQKYKSLY 569
Cdd:COG3206 309 ----QEAQRILASLEAELEALQARE---ASLQAQLAQLEARL----AELPELEAELRRLEREVEVARELY 367
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
130-313 |
7.36e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.78 E-value: 7.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 130 RRAARVAPAEPLSRA-GKPPGAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDS 208
Cdd:PHA03307 742 RRARARASAWDITDAlFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS 821
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 209 SSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSG 288
Cdd:PHA03307 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAP 901
|
170 180
....*....|....*....|....*
gi 2217316427 289 VSggfAGPGVAEDVRGRSPPERPVP 313
Cdd:PHA03307 902 AP---RPRPAPRVKLGPMPPGGPDP 923
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
346-496 |
7.77e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 7.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 346 ENDYLKDELDELRAE--MEEMRDSYLEEDVYQLQELRRELDRANKN--CRILQYRLRKAEQKSLKVAETgQVDGELIRSL 421
Cdd:pfam17380 390 KNERVRQELEAARKVkiLEEERQRKIQQQKVEMEQIRAEQEEARQRevRRLEEERAREMERVRLEEQER-QQQVERLRQQ 468
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217316427 422 EQDLKVAKDVSVRLHHELKTVEEKRAKA-EDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKT 496
Cdd:pfam17380 469 EEERKRKKLELEKEKRDRKRAEEQRRKIlEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRK 544
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
350-634 |
9.00e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 9.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSYLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQK------SLKVAETGQVDGELIRSLEQ 423
Cdd:COG4717 168 LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEleeleeELEQLENELEAAALEERLKE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 424 DLKVAKDVSVRL------------------------------------HHELKTVEEKRAKAEDENETLRQQMIEVEISK 467
Cdd:COG4717 248 ARLLLLIAAALLallglggsllsliltiagvlflvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAA 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 468 QALQNELERLKESSLKRR--STREMYKEKKTFNQnggmerpgncrpatktQRKLAPRRKDDSADLRcQLQFAKEEAFLMR 545
Cdd:COG4717 328 LGLPPDLSPEELLELLDRieELQELLREAEELEE----------------ELQLEELEQEIAALLA-EAGVEDEEELRAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 546 kkmAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPST---REAELKLRLKLVEEEANILGRKIVELEVENRGLKA 622
Cdd:COG4717 391 ---LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEleeELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
330
....*....|..
gi 2217316427 623 EMEDMRGQQERE 634
Cdd:COG4717 468 DGELAELLQELE 479
|
|
| DUF4201 |
pfam13870 |
Domain of unknown function (DUF4201); This is a family of coiled-coil proteins from eukaryotes. ... |
376-479 |
9.72e-04 |
|
Domain of unknown function (DUF4201); This is a family of coiled-coil proteins from eukaryotes. The function is not known.
Pssm-ID: 464008 [Multi-domain] Cd Length: 177 Bit Score: 42.21 E-value: 9.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 376 LQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQ----VD-----------GELIRSLEQDLKVAKDVSVRLHHELK 440
Cdd:pfam13870 1 MRAKRNELSKLRLELITLKHTLAKIQEKLEQKEELGEgltmIDflqlqienqalNEKIEERNKELKRLKLKVTNTVHALT 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 2217316427 441 TVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKE 479
Cdd:pfam13870 81 HLKEKLHFLSAELSRLKKELRERQELLAKLRKELYRVKL 119
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
345-568 |
1.20e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.98 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 345 SENDYLKDELDELRAEMEEMRDSYLE---------EDVYQLQELRRELDRANKNCRILQYRLRKAEQKSlkvaETGQVDG 415
Cdd:COG1340 57 EEAQELREKRDELNEKVKELKEERDElneklnelrEELDELRKELAELNKAGGSIDKLRKEIERLEWRQ----QTEVLSP 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 416 EL-------IRSLEQDLKVAKDvSVRLHHELKTVEEKRAKAEDENETLRQQMieveiskQALQNELERLKESSLKRRSTR 488
Cdd:COG1340 133 EEekelvekIKELEKELEKAKK-ALEKNEKLKELRAELKELRKEAEEIHKKI-------KELAEEAQELHEEMIELYKEA 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 489 -EMYKE----KKTFNqnggmerpgNCRPATKTQRKLAPRRKDDSADLRCQL--QFAKEEAFLMRKKMAKLGREKDELEQE 561
Cdd:COG1340 205 dELRKEadelHKEIV---------EAQEKADELHEEIIELQKELRELRKELkkLRKKQRALKREKEKEELEEKAEEIFEK 275
|
....*..
gi 2217316427 562 LQKYKSL 568
Cdd:COG1340 276 LKKGEKL 282
|
|
| Rootletin |
pfam15035 |
Ciliary rootlet component, centrosome cohesion; |
391-493 |
1.44e-03 |
|
Ciliary rootlet component, centrosome cohesion;
Pssm-ID: 464459 [Multi-domain] Cd Length: 190 Bit Score: 41.95 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 391 RILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDL-----KVAKDVSVRLHHELKTVEEKRAKAED---ENETLRQQMIE 462
Cdd:pfam15035 24 KVLQYKKRCSELEQQLLEKTSELEKTELLLRKLTLeprlqRLEREHSADLEEALIRLEEERQRSESlsqVNSLLREQLEQ 103
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2217316427 463 VEISKQALQNELERL-------------KESSLKRRstREMYKE 493
Cdd:pfam15035 104 ASRANEALREDLQKLtndwerareeleqKESEWRKE--EEAFNE 145
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
110-262 |
1.62e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.55 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 110 KPPPGAGaraaggakaalgsrrAARVAPAEPLSRAGKP-PGAEPPSAAAKGRKAKrgsRAPPARTVGPPTPAARI-PAVT 187
Cdd:PRK14951 365 KPAAAAE---------------AAAPAEKKTPARPEAAaPAAAPVAQAAAAPAPA---AAPAAAASAPAAPPAAApPAPV 426
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217316427 188 LAVTSVAGSPARcsriSHTDSSSDLSDCPSEPLSDEQRLLPAAssdAESGTGSSDREPPRGAPTPSPAARGAPPG 262
Cdd:PRK14951 427 AAPAAAAPAAAP----AAAPAAVALAPAPPAQAAPETVAIPVR---VAPEPAVASAAPAPAAAPAAARLTPTEEG 494
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
350-487 |
2.08e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSYLEEDVyQLQELRRELDRANKncrilqyRLRKAEQKSLKVAETgqvDGELIRSLEQDLKvak 429
Cdd:COG3206 268 LRAQLAELEAELAELSARYTPNHP-DVIALRAQIAALRA-------QLQQEAQRILASLEA---ELEALQAREASLQ--- 333
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217316427 430 dvsvrlhhelKTVEEKRAKAEDENETLRQQMI---EVEISKQALQNELERLKESSLKRRST 487
Cdd:COG3206 334 ----------AQLAQLEARLAELPELEAELRRlerEVEVARELYESLLQRLEEARLAEALT 384
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
348-739 |
2.22e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 348 DYLKDELDELRAEMEEMrdSYLEEDVY----QLQELRRELDRANKNCRILqyrLRKAEQKSlkvAETGQVDGELI--RSL 421
Cdd:PRK01156 169 DKLKDVIDMLRAEISNI--DYLEEKLKssnlELENIKKQIADDEKSHSIT---LKEIERLS---IEYNNAMDDYNnlKSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 422 EQDLKVAKDVSVRLHHELKTVEEKRAKAEDENetlrqqmieVEISkqALQNELERLKESSL--KRRSTREMYKEKKTFNQ 499
Cdd:PRK01156 241 LNELSSLEDMKNRYESEIKTAESDLSMELEKN---------NYYK--ELEERHMKIINDPVykNRNYINDYFKYKNDIEN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 500 NGGMER--PGNCRPATKTQRKLAPRRKDDSadlrcqlQFAKeeaflMRKKMAKLGREKDELEQELQKYKSLYGDVDS--- 574
Cdd:PRK01156 310 KKQILSniDAEINKYHAIIKKLSVLQKDYN-------DYIK-----KKSRYDDLNNQILELEGYEMDYNSYLKSIESlkk 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 575 ------------PLPTGEAGGPPSTREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGpGRDHAP 642
Cdd:PRK01156 378 kieeyskniermSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQSVCP 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 643 SIPTSpFGDslESSTELRRH----LQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPPREpgwlgegASPGAGGGAP 718
Cdd:PRK01156 457 VCGTT-LGE--EKSNHIINHynekKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINK-------SINEYNKIES 526
|
410 420
....*....|....*....|.
gi 2217316427 719 LQEELKSARLQISELSGKVLK 739
Cdd:PRK01156 527 ARADLEDIKIKINELKDKHDK 547
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
345-682 |
2.27e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 345 SENDYLKDELDEL-RAEME-EMRDSYLEEdvyQLQELRRELDRANKNCRILQYRLRKAEqkslkvAETGQVDGELIRSLE 422
Cdd:pfam01576 384 SENAELQAELRTLqQAKQDsEHKRKKLEG---QLQELQARLSESERQRAELAEKLSKLQ------SELESVSSLLNEAEG 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 423 QDLKVAKDVSvRLHHELKTV-----EEKRAK---------AEDENETLRQQMIEVEISKQALQNELERLKE--SSLKRR- 485
Cdd:pfam01576 455 KNIKLSKDVS-SLESQLQDTqellqEETRQKlnlstrlrqLEDERNSLQEQLEEEEEAKRNVERQLSTLQAqlSDMKKKl 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 486 ------------STREMYKEKKTFNQNGGmERPGNCRPATKTQRKLAPRRKDDSADLRCQLQFA-----KEEAF---LMR 545
Cdd:pfam01576 534 eedagtlealeeGKKRLQRELEALTQQLE-EKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVsnlekKQKKFdqmLAE 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 546 KKM--AKLGREKDELEQElqkykslygdvdsplptgeaggppsTREAELK-LRLKLVEEEANilgRKIVELEVENRGLKA 622
Cdd:pfam01576 613 EKAisARYAEERDRAEAE-------------------------AREKETRaLSLARALEEAL---EAKEELERTNKQLRA 664
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 623 EMEDMRGQQEREGpgrdhapsiptspfgdslESSTELRRHLQFVEEEAELLRRSISEIED 682
Cdd:pfam01576 665 EMEDLVSSKDDVG------------------KNVHELERSKRALEQQVEEMKTQLEELED 706
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1155-1303 |
2.38e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 1155 KQVVENQQ-LFSAFKALLEDFRAELREDERARLRLQ---QQYASDKAAWDVEWAVLKCRLEQLEEKTENKLGELGSSAES 1230
Cdd:TIGR02168 788 EAQIEQLKeELKALREALDELRAELTLLNEEAANLRerlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217316427 1231 KGALKKEREVHQKLLADSHSLVMDLRwqihhseknwnrekvELLDRLDRDRQEWERQKKEFLWRIEQLQKENS 1303
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLR---------------SELEELSEELRELESKRSELRRELEELREKLA 925
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
12-185 |
2.55e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.94 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 12 APDAKLQPPGQHHRHHHLHPV--AERRRLHRAPSPARPFLKDL----HARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAP 85
Cdd:PRK12323 391 APAAAAPAPAAPPAAPAAAPAaaAAARAVAAAPARRSPAPEALaaarQASARGPGGAPAPAPAPAAAPAAAARPAAAGPR 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 86 PSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRagkPPGAEPPSAAAKGRKAKRG 165
Cdd:PRK12323 471 PVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD---PATADPDDAFETLAPAPAA 547
|
170 180
....*....|....*....|
gi 2217316427 166 SRAPPARTVGPPTPAARIPA 185
Cdd:PRK12323 548 APAPRAAAATEPVVAPRPPR 567
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
31-156 |
2.69e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.78 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 31 PVAERRRLHRaPSPARPFLKDLHARPAAPGPAVPSSGrapapaaprspnlAGKAPPSPGSLAAPGRLSRRSGGVPGAKDK 110
Cdd:PRK14951 374 APAEKKTPAR-PEAAAPAAAPVAQAAAAPAPAAAPAA-------------AASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2217316427 111 PPPGAGARAAGGAKAALGSRRA--ARVAPAEPLSRAGKPPGAEPPSAA 156
Cdd:PRK14951 440 AAPAAVALAPAPPAQAAPETVAipVRVAPEPAVASAAPAPAAAPAAAR 487
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
374-576 |
2.74e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 374 YQLQELRRELDRANKNCRILQYRLRKAEQKslkvaetgqvdgelIRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDEN 453
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDE--------------LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 454 ETLRQQMIEVEISK--QALQNELERLKesslKRRSTREmyKEKKTFnqnggMERpgncrpATKTQRKLApRRKDDSADLR 531
Cdd:COG1579 76 KKYEEQLGNVRNNKeyEALQKEIESLK----RRISDLE--DEILEL-----MER------IEELEEELA-ELEAELAELE 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2217316427 532 CQLQFAKEEAflmRKKMAKLGREKDELEQELQKYKSlygDVDSPL 576
Cdd:COG1579 138 AELEEKKAEL---DEELAELEAELEELEAEREELAA---KIPPEL 176
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
525-753 |
3.61e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 525 DDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYkslygdvdsplptgeaggppSTREAELKLRLKLVEEEAN 604
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL--------------------ERRIAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 605 ILGRKIVELEVENRGLKAEMEDMRGQQER-----EGPGRDHAPSIPTSP--FGDSLESSTELRRHLQFVEEEAELLRRSI 677
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAEllralYRLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217316427 678 SEIEDHNRQLTHELSKfkfepprepgwLGEGASPGAGGGAPLQEELKSARLQISELSGKVLKLQHENHALLSNIQR 753
Cdd:COG4942 160 AELAALRAELEAERAE-----------LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
350-634 |
4.09e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.43 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSyLEEDVYQLQELRRELDraNKNCRILQYRLRKAEQKSLKvaetgqvdGELIRSLeQDLKVAK 429
Cdd:COG1340 13 LEEKIEELREEIEELKEK-RDELNEELKELAEKRD--ELNAQVKELREEAQELREKR--------DELNEKV-KELKEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 430 DvsvrlhhELKT-VEEKRAKAEDENEtLRQQMIEVEISKQALQNELERLKESSLKRRSTREmyKEKKTFNQnggmerpgn 508
Cdd:COG1340 81 D-------ELNEkLNELREELDELRK-ELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPE--EEKELVEK--------- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 509 crpATKTQRKLapRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYK----SLYGDVDSplptgeaggp 584
Cdd:COG1340 142 ---IKELEKEL--EKAKKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHeemiELYKEADE---------- 206
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217316427 585 pSTREA--------ELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQERE 634
Cdd:COG1340 207 -LRKEAdelhkeivEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEKE 263
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
347-625 |
4.27e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 347 NDYLKDELDELRAEMEEMRDSY--LEEDVYQ----LQELRRELDRAN---KNCRILQYRLrKAEQKSLKVAETGQVD--- 414
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQaaAEEQLVQangeLEKASREETFARtalKNARLDLRRL-FDEKQSEKDKKNKALAerk 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 415 ---GELIRSLEQDLKVakdvsvrLHHELKTVEEKRAKAEDENETLRQQMIEVEISkqALQNELERLKESSLKRRSTREMY 491
Cdd:pfam12128 678 dsaNERLNSLEAQLKQ-------LDKKHQAWLEEQKEQKREARTEKQAYWQVVEG--ALDAQLALLKAAIAARRSGAKAE 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 492 -KEKKTFNQNG----GMERPGNCRPATKTQ---RKLAPRRKDDSADLRCQlQFAKEEAFLMRKKMA----KLGREKDELE 559
Cdd:pfam12128 749 lKALETWYKRDlaslGVDPDVIAKLKREIRtleRKIERIAVRRQEVLRYF-DWYQETWLQRRPRLAtqlsNIERAISELQ 827
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217316427 560 QELQKykslygdvdsplptgeaggppstREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEME 625
Cdd:pfam12128 828 QQLAR-----------------------LIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMS 870
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
7-311 |
4.91e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.23 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 7 PAGGGAPD------AKLQPPGQHHRHHHLHPVAERRRLHRAPsparpflkdLHARPAAPGPAVPSSGRAPAPAAPRSPNL 80
Cdd:PHA03247 206 PSGPGPAApadltaAALHLYGASETYLQDEPFVERRVVISHP---------LRGDIAAPAPPPVVGEGADRAPETARGAT 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 81 AGKAPPSPGSLAAPGRLSRRS-----GGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKP-------- 147
Cdd:PHA03247 277 GPPPPPEAAAPNGAAAPPDGVwgaalAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPlgfpkrrr 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 148 PGAEPPSAA---AKGRKAKRgsRAPPARTVGPPTPAARIPavtlavtsVAGSPArcsrishtdssSDLSDCPSEPlsdeq 224
Cdd:PHA03247 357 PTWTPPSSLedlSAGRHHPK--RASLPTRKRRSARHAATP--------FARGPG-----------GDDQTRPAAP----- 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 225 rlLPAASSDAESGTGSSDREPPRGAPTPSP-AARGAPPGSPeppallaaplAAGACPGGRSIPSGVSGGFAGPGVAEDVR 303
Cdd:PHA03247 411 --VPASVPTPAPTPVPASAPPPPATPLPSAePGSDDGPAPP----------PERQPPAPATEPAPDDPDDATRKALDALR 478
|
....*...
gi 2217316427 304 GRSPPERP 311
Cdd:PHA03247 479 ERRPPEPP 486
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
36-184 |
5.38e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.98 E-value: 5.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 36 RRLHRAPSPARPflkdlhaRPAAPGPAVPSSGRAPAPAAPrspnlAGKAPPSPGSLAAPGRLsRRSGGVPGAKdkPPPGA 115
Cdd:PHA03378 685 LPIQWAPGTMQP-------PPRAPTPMRPPAAPPGRAQRP-----AAATGRARPPAAAPGRA-RPPAAAPGRA--RPPAA 749
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217316427 116 GARAAGGAKAALGSRRAARVAPaeplsraGKPPGAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAARIP 184
Cdd:PHA03378 750 APGRARPPAAAPGRARPPAAAP-------GAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMP 811
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
416-695 |
5.43e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 416 ELIRSLEQDLKVAKDVSVRLhhelKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKE-----SSLKRRsTREM 490
Cdd:PRK03918 176 RRIERLEKFIKRTENIEELI----KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeeiEELEKE-LESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 491 YKEKKTFNqnggmERPGNCRPATKTQRKLAPRRKDDSADLRcQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYG 570
Cdd:PRK03918 251 EGSKRKLE-----EKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 571 DVDSPLPTGEAggpPSTREAELKLRLKLVEEEANILGRKIVELEVenrgLKAEMEDMRGQQEREGPgrdhapsiptspfg 650
Cdd:PRK03918 325 GIEERIKELEE---KEERLEELKKKLKELEKRLEELEERHELYEE----AKAKKEELERLKKRLTG-------------- 383
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2217316427 651 dslESSTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFK 695
Cdd:PRK03918 384 ---LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK 425
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
346-741 |
6.49e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 346 ENDYLKDELDELRAEMEEmrdsyLEEDVYQLQELRRELDRANKNCRIL--QYRLRKAEQKSLKVAETGQV---------- 413
Cdd:TIGR00618 254 EQLKKQQLLKQLRARIEE-----LRAQEAVLEETQERINRARKAAPLAahIKAVTQIEQQAQRIHTELQSkmrsrakllm 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 414 ----------DGELIRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQ------NELERL 477
Cdd:TIGR00618 329 kraahvkqqsSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQslckelDILQRE 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 478 KESSLKRRSTREMYKEKKTfnqnggmerpgncrpATKTQRKLAPRRKDD-SADLRCQLQFAKEEAFLMRKKMAKLgREKD 556
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLA---------------HAKKQQELQQRYAELcAAAITCTAQCEKLEKIHLQESAQSL-KERE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 557 ELEQELQKYKSLY---GDVDSPLPTGEAGGPPSTREAELKLRLKLVE-EEANILGRKIVELEVENRGLKAEMEDMRGQ-- 630
Cdd:TIGR00618 473 QQLQTKEQIHLQEtrkKAVVLARLLELQEEPCPLCGSCIHPNPARQDiDNPGPLTRRMQRGEQTYAQLETSEEDVYHQlt 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 631 QEREGPGR--------DHAPSIPTSPFGDSLESSTELRRHLQFV----EEEAELLRRSISEIEDHNRQLTHELSkfKFEP 698
Cdd:TIGR00618 553 SERKQRASlkeqmqeiQQSFSILTQCDNRSKEDIPNLQNITVRLqdltEKLSEAEDMLACEQHALLRKLQPEQD--LQDV 630
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 2217316427 699 PREPGWLGEGASPGAGGGAPLQEELKSARLQISELSGKVLKLQ 741
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKE 673
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
56-329 |
8.54e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.10 E-value: 8.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 56 PAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLSRRS---------GGVP---GAKDKPPPGAGARAAGGA 123
Cdd:pfam17823 115 LAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAaiaaasaphAASPaprTAASSTTAASSTTAASSA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 124 KAALGSRRAARVAPAEPLSRAGKPPGAepPSAAAKgrKAKRGSRAPPART----VGPPTPA--ARIPAVTLAVTSVAGSP 197
Cdd:pfam17823 195 PTTAASSAPATLTPARGISTAATATGH--PAAGTA--LAAVGNSSPAAGTvtaaVGTVTPAalATLAAAAGTVASAAGTI 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 198 ARCSRISHTDSSSdlSDCPSEPLSDEqrllPAASSDAES-GTGS--SDREP---PRGAPTPSPAARGAPPGSPEPPALLA 271
Cdd:pfam17823 271 NMGDPHARRLSPA--KHMPSDTMARN----PAAPMGAQAqGPIIqvSTDQPvhnTAGEPTPSPSNTTLEPNTPKSVASTN 344
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217316427 272 APLAAGACPGGRSiPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSRLVP 329
Cdd:pfam17823 345 LAVVTTTKAQAKE-PSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPGILLAP 401
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
350-495 |
8.58e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 8.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 350 LKDELDELRAEMEEMRDSYLEEDVyQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQdLKVAK 429
Cdd:COG3883 35 AQAELDALQAELEELNEEYNELQA-ELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDV-LLGSE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 430 DVS-------------------VRLHHELK-TVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTRE 489
Cdd:COG3883 113 SFSdfldrlsalskiadadadlLEELKADKaELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEA 192
|
....*.
gi 2217316427 490 MYKEKK 495
Cdd:COG3883 193 AAEAQL 198
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
351-563 |
9.16e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 9.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 351 KDELDELRAEMEEMRDSY------LEEDVYQLQELRRELDRANKNCRILQYRLRKAEqKSLKVAETGQVDGElIRSLEQD 424
Cdd:PRK02224 383 REEIEELEEEIEELRERFgdapvdLGNAEDFLEELREERDELREREAELEATLRTAR-ERVEEAEALLEAGK-CPECGQP 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217316427 425 LKVAKDVSVrlhheLKTVEEKRAKAEDENETLRQQMIEVE------ISKQALQNELERLKEsslKRRSTREMYKEKKTfn 498
Cdd:PRK02224 461 VEGSPHVET-----IEEDRERVEELEAELEDLEEEVEEVEerleraEDLVEAEDRIERLEE---RREDLEELIAERRE-- 530
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217316427 499 qngGMERPgncRPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQ 563
Cdd:PRK02224 531 ---TIEEK---RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
|
|
| |
