|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
725-981 |
1.55e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 93.26 E-value: 1.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 725 LLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKK 803
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAeALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 804 VNKAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVYKSHKK-EAVIETLNKALDLQSRilkrvpleqpemipsqkqlAA 882
Cdd:COG2956 92 LDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDwEKAIEVLERLLKLGPE-------------------NA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 883 SICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFR 962
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
|
250
....*....|....*....
gi 2217342414 963 KQKHEAAINLYHQVLEKAP 981
Cdd:COG2956 225 LGDPEEALELLRKALELDP 243
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
314-1056 |
4.36e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 97.08 E-value: 4.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 314 FIERTFMATPSYVHVATELGYLFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEFLkeVQKSL 393
Cdd:TIGR02917 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL--LKKAP 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 394 GKSEVLiFLQALLMSRKHKGEEETTALlKEAVELHFSSMQGIPLG--SEY----FEKLDPYFlvciaKEYLLFCPKQP-- 465
Cdd:TIGR02917 259 NSPLAH-YLKALVDFQKKNYEDARETL-QDALKSAPEYLPALLLAgaSEYqlgnLEQAYQYL-----NQILKYAPNSHqa 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 466 -RLPG--QIVSPLLKQVAVILNPVVKAAPalIDPLYL-MAQVRYY-SGELENAQSILQRCLELDPASVDAHLLMCQIYLA 540
Cdd:TIGR02917 332 rRLLAsiQLRLGRVDEAIATLSPALGLDP--DDPAALsLLGEAYLaLGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 541 QGNFGMCFHCLELGVSHNFQVRDhplYHLIKARALNKAGDYPEAIKTLKmviklpALKKEEGRKflrPSVQpSQRASILL 620
Cdd:TIGR02917 410 QGDPSEAIADLETAAQLDPELGR---ADLLLILSYLRSGQFDKALAAAK------KLEKKQPDN---ASLH-NLLGAIYL 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 621 ELVEALRLNGELHEATKVMQDTINEfggtpeenRITIANVDLvlSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQT 700
Cdd:TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPA--------AANLARIDI--QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 701 LRDRRlYIRCYRELCEHLPGPHT-SLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYE 779
Cdd:TIGR02917 547 GNEEE-AVAWLEKAAELNPQEIEpALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 780 AAQKINGQDFLC-CDLGKLLLKLKKVNKAEKVLKQALEHDivqdipsmMNDVKCLLLLAKvykshkkeavIETLNKALDL 858
Cdd:TIGR02917 626 KLLALQPDSALAlLLLADAYAVMKNYAKAITSLKRALELK--------PDNTEAQIGLAQ----------LLLAAKRTES 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 859 QSRILKRvpleqpemIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLeLAQLYLLQGHLDLCEQH 938
Cdd:TIGR02917 688 AKKIAKS--------LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKT 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 939 CAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrflslilDNFLVLHKLIDLLRRSgkleDIPAFFEL 1018
Cdd:TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP---------DNAVVLNNLAWLYLEL----KDPRALEY 825
|
730 740 750
....*....|....*....|....*....|....*...
gi 2217342414 1019 AKKVSSRVPLEPGFNYCRGIYCWHIGQPNEALKFLNKA 1056
Cdd:TIGR02917 826 AERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
664-979 |
3.37e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 86.32 E-value: 3.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 664 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALE 742
Cdd:COG2956 19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRR-RGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 743 VYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEHDivq 821
Cdd:COG2956 98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKALKLD--- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 822 diPsmmNDVKCLLLLAKVYkshkkeavietlnkaldlqsrilkrvpleqpemipsqkqlaasiciqfaehyLAEKEYDKA 901
Cdd:COG2956 175 --P---DCARALLLLAELY----------------------------------------------------LEQGDYEEA 197
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217342414 902 VQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLmADLMFRKQKHEAAINLYHQVLEK 979
Cdd:COG2956 198 IAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRR 274
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
498-818 |
8.79e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 85.17 E-value: 8.79e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 498 YLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNK 577
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 578 AGDYPEAIKTLKMVIKLPAlkkeegrkflrpsvqpsqrasillELVEALRLNGELHEATKvmqdtinefggtpeenriti 657
Cdd:COG2956 89 AGLLDRAEELLEKLLELDP------------------------DDAEALRLLAEIYEQEG-------------------- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 658 anvdlvlskgNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILE 736
Cdd:COG2956 125 ----------DWEKAIEVLERLLKLGPENAHAYCELAELYLE-QGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGD 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 737 PEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVLKQALE 816
Cdd:COG2956 194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
|
..
gi 2217342414 817 HD 818
Cdd:COG2956 274 RH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
5-775 |
5.70e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 86.68 E-value: 5.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 5 DSSLMAGIIYYSQEKYfhhvQQAAAV---GLEKFSNDPVLKFFKAYGVLKEEHIQDAISDLESIR----HHPDVSLcsTM 77
Cdd:TIGR02917 194 DALLLKGDLLLSLGNI----ELALAAyrkAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLkkapNSPLAHY--LK 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 78 ALI-YAHKRCEiidrEAIQELEYSLKEIRKTVsgTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLT 156
Cdd:TIGR02917 268 ALVdFQKKNYE----DARETLQDALKSAPEYL--PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 157 SDKPHTAKKAIEYLEQGIQDTKDVLGLMGKAmyFMMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEM 236
Cdd:TIGR02917 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEA--YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIAD 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 237 GHRILEKDESNIDACQILTVHELaREGNMttatNHVRNLIKALETREPENPSLHLKkiivvsrlcgshqvilglvcsfie 316
Cdd:TIGR02917 420 LETAAQLDPELGRADLLLILSYL-RSGQF----DKALAAAKKLEKKQPDNASLHNL------------------------ 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 317 rtfmatpsyvhvateLGYLFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEflKEVQKSLGKS 396
Cdd:TIGR02917 471 ---------------LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE--KVLTIDPKNL 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 397 EVLIFLQALLMSRKHkgEEETTALLKEAVELHFSSMQG-IPLGSEYFEKLDPYFLVCIAKEYLLFCPKQPRL-----PGQ 470
Cdd:TIGR02917 534 RAILALAGLYLRTGN--EEEAVAWLEKAAELNPQEIEPaLALAQYYLGKGQLKKALAILNEAADAAPDSPEAwlmlgRAQ 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 471 IVSPLLKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHc 550
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK- 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 551 lelgVSHNFQVR--DHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPSqrASILLELVEALRL 628
Cdd:TIGR02917 691 ----IAKSLQKQhpKAALGFELEGDLYLRQKDYPAAIQAYRKALKR----------------APS--SQNAIKLHRALLA 748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 629 NGELHEATKVMQDTINEfggTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQTLRDRRLYi 708
Cdd:TIGR02917 749 SGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALE- 824
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217342414 709 rcYRELCEHL-PGPHTSL-LLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAI 775
Cdd:TIGR02917 825 --YAERALKLaPNIPAILdTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
482-751 |
1.92e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.93 E-value: 1.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 482 ILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqv 561
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 562 RDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvqPSQRASILLELVEALRLNGELHEATKVMQD 641
Cdd:COG2956 107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-----------------GPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 642 TINEfggTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGP 721
Cdd:COG2956 170 ALKL---DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPSD 245
|
250 260 270
....*....|....*....|....*....|
gi 2217342414 722 HTSLLLGDALMSILEPEKALEVYDEAYRQN 751
Cdd:COG2956 246 DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
114-428 |
1.15e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 75.92 E-value: 1.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 114 YYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVL-------RGWVDltsdkphtakKAIEYLEQGIQDTKD-VLGLMG 185
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLAlgnlyrrRGEYD----------RAIRIHQKLLERDPDrAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 186 KAMYFMMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDACqiltvHELAREgnm 265
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY-----CELAEL--- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 266 ttatnhvrnlikALETREPENPSLHLKKIIvvsrlcgshqvilglvcsfiertfMATPSYVHVATELGYLFILKNQVKEA 345
Cdd:COG2956 154 ------------YLEQGDYDEAIEALEKAL------------------------KLDPDCARALLLLAELYLEQGDYEEA 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 346 LLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAeyrLEFLKEVQKSLGKSEVLIFLQALLMsrKHKGEEETTALLKEAV 425
Cdd:COG2956 198 IAALERALEQDPDYLPALPRLAELYEKLGDPEEA---LELLRKALELDPSDDLLLALADLLE--RKEGLEAALALLERQL 272
|
...
gi 2217342414 426 ELH 428
Cdd:COG2956 273 RRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
507-1292 |
1.00e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.28 E-value: 1.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 507 SGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNFQVRDHplyHLIKARALNKAGDYPEAIK 586
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA---LLLKGDLLLSLGNIELALA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 587 TLKMVIKLpalkkeegrkflrpsvQPSQRASILLELVEALRLnGELHEATKVMQDTINEFGGTPEENRITiANVDLvlSK 666
Cdd:TIGR02917 215 AYRKAIAL----------------RPNNIAVLLALATILIEA-GEFEEAEKHADALLKKAPNSPLAHYLK-ALVDF--QK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 667 GNVDVALNMLRNILPKQSCYMEARE--KMANIYLQTLRDRRLYIRCYrelCEHLPGPHTSLLLgdaLMSIL----EPEKA 740
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLlaGASEYQLGNLEQAYQYLNQI---LKYAPNSHQARRL---LASIQlrlgRVDEA 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 741 LEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGqdflccdlgklllklkkvNKAEKVLKQALEHdiv 820
Cdd:TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP------------------ENAAARTQLGISK--- 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 821 qdipSMMNDVkcllllakvykshkkEAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAasiciqfaEHYLAEKEYDK 900
Cdd:TIGR02917 408 ----LSQGDP---------------SEAIADLETAAQLD-----------PELGRADLLLI--------LSYLRSGQFDK 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 901 AVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKA 980
Cdd:TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 981 PawrflslilDNFLVLHKLIDLLRRSGKledipaffelakkvssrvplepgfnycrgiycwhigqPNEALKFLNKARKds 1060
Cdd:TIGR02917 530 P---------KNLRAILALAGLYLRTGN-------------------------------------EEEAVAWLEKAAE-- 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1061 twgqsaiyhmvqicLNPDNEvvggeafenqgAESKSNTCSYMEKKELEQqgvstAEKLLREFyphSDSSQTQLRLLQGLC 1140
Cdd:TIGR02917 562 --------------LNPQEI-----------EPALALAQYYLGKGQLKK-----ALAILNEA---ADAAPDSPEAWLMLG 608
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1141 RLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQ 1220
Cdd:TIGR02917 609 RAQLAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR------ALELKPDNTEAQIGLAQLLLA 681
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217342414 1221 GSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIGFKLAFNYLKDKK 1292
Cdd:TIGR02917 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTA 753
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
889-1236 |
6.25e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.83 E-value: 6.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 889 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 968
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 969 AINLYHQVLEKAPawrflslilDNFLVLHKLIDLLRRSGKLEdipaffelakkvssrvplepgfnycrgiycwhigqpnE 1048
Cdd:COG2956 95 AEELLEKLLELDP---------DDAEALRLLAEIYEQEGDWE-------------------------------------K 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1049 ALKFLNKARKDStwGQSAIYHMVQiclnpdnevvgGEAfenqgaesksntcsYMEKKELEQqgvstAEKLLREFYPHSDS 1128
Cdd:COG2956 129 AIEVLERLLKLG--PENAHAYCEL-----------AEL--------------YLEQGDYDE-----AIEALEKALKLDPD 176
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1129 SqtqLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAktpwvlsEAEDLE 1208
Cdd:COG2956 177 C---ARALLLLAELYLEQG-DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSD 245
|
330 340
....*....|....*....|....*...
gi 2217342414 1209 KSWLLLADIYCQGSKFDLALELLRRCVQ 1236
Cdd:COG2956 246 DLLLALADLLERKEGLEAALALLERQLR 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
572-1306 |
1.34e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 69.34 E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 572 ARALNKAGDYPEAIKTLKMVIKLPALKKEegrkflrpsvqpsqrasILLELVEALRLNGELheatkvmQDTINEFGGT-- 649
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKALSLGYPKNQ-----------------VLPLLARAYLLQGKF-------QQVLDELPGKtl 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 650 -PEENRITIANV--DLVLSKGNVDVALNMLRNILPKQSCYMEAreKMANIYLQTLRDRrlyIRCYRELCEHL----PGPH 722
Cdd:TIGR02917 119 lDDEGAAELLALrgLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLALAENR---FDEARALIDEVltadPGNV 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 723 TSLLL-GDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDFLccdlgkLLLKL 801
Cdd:TIGR02917 194 DALLLkGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL------AHYLK 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 802 KKVNKAEKVLKQALEHdiVQDIPSMMNDVKCLLLLAKVYKSHKKEavietLNKALDLQSRILKRVPleqpEMIPSQKQLA 881
Cdd:TIGR02917 268 ALVDFQKKNYEDARET--LQDALKSAPEYLPALLLAGASEYQLGN-----LEQAYQYLNQILKYAP----NSHQARRLLA 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 882 ASiciqfaehYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDlceqHCAILLQ--TEQNHETASVLMADL 959
Cdd:TIGR02917 337 SI--------QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE----KAAEYLAkaTELDPENAAARTQLG 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 960 MFR--KQKHEAAInlyhQVLEKAPAWRFLSLILDNFLVLHKLidllrRSGKLEDIPAffeLAKKVSSRVPLEP-GFNYCR 1036
Cdd:TIGR02917 405 ISKlsQGDPSEAI----ADLETAAQLDPELGRADLLLILSYL-----RSGQFDKALA---AAKKLEKKQPDNAsLHNLLG 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1037 GIYCWHiGQPNEALKFLNKARKdstwgqsaiyhmvqicLNPDNevvggeafenqgAESKSNTCSYMEKKELEQQGVSTAE 1116
Cdd:TIGR02917 473 AIYLGK-GDLAKAREAFEKALS----------------IEPDF------------FPAAANLARIDIQEGNPDDAIQRFE 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1117 KLLREfYPHSdssqtqLRLLQGLCRLATReKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAK 1196
Cdd:TIGR02917 524 KVLTI-DPKN------LRAILALAGLYLR-TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1197 TpwvlseAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYK--LAWKySHH 1274
Cdd:TIGR02917 596 A------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKraLELK-PDN 668
|
730 740 750
....*....|....*....|....*....|..
gi 2217342414 1275 ANPAIGfkLAFNYLKDKKFVEAIEICNDVSQQ 1306
Cdd:TIGR02917 669 TEAQIG--LAQLLLAAKRTESAKKIAKSLQKQ 698
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
475-680 |
5.57e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 64.75 E-value: 5.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 475 LLKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELG 554
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 555 VSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPsQRASILLELVEALRLNGELHE 634
Cdd:COG2956 171 LKLD---PDCARALLLLAELYLEQGDYEEAIAALERALEQ----------------DP-DYLPALPRLAELYEKLGDPEE 230
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2217342414 635 ATKVMQDTINEFGGTPEENRItianVDLVLSKGNVDVALNMLRNIL 680
Cdd:COG2956 231 ALELLRKALELDPSDDLLLAL----ADLLERKEGLEAALALLERQL 272
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
476-594 |
9.54e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.98 E-value: 9.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 476 LKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGV 555
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 2217342414 556 SHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4783 100 KLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
889-982 |
1.96e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.02 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 889 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 968
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|....
gi 2217342414 969 AINLYHQVLEKAPA 982
Cdd:COG4235 104 AIAAWQKLLALLPA 117
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
664-1279 |
3.11e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 64.72 E-value: 3.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 664 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtlrdrrlyircyrelcehlpgphtsllLGDALMSILEPEKALEv 743
Cdd:TIGR02917 33 LQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLA---------------------------LGDYAAAEKELRKALS- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 744 ydeayrQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF--LCCDLGKLLLKLKKVNKAEKVLKQALEHDiVQ 821
Cdd:TIGR02917 85 ------LGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAaeLLALRGLAYLGLGQLELAQKSYEQALAID-PR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 822 DIPSMMNdvkclllLAKVYKSHKKEAvietlnKALDLQSRILKrvplEQPEMIPSQkQLAASIciqfaehYLAEKEYDKA 901
Cdd:TIGR02917 158 SLYAKLG-------LAQLALAENRFD------EARALIDEVLT----ADPGNVDAL-LLKGDL-------LLSLGNIELA 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 902 VQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAP 981
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 982 AwrFLSLILDNFLVLHKLIDLLRRSGKLEDIPAFFE---LAKKVSSRVPLEpgfnycrgiycwhIGQPNEALKFLNKArk 1058
Cdd:TIGR02917 293 E--YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPnshQARRLLASIQLR-------------LGRVDEAIATLSPA-- 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1059 dstwgqsaiyhmvqICLNPDNEvvggEAFENQGAEsksntcsYMEKKELEQqgvstAEKLL---REFYPHSDSSQTQLrl 1135
Cdd:TIGR02917 356 --------------LGLDPDDP----AALSLLGEA-------YLALGDFEK-----AAEYLakaTELDPENAAARTQL-- 403
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1136 lqGLCRLATREKanmEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRL-AKTPwvlseaeDLEKSWLLL 1214
Cdd:TIGR02917 404 --GISKLSQGDP---SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLeKKQP-------DNASLHNLL 471
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217342414 1215 ADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAI 1279
Cdd:TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
686-861 |
3.83e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.95 E-value: 3.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 686 YMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGPHTSL-LLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHA 764
Cdd:COG0457 7 DAEAYNNLGLAYRR-LGRYEEAIEDYEKALELDPDDAEALyNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 765 YVKAHQYTEAIEYYEAAQKINGQDFLCCD-LGKLLLKLKKVNKAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVY-KS 842
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPDDAEALYnLGLALLELGRYDEAIEAYERALELDP--------DDADALYNLGIALeKL 157
|
170
....*....|....*....
gi 2217342414 843 HKKEAVIETLNKALDLQSR 861
Cdd:COG0457 158 GRYEEALELLEKLEAAALA 176
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1101-1306 |
4.06e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 62.05 E-value: 4.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1101 YMEKKELEQqGVSTAEKLLrefyphsDSSQTQLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVF 1180
Cdd:COG2956 52 YRRRGEYDR-AIRIHQKLL-------ERDPDRAEALLELAQDYLKAG-LLDRAEELLEKLLELDPDDAEALRLLAEIYEQ 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1181 LKQIPKARMQLKRLAKtpwvlsEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKD 1260
Cdd:COG2956 123 EGDWEKAIEVLERLLK------LGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2217342414 1261 AVTNYKLAWKYSHHANPAIgFKLAFNYLKDKKFVEAIEICNDVSQQ 1306
Cdd:COG2956 197 AIAALERALEQDPDYLPAL-PRLAELYEKLGDPEEALELLRKALEL 241
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
664-788 |
8.13e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.28 E-value: 8.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 664 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALE 742
Cdd:COG4783 15 LLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQ-LGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDYDEALA 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2217342414 743 VYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 788
Cdd:COG4783 94 LLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
487-594 |
9.00e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.09 E-value: 9.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG3914 105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD---PDNAE 181
|
90 100
....*....|....*....|....*...
gi 2217342414 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
920-1256 |
1.71e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 920 LELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrflslilDNFLVLHKL 999
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP---------DRAEALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1000 IDLLRRSGKLEdipaffelakkvssrvplepgfnycrgiycwhigqpnEALKFLNKARKDSTWGQSAIYHMVQIclnpdn 1079
Cdd:COG2956 83 AQDYLKAGLLD-------------------------------------RAEELLEKLLELDPDDAEALRLLAEI------ 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1080 evvggeafenqgaesksntcsYMEKKELEQqGVSTAEKLLREfypHSDSSQTQLRLLQglcrlATREKANMEAALGSFIQ 1159
Cdd:COG2956 120 ---------------------YEQEGDWEK-AIEVLERLLKL---GPENAHAYCELAE-----LYLEQGDYDEAIEALEK 169
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1160 IAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNK 1239
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALER------ALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
330
....*....|....*..
gi 2217342414 1240 SCYKAYEYMGFIMEKEQ 1256
Cdd:COG2956 244 SDDLLLALADLLERKEG 260
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
492-594 |
4.32e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.35 E-value: 4.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 492 ALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIK 571
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNL 78
|
90 100
....*....|....*....|...
gi 2217342414 572 ARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKL 101
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
689-818 |
5.84e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 5.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 689 AREKMANIYLQTLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVK 767
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFnLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2217342414 768 AHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKKVNKAEKVLKQALEHD 818
Cdd:COG3914 159 LGRLEEAIAALRRALELDPDNAeALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
487-594 |
1.31e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD---PDNPE 86
|
90 100
....*....|....*....|....*...
gi 2217342414 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
881-1021 |
2.67e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.04 E-value: 2.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 881 AASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLM 960
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217342414 961 FRKQKHEAAINLYHQVLEKAPawrflslilDNFLVLHKLIDLLRRSGKLEDIPAFFELAKK 1021
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
614-789 |
3.45e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.08 E-value: 3.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 614 QRASILLELVEALRLNGELHEATKVMQDTINEFGGTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKM 693
Cdd:COG3914 39 AALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 694 ANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYT 772
Cdd:COG3914 119 GNLLLA-LGRLEEALAALRRALALNPDfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197
|
170
....*....|....*..
gi 2217342414 773 EAIEYYEAAQKINGQDF 789
Cdd:COG3914 198 EAIAAYRRALELDPDNA 214
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
688-818 |
5.39e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.27 E-value: 5.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 688 EAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYV 766
Cdd:COG4783 5 EALYALAQALLL-AGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2217342414 767 KAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEHD 818
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHpEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
915-1058 |
6.35e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 6.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 915 DNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrflslilDNFL 994
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPE 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217342414 995 VLHKLIDLLRRSGKLEDIPAFFELAKKVSsrvPLEPGFNYCRGIYCWHIGQPNEALKFLNKARK 1058
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
739-858 |
1.18e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 739 KALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEH 817
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNaDALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2217342414 818 DivqdiPsmmNDVKCLLLLAKVY-KSHKKEAVIETLNKALDL 858
Cdd:COG4235 81 D-----P---DNPEALYLLGLAAfQQGDYAEAIAAWQKLLAL 114
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
112-286 |
1.39e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 54.24 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 112 ALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYF 190
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRY---EEALADYEQALElDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 191 MMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDACQILTVHeLAREGNMTTATN 270
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA-LEKLGRYEEALE 165
|
170
....*....|....*.
gi 2217342414 271 HVRNLIKALETREPEN 286
Cdd:COG0457 166 LLEKLEAAALAALLAA 181
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
751-1020 |
2.72e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.47 E-value: 2.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 751 NPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKKVNKAEKVLKQALEHDIvqdipsmmND 829
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAeALYNLGLAYLRLGRYEEALADYEQALELDP--------DD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 830 VKCLLLLAKVY-KSHKKEAVIETLNKALDLQSRIlkrvpleqpemipsqkqlaASICIQFAEHYLAEKEYDKAVQSYKDV 908
Cdd:COG0457 76 AEALNNLGLALqALGRYEEALEDYDKALELDPDD-------------------AEALYNLGLALLELGRYDEAIEAYERA 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 909 FSYLPTDNKVMLELAQLYLLQGHLDLCEQHCaillqtEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPAWRFLSL 988
Cdd:COG0457 137 LELDPDDADALYNLGIALEKLGRYEEALELL------EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210
|
250 260 270
....*....|....*....|....*....|..
gi 2217342414 989 ILDNFLVLHKLIDLLRRSGKLEDIPAFFELAK 1020
Cdd:COG0457 211 LAILTLAALAELLLLALALLLALRLAALALYQ 242
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
725-788 |
3.86e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.39 E-value: 3.86e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217342414 725 LLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 788
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN 84
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
488-640 |
5.92e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.84 E-value: 5.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 488 KAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLY 567
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDFAEA 148
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217342414 568 HLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPsQRASILLELVEALRLNGELHEATKVMQ 640
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALEL----------------DP-DNAEALNNLGNALQDLGRLEEAIAAYR 204
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
672-788 |
1.38e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 672 ALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQ 750
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLR-LGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*...
gi 2217342414 751 NPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 788
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
112-247 |
3.10e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.26 E-value: 3.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 112 ALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYF 190
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDL---DEAIVLLHEALElDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217342414 191 MMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESN 247
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1149-1268 |
3.54e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.88 E-value: 3.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1149 NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLaktpwvLSEAEDLEKSWLLLADIYCQGSKFDLAL 1228
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPEARLNLGLALLKAGDYDEAL 92
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2217342414 1229 ELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLA 1268
Cdd:COG4783 93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1168-1298 |
4.59e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1168 VPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEY 1247
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEK------ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2217342414 1248 MGFIMEKEQSYKDAVTNYKLAWKYsHHANPAIGFKLAFNYLKDKKFVEAIE 1298
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIA 127
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1145-1301 |
4.60e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 49.62 E-value: 4.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1145 REKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKF 1224
Cdd:COG0457 19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ------ALELDPDDAEALNNLGLALQALGRY 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217342414 1225 DLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHaNPAIGFKLAFNYLKDKKFVEAIEICN 1301
Cdd:COG0457 93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPD-DADALYNLGIALEKLGRYEEALELLE 168
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
616-791 |
4.70e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 51.15 E-value: 4.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 616 ASILLELVEALRLNGELHEATKVMQDTINEFGGTPEenriTIANVDLVLSK-GNVDVALNMLRNILPKQSCYMEAREKMA 694
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAE----ALFNLGNLLLAlGRLEEALAALRRALALNPDFAEAYLNLG 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 695 NIyLQTLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTE 773
Cdd:COG3914 154 EA-LRRLGRLEEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232
|
170
....*....|....*...
gi 2217342414 774 AIEYYEAAQKINGQDFLC 791
Cdd:COG3914 233 YDRFEELLAALARGPSEL 250
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
486-544 |
4.73e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.31 E-value: 4.73e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217342414 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 544
Cdd:COG4235 43 ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
43-250 |
4.74e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.73 E-value: 4.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 43 FFKAYGVLKEEHIQDAISDLES-IRHHPD-VSLCSTMALIYAhKRCEIidREAIQELEYSLKeiRKTVSGTALYYAGLFL 120
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEaLELDPEtVEAHLALGNLYR-RRGEY--DRAIRIHQKLLE--RDPDRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 121 WLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYFMMQQNYSEA 199
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW---EKAIEVLERLLKlGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2217342414 200 LEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDA 250
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
616-790 |
6.94e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.85 E-value: 6.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 616 ASILLELVEALRLNGELHEATKVMQDTINEFGGTPEenriTIANVDLVLSK-GNVDVALNMLRNILPKQSCYMEAREKMA 694
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE----ALYNLGLAYLRlGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 695 NIYLQtLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTE 773
Cdd:COG0457 84 LALQA-LGRYEEALEDYDKALELDPDDAEALYnLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170
....*....|....*..
gi 2217342414 774 AIEYYEAAQKINGQDFL 790
Cdd:COG0457 163 ALELLEKLEAAALAALL 179
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
486-594 |
9.89e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.46 E-value: 9.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHP 565
Cdd:COG0457 34 ALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD---PDDA 110
|
90 100
....*....|....*....|....*....
gi 2217342414 566 LYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG0457 111 EALYNLGLALLELGRYDEAIEAYERALEL 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
738-821 |
1.50e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.49 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 738 EKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALE 816
Cdd:COG5010 71 EESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNpNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
....*
gi 2217342414 817 HDIVQ 821
Cdd:COG5010 151 TSPLK 155
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1152-1268 |
1.76e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1152 AALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELL 1231
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEK------ALRLDPDNADALLDLAEALLAAGDTEEAEELL 74
|
90 100 110
....*....|....*....|....*....|....*..
gi 2217342414 1232 RRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLA 1268
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1149-1236 |
1.99e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1149 NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLAL 1228
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER------ALALDPDNPEALYLLGLAAFQQGDYAEAI 105
|
....*...
gi 2217342414 1229 ELLRRCVQ 1236
Cdd:COG4235 106 AAWQKLLA 113
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
489-598 |
2.13e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.11 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 489 AAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYH 568
Cdd:COG5010 49 KLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS---PDNPNAY 125
|
90 100 110
....*....|....*....|....*....|
gi 2217342414 569 LIKARALNKAGDYPEAIKTLKMVIKLPALK 598
Cdd:COG5010 126 SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
889-981 |
2.82e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.18 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 889 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 968
Cdd:COG4783 45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
90
....*....|...
gi 2217342414 969 AINLYHQVLEKAP 981
Cdd:COG4783 125 AIAALEKALELDP 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
517-594 |
3.41e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 3.41e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217342414 517 LQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD---PDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
486-589 |
3.85e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.07 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGM---CF-HCLELgVSHNFQV 561
Cdd:COG3914 138 ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEaiaAYrRALEL-DPDNADA 216
|
90 100
....*....|....*....|....*...
gi 2217342414 562 RDHPLYHLIKARALNKAGDYPEAIKTLK 589
Cdd:COG3914 217 HSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
487-594 |
4.12e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.54 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD---PDDAE 77
|
90 100
....*....|....*....|....*...
gi 2217342414 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALEL 105
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1103-1270 |
4.13e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.07 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1103 EKKELEQQGVSTAEKLLREFYPHSDSSQTQLRLLQGLCRLAtREKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLK 1182
Cdd:COG3914 48 LAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLL-QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1183 QIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAV 1262
Cdd:COG3914 127 RLEEALAALRR------ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200
|
....*...
gi 2217342414 1263 TNYKLAWK 1270
Cdd:COG3914 201 AAYRRALE 208
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1115-1298 |
7.49e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 47.30 E-value: 7.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1115 AEKLLREFYPHSDSSQTQLRLLQGLCRLATREKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRL 1194
Cdd:COG3914 25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1195 aktpwvLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYsHH 1274
Cdd:COG3914 105 ------LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL-DP 177
|
170 180
....*....|....*....|....
gi 2217342414 1275 ANPAIGFKLAFNYLKDKKFVEAIE 1298
Cdd:COG3914 178 DNAEALNNLGNALQDLGRLEEAIA 201
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
688-785 |
8.23e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.57 E-value: 8.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 688 EAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYV 766
Cdd:COG5010 55 AIESPSDNLYNK-LGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133
|
90
....*....|....*....
gi 2217342414 767 KAHQYTEAIEYYEAAQKIN 785
Cdd:COG5010 134 SLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
508-594 |
9.00e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 9.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 508 GELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHcLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKT 587
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLD---PNNAEALLNLAELLLELGDYDEALAY 81
|
....*..
gi 2217342414 588 LKMVIKL 594
Cdd:COG3063 82 LERALEL 88
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
499-784 |
9.87e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 46.06 E-value: 9.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 499 LMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELgvSHNFQVRDHPLYHLIKARALNKA 578
Cdd:COG3071 21 LEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQ--ALELAPEAELAVLLTRAELLLDQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 579 GDYPEAIKTLKmviklpALKKEEGRkflrpsvqpsqRASILLELVEALRLNGELHEATKVMQDTINEFGGTPEE--NRIT 656
Cdd:COG3071 99 GQAEQALATLE------ALRAGAPR-----------HPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEaqALER 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 657 IANVDLVLSKGNVDVALNMLRNILPKQSCYMEArekMANIYLQTLRDRRLYIRCYRELCEHLP-GPHTSL--LLGDALMS 733
Cdd:COG3071 162 RAYLGLLRQAARDAEALKALWKALPRAERRDPE---LAAAYARALIALGDHDEAERLLREALKrQWDPRLvrLYGRLQGG 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2217342414 734 ilEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKI 784
Cdd:COG3071 239 --DPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL 287
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
892-984 |
9.92e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 9.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 892 YLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQhCAILLQTEQNHETASVLMADLMFRKQKHEAAIN 971
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 2217342414 972 LYHQVLEKAP-AWR 984
Cdd:COG3063 81 YLERALELDPsALR 94
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
828-1021 |
1.08e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 828 NDVKCLLLLAKVYKSHKK-EAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAASiciqfaehYLAEKEYDKAVQSYK 906
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRyEEAIEDYEKALELD-----------PDDAEALYNLGLA--------YLRLGRYEEALADYE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 907 DVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrfl 986
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP----- 141
|
170 180 190
....*....|....*....|....*....|....*
gi 2217342414 987 slilDNFLVLHKLIDLLRRSGKLEDIPAFFELAKK 1021
Cdd:COG0457 142 ----DDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
736-818 |
1.12e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 736 EPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEyYEAAQKINGQDFLC-CDLGKLLLKLKKVNKAEKVLKQA 814
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEAlLNLAELLLELGDYDEALAYLERA 85
|
....
gi 2217342414 815 LEHD 818
Cdd:COG3063 86 LELD 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
892-981 |
1.15e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 892 YLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAIN 971
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 2217342414 972 LYHQVLEKAP 981
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
900-990 |
1.16e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 900 KAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEK 979
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|....*
gi 2217342414 980 AP----AWRFLSLIL 990
Cdd:COG4235 81 DPdnpeALYLLGLAA 95
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1158-1299 |
1.30e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1158 IQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTPWVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQY 1237
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217342414 1238 NKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYShHANPAIGFKLAFNYLKDKKFVEAIEI 1299
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS-PDNPNAYSNLAALLLSLGQDDEAKAA 144
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
500-635 |
1.56e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 45.57 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 500 MAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLElgvshnfqvrdhplyhlikaRALNKAG 579
Cdd:PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALE--------------------RVEEQDP 245
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217342414 580 DY-PEAIKTLKMVIKlpALKK-EEGRKFLRPSVQPSQRASILLELVEALRLNGELHEA 635
Cdd:PRK11788 246 EYlSEVLPKLMECYQ--ALGDeAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAA 301
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
486-589 |
2.12e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.61 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHP 565
Cdd:COG0457 68 ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---PDDA 144
|
90 100
....*....|....*....|....
gi 2217342414 566 LYHLIKARALNKAGDYPEAIKTLK 589
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLE 168
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
521-822 |
5.09e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.46 E-value: 5.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 521 LELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkke 600
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD---PDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 601 egrkflrpsvQPsQRASILLELVEALRLNGELHEAtkvmqdtinefggtpeenritianvdlvlskgnvdvaLNMLRNIL 680
Cdd:COG0457 72 ----------DP-DDAEALNNLGLALQALGRYEEA-------------------------------------LEDYDKAL 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 681 PKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLAS 759
Cdd:COG0457 104 ELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYnLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217342414 760 RIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVLKQALEHDIVQD 822
Cdd:COG0457 183 LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
892-1015 |
7.18e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.64 E-value: 7.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 892 YLAEKEYDKAVQSYKDVFSYLPTDNKVML-----ELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKH 966
Cdd:PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY 230
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2217342414 967 EAAINLYHQVLEKAPAwrFLSLILDnflvlhKLIDLLRRSGKLEDIPAF 1015
Cdd:PRK11788 231 AAAIEALERVEEQDPE--YLSEVLP------KLMECYQALGDEAEGLEF 271
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
895-959 |
1.28e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.33 E-value: 1.28e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217342414 895 EKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADL 959
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
892-981 |
1.41e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 892 YLAEKEYDKAVQSYKDVFSYLPTDN---KVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETAS---VLMADLMFRKQK 965
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGD 82
|
90
....*....|....*.
gi 2217342414 966 HEAAINLYHQVLEKAP 981
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
91-244 |
1.79e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.02 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 91 REAIQELEYSLKEirKTVSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYL 170
Cdd:COG2956 127 EKAIEVLERLLKL--GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDY---EEAIAAL 201
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217342414 171 EQGI-QDTKDVLGLMGKAMYFMMQQNYSEALEVVNQItVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKD 244
Cdd:COG2956 202 ERALeQDPDYLPALPRLAELYEKLGDPEEALELLRKA-LELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
92-201 |
1.86e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 92 EAIQELEYSLKEIRKtvSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLE 171
Cdd:COG4235 1 EAIARLRQALAANPN--DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDT---EEAEELLE 75
|
90 100 110
....*....|....*....|....*....|.
gi 2217342414 172 QGIQ-DTKDVLGLMGKAMYFMMQQNYSEALE 201
Cdd:COG4235 76 RALAlDPDNPEALYLLGLAAFQQGDYAEAIA 106
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
1109-1241 |
1.99e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 42.10 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1109 QQGVSTAEKLLRefyphSDSSQTQLRLLQGLCRLATREKA--NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPK 1186
Cdd:PRK11788 158 QKAIDVAERLEK-----LGGDSLRVEIAHFYCELAQQALArgDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217342414 1187 ARMQLKRLAKT-PWVLSEAEDlekswlLLADIYCQGSKFDLALELLRRCVQYNKSC 1241
Cdd:PRK11788 233 AIEALERVEEQdPEYLSEVLP------KLMECYQALGDEAEGLEFLRRALEEYPGA 282
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
507-544 |
2.11e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 2.11e-03
10 20 30
....*....|....*....|....*....|....*...
gi 2217342414 507 SGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 544
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRL 38
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
711-785 |
6.94e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.87 E-value: 6.94e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217342414 711 YRELCEHL---PGPHTSLLLGDALMSILEPEKALEVYDEAY-RQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKIN 785
Cdd:COG4700 76 LRELEKALefaDTVQNRVRLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKN 154
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1206-1301 |
8.60e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.60 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1206 DLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHaNPAIGFKLAF 1285
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD-DAEALNNLGL 84
|
90
....*....|....*.
gi 2217342414 1286 NYLKDKKFVEAIEICN 1301
Cdd:COG0457 85 ALQALGRYEEALEDYD 100
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1192-1299 |
8.69e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.06 E-value: 8.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217342414 1192 KRLAKTPwvlseaEDLEkSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKY 1271
Cdd:COG4235 8 QALAANP------NDAE-GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*...
gi 2217342414 1272 sHHANPAIGFKLAFNYLKDKKFVEAIEI 1299
Cdd:COG4235 81 -DPDNPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| |
