|
Name |
Accession |
Description |
Interval |
E-value |
| KISc_CENP_E |
cd01374 |
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ... |
6-329 |
3.16e-171 |
|
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276825 [Multi-domain] Cd Length: 321 Bit Score: 528.83 E-value: 3.16e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 6 AVAVCVRVRPLNSREESLGEtaQVYWKTDNNVIYQVD-GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFA 84
Cdd:cd01374 1 KITVTVRVRPLNSREIGINE--QVAWEIDNDTIYLVEpPSTSFTFDHVFGGDSTNREVYELIAKPVVKSALEGYNGTIFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 85 YGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTqkMKPLIIREDVNRNVYV 164
Cdd:cd01374 79 YGQTSSGKTFTMSGDEDEPGIIPLAIRDIFSKIQDTPDREFLLRVSYLEIYNEKINDLLSPT--SQNLKIRDDVEKGVYV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 165 ADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPsnCEGSVKVSHLNLVDLAGSERAAQ 244
Cdd:cd01374 157 AGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEL--EEGTVRVSTLNLIDLAGSERAAQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 245 TGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS--FDETLTALQF 322
Cdd:cd01374 235 TGAAGVRRKEGSHINKSLLTLGTVISKLSEGKVGGHIPYRDSKLTRILQPSLGGNSRTAIICTITPAEshVEETLNTLKF 314
|
....*..
gi 2217348656 323 ASTAKYM 329
Cdd:cd01374 315 ASRAKKI 321
|
|
| KISc |
smart00129 |
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ... |
6-336 |
3.48e-143 |
|
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Pssm-ID: 214526 [Multi-domain] Cd Length: 335 Bit Score: 449.72 E-value: 3.48e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 6 AVAVCVRVRPLNSREESLGETAQVYW------KTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYN 79
Cdd:smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFpdkvgkTLTVRSPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVLEGYN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 80 GTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQKmkPLIIREDV 158
Cdd:smart00129 81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEKIDKReEGWQFSVKVSYLEIYNEKIRDLLNPSSK--KLEIREDE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 159 NRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSnceGSVKVSHLNLVDLAG 238
Cdd:smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSS---GSGKASKLNLVDLAG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 239 SERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDET 316
Cdd:smart00129 236 SERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPssSNLEET 315
|
330 340
....*....|....*....|
gi 2217348656 317 LTALQFASTAKYMKNTPYVN 336
Cdd:smart00129 316 LSTLRFASRAKEIKNKPIVN 335
|
|
| Kinesin |
pfam00225 |
Kinesin motor domain; |
12-327 |
7.06e-139 |
|
Kinesin motor domain;
Pssm-ID: 459720 [Multi-domain] Cd Length: 326 Bit Score: 437.00 E-value: 7.06e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 12 RVRPLNSREESLGETAQVY------WKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:pfam00225 1 RVRPLNEREKERGSSVIVSvesvdsETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVTIFAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 86 GQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLLCGTQKMK-PLIIREDVNRNVY 163
Cdd:pfam00225 81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsEFSVKVSYLEIYNEKIRDLLSPSNKNKrKLRIREDPKKGVY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 164 VADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSncEGSVKVSHLNLVDLAGSERAA 243
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGG--EESVKTGKLNLVDLAGSERAS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 244 QTGAA-GVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS--FDETLTAL 320
Cdd:pfam00225 239 KTGAAgGQRLKEAANINKSLSALGNVISALADKK-SKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSsnYEETLSTL 317
|
....*..
gi 2217348656 321 QFASTAK 327
Cdd:pfam00225 318 RFASRAK 324
|
|
| KISc |
cd00106 |
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ... |
6-327 |
1.01e-136 |
|
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276812 [Multi-domain] Cd Length: 326 Bit Score: 430.91 E-value: 1.01e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 6 AVAVCVRVRPLNSREeslGETAQVYWKTDNNVIYQVD-------GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGY 78
Cdd:cd00106 1 NVRVAVRVRPLNGRE---ARSAKSVISVDGGKSVVLDppknrvaPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSALEGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 79 NGTIFAYGQTASGKTYTMMGS-EDHLGVIPRAIHDIFQKIKKFP--DREFLLRVSYMEIYNETITDLLCGTQKmKPLIIR 155
Cdd:cd00106 78 NGTIFAYGQTGSGKTYTMLGPdPEQRGIIPRALEDIFERIDKRKetKSSFSVSASYLEIYNEKIYDLLSPVPK-KPLSLR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 156 EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKgepSNCEGSVKVSHLNLVD 235
Cdd:cd00106 157 EDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNR---EKSGESVTSSKLNLVD 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 236 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSF 313
Cdd:cd00106 234 LAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALADGQ-NKHIPYRDSKLTRLLQDSLGGNSKTIMIACISPssENF 312
|
330
....*....|....
gi 2217348656 314 DETLTALQFASTAK 327
Cdd:cd00106 313 EETLSTLRFASRAK 326
|
|
| KISc_KIF4 |
cd01372 |
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ... |
6-330 |
2.88e-106 |
|
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276823 [Multi-domain] Cd Length: 341 Bit Score: 343.93 E-value: 2.88e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 6 AVAVCVRVRPLNSREESLGETAQVYWkTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:cd01372 2 SVRVAVRVRPLLPKEIIEGCRICVSF-VPGEPQVTVGTDKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGYNATVLAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 86 GQTASGKTYTMMGS------EDHLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLLC-GTQKMKPLIIRED 157
Cdd:cd01372 81 GQTGSGKTYTMGTAytaeedEEQVGIIPRAIQHIFKKIEKKKDTfEFQLKVSFLEIYNEEIRDLLDpETDKKPTISIRED 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 158 VNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNC-----EGSVKVSHLN 232
Cdd:cd01372 161 SKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKNGPIAPmsaddKNSTFTSKFH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 233 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ-VGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV 311
Cdd:cd01372 241 FVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALGDESkKGAHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPA 320
|
330 340
....*....|....*....|.
gi 2217348656 312 S--FDETLTALQFASTAKYMK 330
Cdd:cd01372 321 DsnFEETLNTLKYANRARNIK 341
|
|
| KISc_KIF3 |
cd01371 |
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ... |
6-327 |
3.82e-100 |
|
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276822 [Multi-domain] Cd Length: 334 Bit Score: 325.95 E-value: 3.82e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 6 AVAVCVRVRPLNSREESLGETAQVYWKTDNNVIyQVDGS--------KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQG 77
Cdd:cd01371 2 NVKVVVRCRPLNGKEKAAGALQIVDVDEKRGQV-SVRNPkataneppKTFTFDAVFDPNSKQLDVYDETARPLVDSVLEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 78 YNGTIFAYGQTASGKTYTMMG--SEDHL-GVIPRAIHDIFQKIKKFPD-REFLLRVSYMEIYNETITDLLcGTQKMKPLI 153
Cdd:cd01371 81 YNGTIFAYGQTGTGKTYTMEGkrEDPELrGIIPNSFAHIFGHIARSQNnQQFLVRVSYLEIYNEEIRDLL-GKDQTKRLE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 154 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSncEGSVKVSHLNL 233
Cdd:cd01371 160 LKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEKGEDG--ENHIRVGKLNL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 234 VDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS- 312
Cdd:cd01371 238 VDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVDGK-STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADy 316
|
330
....*....|....*.
gi 2217348656 313 -FDETLTALQFASTAK 327
Cdd:cd01371 317 nYDETLSTLRYANRAK 332
|
|
| KISc_KIF1A_KIF1B |
cd01365 |
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ... |
7-336 |
1.49e-97 |
|
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Pssm-ID: 276816 [Multi-domain] Cd Length: 361 Bit Score: 319.68 E-value: 1.49e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 7 VAVCVRVRPLNSREESLGE-----------TAQVYWKTDNNVIYQVDGSKSFNFDRVF--HGNE-----TTKNVYEEIAA 68
Cdd:cd01365 3 VKVAVRVRPFNSREKERNSkcivqmsgketTLKNPKQADKNNKATREVPKSFSFDYSYwsHDSEdpnyaSQEQVYEDLGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 69 PIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDRE--FLLRVSYMEIYNETITDLLCGT 146
Cdd:cd01365 83 ELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQEQPGIIPRLCEDLFSRIADTTNQNmsYSVEVSYMEIYNEKVRDLLNPK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 147 QKMKP--LIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFrMILESREKGEPSNCEG 224
Cdd:cd01365 163 PKKNKgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVF-TIVLTQKRHDAETNLT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 225 SVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGG------FINYRDSKLTRILQNSLGG 298
Cdd:cd01365 242 TEKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskkkssFIPYRDSVLTWLLKENLGG 321
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2217348656 299 NAKTRIICTITPVS--FDETLTALQFASTAKYMKNTPYVN 336
Cdd:cd01365 322 NSKTAMIAAISPADinYEETLSTLRYADRAKKIVNRAVVN 361
|
|
| KISc_KHC_KIF5 |
cd01369 |
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ... |
7-327 |
2.98e-97 |
|
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276820 [Multi-domain] Cd Length: 325 Bit Score: 317.35 E-value: 2.98e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 7 VAVCVRVRPLNSREESLGETAQVYWKTDNNV-IYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:cd01369 4 IKVVCRFRPLNELEVLQGSKSIVKFDPEDTVvIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLNGYNGTIFAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 86 GQTASGKTYTMMGS---EDHLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLLcGTQKmKPLIIREDVNRN 161
Cdd:cd01369 84 GQTSSGKTYTMEGKlgdPESMGIIPRIVQDIFETIYSMDENlEFHVKVSYFEIYMEKIRDLL-DVSK-TNLSVHEDKNRG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 162 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESRekgepSNCEGSVKVSHLNLVDLAGSER 241
Cdd:cd01369 162 PYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQE-----NVETEKKKSGKLYLVDLAGSEK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 242 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTA 319
Cdd:cd01369 237 VSKTGAEGAVLDEAKKINKSLSALGNVINALTDGK-KTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNesETLST 315
|
....*...
gi 2217348656 320 LQFASTAK 327
Cdd:cd01369 316 LRFGQRAK 323
|
|
| KISc_C_terminal |
cd01366 |
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ... |
12-324 |
2.97e-96 |
|
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276817 [Multi-domain] Cd Length: 329 Bit Score: 314.53 E-value: 2.97e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 12 RVRPLNSREESLGETAQVYWKTDNNVI---YQVDGSKSFNFDRVFHGNETTKNVYEEIAaPIIDSAIQGYNGTIFAYGQT 88
Cdd:cd01366 9 RVRPLLPSEENEDTSHITFPDEDGQTIeltSIGAKQKEFSFDKVFDPEASQEDVFEEVS-PLVQSALDGYNVCIFAYGQT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 89 ASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDR--EFLLRVSYMEIYNETITDLLC-GTQKMKPLIIRED-VNRNVYV 164
Cdd:cd01366 88 GSGKTYTMEGPPESPGIIPRALQELFNTIKELKEKgwSYTIKASMLEIYNETIRDLLApGNAPQKKLEIRHDsEKGDTTV 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 165 ADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSvkvshLNLVDLAGSERAAQ 244
Cdd:cd01366 168 TNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGK-----LNLVDLAGSERLNK 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 245 TGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvgGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQF 322
Cdd:cd01366 243 SGATGDRLKETQAINKSLSALGDVISALRQKQ--SHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAesNLNETLNSLRF 320
|
..
gi 2217348656 323 AS 324
Cdd:cd01366 321 AS 322
|
|
| KISc_KIP3_like |
cd01370 |
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ... |
9-327 |
9.42e-93 |
|
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276821 [Multi-domain] Cd Length: 345 Bit Score: 305.42 E-value: 9.42e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 9 VCVRVRPLNSREESLG---------------------ETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIA 67
Cdd:cd01370 4 VAVRVRPFSEKEKNEGfrrivkvmdnhmlvfdpkdeeDGFFHGGSNNRDRRKRRNKELKYVFDRVFDETSTQEEVYEETT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 68 APIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPD-REFLLRVSYMEIYNETITDLLcgT 146
Cdd:cd01370 84 KPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQEPGLMVLTMKELFKRIESLKDeKEFEVSMSYLEIYNETIRDLL--N 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 147 QKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEgsV 226
Cdd:cd01370 162 PSSGPLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDKTASINQQ--V 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 227 KVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD-GQVGGFINYRDSKLTRILQNSLGGNAKTRII 305
Cdd:cd01370 240 RQGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALADpGKKNKHIPYRDSKLTRLLKDSLGGNCRTVMI 319
|
330 340
....*....|....*....|....
gi 2217348656 306 CTITP--VSFDETLTALQFASTAK 327
Cdd:cd01370 320 ANISPssSSYEETHNTLKYANRAK 343
|
|
| KISc_KLP2_like |
cd01373 |
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ... |
6-339 |
2.38e-92 |
|
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276824 [Multi-domain] Cd Length: 347 Bit Score: 304.43 E-value: 2.38e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 6 AVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:cd01373 2 AVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPKTFTFDHVADSNTNQESVFQSVGKPIVESCLSGYNGTIFAY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 86 GQTASGKTYTMMG-SEDHL-------GVIPRAIHDIFQKIKKFPDR-----EFLLRVSYMEIYNETITDLLCGTQkmKPL 152
Cdd:cd01373 82 GQTGSGKTYTMWGpSESDNesphglrGVIPRIFEYLFSLIQREKEKagegkSFLCKCSFLEIYNEQIYDLLDPAS--RNL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 153 IIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGepsNCEGSVKVSHLN 232
Cdd:cd01373 160 KLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKK---ACFVNIRTSRLN 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 233 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGF--INYRDSKLTRILQNSLGGNAKTRIICTITP 310
Cdd:cd01373 237 LVDLAGSERQKDTHAEGVRLKEAGNINKSLSCLGHVINALVDVAHGKQrhVCYRDSKLTFLLRDSLGGNAKTAIIANVHP 316
|
330 340 350
....*....|....*....|....*....|.
gi 2217348656 311 VS--FDETLTALQFASTAKYMKNTPYVNEVS 339
Cdd:cd01373 317 SSkcFGETLSTLRFAQRAKLIKNKAVVNEDT 347
|
|
| KISc_BimC_Eg5 |
cd01364 |
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ... |
7-337 |
5.29e-85 |
|
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276815 [Multi-domain] Cd Length: 353 Bit Score: 283.45 E-value: 5.29e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 7 VAVCVRVRPLNSREESLGETAQVYWKTDNNVI---YQVDGS----KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYN 79
Cdd:cd01364 4 IQVVVRCRPFNLRERKASSHSVVEVDPVRKEVsvrTGGLADksstKTYTFDMVFGPEAKQIDVYRSVVCPILDEVLMGYN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 80 GTIFAYGQTASGKTYTMMGSE-----------DHLGVIPRAIHDIFQKIKKfPDREFLLRVSYMEIYNETITDLL-CGTQ 147
Cdd:cd01364 84 CTIFAYGQTGTGKTYTMEGDRspneeytweldPLAGIIPRTLHQLFEKLED-NGTEYSVKVSYLEIYNEELFDLLsPSSD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 148 KMKPLIIREDVNR--NVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGepSNCEGS 225
Cdd:cd01364 163 VSERLRMFDDPRNkrGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHIKETT--IDGEEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 226 VKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGqvGGFINYRDSKLTRILQNSLGGNAKTRII 305
Cdd:cd01364 241 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER--APHVPYRESKLTRLLQDSLGGRTKTSII 318
|
330 340 350
....*....|....*....|....*....|....
gi 2217348656 306 CTITP--VSFDETLTALQFASTAKYMKNTPYVNE 337
Cdd:cd01364 319 ATISPasVNLEETLSTLEYAHRAKNIKNKPEVNQ 352
|
|
| KISc_KIF23_like |
cd01368 |
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ... |
7-327 |
2.75e-76 |
|
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276819 [Multi-domain] Cd Length: 345 Bit Score: 258.09 E-value: 2.75e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 7 VAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-DGSKS-------------FNFDRVFHGNETTKNVYEEIAAPIID 72
Cdd:cd01368 3 VKVYLRVRPLSKDELESEDEGCIEVINSTTVVLHPpKGSAAnksernggqketkFSFSKVFGPNTTQKEFFQGTALPLVQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 73 SAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKkfpdrEFLLRVSYMEIYNETITDLL-----CGTQ 147
Cdd:cd01368 83 DLLHGKNGLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIG-----GYSVFVSYIEIYNEYIYDLLepspsSPTK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 148 KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMIL---ESREKGEPSNCEG 224
Cdd:cd01368 158 KRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLvqaPGDSDGDVDQDKD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 225 SVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFIN---YRDSKLTRILQNSLGGNAK 301
Cdd:cd01368 238 QITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGTCIEVLRENQLQGTNKmvpFRDSKLTHLFQNYFDGEGK 317
|
330 340
....*....|....*....|....*...
gi 2217348656 302 TRIICTITPVS--FDETLTALQFASTAK 327
Cdd:cd01368 318 ASMIVNVNPCAsdYDETLHVMKFSAIAQ 345
|
|
| KISc_KIF9_like |
cd01375 |
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ... |
6-327 |
2.13e-75 |
|
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276826 [Multi-domain] Cd Length: 334 Bit Score: 254.81 E-value: 2.13e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 6 AVAVCVRVRPLNSREESL------GETAQVYWKTD--NNVIYQVDGSKSFNFDRVFHgNETTKNVYEEIAAPIIDSAIQG 77
Cdd:cd01375 1 KVQAFVRVRPTDDFAHEMikygedGKSISIHLKKDlrRGVVNNQQEDWSFKFDGVLH-NASQELVYETVAKDVVSSALAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 78 YNGTIFAYGQTASGKTYTMMGSED---HLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGT----QKMK 150
Cdd:cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTEnykHRGIIPRALQQVFRMIEERPTKAYTVHVSYLEIYNEQLYDLLSTLpyvgPSVT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 151 PLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKgEPSncEGSVKVSH 230
Cdd:cd01375 160 PMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSR-TLS--SEKYITSK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 231 LNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDgQVGGFINYRDSKLTRILQNSLGGNAKTRIICTIT- 309
Cdd:cd01375 237 LNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQAIIALSD-KDRTHVPFRQSKLTHVLRDSLGGNCNTVMVANIYg 315
|
330
....*....|....*....
gi 2217348656 310 -PVSFDETLTALQFASTAK 327
Cdd:cd01375 316 eAAQLEETLSTLRFASRVK 334
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
34-339 |
6.81e-67 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 238.49 E-value: 6.81e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 34 DNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDI 113
Cdd:COG5059 45 KSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKEL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 114 FQKIKKFPDR-EFLLRVSYMEIYNETITDLLcgTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYG 192
Cdd:COG5059 125 FSKLEDLSMTkDFAVSISYLEIYNEKIYDLL--SPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 193 ETKMNQRSSRSHTIFRMILESREKGEPSNCEGSvkvshLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKL 272
Cdd:COG5059 203 STEINDESSRSHSIFQIELASKNKVSGTSETSK-----LSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINAL 277
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348656 273 SDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAKYMKNTPYVNEVS 339
Cdd:COG5059 278 GDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPssNSFEETINTLKFASRAKSIKNKIQVNSSS 346
|
|
| KISc_KIF2_like |
cd01367 |
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ... |
9-327 |
1.89e-66 |
|
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276818 [Multi-domain] Cd Length: 328 Bit Score: 229.10 E-value: 1.89e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 9 VCVRVRPLNSREESLGETAQVYWKTDNNVI-----YQVDGSK-----SFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGY 78
Cdd:cd01367 4 VCVRKRPLNKKEVAKKEIDVVSVPSKLTLIvhepkLKVDLTKyienhTFRFDYVFDESSSNETVYRSTVKPLVPHIFEGG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 79 NGTIFAYGQTASGKTYTMMGS----EDHLGVIPRAIHDIFQKIKKFPDREFL-LRVSYMEIYNETITDLLcgtQKMKPLI 153
Cdd:cd01367 84 KATCFAYGQTGSGKTYTMGGDfsgqEESKGIYALAARDVFRLLNKLPYKDNLgVTVSFFEIYGGKVFDLL---NRKKRVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 154 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKgepsNCEGSVkvshLNL 233
Cdd:cd01367 161 LREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGT----NKLHGK----LSF 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 234 VDLAGSERAAQTGAAGV-RLKEGCNINRSLFILGQVIKKLSDGQVggFINYRDSKLTRILQNSL-GGNAKTRIICTITP- 310
Cdd:cd01367 233 VDLAGSERGADTSSADRqTRMEGAEINKSLLALKECIRALGQNKA--HIPFRGSKLTQVLKDSFiGENSKTCMIATISPg 310
|
330
....*....|....*...
gi 2217348656 311 -VSFDETLTALQFASTAK 327
Cdd:cd01367 311 aSSCEHTLNTLRYADRVK 328
|
|
| KISc_KID_like |
cd01376 |
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ... |
7-327 |
4.25e-65 |
|
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276827 [Multi-domain] Cd Length: 319 Bit Score: 224.69 E-value: 4.25e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 7 VAVCVRVRPLNSREESLGETAQVYWkTDNNVIYQVDG-----SKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 81
Cdd:cd01376 2 VRVAVRVRPFVDGTAGASDPSCVSG-IDSCSVELADPrnhgeTLKYQFDAFYGEESTQEDIYAREVQPIVPHLLEGQNAT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 82 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLrVSYMEIYNETITDLLcgTQKMKPLIIREDVNRN 161
Cdd:cd01376 81 VFAYGSTGAGKTFTMLGSPEQPGLMPLTVMDLLQMTRKEAWALSFT-MSYLEIYQEKILDLL--EPASKELVIREDKDGN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 162 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREkgepSNCEGSVKVSHLNLVDLAGSER 241
Cdd:cd01376 158 ILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRE----RLAPFRQRTGKLNLIDLAGSED 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 242 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvgGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTA 319
Cdd:cd01376 234 NRRTGNEGIRLKESGAINSSLFVLSKVVNALNKNL--PRIPYRDSKLTRLLQDSLGGGSRCIMVANIAPerTFYQDTLST 311
|
....*...
gi 2217348656 320 LQFASTAK 327
Cdd:cd01376 312 LNFAARSR 319
|
|
| PLN03188 |
PLN03188 |
kinesin-12 family protein; Provisional |
7-362 |
2.03e-63 |
|
kinesin-12 family protein; Provisional
Pssm-ID: 215621 [Multi-domain] Cd Length: 1320 Bit Score: 239.84 E-value: 2.03e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 7 VAVCVRVRPLNSREEslGETAQVYWKTDNNVIyqvdGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYG 86
Cdd:PLN03188 100 VKVIVRMKPLNKGEE--GEMIVQKMSNDSLTI----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYG 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 87 QTASGKTYTMMG-----SEDHL-----GVIPRAIHDIFQKIK----KFPDRE--FLLRVSYMEIYNETITDLLCGTQKmk 150
Cdd:PLN03188 174 QTGSGKTYTMWGpanglLEEHLsgdqqGLTPRVFERLFARINeeqiKHADRQlkYQCRCSFLEIYNEQITDLLDPSQK-- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 151 PLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEpSNCEGSVKVSH 230
Cdd:PLN03188 252 NLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSV-ADGLSSFKTSR 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 231 LNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD-GQVGG--FINYRDSKLTRILQNSLGGNAKTRIICT 307
Cdd:PLN03188 331 INLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEiSQTGKqrHIPYRDSRLTFLLQESLGGNAKLAMVCA 410
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348656 308 ITPVSF--DETLTALQFASTAKYMKNTPYVNEVSTDEalLKRYRKEIMDLKKQLEEV 362
Cdd:PLN03188 411 ISPSQSckSETFSTLRFAQRAKAIKNKAVVNEVMQDD--VNFLREVIRQLRDELQRV 465
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
828-1715 |
2.86e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 112.07 E-value: 2.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 828 DFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQE---RLNEMEQ----LKEQLENRD 900
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAlanEISRLEQqkqiLRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 901 STLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETI 980
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 981 NTLKSKISEEVSRNLHMEENtgetKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLE 1060
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDR----RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1061 sviaEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLaEVEEKLKeksqqlqekq 1140
Cdd:TIGR02168 472 ----EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI-SVDEGYE---------- 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1141 qqllnvqeemsemqkkiNEIENLKNElknkelTLEHMETERLELAQKLNENYEEvksitkerkvlKELQKSFETERDHLR 1220
Cdd:TIGR02168 537 -----------------AAIEAALGG------RLQAVVVENLNAAKKAIAFLKQ-----------NELGRVTFLPLDSIK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1221 GyiREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKShtklqeeipvLHEEQELLPNVKEVSE 1300
Cdd:TIGR02168 583 G--TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNA----------LELAKKLRPGYRIVTL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1301 TQETMNELELLTEQSTTKDSTTLARiEMERLRLNEKFQESQEEIKSLTKERdnlktikEALEVKHDQLKEHIRETLAKIQ 1380
Cdd:TIGR02168 651 DGDLVRPGGVITGGSAKTNSSILER-RREIEELEEKIEELEEKIAELEKAL-------AELRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1381 ESQskQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQ 1460
Cdd:TIGR02168 723 ELS--RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1461 LKENIKEIVAKHLETEEElkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNiKQI 1540
Cdd:TIGR02168 801 LREALDELRAELTLLNEE-------AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE-ELE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1541 SEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEivakm 1620
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE----- 947
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1621 kesqekEYQFLKMTAVNETQEKMCEIEHLKEQfetqklnLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLkv 1700
Cdd:TIGR02168 948 ------EYSLTLEEAEALENKIEDDEEEARRR-------LKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDL-- 1012
|
890
....*....|....*
gi 2217348656 1701 erDQLKENLRETITR 1715
Cdd:TIGR02168 1013 --TEAKETLEEAIEE 1025
|
|
| Motor_domain |
cd01363 |
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ... |
9-269 |
4.45e-24 |
|
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.
Pssm-ID: 276814 [Multi-domain] Cd Length: 170 Bit Score: 101.27 E-value: 4.45e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 9 VCVRVRPLNSREESlgetaqvywktdnnviyqvDGSKSFNFDRVFHGNETTKNVYEeIAAPIIDSAIQGYNG-TIFAYGQ 87
Cdd:cd01363 1 VLVRVNPFKELPIY-------------------RDSKIIVFYRGFRRSESQPHVFA-IADPAYQSMLDGYNNqSIFAYGE 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 88 TASGKTYTMMgsedhlGVIPRAIHDIFQKIKKfpdrefllrvsymeiynetitdllcgtqkmkpliiredvNRNVYVADL 167
Cdd:cd01363 61 SGAGKTETMK------GVIPYLASVAFNGINK---------------------------------------GETEGWVYL 95
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 168 TEEVVYTSEMALKWITKGEKSRHyGETKMNQRSSRSHTIFRMilesrekgepsncegsvkvshlnLVDLAGSERaaqtga 247
Cdd:cd01363 96 TEITVTLEDQILQANPILEAFGN-AKTTRNENSSRFGKFIEI-----------------------LLDIAGFEI------ 145
|
250 260
....*....|....*....|..
gi 2217348656 248 agvrlkegcnINRSLFILGQVI 269
Cdd:cd01363 146 ----------INESLNTLMNVL 157
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1082-1876 |
4.46e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 105.14 E-value: 4.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1082 ENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIE 1161
Cdd:TIGR02168 222 LRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1162 N----LKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL 1237
Cdd:TIGR02168 302 QqkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1238 KIAHIHLKEHQETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQELlPNVKEVSETQETMNELELLTEQSTT 1317
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARL---ERLEDRRERLQQEIEELLKKLEE-AELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1318 KDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKE---------HIRETLAKIQESQSKQEQ 1388
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAllknqsglsGILGVLSELISVDEGYEA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1389 SLN----------MKEKDNETTKIVSEMEQ------------------FKPKDSALLRIEIEMLGLSKRLQESHDEMKSV 1440
Cdd:TIGR02168 538 AIEaalggrlqavVVENLNAAKKAIAFLKQnelgrvtflpldsikgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1441 AKEKDDLQRLQEVLQSESDQLKENIK---------EIVAKH--------------LETEEELKVAHCCLKEQEETINELR 1497
Cdd:TIGR02168 618 LSYLLGGVLVVDDLDNALELAKKLRPgyrivtldgDLVRPGgvitggsaktnssiLERRREIEELEEKIEELEEKIAELE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1498 VNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEeqfniKQISEVQEKVNELKQFKEHRkakDSALQSIESKMLELTNR 1577
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALR-----KDLARLEAEVEQLEERIAQL---SKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1578 LQESQEEIQIMIKEKEEMKRVQEALQIERDQLKEntkeivakMKESQEKEYQFLKmTAVNETQEKMCEIEHlkeqfetqk 1657
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALRE--------ALDELRAELTLLN-EEAANLRERLESLER--------- 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1658 lNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETI 1737
Cdd:TIGR02168 832 -RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1738 DKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELkaNEHQLITLKKDVNETQKKVSEMEQLKKQIKdqSLTLSKLEIEN 1817
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERL--SEEYSLTLEEAEALENKIEDDEEEARRRLK--RLENKIKELGP 986
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348656 1818 LNLAQklhenLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETkarDLEIQQELKTA 1876
Cdd:TIGR02168 987 VNLAA-----IEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI---DREARERFKDT 1037
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1163-1896 |
4.66e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 98.21 E-value: 4.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1163 LKNELKNKELTL-----EHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL 1237
Cdd:TIGR02168 218 LKAELRELELALlvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1238 KIAHIHLKEHQETIDELRRSVSEKTAQIINTQ----DLEKSHTKLQEEIPVLHEEQELLPNvkEVSETQETMNELEllte 1313
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLEELEAQLEELEskldELAEELAELEEKLEELKEELESLEA--ELEELEAELEELE---- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1314 qsttkdsTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQsKQEQSLNMK 1393
Cdd:TIGR02168 372 -------SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-LKELQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1394 EKDNETTKIVSEMEQFKpkdSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKE------ 1467
Cdd:TIGR02168 444 ELEEELEELQEELERLE---EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNqsglsg 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1468 ---IVAKHLETEEELKVA---------HCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQF 1535
Cdd:TIGR02168 521 ilgVLSELISVDEGYEAAieaalggrlQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1536 NIKQISEVQEK----------------VNELKQFKEHRKAKDSALQSI--------------------ESKMLELTNRLQ 1579
Cdd:TIGR02168 601 LGVAKDLVKFDpklrkalsyllggvlvVDDLDNALELAKKLRPGYRIVtldgdlvrpggvitggsaktNSSILERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1580 ESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAkmkesqekeyqflkmtavnETQEKMCEIEHLKEQFETQKLN 1659
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK-------------------ELEELSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1660 LENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDK 1739
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1740 LRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVS----EMEQLKKQIKDQSLTLSKLEI 1815
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEallnERASLEEALALLRSELEELSE 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1816 ENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTAR-MLSKEHKETVDKLREKI 1894
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRLKRLENKI 981
|
..
gi 2217348656 1895 SE 1896
Cdd:TIGR02168 982 KE 983
|
|
| Microtub_bd |
pfam16796 |
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ... |
19-143 |
1.11e-19 |
|
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.
Pssm-ID: 465274 [Multi-domain] Cd Length: 144 Bit Score: 87.66 E-value: 1.11e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 19 REESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAApIIDSAIQGYNGTIFAYGQTASGKTYTMmg 98
Cdd:pfam16796 29 RPELLSEAQIDYPDETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQ-LVQSCLDGYNVCIFAYGQTGSGSNDGM-- 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2217348656 99 sedhlgvIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLL 143
Cdd:pfam16796 106 -------IPRAREQIFRFISSLkKGWKYTIELQFVEIYNESSQDLL 144
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1332-1977 |
4.15e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.12 E-value: 4.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1332 RLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQeqslnmkekdNETTKIVSEMEQFKp 1411
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL----------YALANEISRLEQQK- 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1412 kdsalLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEE 1491
Cdd:TIGR02168 305 -----QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1492 TINELRVNLSEKETEISTIQKQ-------LEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSAL 1564
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEierlearLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1565 QSIESkmlELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQ---------------EKEYQ 1629
Cdd:TIGR02168 460 EEALE---ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgilgvlselisvDEGYE 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1630 ---------FLKMTAVNETQEKMCEIEHLKEQfETQKLNLENIETENIRLTQILH-ENLEEMRSVTKERDDLRSVEETLK 1699
Cdd:TIGR02168 537 aaieaalggRLQAVVVENLNAAKKAIAFLKQN-ELGRVTFLPLDSIKGTEIQGNDrEILKNIEGFLGVAKDLVKFDPKLR 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1700 VERDQLKENLR--ETITRDLKIQEELRIAHMHLKEQQETIDKlRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEH 1777
Cdd:TIGR02168 616 KALSYLLGGVLvvDDLDNALELAKKLRPGYRIVTLDGDLVRP-GGVITGGSAKTNSSILERRREIEELEEKIEELEEKIA 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1778 ----QLITLKKDVNETQKKVS-------------------------EMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENL 1828
Cdd:TIGR02168 695 elekALAELRKELEELEEELEqlrkeleelsrqisalrkdlarleaEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1829 EEMKSVMKERDNLRRVEETLKLERDQLKESLQETKAR-----------DLEIQQELKTARMLSKEHKETV---DKLREKI 1894
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllneeaanlRERLESLERRIAATERRLEDLEeqiEELSEDI 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1895 SEKTIQISDIQKDLDKSKDELQKKQDRQNhQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHyecLNRLSLD 1974
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERA-SLEEALALLRSELEELSEELRELESKRSELRRELEELREK---LAQLELR 930
|
...
gi 2217348656 1975 LEK 1977
Cdd:TIGR02168 931 LEG 933
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
496-1362 |
6.78e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 94.35 E-value: 6.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 496 IESELNSLRADYdnLVLDYEQLRTEKEEMELKLKEKNDldEFEALERKTkkdQEMQLIHEISNLKNLVKHAEVynQDLEN 575
Cdd:TIGR02168 218 LKAELRELELAL--LVLRLEELREELEELQEELKEAEE--ELEELTAEL---QELEEKLEELRLEVSELEEEI--EELQK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 576 ELSSKVELLREKEDQIKKLQEyidsqKLENIKMDLSYSLESIEDPKQMKQTLfDAETVALDAKRESafLRSENLELKEKM 655
Cdd:TIGR02168 289 ELYALANEISRLEQQKQILRE-----RLANLERQLEELEAQLEELESKLDEL-AEELAELEEKLEE--LKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 656 KELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITkltslidgkvpkdllcnlELEGKITDLQKELNKEVEE 735
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE------------------RLEARLERLEDRRERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 736 NEALREEvILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLleeigktKDDLATTQSNYKST 815
Cdd:TIGR02168 423 IEELLKK-LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA-------ERELAQLQARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 816 DQEFQNFktlhMDFEQKYKMVLEENERMNQeIVNLSKEAQKFDSSLG-ALKTELSYKTQELQEKTREVQERlnEMEQLKE 894
Cdd:TIGR02168 495 ERLQENL----EGFSEGVKALLKNQSGLSG-ILGVLSELISVDEGYEaAIEAALGGRLQAVVVENLNAAKK--AIAFLKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 895 QLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTvnmnidtqEQLRNALESLK 974
Cdd:TIGR02168 568 NELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV--------DDLDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 975 Q--HQETINTLKSKI--------SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQ-QR 1043
Cdd:TIGR02168 640 KlrPGYRIVTLDGDLvrpggvitGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQlRK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1044 KIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLA 1123
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1124 EVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKI----NEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSIT 1199
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANLRERLESLERRIaateRRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1200 KERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRrsvsektAQIINTQDlekshtKLQ 1279
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE-------VRIDNLQE------RLS 946
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1280 EEIPVLHEEQELLPNVKEvSETQETMNELELLTEQsttkdsttLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKE 1359
Cdd:TIGR02168 947 EEYSLTLEEAEALENKIE-DDEEEARRRLKRLENK--------IKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKE 1017
|
...
gi 2217348656 1360 ALE 1362
Cdd:TIGR02168 1018 TLE 1020
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
542-1374 |
2.25e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.81 E-value: 2.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 542 RKTKKDQEMQLIHEISNLKNLvkhaevynQDLENELSSKVELLREKEDQIKKLQEYidSQKLENIKMDLSY--------S 613
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRL--------EDILNELERQLKSLERQAEKAERYKEL--KAELRELELALLVlrleelreE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 614 LESIEDPKQMKQTLFDAETVALDAKRES-AFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQS 692
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKlEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 693 AFNEITKLTSLIDgkvpkDLLCNL-ELEGKITDLQKELNKEVEENEALREEV-ILLSELKSLPSEVERLRKEIQDKSEEL 770
Cdd:TIGR02168 321 LEAQLEELESKLD-----ELAEELaELEEKLEELKEELESLEAELEELEAELeELESRLEELEEQLETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 771 HIITSEKDKLFSEVVHKESRVQGLLEEIG-----KTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQ 845
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEellkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 846 EIVNLSKEAQKFDSSLGALKTELsyktQELQEKTREVQERLNEMEQLKeQLENRDSTLQTVERE-------------KTL 912
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQ----ENLEGFSEGVKALLKNQSGLS-GILGVLSELISVDEGyeaaieaalggrlQAV 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 913 ITEKLQQTLEEVKTLTQEK---------DDLK-QLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINT 982
Cdd:TIGR02168 551 VVENLNAAKKAIAFLKQNElgrvtflplDSIKgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 983 LKSKIseEVSRNLHMEENTGETKDEFQQK---MVGIDKKQDLEAKNTQTLTADVKdNEIIEQQRKIFSLIQEKNELQQML 1059
Cdd:TIGR02168 631 LDNAL--ELAKKLRPGYRIVTLDGDLVRPggvITGGSAKTNSSILERRREIEELE-EKIEELEEKIAELEKALAELRKEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1060 ESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEK 1139
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1140 QQQLLNVQEEMSEMQKKI----NEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETE 1215
Cdd:TIGR02168 788 EAQIEQLKEELKALREALdelrAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1216 RDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQD-LEKSHTKLQEEIPVLHEEQELLPN 1294
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREkLAQLELRLEGLEVRIDNLQERLSE 947
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1295 vkEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRE 1374
Cdd:TIGR02168 948 --EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1063-1917 |
2.83e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 92.44 E-value: 2.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1063 IAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRlaEVEEKLKEKsqqlQEKQQQ 1142
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY--EGYELLKEK----EALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1143 LLNVQEEMSEMQKkinEIENLKNELKNKELTLEHMETERLELAQKLNENYEEvksitkERKVLKELQKSFETERDHLRGY 1222
Cdd:TIGR02169 239 KEAIERQLASLEE---ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE------EQLRVKEKIGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1223 IREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQiintqdleksHTKLQEEIPVLHEEQELLpnvkeVSETQ 1302
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR----------RDKLTEEYAELKEELEDL-----RAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1303 etmnelELLTEQSTTKDSTTLARIEMERLrlnekfqesQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQES 1382
Cdd:TIGR02169 375 ------EVDKEFAETRDELKDYREKLEKL---------KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1383 QSKqeqslnMKEKDNETTKIVSEMEQFKPK----DSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSES 1458
Cdd:TIGR02169 440 EEE------KEDKALEIKKQEWKLEQLAADlskyEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1459 DQLKENIKEIV-------------AKHLET-----------EEELKVAHCC--LKEQEET------INELRVNLSEKETe 1506
Cdd:TIGR02169 514 EVLKASIQGVHgtvaqlgsvgeryATAIEVaagnrlnnvvvEDDAVAKEAIelLKRRKAGratflpLNKMRDERRDLSI- 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1507 istiqKQLEAINDKLQNKIQeiYEKEEQFNIKQISEVQEKVNELKQFKEHrkAKDSALQSIESKMLE------------- 1573
Cdd:TIGR02169 593 -----LSEDGVIGFAVDLVE--FDPKYEPAFKYVFGDTLVVEDIEAARRL--MGKYRMVTLEGELFEksgamtggsrapr 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1574 -LTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKeyqflkmtavneTQEKMCEIEHLKEQ 1652
Cdd:TIGR02169 664 gGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK------------IGEIEKEIEQLEQE 731
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1653 FETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRdlKIQEELRiahmhlkE 1732
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP--EIQAELS-------K 802
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1733 QQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSK 1812
Cdd:TIGR02169 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1813 lEIENLnlaQKLHENLEEMKSVMKERdnlrrvEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKEtvdklre 1892
Cdd:TIGR02169 883 -RLGDL---KKERDELEAQLRELERK------IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE------- 945
|
890 900
....*....|....*....|....*
gi 2217348656 1893 kISEKTIQISDIQKDLDKSKDELQK 1917
Cdd:TIGR02169 946 -IPEEELSLEDVQAELQRVEEEIRA 969
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
880-1707 |
7.55e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 91.28 E-value: 7.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 880 REVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMN 959
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 960 IDTQEQLRNALESLKQHQETINTLKSKISEEV-SRNLHMEENTGETKDEFQQKMVGIDKK-QDLEAK--NTQTLTADVKD 1035
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLeEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAEiaSLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1036 N--EIIEQQRKIFSLI----QEKNELQQMLESVIAEKEQLKTDLKE--NIEMTIENQ-----EELRLLGDELKKQQEIVA 1102
Cdd:TIGR02169 316 EleDAEERLAKLEAEIdkllAEIEELEREIEEERKRRDKLTEEYAElkEELEDLRAEleevdKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1103 QEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIE-----------NLKNELKNKE 1171
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEwkleqlaadlsKYEQELYDLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1172 LTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREI------EATGLQTKEELKIAHIHLK 1245
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvgerYATAIEVAAGNRLNNVVVE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1246 EH---QETIDEL-RRSVSEKTAQIIN-----TQDLEKSHTK--LQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQ 1314
Cdd:TIGR02169 556 DDavaKEAIELLkRRKAGRATFLPLNkmrdeRRDLSILSEDgvIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1315 ------------------STTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETL 1376
Cdd:TIGR02169 636 mgkyrmvtlegelfeksgAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1377 AKIQESQSKQEQSLNMKEKDNEttkivsEMEQFKPKDSAllrieiemlgLSKRLQESHDEMKSVAKEKDDLQRlqevlqs 1456
Cdd:TIGR02169 716 RKIGEIEKEIEQLEQEEEKLKE------RLEELEEDLSS----------LEQEIENVKSELKELEARIEELEE------- 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1457 ESDQLKENIKEIVAKHLETEEELKVAHccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEqfn 1536
Cdd:TIGR02169 773 DLHKLEEALNDLEARLSHSRIPEIQAE--LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE--- 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1537 ikQISEVQEKVNELKQFKEhrkAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEI 1616
Cdd:TIGR02169 848 --QIKSIEKEIENLNGKKE---ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1617 VAKM--KESQEKEYQFLKMTAVNETQEKMCEiehlkeqfETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSV 1694
Cdd:TIGR02169 923 KAKLeaLEEELSEIEDPKGEDEEIPEEELSL--------EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEK 994
|
890
....*....|...
gi 2217348656 1695 EETLKVERDQLKE 1707
Cdd:TIGR02169 995 RAKLEEERKAILE 1007
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
715-1536 |
7.66e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.27 E-value: 7.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 715 NLELEGKITDLQKELNKEVEENEALreevILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGL 794
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELA----LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 795 LEEIGKTkddlattqsnykstDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELS---YK 871
Cdd:TIGR02168 280 EEEIEEL--------------QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAeleEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 872 TQELQEKTREVQERLNEMEQLKEQLENRDSTLQT-VEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKS 950
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEELESRLEELEEqLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 951 DIHDTVNMNIDTQ----EQLRNALESLKQHQETINTLKSKISEEVSRNlhmEENTGETKDEFQQKMVGIDKKQDLEAkNT 1026
Cdd:TIGR02168 426 LLKKLEEAELKELqaelEELEEELEELQEELERLEEALEELREELEEA---EQALDAAERELAQLQARLDSLERLQE-NL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1027 QTLTADVKdnEIIEQQRKI-------FSLIQEKNELQQMLESVIAEKEQLKTD------------LKEN-------IEMT 1080
Cdd:TIGR02168 502 EGFSEGVK--ALLKNQSGLsgilgvlSELISVDEGYEAAIEAALGGRLQAVVVenlnaakkaiafLKQNelgrvtfLPLD 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1081 IENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT----------CDRLAEVEEKLKEKSQQLQEKQQQLLNV---- 1146
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvVDDLDNALELAKKLRPGYRIVTLDGDLVrpgg 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1147 ------QEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKE-----------RKVLKELQ 1209
Cdd:TIGR02168 660 vitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEleelsrqisalRKDLARLE 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1210 KSFET---ERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVsekTAQIINTQDLEKSHTKLQEEIPVLH 1286
Cdd:TIGR02168 740 AEVEQleeRIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI---EQLKEELKALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1287 EEQELLPNVKEVSETQETMNELELLTEQSTTKD-STTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKH 1365
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEElSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1366 DQLKEHIRETLAKIQESQSKqeqslnMKEKDNETTKIVSEMEqfkpkdsallRIEIEMLGLSKRLQESH-DEMKSVAKEK 1444
Cdd:TIGR02168 897 EELSEELRELESKRSELRRE------LEELREKLAQLELRLE----------GLEVRIDNLQERLSEEYsLTLEEAEALE 960
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1445 DDLQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNK 1524
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGPVNLAAIEE-------YEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
890
....*....|...
gi 2217348656 1525 IQEIYEK-EEQFN 1536
Cdd:TIGR02168 1034 FKDTFDQvNENFQ 1046
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
871-1622 |
1.07e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.50 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 871 KTQELQEKTREVQERL--NEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL 948
Cdd:TIGR02168 214 RYKELKAELRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 949 KSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKiSEEVSRNLHMEEntgETKDEFQQKMVGIDKKQDLEAKNTQT 1028
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESK-LDELAEELAELE---EKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1029 L--TADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKtdlkENIEMTIENQEEL--RLLGDELKKQQEIVAQE 1104
Cdd:TIGR02168 370 LesRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE----DRRERLQQEIEELlkKLEEAELKELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1105 KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENL----KNELKNKE-------LT 1173
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegvKALLKNQSglsgilgVL 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1174 LEHMETER-----LELAQKLNENYEEVKSITKERKVLkELQKSFETERDHL----RGYIREIEATGLQTKEELKIAHIHL 1244
Cdd:TIGR02168 526 SELISVDEgyeaaIEAALGGRLQAVVVENLNAAKKAI-AFLKQNELGRVTFlpldSIKGTEIQGNDREILKNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1245 KEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIP----------------------------VLHEEQELLPNVK 1296
Cdd:TIGR02168 605 KDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPgyrivtldgdlvrpggvitggsaktnssILERRREIEELEE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1297 EVSETQETMNELE-----LLTEQSTTKDSTTLARIEMERL------------RLNEKFQESQEEIKSLTKERDNLKTIKE 1359
Cdd:TIGR02168 685 KIEELEEKIAELEkalaeLRKELEELEEELEQLRKELEELsrqisalrkdlaRLEAEVEQLEERIAQLSKELTELEAEIE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1360 ALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQ-----FKPKDSALLRIEIEMLGLSKRLQESH 1434
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTllneeAANLRERLESLERRIAATERRLEDLE 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1435 DEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQL 1514
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1515 EAINDKLQNKIQEIYEKEEQFNIKQISEVQEkvnelkqFKEHRKAKDSALQSIESKMLELTNRLQE-------SQEEIQI 1587
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEE-------AEALENKIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEE 997
|
810 820 830
....*....|....*....|....*....|....*
gi 2217348656 1588 MIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKE 1622
Cdd:TIGR02168 998 LKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1152-1980 |
2.34e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.35 E-value: 2.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1152 EMQKKINEIENLKNELKNKeltLEHMETERlELAQKLNENYEEVKSItkERKVLKELQKSFETERDHLRGYIREIEatgl 1231
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQ---LKSLERQA-EKAERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAE---- 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1232 qtkEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPvlHEEQELLPNVKEVSETQETMNELELL 1311
Cdd:TIGR02168 253 ---EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE--QQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1312 TEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEqsln 1391
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE---- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1392 mkekdnettkivsemeqfkpkdsallRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRlqEVLQSESDQLKENIKEIVAK 1471
Cdd:TIGR02168 404 --------------------------RLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1472 HLETEEElkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQF-NIKQISEVQEKVNEL 1550
Cdd:TIGR02168 456 LERLEEA-------LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLkNQSGLSGILGVLSEL 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1551 KQF-KEHRKAKDSALQSIeskMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKES------ 1623
Cdd:TIGR02168 529 ISVdEGYEAAIEAALGGR---LQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGflgvak 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1624 -------------------------------QEKEYQFLKM--------------------TAVNETQEKMCEIEHLKEQ 1652
Cdd:TIGR02168 606 dlvkfdpklrkalsyllggvlvvddldnaleLAKKLRPGYRivtldgdlvrpggvitggsaKTNSSILERRREIEELEEK 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1653 FETQKLNLENIETENIRLtqilhenLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKE 1732
Cdd:TIGR02168 686 IEELEEKIAELEKALAEL-------RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1733 QQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQsltLSK 1812
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR---IAA 835
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1813 LEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLRE 1892
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1893 KISEKTIQISDIQKDLDKSKDELQKKQDR---------QNHQVKPEKRLLS-DGQQHLTESLREKCSRI----------- 1951
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGLEVRIDNLQERlseeysltlEEAEALENKIEDDeEEARRRLKRLENKIKELgpvnlaaieey 995
|
890 900
....*....|....*....|....*....
gi 2217348656 1952 KELLKRYSEMDDHYECLNRLSLDLEKEIE 1980
Cdd:TIGR02168 996 EELKERYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1190-1963 |
4.64e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 88.59 E-value: 4.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1190 ENYEEVKSITKErkVLKELQKsFETERDHLRGYireieaTGLQTKEELKIAHIHLKEhqetIDELRRSVSEKTAQIintQ 1269
Cdd:TIGR02169 184 ENIERLDLIIDE--KRQQLER-LRREREKAERY------QALLKEKREYEGYELLKE----KEALERQKEAIERQL---A 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1270 DLEKSHTKLQEEIPVLHEE-QELLPNVKEVSETQETMNELELLTEQsttkdsTTLARIEMERLRLNEKFQESQEEIKSLT 1348
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRlEEIEQLLEELNKKIKDLGEEEQLRVK------EKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1349 KERDNLKTIKEALEVKHDQLKEHIRETlaKIQESQSKQEqslnMKEKDNETTKIVSEMEQfkpKDSALLRIEIEMLGLSK 1428
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEE--RKRRDKLTEE----YAELKEELEDLRAELEE---VDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1429 RLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEIS 1508
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1509 TIQKQLEAINDKLQNKIQEIYEKEEQfnikqiseVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQ-- 1586
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRELAEAEAQ--------ARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEva 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1587 -------IMIKEKEEMKRVQEALQieRDQLKENTKEIVAKMKeSQEKEYQFLKMTAVNETQEKMCEIEhlkEQFET---- 1655
Cdd:TIGR02169 545 agnrlnnVVVEDDAVAKEAIELLK--RRKAGRATFLPLNKMR-DERRDLSILSEDGVIGFAVDLVEFD---PKYEPafky 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1656 ---QKLNLENIETE-----NIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKEnLRETITrdlKIQEELRIAH 1727
Cdd:TIGR02169 619 vfgDTLVVEDIEAArrlmgKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQR-LRERLE---GLKRELSSLQ 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1728 MHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKdvnETQKKVSEMEQLKKQIKDQS 1807
Cdd:TIGR02169 695 SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ---EIENVKSELKELEARIEELE 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1808 LTLSKLEIENLNLAQKL-HENLEEMKSVMKE-RDNLRRVEETL-----KLERDQLKESLQETKARDLEIQQELKTARMls 1880
Cdd:TIGR02169 772 EDLHKLEEALNDLEARLsHSRIPEIQAELSKlEEEVSRIEARLreieqKLNRLTLEKEYLEKEIQELQEQRIDLKEQI-- 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1881 KEHKETVDKLREKISEKTIQISDIQ---KDLDKSKDELQKKQDRqnhqVKPEKRLLSDGQQHLTESLREKCSRIKELLKR 1957
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELEEELEELEaalRDLESRLGDLKKERDE----LEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
....*.
gi 2217348656 1958 YSEMDD 1963
Cdd:TIGR02169 926 LEALEE 931
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
646-1468 |
1.00e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 87.43 E-value: 1.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 646 SENLELKEKMKELATTYKQMENDIQLYQ-----SQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKvpkdllcNLELEg 720
Cdd:TIGR02169 197 RQQLERLRREREKAERYQALLKEKREYEgyellKEKEALERQKEAIERQLASLEEELEKLTEEISEL-------EKRLE- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 721 KITDLQKELNKEVEEnEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGK 800
Cdd:TIGR02169 269 EIEQLLEELNKKIKD-LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 801 TKDDLATTQSNYKSTDQEFqnfktlhMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTR 880
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEEL-------EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 881 EVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHD---TVN 957
Cdd:TIGR02169 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEaeaQAR 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 958 MNIDTQEQLRNALESLKQHQETI-NTLKSKISEEVSRNLHMEENTGetkdefqQKMVGIDKKQDLEAKNTQTLTADVKDN 1036
Cdd:TIGR02169 501 ASEERVRGGRAVEEVLKASIQGVhGTVAQLGSVGERYATAIEVAAG-------NRLNNVVVEDDAVAKEAIELLKRRKAG 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1037 EI-------IEQQRKIFSLIQEKNELQQMLESVIAEKEQLK--------TDLKENIEMTIENQEELRLL---GDELKKQQ 1098
Cdd:TIGR02169 574 RAtflplnkMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdTLVVEDIEAARRLMGKYRMVtleGELFEKSG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1099 EIV------AQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENlknelknkel 1172
Cdd:TIGR02169 654 AMTggsrapRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK---------- 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1173 tlehmetERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL-----KIAHIHLKEH 1247
Cdd:TIGR02169 724 -------EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALndleaRLSHSRIPEI 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1248 QETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMN--ELELLTEQSTTKDStTLAR 1325
Cdd:TIGR02169 797 QAELSKLEEEVSRIEARL---REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIekEIENLNGKKEELEE-ELEE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1326 IEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSE 1405
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS 952
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 1406 MEQFKPKdsaLLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEI 1468
Cdd:TIGR02169 953 LEDVQAE---LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1052-1878 |
1.34e-16 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 87.10 E-value: 1.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1052 KNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRllgdelkkQQEIVAQEKNHAIKKEGE-LSRTCDRLAEVEEKLK 1130
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLR--------QSVIDLQTKLQEMQMERDaMADIRRRESQSQEDLR 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1131 EKSQQLQEKQQQLLNVQEEMseMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSI---------TKE 1201
Cdd:pfam15921 145 NQLQNTVHELEAAKCLKEDM--LEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMstmhfrslgSAI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1202 RKVLKELqksfETERDHLRGYIREIE--ATGLQTKEELKIaHIHLKEHQETIDELrrsVSEKTAQIINTQDLEKSH---- 1275
Cdd:pfam15921 223 SKILREL----DTEISYLKGRIFPVEdqLEALKSESQNKI-ELLLQQHQDRIEQL---ISEHEVEITGLTEKASSArsqa 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1276 TKLQEEIPVLHEE--QELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDN 1353
Cdd:pfam15921 295 NSIQSQLEIIQEQarNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1354 LKtikealevkhDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEME-QFKPKDSALLRIEIEMLGLSKRLQ- 1431
Cdd:pfam15921 375 LD----------DQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRrELDDRNMEVQRLEALLKAMKSECQg 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1432 ESHDEMKSVAKEKDDLQRLQEvLQSESDQLKENIKEIVakhleteEELKVAHCCLKEQEETINELRVNLSEKETEISTIQ 1511
Cdd:pfam15921 445 QMERQMAAIQGKNESLEKVSS-LTAQLESTKEMLRKVV-------EELTAKKMTLESSERTVSDLTASLQEKERAIEATN 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1512 KQLEAINDKLQNKIQEIyekeeqfnikqisevqekvNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE 1591
Cdd:pfam15921 517 AEITKLRSRVDLKLQEL-------------------QHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQL 577
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1592 KEEMKRVQEALQIERDQLKentKEIVAKMKESQekEYQFLKmtavNETQEKMCEIEHLKEQFETQKLNLENIETENIR-L 1670
Cdd:pfam15921 578 VGQHGRTAGAMQVEKAQLE---KEINDRRLELQ--EFKILK----DKKDAKIRELEARVSDLELEKVKLVNAGSERLRaV 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1671 TQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDK 1750
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKV 728
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1751 LSNMQKDLENSNAK---LQEKIQELkanEHQLITLKKdvnetqkkvsEMEQLKKQIKDQSLTLSKLEIENlnlaQKLHEN 1827
Cdd:pfam15921 729 AMGMQKQITAKRGQidaLQSKIQFL---EEAMTNANK----------EKHFLKEEKNKLSQELSTVATEK----NKMAGE 791
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 2217348656 1828 LEEMKSvmKERdnlRRVEETLKLERDQLKESLQETKARDLEIQQELKTARM 1878
Cdd:pfam15921 792 LEVLRS--QER---RLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
964-1832 |
2.78e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 85.89 E-value: 2.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 964 EQLRNALESLKQHQETINTLKSKIsEEVSRNLHMEENTGETKDEFQQKMvgiDKKQDLEAkntqtlTADVKDNEIIEQQR 1043
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLII-DEKRQQLERLRREREKAERYQALL---KEKREYEG------YELLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1044 kifsliqeknelqQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKK-----EGELSRT 1118
Cdd:TIGR02169 240 -------------EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEkigelEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1119 CDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEI----ENLKNELKNKELTLEHMETERLELAQKLNENYEE 1194
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEErkrrDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1195 VKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQ----D 1270
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAadlsK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1271 LEKSHTKLQEEIPVLHEEQELLPnvKEVSETQETMNELEllTEQSTTKDSTTL--ARIE------MERLRLNEKFQESQE 1342
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQ--RELAEAEAQARASE--ERVRGGRAVEEVlkASIQgvhgtvAQLGSVGERYATAIE 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1343 -----EIKSLTKERDNlkTIKEALEVkhdqLKEHI--RET---LAKIQESQSKQEQS---------LNMKEKDNE----- 1398
Cdd:TIGR02169 543 vaagnRLNNVVVEDDA--VAKEAIEL----LKRRKagRATflpLNKMRDERRDLSILsedgvigfaVDLVEFDPKyepaf 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1399 -----TTKIVSEMEQFKPkdsalLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIvakhl 1473
Cdd:TIGR02169 617 kyvfgDTLVVEDIEAARR-----LMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGL----- 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1474 etEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQfnikqisevqekvneLKQF 1553
Cdd:TIGR02169 687 --KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED---------------LSSL 749
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1554 KEHRKAKDSALQSIESKMLELTNRLQESQEEIQiMIKEKEEMKRVQEaLQIERDQLKENTKEIVAKMK--ESQEKEYQFL 1631
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEEDLHKLEEALN-DLEARLSHSRIPE-IQAELSKLEEEVSRIEARLReiEQKLNRLTLE 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1632 KMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSveetlkvERDQLKENLRE 1711
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK-------ERDELEAQLRE 900
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1712 TITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLEN--SNAKLQEKIQELKANEHQLitlkKDVNet 1789
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelSLEDVQAELQRVEEEIRAL----EPVN-- 974
|
890 900 910 920
....*....|....*....|....*....|....*....|...
gi 2217348656 1790 QKKVSEMEQLKKQIKDQSLTLSKLEIENLNLaQKLHENLEEMK 1832
Cdd:TIGR02169 975 MLAIQEYEEVLKRLDELKEKRAKLEEERKAI-LERIEEYEKKK 1016
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1006-1552 |
2.58e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 2.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1006 DEFQQKMVGIDKKQDLEAKNTQTLTADV--KDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIEN 1083
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELaeLEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1084 QEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENL 1163
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1164 KNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRgyiREIEATGLQTKEELKIAHIH 1243
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE---AELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1244 LKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEqsttkdsTTL 1323
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE-------AAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1324 ARIEMERLRLNEkfQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSlnmKEKDNETTKIV 1403
Cdd:COG1196 545 AAALQNIVVEDD--EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL---READARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1404 SEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAH 1483
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348656 1484 CCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQ------ISEVQEKVNELKQ 1552
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEElpeppdLEELERELERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1323-1861 |
3.65e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 3.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1323 LARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQslnmkekdnETTKI 1402
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR---------LEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1403 VSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKva 1482
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE-- 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1483 hcclkEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQfNIKQISEVQEKVNELKQFKEHRKAKDS 1562
Cdd:COG1196 383 -----ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA-LAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1563 ALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQ---------------EKE 1627
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGlrglagavavligveAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1628 YQFLKMTAVNETQEKMCE--------IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLK 1699
Cdd:COG1196 537 EAALEAALAAALQNIVVEddevaaaaIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1700 VERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQL 1779
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1780 ITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESL 1859
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
..
gi 2217348656 1860 QE 1861
Cdd:COG1196 777 EA 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1264-1873 |
4.12e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 82.03 E-value: 4.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1264 QIINTQDLEKSHTKLQEEIPVLHEEQEllpNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFqesqEE 1343
Cdd:PRK03918 153 QILGLDDYENAYKNLGEVIKEIKRRIE---RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL----EK 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1344 IKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSlnmKEKDNETTKIVSEMEQFKPKdsallriEIEM 1423
Cdd:PRK03918 226 LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL---KKEIEELEEKVKELKELKEK-------AEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1424 LGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQ---SESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRvnl 1500
Cdd:PRK03918 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEeriKELEEKEERLEELKKKLKELEKRLEE----LEERHELYEEAK--- 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1501 sEKETEISTIQKQLEAIN-DKLQNKIQEIYEKEEQFNiKQISEVQEKVNELKQFKEHRKAKDSALQSIESKmLELTNRLQ 1579
Cdd:PRK03918 369 -AKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIE-EEISKITARIGELKKEIKELKKAIEELKKAKGK-CPVCGREL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1580 ESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKE-SQEKEYQFLKMTA--VNETQEKMC-----EIEHLKE 1651
Cdd:PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlKKESELIKLKELAeqLKELEEKLKkynleELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1652 QFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITR-DLKIQE--------- 1721
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEElEERLKElepfyneyl 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1722 ELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHqlitlKKDVNETQKKVSEMEQLKK 1801
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY-----EELREEYLELSRELAGLRA 680
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348656 1802 QIKdqslTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQEL 1873
Cdd:PRK03918 681 ELE----ELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1407-2193 |
4.13e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 4.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1407 EQFKPKDSALLRIEIEMLGLskRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccL 1486
Cdd:TIGR02168 213 ERYKELKAELRELELALLVL--RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE-------I 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1487 KEQEETINELRVNLSEKETEISTIQKQLEAINDKLQnKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQS 1566
Cdd:TIGR02168 284 EELQKELYALANEISRLEQQKQILRERLANLERQLE-ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1567 IESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQL---KENTKEIVAKMKESQEKEYQFLKMTAVNETQEkm 1643
Cdd:TIGR02168 363 LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLearLERLEDRRERLQQEIEELLKKLEEAELKELQA-- 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1644 cEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLkenlrETITRDLKIqeel 1723
Cdd:TIGR02168 441 -ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL-----EGFSEGVKA---- 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1724 riahmhLKEQQETIDKLRGIVSEK------------TDKLSNMQKDLENSNAKLQEKIQELKANEHQLITL--KKDVNET 1789
Cdd:TIGR02168 511 ------LLKNQSGLSGILGVLSELisvdegyeaaieAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFlpLDSIKGT 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1790 QKKVSEMEQLKKQikDQSLTLSKLEIENLNLAQKLHENL-------EEMKSVMKERDNLRRVEETLKLERDQLKESLQET 1862
Cdd:TIGR02168 585 EIQGNDREILKNI--EGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVIT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1863 KARDLEIQQELKTARMLsKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKQ------DRQNHQVKPEKRLLSDG 1936
Cdd:TIGR02168 663 GGSAKTNSSILERRREI-EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleelSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1937 QQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKELSMRVKANLSlpyLQTKHIEKLFTANQRCSME 2016
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK---ALREALDELRAELTLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2017 FHRIMKKLKYVlsyvtkikEEQHESINKFEMDFIDEVEKQKELLIKIQHLQQDCDVPSRELRD-LKLNQNMDLHIEEILK 2095
Cdd:TIGR02168 819 AANLRERLESL--------ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESeLEALLNERASLEEALA 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2096 DfSESEFPSIKTEFQQVLSNRKEMTQFLEEwLNTRfdIEKLKNGIQKENDRICQVNNFFNNRIIAIMNESTEFEERSATI 2175
Cdd:TIGR02168 891 L-LRSELEELSEELRELESKRSELRRELEE-LREK--LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDD 966
|
810
....*....|....*...
gi 2217348656 2176 SKEWEQDLKSLKEKNEKL 2193
Cdd:TIGR02168 967 EEEARRRLKRLENKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
717-1280 |
4.23e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 82.03 E-value: 4.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 717 ELEGKITDLQKELNKEVEENEALREeviLLSELKSLPSEVERLRKEIQDKSEELHIITSEK---DKLFSEVVHKESRVQG 793
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKE---KEKELEEVLREINEISSELPELREELEKLEKEVkelEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 794 LLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQ------KYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTE 867
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 868 LSyKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITE-KLQQTLEEVKTLTQEKDDLKQLQESLQIERD 946
Cdd:PRK03918 330 IK-ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERlKKRLTGLTPEKLEKELEELEKAKEEIEEEIS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 947 QLKSDIHDTVNMnidtQEQLRNALESLKQHQETINTLKSKISEEVSRNLhMEENTGETKDEFQQKMVGIDKKQDLEAKnt 1026
Cdd:PRK03918 409 KITARIGELKKE----IKELKKAIEELKKAKGKCPVCGRELTEEHRKEL-LEEYTAELKRIEKELKEIEEKERKLRKE-- 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1027 qtltaDVKDNEIIEQQRKIFSliqekneLQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKN 1106
Cdd:PRK03918 482 -----LRELEKVLKKESELIK-------LKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1107 HAIKKEGELSRTCDRLAEVEEKLKE-KSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELA 1185
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAElLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1186 QKLNENYEEVKSITKERKVLKELQKSF-ETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQ 1264
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYsEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
570
....*....|....*.
gi 2217348656 1265 IINTQDLEKSHTKLQE 1280
Cdd:PRK03918 710 KKELEKLEKALERVEE 725
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1359-1959 |
7.79e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 80.88 E-value: 7.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1359 EALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQ-FKPKDSALLRIEIEMLGLSKRLQEshdeM 1437
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLReINEISSELPELREELEKLEKEVKE----L 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1438 KSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRvnlsEKETEISTIQKQLEAI 1517
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE----LEEKVKELKELK----EKAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1518 NDKLQN--KIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKakdsalqsieskmleltnRLQESQEEIQIMIKEKEEM 1595
Cdd:PRK03918 306 LDELREieKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK------------------ELEKRLEELEERHELYEEA 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1596 KRVQEALQIERDQLKENTKEIVAKMKESQEKEyqflKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIR------ 1669
Cdd:PRK03918 368 KAKKEELERLKKRLTGLTPEKLEKELEELEKA----KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgr 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1670 -LTQilHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLREtITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKT 1748
Cdd:PRK03918 444 eLTE--EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE-LEKVLKKESELIKLKELAEQLKELEEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1749 DKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLA-QKLHEN 1827
Cdd:PRK03918 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERlKELEPF 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1828 LEEMKSVMKERDNLRRVEETLKLERDQLKES---LQETKARDLEIQQELKTARML--SKEHKETVDK----------LRE 1892
Cdd:PRK03918 601 YNEYLELKDAEKELEREEKELKKLEEELDKAfeeLAETEKRLEELRKELEELEKKysEEEYEELREEylelsrelagLRA 680
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348656 1893 KISEKTIQISDIQKDLDKSKDELqKKQDRQNHQVKPEKRLLSDgqqhlTESLREKCSRIKELLKRYS 1959
Cdd:PRK03918 681 ELEELEKRREEIKKTLEKLKEEL-EEREKAKKELEKLEKALER-----VEELREKVKKYKALLKERA 741
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1077-1772 |
7.29e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 7.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1077 IEMTIENQEELRLLGDELKKQQEIVAQEKNHA-----IKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMS 1151
Cdd:COG1196 181 LEATEENLERLEDILGELERQLEPLERQAEKAeryreLKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1152 EMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGL 1231
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1232 QTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIpvLHEEQELLPNVKEVSETQETMNELELL 1311
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1312 TEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLN 1391
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1392 MKEKDNETTKIVSEMEQfKPKDSALLRIEIEMLGLSKRLQEshdemksvAKEKDDLQRLQEVLQSESDQLKENIkeivak 1471
Cdd:COG1196 499 AEADYEGFLEGVKAALL-LAGLRGLAGAVAVLIGVEAAYEA--------ALEAALAAALQNIVVEDDEVAAAAI------ 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1472 hleteEELKvahcclKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELK 1551
Cdd:COG1196 564 -----EYLK------AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1552 QFKEHRKAKDSALQSIESkmLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQfl 1631
Cdd:COG1196 633 EAALRRAVTLAGRLREVT--LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE-- 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1632 kmtaVNETQEKMCEIEHLKEQFETQKLNL-ENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQL-KENL 1709
Cdd:COG1196 709 ----LAEAEEERLEEELEEEALEEQLEAErEELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgPVNL 784
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 1710 RetitrdlkiqeelriAhmhLKEQQEtidklrgiVSEKTDKLSNMQKDLENSNAKLQEKIQEL 1772
Cdd:COG1196 785 L---------------A---IEEYEE--------LEERYDFLSEQREDLEEARETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
832-1381 |
8.78e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 8.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 832 KYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKT 911
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 912 LITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEV 991
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 992 SRNLHMEENTGETKDEFQQKMVGIDK-KQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLK 1070
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERlEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1071 TDLKENIEMTIENQEELRLLGDELKKQQEIVAQE-----KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLN 1145
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFlegvkAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1146 VQEEMSEMQkkinEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIRE 1225
Cdd:COG1196 553 VEDDEVAAA----AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1226 IEAtglqtkEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETM 1305
Cdd:COG1196 629 AAR------LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348656 1306 NELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQE 1381
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1335-1921 |
1.33e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1335 EKFQESQEEIK-----SLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQslnmkekdnETTKIVSEMEQF 1409
Cdd:COG1196 213 ERYRELKEELKeleaeLLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEE---------LRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1410 KPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKvahcclkEQ 1489
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE-------EA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1490 EETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEvQEKVNELKQFKEHRKAKDSALQSIES 1569
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE-EALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1570 KMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHL 1649
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1650 KEQFE--TQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRiah 1727
Cdd:COG1196 516 LAGLRglAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL--- 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1728 mhlkeQQETIDKLRGIVSEKTDKLSNMQKDLENSnakLQEKIQELKANEHQLITLKKDVNETQKKVSEMEqlkkqikDQS 1807
Cdd:COG1196 593 -----ARGAIGAAVDLVASDLREADARYYVLGDT---LLGRTLVAARLEAALRRAVTLAGRLREVTLEGE-------GGS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1808 LTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETV 1887
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570 580 590
....*....|....*....|....*....|....
gi 2217348656 1888 DKLREKISEKTIQISDIQKDLDKSKDELQKKQDR 1921
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1074-1707 |
2.48e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 76.26 E-value: 2.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1074 KENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEM 1153
Cdd:PRK03918 178 IERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1154 QKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEAtgLQT 1233
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE--LEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1234 KEElkiahiHLKEHQETIDELRRSVSEktaqiintqdLEKSHtKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTE 1313
Cdd:PRK03918 336 KEE------RLEELKKKLKELEKRLEE----------LEERH-ELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1314 QSTTkdsttlarIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLakiqesqsKQEQSLNMK 1393
Cdd:PRK03918 399 AKEE--------IEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEL--------LEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1394 EKDNETTKIVSEMEQFKPKdsaLLRIEIEMLGLSK--RLQESHDEMKSVAKEkddlqrLQEVLQSESDQLKENIKEIVAK 1471
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKE---LRELEKVLKKESEliKLKELAEQLKELEEK------LKKYNLEELEKKAEEYEKLKEK 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1472 HLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLqnkiqeiyekeEQFNIKQISEVQEKVNELK 1551
Cdd:PRK03918 534 LIKLKGEIKS----LKKELEKLEELKKKLAELEKKLDELEEELAELLKEL-----------EELGFESVEELEERLKELE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1552 QFKEhrkakdsalqsiesKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFL 1631
Cdd:PRK03918 599 PFYN--------------EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEEL 664
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348656 1632 KmtavNETQEKMCEIEHLKEQFETqklnLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKE 1707
Cdd:PRK03918 665 R----EEYLELSRELAGLRAELEE----LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKK 732
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
964-1550 |
2.91e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 75.87 E-value: 2.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 964 EQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQR 1043
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1044 KIFsliqekNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHaIKKEGELSRTCDRLA 1123
Cdd:PRK03918 238 EEI------EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY-IKLSEFYEEYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1124 EVEEKLkeksqqlQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMET--ERLELAQKLNENYEEVKS---- 1197
Cdd:PRK03918 311 EIEKRL-------SRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEErhELYEEAKAKKEELERLKKrltg 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1198 -----ITKERKVLKELQKSFETERDHLRGYIREIEatglQTKEELKIAHIHLKEHQETIDELRRSVSEK---------TA 1263
Cdd:PRK03918 384 ltpekLEKELEELEKAKEEIEEEISKITARIGELK----KEIKELKKAIEELKKAKGKCPVCGRELTEEhrkelleeyTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1264 QIIN-TQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQE 1342
Cdd:PRK03918 460 ELKRiEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1343 EIKSLTKERDNLKTIK---EALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKekdnettkiVSEMEQFKPKDSALLRI 1419
Cdd:PRK03918 540 EIKSLKKELEKLEELKkklAELEKKLDELEEELAELLKELEELGFESVEELEER---------LKELEPFYNEYLELKDA 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1420 EIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLK-----ENIKEIVAKHLETEEELKVAHCCLKEQEETIN 1494
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRELAGLRAELEELEKRRE 690
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1495 ELRVNLSEKETEISTIQKQLEAIND--KLQNKIQEIYEKEEQFNIKQISEVQEKVNEL 1550
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAKKELEKleKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
512-1265 |
9.21e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.33 E-value: 9.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 512 LDYEQLRTEKEEMELKLKekndLDEFEALERktkkdQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQI 591
Cdd:TIGR02169 211 ERYQALLKEKREYEGYEL----LKEKEALER-----QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 592 KKL--QEYIDSQ-KLENIKMDLSySLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLE------------LKEKMK 656
Cdd:TIGR02169 282 KDLgeEEQLRVKeKIGELEAEIA-SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEreieeerkrrdkLTEEYA 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 657 ELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCN---LELEGKITDLQKELNKEV 733
Cdd:TIGR02169 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSeelADLNAAIAGIEAKINELE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 734 EENEALREEVILLS-ELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEE----------IGKTK 802
Cdd:TIGR02169 441 EEKEDKALEIKKQEwKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERvrggraveevLKASI 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 803 DDLATTQSNYKSTDQEFQnfKTLHMDFEQKYKMVLEENERMNQEIVNLSKE---------------AQKFDSSLGALKTE 867
Cdd:TIGR02169 521 QGVHGTVAQLGSVGERYA--TAIEVAAGNRLNNVVVEDDAVAKEAIELLKRrkagratflplnkmrDERRDLSILSEDGV 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 868 LSYKTQ--ELQEKTREVQER-------LNEMEQLKEQLEN-RDSTL--QTVER----------EKTLITEKLQQtLEEVK 925
Cdd:TIGR02169 599 IGFAVDlvEFDPKYEPAFKYvfgdtlvVEDIEAARRLMGKyRMVTLegELFEKsgamtggsraPRGGILFSRSE-PAELQ 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 926 TLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETK 1005
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1006 DEFQQKMVGIDKKQdLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQL---KTDLKENIEMTIE 1082
Cdd:TIGR02169 758 SELKELEARIEELE-EDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKlnrLTLEKEYLEKEIQ 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1083 NQEELRLLGDELKKqqeivaqeknhAIKKEGELSRTcdRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIEN 1162
Cdd:TIGR02169 837 ELQEQRIDLKEQIK-----------SIEKEIENLNG--KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1163 LKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATG------LQTKEE 1236
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEpvnmlaIQEYEE 983
|
810 820
....*....|....*....|....*....
gi 2217348656 1237 LKIAHIHLKEHQETIDELRRSVSEKTAQI 1265
Cdd:TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1040-1818 |
1.87e-12 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 73.47 E-value: 1.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1040 EQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTC 1119
Cdd:pfam02463 206 AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1120 DRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKIN-----------EIENLKNELKNKELTLEHMETERLELAQKL 1188
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKkaekelkkekeEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1189 NENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDElRRSVSEKTAQIINT 1268
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELE-ILEEEEESIELKQG 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1269 QDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKD--STTLARIEMERLRLNEKFQESQEEIKS 1346
Cdd:pfam02463 445 KLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLeeRSQKESKARSGLKVLLALIKDGVGGRI 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1347 LTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGL 1426
Cdd:pfam02463 525 ISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILN 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1427 SKRLQES------HDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNL 1500
Cdd:pfam02463 605 LAQLDKAtleadeDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEK 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1501 SEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQE 1580
Cdd:pfam02463 685 AESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1581 SQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEhlKEQFETQKLNL 1660
Cdd:pfam02463 765 EKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIK--EEELEELALEL 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1661 ENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKL 1740
Cdd:pfam02463 843 KEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEER 922
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1741 RGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENL 1818
Cdd:pfam02463 923 IKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL 1000
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
649-1210 |
2.21e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 2.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 649 LELKEKMKELattykqmenDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkdllcnlELEGKITDLQKE 728
Cdd:COG1196 216 RELKEELKEL---------EAELLLLKLRELEAELEELEAELEELEAELEELEAELA-----------ELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 729 LNKEVEENEALREEVILLSelkslpSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATT 808
Cdd:COG1196 276 LEELELELEEAQAEEYELL------AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 809 QSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNE 888
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 889 MEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRN 968
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 969 ALESLKqhqetiNTLKSKISEEVSRNLHMEE---------------NTGETKDEFQQKMVGIDKKQDL---------EAK 1024
Cdd:COG1196 510 VKAALL------LAGLRGLAGAVAVLIGVEAayeaaleaalaaalqNIVVEDDEVAAAAIEYLKAAKAgratflpldKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1025 NTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQE 1104
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1105 KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLEL 1184
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590
....*....|....*....|....*....|.
gi 2217348656 1185 AQKLN-----ENYEEVKSITKERKVLKELQK 1210
Cdd:COG1196 744 EEELLeeealEELPEPPDLEELERELERLER 774
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-1131 |
4.40e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 4.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 345 LKRYRKEIMDLKKQLEEVSLETRAQAMEKDQLAQLLEEKDLLQKVQNEKIENLTRMLVTSSSL--TLQQELKAKRKRRvt 422
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisRLEQQKQILRERL-- 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 423 wclgkinkmknsNYADQFNIPTNITTKTHKLSINLLREIDESVCSESDVFSNTLDTLSEIEWNPATKLLNQEN----IES 498
Cdd:TIGR02168 312 ------------ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESrleeLEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 499 ELNSLRADYDNLVLDYEQLRTEKEEMELKLKE-----KNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDL 573
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERledrrERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 574 ENELSSKVELLREKEDQIKKLQEYIDSqklenikmdLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLR---SENLE 650
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQ---------LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlSELIS 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 651 LKEKMKELATTYkqMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELn 730
Cdd:TIGR02168 531 VDEGYEAAIEAA--LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDL- 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 731 keVEENEALReevILLSELKSLPSEVERLRKEIQDKSEELH---IITSEKDKLFSEVV---HKESRVQGLLE---EIGKT 801
Cdd:TIGR02168 608 --VKFDPKLR---KALSYLLGGVLVVDDLDNALELAKKLRPgyrIVTLDGDLVRPGGVitgGSAKTNSSILErrrEIEEL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 802 KDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALktelsykTQELQEKTRE 881
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL-------EERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 882 VQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSdihdtvnmnid 961
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE----------- 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 962 TQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDL--EAKNTQTLTADVKDNEII 1039
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASleEALALLRSELEELSEELR 904
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1040 EQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTienQEELRLLGDELKKQQEivaqeknhaiKKEGELSRTC 1119
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL---SEEYSLTLEEAEALEN----------KIEDDEEEAR 971
|
810
....*....|..
gi 2217348656 1120 DRLAEVEEKLKE 1131
Cdd:TIGR02168 972 RRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
731-1362 |
7.71e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 7.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 731 KEVEEN----EALREEVIllSELKSLPSEVERLRK--EIQDKSEELhiitsEKDKLFSEVVHKESRVQGLLEEIGKTKDD 804
Cdd:COG1196 182 EATEENlerlEDILGELE--RQLEPLERQAEKAERyrELKEELKEL-----EAELLLLKLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 805 LATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQE 884
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 885 RLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQE 964
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 965 QLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLtaDVKDNEIIEQQRK 1044
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL--AELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1045 IFSLIQEKNELQQMLESVIAEKEQLKTDLKEniemtienQEELRLLGDELKKQQEIV----AQEKNHAIKKEGELSRTCD 1120
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLA--------GAVAVLIGVEAAYEAALEaalaAALQNIVVEDDEVAAAAIE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1121 RLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTL-EHMETERLELAQKLNENYEEVKSIT 1199
Cdd:COG1196 565 YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLgDTLLGRTLVAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1200 KERKVLKE---LQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHT 1276
Cdd:COG1196 645 RLREVTLEgegGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1277 KLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERL-RLN----EKFQESQEEIKSLTKER 1351
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgPVNllaiEEYEELEERYDFLSEQR 804
|
650
....*....|.
gi 2217348656 1352 DNLKTIKEALE 1362
Cdd:COG1196 805 EDLEEARETLE 815
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1154-1936 |
2.37e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.78 E-value: 2.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1154 QKKINEIENLKNELKNKELTLEHMETERLELAQKLNE---NYEEVKSITKERKV--LKELQKSFETERDHLRGYIREIEa 1228
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEakkKAEDARKAEEARKAedARKAEEARKAEDAKRVEIARKAE- 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1229 tglqtkEELKIAHIHLKEHQETIDELRRSVSEKTAQiintqDLEKSHTKLQEEIPVLHEEQEllpNVKEVSETQETMNEL 1308
Cdd:PTZ00121 1162 ------DARKAEEARKAEDAKKAEAARKAEEVRKAE-----ELRKAEDARKAEAARKAEEER---KAEEARKAEDAKKAE 1227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1309 ELLTEQSTTKDSTTLARIEMERLRLN-EKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIREtlAKIQESQSKQE 1387
Cdd:PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEERNNEEiRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE--AKKAEEKKKAD 1305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1388 QSLNMKEKDNETTKIVSEMEQFKPKDSALlrieiemlglSKRLQEshdemksvAKEKDDLQRLQEvlQSESDQLKENIKE 1467
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAA----------KKKAEE--------AKKAAEAAKAEA--EAAADEAEAAEEK 1365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1468 IVAKHLETEEELKVAHCCLKEQEETinelrvnlsEKETEISTIQKQLEAINDKLQNKIQEIYEKEEqfnIKQISEVQEKV 1547
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEK---------KKADEAKKKAEEDKKKADELKKAAAAKKKADE---AKKKAEEKKKA 1433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1548 NEL-KQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLK---ENTKEIVAKMKES 1623
Cdd:PTZ00121 1434 DEAkKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKkadEAKKAAEAKKKAD 1513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1624 QEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNlENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERD 1703
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD-ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1704 QLKENLRETITRDLKIQEELRIAhmhlKEQQETIDKLRGIVSEKTdKLSNMQKDLENSNAKLQEKIQELKANEHQLITLK 1783
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKA----EEAKIKAEELKKAEEEKK-KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1784 KDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIEnlnlAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETK 1863
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE----AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 1864 ARDLEIQQELKTARMLSKEHKETVDKLREKISEKTiqiSDIQKDLDKSKDELQKKQDRQNHQVKPEKRLLSDG 1936
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE---AVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEG 1813
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1121-1615 |
2.46e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.68 E-value: 2.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1121 RLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITK 1200
Cdd:PRK02224 214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1201 ER--------------KVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQII 1266
Cdd:PRK02224 294 ERddllaeaglddadaEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1267 NTQ-DLEKSHTK---LQEEIPVLHEEQELLPNVKEVSET-----QETMNEL-ELLTEQSTTKDSTTLARIEMERLRLNEK 1336
Cdd:PRK02224 374 EAReAVEDRREEieeLEEEIEELRERFGDAPVDLGNAEDfleelREERDELrEREAELEATLRTARERVEEAEALLEAGK 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1337 ----------------FQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEhIRETLAKIQESQSKQEQSLNMKEKDNETt 1400
Cdd:PRK02224 454 cpecgqpvegsphvetIEEDRERVEELEAELEDLEEEVEEVEERLERAED-LVEAEDRIERLEERREDLEELIAERRET- 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1401 kIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLkENIKEIVAKHLETEEELk 1480
Cdd:PRK02224 532 -IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEI- 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1481 vahcclkeqeETINELRVNLSEKETEistiqkqleaINDKLQNKIQEIYEKEEQFNIKQISEVQEKvnelkqfkehRKAK 1560
Cdd:PRK02224 609 ----------ERLREKREALAELNDE----------RRERLAEKRERKRELEAEFDEARIEEARED----------KERA 658
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 2217348656 1561 DSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMkrvqEALQIERDQLkENTKE 1615
Cdd:PRK02224 659 EEYLEQVEEKLDELREERDDLQAEIGAVENELEEL----EELRERREAL-ENRVE 708
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
582-1375 |
2.90e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 2.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 582 ELLREKED---QIKKLQEYIDSqkLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESaflrsENLELKEKMKEL 658
Cdd:TIGR02169 227 ELLKEKEAlerQKEAIERQLAS--LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-----EQLRVKEKIGEL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 659 attykqmENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkdllcnlELEGKITDLQKELNKEVEENEA 738
Cdd:TIGR02169 300 -------EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE-----------ELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 739 LREEV-ILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQ 817
Cdd:TIGR02169 362 LKEELeDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 818 EFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLE 897
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 898 NRDST---LQTVEREKTLITE-----KLQQTLEEVKTLTQEKDDL---------------KQLQESLQIERDQLKSDIHD 954
Cdd:TIGR02169 522 GVHGTvaqLGSVGERYATAIEvaagnRLNNVVVEDDAVAKEAIELlkrrkagratflplnKMRDERRDLSILSEDGVIGF 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 955 TVNMnIDTQEQLRNALESLKQHQETINTLKSkiSEEVSRNLHMEENTGETKDEfQQKMVGIDKKQDLEAKNTQTLTAdvk 1034
Cdd:TIGR02169 602 AVDL-VEFDPKYEPAFKYVFGDTLVVEDIEA--ARRLMGKYRMVTLEGELFEK-SGAMTGGSRAPRGGILFSRSEPA--- 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1035 dnEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGE 1114
Cdd:TIGR02169 675 --ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1115 LSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEE--MSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENY 1192
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1193 EEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTK---EELKIAHIHLK----EHQETIDELRRSVSEKTAQI 1265
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalRDLESRLGDLKkerdELEAQLRELERKIEELEAQI 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1266 intQDLEKSHTKLQEEIPVLHEE-QELLPNVKEVSETQETMNELELLTE--QSTTKDSTTLARIEMerlRLNEKFQESQE 1342
Cdd:TIGR02169 913 ---EKKRKRLSELKAKLEALEEElSEIEDPKGEDEEIPEEELSLEDVQAelQRVEEEIRALEPVNM---LAIQEYEEVLK 986
|
810 820 830
....*....|....*....|....*....|...
gi 2217348656 1343 EIKSLTKERDNLKTIKEALEVKHDQLKEHIRET 1375
Cdd:TIGR02169 987 RLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
828-1412 |
3.26e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.32 E-value: 3.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 828 DFEQKYKMVLEENERMNQEIVNLskeaQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVE 907
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERL----EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 908 REKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSdihdtvnmnidtQEQLRNALESLKQHQETINTLKSKI 987
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE------------LEEKVKELKELKEKAEEYIKLSEFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 988 SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLtadvkdnEIIEQQRKIFSLIQEKNELQQMLESVIAEKE 1067
Cdd:PRK03918 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK-------KKLKELEKRLEELEERHELYEEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1068 QLKTdlkeniEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKE---------KSQQLQE 1138
Cdd:PRK03918 376 RLKK------RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1139 KQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEhMETERLELAQKLNENYEEVKSITKERKV--LKELQKSFEtER 1216
Cdd:PRK03918 450 RKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE-KVLKKESELIKLKELAEQLKELEEKLKKynLEELEKKAE-EY 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1217 DHLRGYIREIEATGLQTKEELKIAHiHLKEHQETIDELRRSVSEKTAQIINT------QDLEKSHTKLQEEIPVLHEEQE 1290
Cdd:PRK03918 528 EKLKEKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEEELAELLKEleelgfESVEELEERLKELEPFYNEYLE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1291 LLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQE-SQEEIKSLTKERDNLKTIKEALEVKHDQLK 1369
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELE 686
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 2217348656 1370 EHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPK 1412
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREK 729
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
660-1366 |
4.15e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.51 E-value: 4.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 660 TTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDG--KVPKDLLCNLELEG-KITDLQKELNKEVEEN 736
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKIleQQIKDLNDKLKKNKdKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 737 EALREEVILL-SELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKST 815
Cdd:TIGR04523 113 KNDKEQKNKLeVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 816 DQEFQNFKTLHMDFEQKykmvLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQ 895
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKK----IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 896 LENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDdlkqlqeslQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQ 975
Cdd:TIGR04523 269 LSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE---------QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 976 HQETINTLKSKI----SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEaKNTQTLTADVKDNEIIEQQR--KIFSLI 1049
Cdd:TIGR04523 340 LNEQISQLKKELtnseSENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE-SQINDLESKIQNQEKLNQQKdeQIKKLQ 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1050 QEKNELQQMLESVIAEKEQLKTDLK-------------ENIEMTIENQEE-LRLLGDELKKQQEIVAQEKNHAIKKEGEL 1115
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKdltnqdsvkeliiKNLDNTRESLETqLKVLSRSINKIKQNLEQKQKELKSKEKEL 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1116 SRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNkELTLEHMETERLELAQKLNENYEEV 1195
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDF-ELKKENLEKEIDEKNKEIEELKQTQ 577
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1196 KSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSH 1275
Cdd:TIGR04523 578 KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEI 657
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1276 TKLQEEIpvLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTlariEMERLRLNEKFQESQEEIKSLTKERDNLK 1355
Cdd:TIGR04523 658 RNKWPEI--IKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIR----IKDLPKLEEKYKEIEKELKKLDEFSKELE 731
|
730
....*....|.
gi 2217348656 1356 TIKEALEVKHD 1366
Cdd:TIGR04523 732 NIIKNFNKKFD 742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1112-1707 |
7.01e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 7.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1112 EGELSRTCDRLAEVE----------EKLK---------------------------------EKSQQLQEKQQQLLNVQE 1148
Cdd:COG1196 178 ERKLEATEENLERLEdilgelerqlEPLErqaekaeryrelkeelkeleaellllklreleaELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1149 EMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEA 1228
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1229 TGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIpvLHEEQELLPNVKEVSETQETMNEL 1308
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1309 ELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQ 1388
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1389 SLNMKEKDNETTKIVSEMEQfKPKDSALLRIEIEMLG------------LSKRLQESHDEMKSVAKEKDDL---QRLQEV 1453
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALL-LAGLRGLAGAVAVLIGveaayeaaleaaLAAALQNIVVEDDEVAAAAIEYlkaAKAGRA 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1454 LQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEE 1533
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1534 QFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEiqimiKEKEEMKRVQEALQIERDQLKENT 1613
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE-----ERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1614 KEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLtqilhenLEEMRSVTKERDDLRS 1693
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVNLLA-------IEEYEELEERYDFLSE 802
|
650
....*....|....
gi 2217348656 1694 VEETLKVERDQLKE 1707
Cdd:COG1196 803 QREDLEEARETLEE 816
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
726-1659 |
1.25e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 67.38 E-value: 1.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 726 QKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKdKLFSEVVHKESRVQgllEEIGKTKDDL 805
Cdd:TIGR00606 158 QEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMEL-KYLKQYKEKACEIR---DQITSKEAQL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 806 ATTQSNYKSTDQEFQNFKTLhmdfeqkykmvLEENERMNQEIVNLSKEAQKFDSSlgalKTELSYKTQELQEKTREVQER 885
Cdd:TIGR00606 234 ESSREIVKSYENELDPLKNR-----------LKEIEHNLSKIMKLDNEIKALKSR----KKQMEKDNSELELKMEKVFQG 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 886 LNEmeQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDL--KQLQESLQIERDQLKSDIHDTVNMNIDTQ 963
Cdd:TIGR00606 299 TDE--QLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELlvEQGRLQLQADRHQEHIRARDSLIQSLATR 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 964 EQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLtadvkDNEIIEQQR 1043
Cdd:TIGR00606 377 LELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI-----ELKKEILEK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1044 KIFSLIQEKNELQQMLESV--IAEKEQLKTDLKENIEMTIENQEELRLLGDE--LKKQQEIVAQEKNHAIKKEGELSRTC 1119
Cdd:TIGR00606 452 KQEELKFVIKELQQLEGSSdrILELDQELRKAERELSKAEKNSLTETLKKEVksLQNEKADLDRKLRKLDQEMEQLNHHT 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1120 DRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSIT 1199
Cdd:TIGR00606 532 TTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHIN 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1200 KERKVLKELQKSFETerdhlrgyiREIEATGLQTkEELKIAhiHLKEHQETIDELRRSVSEKTAqiINTQDLEKSHTKLQ 1279
Cdd:TIGR00606 612 NELESKEEQLSSYED---------KLFDVCGSQD-EESDLE--RLKEEIEKSSKQRAMLAGATA--VYSQFITQLTDENQ 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1280 EEIPVLHEEQELLPNVKEVSETQETM--------NELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKER 1351
Cdd:TIGR00606 678 SCCPVCQRVFQTEAELQEFISDLQSKlrlapdklKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVN 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1352 DNLKTIKEALEVKHDQLKE-HIRETLAKIQESQSKQEQSLNMKEKDNEtTKIVSEMEQFKPKDSALLRIEiemlgLSKRL 1430
Cdd:TIGR00606 758 RDIQRLKNDIEEQETLLGTiMPEEESAKVCLTDVTIMERFQMELKDVE-RKIAQQAAKLQGSDLDRTVQQ-----VNQEK 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1431 QESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTI 1510
Cdd:TIGR00606 832 QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQD 911
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1511 QKQLEAINDKLQNKIQEIYEKEEQFNIKQIsEVQEKVNELKQFKEHRK--------AKDSALQSIESKMLELTNRLQESQ 1582
Cdd:TIGR00606 912 SPLETFLEKDQQEKEELISSKETSNKKAQD-KVNDIKEKVKNIHGYMKdienkiqdGKDDYLKQKETELNTVNAQLEECE 990
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348656 1583 EEIQIMIKEKEEMKRVQEALQIERDQLKEN--TKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLN 1659
Cdd:TIGR00606 991 KHQEKINEDMRLMRQDIDTQKIQERWLQDNltLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRN 1069
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
650-1832 |
1.69e-10 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 67.38 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 650 ELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKltsLIDGKVPKDLLcNLELEGKITDLQK-- 727
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLE---IDDEIIYINKL-KLELKEKIKNISDkn 616
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 728 -------ELNKEVEENEALREEVILLSELKsLPSEVERLRKEIQD-KSEELHIITSEKDKLFSEVvhkESRVQGLLEEIG 799
Cdd:TIGR01612 617 eyikkaiDLKKIIENNNAYIDELAKISPYQ-VPEHLKNKDKIYSTiKSELSKIYEDDIDALYNEL---SSIVKENAIDNT 692
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 800 KTKDDLATTQSNYKSTDQEFQNFKT----LHM-DFEQKYKMVLEENERMNQEIVN-LSKEAQKFDSSLGALKTELSYKTQ 873
Cdd:TIGR01612 693 EDKAKLDDLKSKIDKEYDKIQNMETatveLHLsNIENKKNELLDIIVEIKKHIHGeINKDLNKILEDFKNKEKELSNKIN 772
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 874 ELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKtliTEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIH 953
Cdd:TIGR01612 773 DYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDA---KQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVD 849
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 954 DTVNMNIDTQEQLRNALESLKqhqETINTLKSKISEEVSRNlhMEENTGETKDEFQQKMVGIDKkqdlEAKNTQTLTadv 1033
Cdd:TIGR01612 850 KFINFENNCKEKIDSEHEQFA---ELTNKIKAEISDDKLND--YEKKFNDSKSLINEINKSIEE----EYQNINTLK--- 917
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1034 KDNEIIEQQRKIFSLIQEKNELQQMLESVIaeKEQLKTDLKEN-IEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKE 1112
Cdd:TIGR01612 918 KVDEYIKICENTKESIEKFHNKQNILKEIL--NKNIDTIKESNlIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKN 995
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1113 GELSRTCDRLAEVEEKLKEKSQQLQ--EKQQQLLNVQEEMSEMQKKINEIE--------NLKNELKNK-ELTLEHMETER 1181
Cdd:TIGR01612 996 NELIKYFNDLKANLGKNKENMLYHQfdEKEKATNDIEQKIEDANKNIPNIEiaihtsiyNIIDEIEKEiGKNIELLNKEI 1075
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1182 LELAQKLNENYEEVKSITKE---RKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL----KIAHIHLKEHQETIDEL 1254
Cdd:TIGR01612 1076 LEEAEINITNFNEIKEKLKHynfDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALeeikKKSENYIDEIKAQINDL 1155
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1255 RRsVSEKTAQIINTQDLEKSH----TKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLT-EQSTTKDSTTLARIEME 1329
Cdd:TIGR01612 1156 ED-VADKAISNDDPEEIEKKIenivTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINlSYGKNLGKLFLEKIDEE 1234
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1330 R------LRLNEKFQESQEEIKSLTKERDNLKTIK-------EALEVKHDQLKEH-------------IRETLAKIQESQ 1383
Cdd:TIGR01612 1235 KkksehmIKAMEAYIEDLDEIKEKSPEIENEMGIEmdikaemETFNISHDDDKDHhiiskkhdenisdIREKSLKIIEDF 1314
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1384 SKQEQSLNMKEKDN----ETTKIVSEMEQFKPKDSALLRIeiemLGLSKrLQESHDEMKSVAKEKDDLQRLQEVLQSESD 1459
Cdd:TIGR01612 1315 SEESDINDIKKELQknllDAQKHNSDINLYLNEIANIYNI----LKLNK-IKKIIDEVKEYTKEIEENNKNIKDELDKSE 1389
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1460 QLKENIKE-IVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKL----------QNKIQEI 1528
Cdd:TIGR01612 1390 KLIKKIKDdINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVlllfkniemaDNKSQHI 1469
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1529 YEKEEQ-------FNIKQISEVQEKVNELKQ---------------FKEHRKAKDSALQSIESkmLELTNRLQESQEEIQ 1586
Cdd:TIGR01612 1470 LKIKKDnatndhdFNINELKEHIDKSKGCKDeadknakaieknkelFEQYKKDVTELLNKYSA--LAIKNKFAKTKKDSE 1547
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1587 IMIKEKEEMKRV----------------QEALQIERDQLKEN--TKEIVAKMKESQEKEYQFLKMTAV-NETQEKMCEIE 1647
Cdd:TIGR01612 1548 IIIKEIKDAHKKfileaekseqkikeikKEKFRIEDDAAKNDksNKAAIDIQLSLENFENKFLKISDIkKKINDCLKETE 1627
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1648 HLKEQFETQKLNLENIE-TENIRLTQILHENLEEMRSVTK-------ERDDLRSVEETLKVERDQLKENLRETITRdlKI 1719
Cdd:TIGR01612 1628 SIEKKISSFSIDSQDTElKENGDNLNSLQEFLESLKDQKKniedkkkELDELDSEIEKIEIDVDQHKKNYEIGIIE--KI 1705
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1720 QEELRIAHMHLKEQQETIDKL--RGIVSEKTDKLSNMqkdleNSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEME 1797
Cdd:TIGR01612 1706 KEIAIANKEEIESIKELIEPTieNLISSFNTNDLEGI-----DPNEKLEEYNTEIGDIYEEFIELYNIIAGCLETVSKEP 1780
|
1290 1300 1310
....*....|....*....|....*....|....*
gi 2217348656 1798 QLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMK 1832
Cdd:TIGR01612 1781 ITYDEIKNTRINAQNEFLKIIEIEKKSKSYLDDIE 1815
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1244-1957 |
2.24e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 2.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1244 LKEHQETIDELRRSVSEKTAQIintqdlekshTKLQEEIPVLHEEQELLPNVKEVsETQETMNELELLTEQSTTKDSTtL 1323
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQL----------ERLRREREKAERYQALLKEKREY-EGYELLKEKEALERQKEAIERQ-L 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1324 ARIEMERLRLNEKFQESQEEIKSLTKERDNL-KTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQS-LNMKEKDNETTK 1401
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKeRELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1402 IVSEMEqfkpkdsallRIEIEMLGLSKRLQEshdemksVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKV 1481
Cdd:TIGR02169 327 LEAEID----------KLLAEIEELEREIEE-------ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1482 AHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQiSEVQEKVNELKQFKEHRKAKD 1561
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA-LEIKKQEWKLEQLAADLSKYE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1562 SALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKE--SQEKEYQF-LKMTAVNE 1638
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQlgSVGERYATaIEVAAGNR 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1639 TQEKMCEIEhlkeqfETQKLNLENIETENI-RLTQIlheNLEEMRSvtKERDDLRSVEETLK------VERDQLKENLRE 1711
Cdd:TIGR02169 549 LNNVVVEDD------AVAKEAIELLKRRKAgRATFL---PLNKMRD--ERRDLSILSEDGVIgfavdlVEFDPKYEPAFK 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1712 TITRDLKIQEELRIAHMHLKEQQetIDKLRGIVSEKTDKL---SNMQKDLENSNAKLQEKIQELKaneHQLITLKKDVNE 1788
Cdd:TIGR02169 618 YVFGDTLVVEDIEAARRLMGKYR--MVTLEGELFEKSGAMtggSRAPRGGILFSRSEPAELQRLR---ERLEGLKRELSS 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1789 TQKKVSEMEQLKKQikdqsltlskleienlnLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLE 1868
Cdd:TIGR02169 693 LQSELRRIENRLDE-----------------LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1869 IQQELKTARMLSKEHKETVDKLREKI-----SEKTIQISDIQKDLDKSKDELQKKQDRQNH------QVKPEKRLLSDGQ 1937
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALndleaRLSHSRIPEIQAELSKLEEEVSRIEARLREieqklnRLTLEKEYLEKEI 835
|
730 740
....*....|....*....|
gi 2217348656 1938 QHLTESLREKCSRIKELLKR 1957
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKE 855
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1441-1918 |
3.23e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.83 E-value: 3.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1441 AKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVnlseketeistiqkqLEAINDK 1520
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET---------------LEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1521 LQNKIQEIYEKEEQFNiKQISEVQEKVNELKQFKEHRKAK----DSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMK 1596
Cdd:PRK02224 263 LRETIAETEREREELA-EEVRDLRERLEELEEERDDLLAEagldDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1597 RVQEALQIERDQLKENTKEIVAKMKESqEKEYQflkmTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQiLHE 1676
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAEL-ESELE----EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED-FLE 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1677 NLEEMRSVTKERddLRSVEETLKVERDQLKENLR--------------------ETITRDLKIQEELRIAHMHLKEQQET 1736
Cdd:PRK02224 416 ELREERDELRER--EAELEATLRTARERVEEAEAlleagkcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEVEE 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1737 ----IDKLRGIVsEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNE-----------TQKKVSEMEQLKK 1801
Cdd:PRK02224 494 veerLERAEDLV-EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleaeaeekreaAAEAEEEAEEARE 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1802 QIK--DQSLTLSKLEIENLNlaqKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARM- 1878
Cdd:PRK02224 573 EVAelNSKLAELKERIESLE---RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIe 649
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 2217348656 1879 LSKEHKETVDKLREKISEKTiqisdiqKDLDKSKDELQKK 1918
Cdd:PRK02224 650 EAREDKERAEEYLEQVEEKL-------DELREERDDLQAE 682
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1474-1802 |
3.46e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 3.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1474 ETEEELKVAhcclkeqEEtiNELRVN--LSEKETEISTIQKQLE------AINDKLQNKIQEIYEKEEQFNIKQISEVQE 1545
Cdd:COG1196 176 EAERKLEAT-------EE--NLERLEdiLGELERQLEPLERQAEkaeryrELKEELKELEAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1546 KVNELKqfkEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE----KEEMKRVQEALQIERDQLKENTKEIVAKMK 1621
Cdd:COG1196 247 ELEELE---AELEELEAELAELEAELEELRLELEELELELEEAQAEeyelLAELARLEQDIARLEERRRELEERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1622 ESQEKEYQFLKMTAVNETQEKmcEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE 1701
Cdd:COG1196 324 ELAELEEELEELEEELEELEE--ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1702 RDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLIT 1781
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340
....*....|....*....|.
gi 2217348656 1782 LKKDVNETQKKVSEMEQLKKQ 1802
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEAD 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1687-1966 |
3.64e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 3.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1687 ERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLEnsnaKLQ 1766
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA----RLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1767 EKIQELKANEHQLITlkkdvnETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEE 1846
Cdd:COG1196 309 ERRRELEERLEELEE------ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1847 TLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQNHQV 1926
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2217348656 1927 KPEKRLLS--DGQQHLTESLREKCSRIKELLKRYSEMDDHYE 1966
Cdd:COG1196 463 ELLAELLEeaALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
963-1628 |
6.65e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.99 E-value: 6.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 963 QEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQ 1042
Cdd:TIGR00618 166 KELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1043 RKIFSLIQEKNELQQMLESVIAEKEQLKTDLKEniemtIENQEELRllgdELKKQQEIVAQEKNHAIKKEGELSRTCDRL 1122
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAV-----LEETQERI----NRARKAAPLAAHIKAVTQIEQQAQRIHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1123 AEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQK-----KINEIENLKNELKNKELTLEHMETERL-ELAQKLNENYEEVK 1196
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsqeIHIRDAHEVATSIREISCQQHTLTQHIhTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1197 SITKERKVLKELQKSFETE---RDHLRGYIREIEATGLQTKEELKIAHIHL-KEHQETI------DELRRSVSEKTAQII 1266
Cdd:TIGR00618 397 SLCKELDILQREQATIDTRtsaFRDLQGQLAHAKKQQELQQRYAELCAAAItCTAQCEKlekihlQESAQSLKEREQQLQ 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1267 NTQDLEKSHTK----------LQEEIPVLHEEQELLPNVKEV-----------------------SETQETMNELELLTE 1313
Cdd:TIGR00618 477 TKEQIHLQETRkkavvlarllELQEEPCPLCGSCIHPNPARQdidnpgpltrrmqrgeqtyaqleTSEEDVYHQLTSERK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1314 QsTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMK 1393
Cdd:TIGR00618 557 Q-RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1394 EKDNETTKIVSEMEQF-------KPKDSALLRIEIEMLGLSKR---LQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKE 1463
Cdd:TIGR00618 636 QCSQELALKLTALHALqltltqeRVREHALSIRVLPKELLASRqlaLQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1464 NIKEIVakhlETEEELKVAHCCLKEQEETINELRVNLSE------KETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNI 1537
Cdd:TIGR00618 716 YDREFN----EIENASSSLGSDLAAREDALNQSLKELMHqartvlKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFN 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1538 KQISEVQEKVNELKQfkEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIV 1617
Cdd:TIGR00618 792 RLREEDTHLLKTLEA--EIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
730
....*....|.
gi 2217348656 1618 AKMKESQEKEY 1628
Cdd:TIGR00618 870 KIIQLSDKLNG 880
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1151-1898 |
8.48e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.27 E-value: 8.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1151 SEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIeatg 1230
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKI---- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1231 lqtKEELKIAHIHLKEHQETIDELRRSVSEKTAQIIntqDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELEL 1310
Cdd:TIGR04523 109 ---NSEIKNDKEQKNKLEVELNKLEKQKKENKKNID---KFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1311 LTEQSTTKDsttlarIEMERLRLNEKF---QESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQE 1387
Cdd:TIGR04523 183 LNIQKNIDK------IKNKLLKLELLLsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1388 QSLNMKEKDNEttkivsemeQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDdlQRLQEVLQSESDQLKENIKE 1467
Cdd:TIGR04523 257 QLKDEQNKIKK---------QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE--QDWNKELKSELKNQEKKLEE 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1468 IVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQiSEVQEKV 1547
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE-SKIQNQE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1548 NELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKE 1627
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1628 YQFLKMTAVNETQEKMCEIEHLKEQFETQKLNlENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKverdqlKE 1707
Cdd:TIGR04523 485 EQKQKELKSKEKELKKLNEEKKELEEKVKDLT-KKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK------KE 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1708 NLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVN 1787
Cdd:TIGR04523 558 NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIK 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1788 ETQKKVSE-MEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKErDNLRRVEETLKLERDQLKESLQEtkaRD 1866
Cdd:TIGR04523 638 SKKNKLKQeVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKE-LSLHYKKYITRMIRIKDLPKLEE---KY 713
|
730 740 750
....*....|....*....|....*....|..
gi 2217348656 1867 LEIQQELKTARMLSKEHKETVDKLREKISEKT 1898
Cdd:TIGR04523 714 KEIEKELKKLDEFSKELENIIKNFNKKFDDAF 745
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1424-1627 |
2.06e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.09 E-value: 2.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1424 LGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEK 1503
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1504 ETEISTIQKQLEAINDKLQNKIQEIYEKEEQ------FNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNR 1577
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2217348656 1578 LQESQEEIQIMIKEKEEMKRVQEALQIERDQ-LKENTKEIVAKMKESQEKE 1627
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKlLARLEKELAELAAELAELQ 219
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
921-2196 |
2.32e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 63.53 E-value: 2.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 921 LEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNI--DTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHME 998
Cdd:TIGR01612 499 LMRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDQNIKAKLykEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLE 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 999 EntgETKDEFQQKMVGIDK-----KQDLEAKNTQTLTADvkDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDL 1073
Cdd:TIGR01612 579 K---EIKDLFDKYLEIDDEiiyinKLKLELKEKIKNISD--KNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKN 653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1074 KENIEMTIENQEELRLLGDELKKQQEIvaqeknHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEM 1153
Cdd:TIGR01612 654 KDKIYSTIKSELSKIYEDDIDALYNEL------SSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNI 727
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1154 QKKINEIENLKNELK-------NKEL--TLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIR 1224
Cdd:TIGR01612 728 ENKKNELLDIIVEIKkhihgeiNKDLnkILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDE 807
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1225 EIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHtklQEEIPVLHEEQELLPNVKEVSETQET 1304
Cdd:TIGR01612 808 DAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNC---KEKIDSEHEQFAELTNKIKAEISDDK 884
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1305 MNELELLTEQSTTKDSTTLARIEMERLRLNeKFQESQEEIKSLTKERDNLKTIKEalevKHDQLKEHIRETLAKIQESQS 1384
Cdd:TIGR01612 885 LNDYEKKFNDSKSLINEINKSIEEEYQNIN-TLKKVDEYIKICENTKESIEKFHN----KQNILKEILNKNIDTIKESNL 959
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1385 KQEQSLN-----MKEKDNETTKIVSE--MEQFKPKDSALLRIEIEM---LGLSK------RLQESHDEMKSVAKEKDDLQ 1448
Cdd:TIGR01612 960 IEKSYKDkfdntLIDKINELDKAFKDasLNDYEAKNNELIKYFNDLkanLGKNKenmlyhQFDEKEKATNDIEQKIEDAN 1039
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1449 R----LQEVLQSESDQLKENIKEIVAKHLET--EEELKVAHCCLKEQEETINELRV-NLSE--KETEIstiqKQLEAINd 1519
Cdd:TIGR01612 1040 KnipnIEIAIHTSIYNIIDEIEKEIGKNIELlnKEILEEAEINITNFNEIKEKLKHyNFDDfgKEENI----KYADEIN- 1114
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1520 KLQNKIQEIYEKEEQfNIKQISEVQEK----VNELK-QFKEHRKAKDSALQSIESKMLEltnrlqESQEEIQIMIKEK-- 1592
Cdd:TIGR01612 1115 KIKDDIKNLDQKIDH-HIKALEEIKKKsenyIDEIKaQINDLEDVADKAISNDDPEEIE------KKIENIVTKIDKKkn 1187
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1593 --EEMKRV-QEALQIERDQlkeNTKEIVAKMKESQEKEYQFLKMTAVNETQEKMceiEHLKEQFETQKLNLENIEtenir 1669
Cdd:TIGR01612 1188 iyDEIKKLlNEIAEIEKDK---TSLEEVKGINLSYGKNLGKLFLEKIDEEKKKS---EHMIKAMEAYIEDLDEIK----- 1256
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1670 ltqilhENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEeLRIAHMHLKEQQETIDKLRGIVSEKTD 1749
Cdd:TIGR01612 1257 ------EKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISD-IREKSLKIIEDFSEESDINDIKKELQK 1329
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1750 KLSNMQKDLENSNAKLQEkIQELkANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQsltLSKLEienlNLAQKLHEN-- 1827
Cdd:TIGR01612 1330 NLLDAQKHNSDINLYLNE-IANI-YNILKLNKIKKIIDEVKEYTKEIEENNKNIKDE---LDKSE----KLIKKIKDDin 1400
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1828 LEEMKSVMKERDNLRRVEETLKlerdqlkeSLQETKARDLEIQQELKTARMLSKEHKETVDKLREKI---SEKTIQISDI 1904
Cdd:TIGR01612 1401 LEECKSKIESTLDDKDIDECIK--------KIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIemaDNKSQHILKI 1472
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1905 QK-----DLDKSKDELQKKQDRqnhqvkpekrllSDGQQHLTESLREKCSRIKELLKRYSEmdDHYECLNRLS-LDLEKE 1978
Cdd:TIGR01612 1473 KKdnatnDHDFNINELKEHIDK------------SKGCKDEADKNAKAIEKNKELFEQYKK--DVTELLNKYSaLAIKNK 1538
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1979 IEFQKELSMRVkanlslpylqtkhIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEE--QHESINKFEMDFIDEVEKQ 2056
Cdd:TIGR01612 1539 FAKTKKDSEII-------------IKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDaaKNDKSNKAAIDIQLSLENF 1605
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2057 KELLIKIQHLQQdcdvpsrelrdlKLNQNMDlHIEEILKDFSESEFPSIKTEFQQVLSNRKEMTQFLEEWLNTRFDIEKL 2136
Cdd:TIGR01612 1606 ENKFLKISDIKK------------KINDCLK-ETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDK 1672
|
1290 1300 1310 1320 1330 1340
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2137 KNGIQKENDRICQVNNFFNNRiiaIMNESTEFEERSATISKEWEQDLKSLKEKNEKLFKN 2196
Cdd:TIGR01612 1673 KKELDELDSEIEKIEIDVDQH---KKNYEIGIIEKIKEIAIANKEEIESIKELIEPTIEN 1729
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
515-1213 |
2.37e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.21 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 515 EQLRTEKEEMELKLKEKNDLDEFEALERKTK------KDQEMQLihEISNLKNLVKHAEVYNQDLENELSSKVELLRE-- 586
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSvidlqtKLQEMQM--ERDAMADIRRRESQSQEDLRNQLQNTVHELEAak 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 587 --KEDQIKKLQEYIDSQKleniKMDLSYslESIEdpKQMKQTLFDAETVALDAKRE-----SAFLRSENLELKEKMKELA 659
Cdd:pfam15921 159 clKEDMLEDSNTQIEQLR----KMMLSH--EGVL--QEIRSILVDFEEASGKKIYEhdsmsTMHFRSLGSAISKILRELD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 660 TTYKQMENDIQLYQSQLEA-KKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELnkEVEENEA 738
Cdd:pfam15921 231 TEISYLKGRIFPVEDQLEAlKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQL--EIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 739 LREEVILLSELKSLPSEVERLRKEI-------QDKSEELHI-----------ITSEKDKLFSEVVHKESRVQGLLEEIGK 800
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELreakrmyEDKIEELEKqlvlanselteARTERDQFSQESGNLDDQLQKLLADLHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 801 TKDDLA-TTQSNYKSTDQEFQNFKTLhmdfeqkykmvleenERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKT 879
Cdd:pfam15921 389 REKELSlEKEQNKRLWDRDTGNSITI---------------DHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAI 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 880 REVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSdihdTVNMN 959
Cdd:pfam15921 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS----RVDLK 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 960 IDTQEQLRNALESLKQHQETINTLKSKISE----------EVSRNLHMEENTGETKDEFQQKMVGIDKK---QDLEAKNT 1026
Cdd:pfam15921 530 LQELQHLKNEGDHLRNVQTECEALKLQMAEkdkvieilrqQIENMTQLVGQHGRTAGAMQVEKAQLEKEindRRLELQEF 609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1027 QTLTaDVKDNEIIEQQRKIFSLIQEK-------NELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQE 1099
Cdd:pfam15921 610 KILK-DKKDAKIRELEARVSDLELEKvklvnagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSE 688
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1100 IVAQEKNhaiKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKIN----EIENLKNELKNKELTLE 1175
Cdd:pfam15921 689 EMETTTN---KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDalqsKIQFLEEAMTNANKEKH 765
|
730 740 750
....*....|....*....|....*....|....*...
gi 2217348656 1176 HMETERLELAQKLNENYEEVKSITKERKVLKELQKSFE 1213
Cdd:pfam15921 766 FLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1334-2202 |
2.40e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.07 E-value: 2.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1334 NEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKD 1413
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1414 sallrieiEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETI 1493
Cdd:pfam02463 231 --------YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1494 NELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKdSALQSIESKMLE 1573
Cdd:pfam02463 303 LKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLE-QLEEELLAKKKL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1574 LTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKmceiEHLKEQF 1653
Cdd:pfam02463 382 ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK----EELEKQE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1654 ETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQ 1733
Cdd:pfam02463 458 LKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1734 QETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKL 1813
Cdd:pfam02463 538 VENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1814 EIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQ-----LKESLQETKARDLEIQQELKTARMLS---KEHKE 1885
Cdd:pfam02463 618 DDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLaekseVKASLSELTKELLEIQELQEKAESELakeEILRR 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1886 TVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHY 1965
Cdd:pfam02463 698 QLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELA 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1966 ECLNRLSLDLEKEIEFQKELSMRVKANLSLPYLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKF 2045
Cdd:pfam02463 778 EEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELE 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2046 EMDFIDEVEKQKELLIKIQHLQQDCDVPsRELRDLKLNQNMDLHIEEILKDFSESEFPSIKTEFQQVLSNRKEMTQFLEE 2125
Cdd:pfam02463 858 RLEEEITKEELLQELLLKEEELEEQKLK-DELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEE 936
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2126 WLNTRFDIEKLKNGIQKENDRICQVNNFFNNRIIAIMN---ESTEFEERSATISKEWEQDLKSLKEKNEKLFKNYQTLKT 2202
Cdd:pfam02463 937 PEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKvnlMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETC 1016
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
873-1387 |
5.07e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.98 E-value: 5.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 873 QELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDI 952
Cdd:PRK02224 237 DEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 953 HDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDleakntqtlTAD 1032
Cdd:PRK02224 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE---------EIE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1033 VKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKEnIEMTIENQEElrllgdELKKQQEIVAQEKNHAIKKE 1112
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE-LEATLRTARE------RVEEAEALLEAGKCPECGQP 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1113 GELSRTCDRLAEVEEKLKEksqqlqeKQQQLLNVQEEMSEMQKKINEIEnlknELKNKELTLEHMEtERLELAQKLNENY 1192
Cdd:PRK02224 461 VEGSPHVETIEEDRERVEE-------LEAELEDLEEEVEEVEERLERAE----DLVEAEDRIERLE-ERREDLEELIAER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1193 EEvkSITKERKVLKELQKSFEterdhlrgyirEIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLE 1272
Cdd:PRK02224 529 RE--TIEEKRERAEELRERAA-----------ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1273 KSHTKLQEEIPVLHEEQELLPNVKEVS-ETQETMNEL-ELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKE 1350
Cdd:PRK02224 596 TLLAAIADAEDEIERLREKREALAELNdERRERLAEKrERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREE 675
|
490 500 510
....*....|....*....|....*....|....*..
gi 2217348656 1351 RDNLKTIKEALEVKHDQLKEhIRETLAKIQESQSKQE 1387
Cdd:PRK02224 676 RDDLQAEIGAVENELEELEE-LRERREALENRVEALE 711
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
546-895 |
9.63e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 9.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 546 KDQEMQLIHEISNLKNLVKHAEVYNQDLENELSskvelLREKEDQIKKLQEYIDSQKLENIKMDLSYSLESIEDPKQMKQ 625
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIG-----EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 626 TLfDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMEnDIQLYQSQLEAKKKmqvDLEKELQSAFNEITKLTSLID 705
Cdd:TIGR02169 762 EL-EARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS-KLEEEVSRIEARLR---EIEQKLNRLTLEKEYLEKEIQ 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 706 GKVPKdllcNLELEGKITDLQKE---LNKEVEENEALREEviLLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFS 782
Cdd:TIGR02169 837 ELQEQ----RIDLKEQIKSIEKEienLNGKKEELEEELEE--LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 783 EVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNfktlHMDFEQKYKMVLEENERMNQ-EIVNLsKEAQKFDSSL 861
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE----ELSLEDVQAELQRVEEEIRAlEPVNM-LAIQEYEEVL 985
|
330 340 350
....*....|....*....|....*....|....
gi 2217348656 862 GALKtELSYKTQELQEKTREVQERLNEMEQLKEQ 895
Cdd:TIGR02169 986 KRLD-ELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1210-1936 |
1.21e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 61.01 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1210 KSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEH--------QETIDELRRSVSEKTAQIINTQD----LEKSHTK 1277
Cdd:pfam12128 254 ESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLlrtlddqwKEKRDELNGELSAADAAVAKDRSeleaLEDQHGA 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1278 -LQEEIPVLHEEQELLPNVKevSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKT 1356
Cdd:pfam12128 334 fLDADIETAAADQEQLPSWQ--SELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1357 IKEA-LEVKHDQLKEHIRETLAKIQESQSKQEQSL-NMKEKDNETTKIVSEMEQFKPKDSallrieiemlglskRLQESH 1434
Cdd:pfam12128 412 VAEDdLQALESELREQLEAGKLEFNEEEYRLKSRLgELKLRLNQATATPELLLQLENFDE--------------RIERAR 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1435 DEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINE-LRVNLSEKETEISTIQKQ 1513
Cdd:pfam12128 478 EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHfLRKEAPDWEQSIGKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1514 LEAINDKLQNKIQEIYEKEE------QFNIKQIsEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQi 1587
Cdd:pfam12128 558 ELLHRTDLDPEVWDGSVGGElnlygvKLDLKRI-DVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELE- 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1588 miKEKEEMKRVQEALQIERDQLKE--NTKEIVAKMKESQEKEYQFLKMTAVN--ETQEKMCEIEH--LKEQFETQKLNLE 1661
Cdd:pfam12128 636 --KASREETFARTALKNARLDLRRlfDEKQSEKDKKNKALAERKDSANERLNslEAQLKQLDKKHqaWLEEQKEQKREAR 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1662 nietenirltqilhenleemrsvTKERDDLRSVEETLKVERDQLKENLretitrdLKIQEELRIAHMHLKEQQETIDKLR 1741
Cdd:pfam12128 714 -----------------------TEKQAYWQVVEGALDAQLALLKAAI-------AARRSGAKAELKALETWYKRDLASL 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1742 GIVSEKTDKLSNMQKDLENSNAKLQEKIQELKA-----NEHQLI---TLKKDVNETQKKVSEME-QLKKQIKDQSLTLSK 1812
Cdd:pfam12128 764 GVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyfdwyQETWLQrrpRLATQLSNIERAISELQqQLARLIADTKLRRAK 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1813 LEIE---NLNLAQKLHENLEEMKSVM------KERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEH 1883
Cdd:pfam12128 844 LEMErkaSEKQQVRLSENLRGLRCEMsklatlKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADH 923
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 2217348656 1884 KET-VDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQNHQVKPEKRLLSDG 1936
Cdd:pfam12128 924 SGSgLAETWESLREEDHYQNDKGIRLLDYRKLVPYLEQWFDVRVPQSIMVLREQ 977
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
695-1204 |
1.50e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.44 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 695 NEITKLTSLIDGKVPKDLLCNL-ELEGKITDLQKELnKEVEEN-----EALREEVILLSELKSLPSEVERLRKEIQDKSE 768
Cdd:PRK02224 187 GSLDQLKAQIEEKEEKDLHERLnGLESELAELDEEI-ERYEEQreqarETRDEADEVLEEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 769 ELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLH-------MDFEQKYKMVLEENE 841
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDeelrdrlEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 842 RMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTL 921
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 922 EEVKTLTQekdDLKQLQESLQIERDQLK-------------SDIHDTVNMNIDTQEQLRNALESLKQHQET----INTLK 984
Cdd:PRK02224 426 EREAELEA---TLRTARERVEEAEALLEagkcpecgqpvegSPHVETIEEDRERVEELEAELEDLEEEVEEveerLERAE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 985 S--KISEEVSRNLHMEENTGE-------TKDEFQQKMVGIDK-KQDLEAK-NTQTLTADVKDNEIIEQQRKIFSLIQEKN 1053
Cdd:PRK02224 503 DlvEAEDRIERLEERREDLEEliaerreTIEEKRERAEELRErAAELEAEaEEKREAAAEAEEEAEEAREEVAELNSKLA 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1054 ELQQMLESV--IAEKEQLKTDLKENIEMTIENQEELRLLGDE----LKKQQEIVAQ-----EKNHAIKKEGELSRTCDRL 1122
Cdd:PRK02224 583 ELKERIESLerIRTLLAAIADAEDEIERLREKREALAELNDErrerLAEKRERKREleaefDEARIEEAREDKERAEEYL 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1123 AEVEEKLKEKsqqlqekQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLElAQKLNENYEEVKSITKER 1202
Cdd:PRK02224 663 EQVEEKLDEL-------REERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDE-AEELESMYGDLRAELRQR 734
|
..
gi 2217348656 1203 KV 1204
Cdd:PRK02224 735 NV 736
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
559-1190 |
1.73e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 1.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 559 LKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEY------------------------------IDSQKLENIKM 608
Cdd:TIGR04523 24 YKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNlnkdeekinnsnnkikileqqikdlndklkKNKDKINKLNS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 609 DLSYSLESIEDPKQMKQTLfdaetvaldaKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEK 688
Cdd:TIGR04523 104 DLSKINSEIKNDKEQKNKL----------EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELEN 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 689 ELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSE 768
Cdd:TIGR04523 174 ELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQT 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 769 ELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQN--FKTLHMDFEQKYKMVLEEN------ 840
Cdd:TIGR04523 254 QLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdwNKELKSELKNQEKKLEEIQnqisqn 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 841 ----ERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEK 916
Cdd:TIGR04523 334 nkiiSQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 917 LQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHD---TVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSR 993
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVkelIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 994 NLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADV--KDNEIIEQQRKIFSLIQEKNELQqmLESVIAEKEQLKT 1071
Cdd:TIGR04523 494 KEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKkeKESKISDLEDELNKDDFELKKEN--LEKEIDEKNKEIE 571
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1072 DLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRtcdRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMS 1151
Cdd:TIGR04523 572 ELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEK---ELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
650 660 670
....*....|....*....|....*....|....*....
gi 2217348656 1152 EMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNE 1190
Cdd:TIGR04523 649 QIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLK 687
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1294-2115 |
2.02e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1294 NVKEVSETQETMNELELLTEQSTT---KDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTikEALEVKHDQLKE 1370
Cdd:PTZ00121 1025 NIEKIEELTEYGNNDDVLKEKDIIdedIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRAD--EATEEAFGKAEE 1102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1371 HIRETLAKIQESQSKQEQSlnMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSV----AKEKDD 1446
Cdd:PTZ00121 1103 AKKTETGKAEEARKAEEAK--KKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARkaedAKKAEA 1180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1447 LQRLQEVLQSESDQLKENIKEIVAKHlETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQ 1526
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEDARKAEAAR-KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1527 EIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAkDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIER 1606
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKKA-DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1607 DQLKEntKEIVAKMKESQEKEYQflkmtavnETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRsvtK 1686
Cdd:PTZ00121 1339 EEAKK--AAEAAKAEAEAAADEA--------EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK---K 1405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1687 ERDDLRSVEETlKVERDQLKENLRETitrdlKIQEELRIAHMHLKEQQETIDKlrgivSEKTDKLSNMQKDLENSNA--K 1764
Cdd:PTZ00121 1406 KADELKKAAAA-KKKADEAKKKAEEK-----KKADEAKKKAEEAKKADEAKKK-----AEEAKKAEEAKKKAEEAKKadE 1474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1765 LQEKIQELKANEHqlitLKKDVNETQKKVSEM---EQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSV------- 1834
Cdd:PTZ00121 1475 AKKKAEEAKKADE----AKKKAEEAKKKADEAkkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkkade 1550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1835 MKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDE 1914
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1915 LQKKQDRQNHQVKPEKRllsdGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRlsldlEKEIEFQKELSMRVKANls 1994
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKK----KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK-----AEEDEKKAAEALKKEAE-- 1699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1995 lpylQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEMDFIDEVEKQKellikIQHLQQDCDVPS 2074
Cdd:PTZ00121 1700 ----EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK-----IAHLKKEEEKKA 1770
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 2217348656 2075 RELRDLKlnqnmDLHIEEILKDFSESEFPSIKTEFQQVLSN 2115
Cdd:PTZ00121 1771 EEIRKEK-----EAVIEEELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
519-1421 |
2.51e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 519 TEKEEMELKLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEV--YNQDLENELSSKVELLREKED--QIKKL 594
Cdd:PTZ00121 1090 DEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDArkAEEARKAEDAKRVEIARKAEDarKAEEA 1169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 595 QEYIDSQKLEN----IKMDLSYSLESIEDPKQMKQTL-FDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMEndi 669
Cdd:PTZ00121 1170 RKAEDAKKAEAarkaEEVRKAEELRKAEDARKAEAARkAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE--- 1246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 670 qlyqsqlEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQK-ELNKEVEENEALREEVILLSE 748
Cdd:PTZ00121 1247 -------EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKaEEKKKADEAKKKAEEAKKADE 1319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 749 LKSLPSEVERLRKEIQDKSEElhiitsekDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMD 828
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEE--------AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 829 FEQKYKMVLEENERMNQEIVNLSKEAQKFDSSlgALKTELSYKTQELQEKTREvQERLNEMEQLKEQLENRDSTLQTVER 908
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEA--KKKAEEKKKADEAKKKAEE-AKKADEAKKKAEEAKKAEEAKKKAEE 1468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 909 EKTliTEKLQQTLEEVKtltqEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKIS 988
Cdd:PTZ00121 1469 AKK--ADEAKKKAEEAK----KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 989 EEVSRNLHMEENTGETKDEFQQKMVgiDKKQDLEAKNTQTLTAD----VKDNEIIEQQRKIFSLIQEKNELQQMLESVIA 1064
Cdd:PTZ00121 1543 EEKKKADELKKAEELKKAEEKKKAE--EAKKAEEDKNMALRKAEeakkAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1065 EKEQLKT--DLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQ 1142
Cdd:PTZ00121 1621 KAEELKKaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1143 LLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLnenyEEVKSITKERKVLKELQKSFETERDHLRGY 1222
Cdd:PTZ00121 1701 AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA----EEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1223 IREIEATGLQTKeelkiahihlkehqetiDELRRSVSEKTaqiinTQDLEKSHTKLQE----EIPVLHEEQELlpnvkEV 1298
Cdd:PTZ00121 1777 KEAVIEEELDEE-----------------DEKRRMEVDKK-----IKDIFDNFANIIEggkeGNLVINDSKEM-----ED 1829
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1299 SETQETMNELELLTEQSTTkdsttlarIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEalEVKHDQLKEHIRETLAK 1378
Cdd:PTZ00121 1830 SAIKEVADSKNMQLEEADA--------FEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEE--EIEEADEIEKIDKDDIE 1899
|
890 900 910 920
....*....|....*....|....*....|....*....|...
gi 2217348656 1379 IQESQSkqeqslNMKEKDNETTKIVSEMEQFKPKDSALLRIEI 1421
Cdd:PTZ00121 1900 REIPNN------NMAGKNNDIIDDKLDKDEYIKRDAEETREEI 1936
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1718-1917 |
2.62e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 2.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1718 KIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEME 1797
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1798 QLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKER-DNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTA 1876
Cdd:COG4942 111 RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQaEELRADLAELAALRAELEAERAELEALLAELEEERAAL 190
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2217348656 1877 RMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQK 1917
Cdd:COG4942 191 EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1730-1926 |
4.07e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.92 E-value: 4.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1730 LKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSE-MEQLKKQIKD--- 1805
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEErREELGERARAlyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1806 QSLTLSKLEIenLNLAQKLHENLEEMKSVMKERDNLRRVEETLKlerdQLKESLQETKARDLEIQQELKTARMLSKEHKE 1885
Cdd:COG3883 98 SGGSVSYLDV--LLGSESFSDFLDRLSALSKIADADADLLEELK----ADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2217348656 1886 TVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQNHQV 1926
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAA 212
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
638-1669 |
4.88e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.90 E-value: 4.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 638 KRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQvDLEKELQSAFNEITKLTSLIDGKVPKDllCNLE 717
Cdd:TIGR00606 158 QEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQ-EHQMELKYLKQYKEKACEIRDQITSKE--AQLE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 718 LEGKI-------TDLQKELNKEVEEN-EALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKES 789
Cdd:TIGR00606 235 SSREIvksyeneLDPLKNRLKEIEHNlSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTV 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 790 R--------VQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENErMNQEIVNLSKEA---QKFD 858
Cdd:TIGR00606 315 RekerelvdCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLA-TRLELDGFERGPfseRQIK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 859 SSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQE-----KDD 933
Cdd:TIGR00606 394 NFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQlegssDRI 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 934 LKQLQESLQIERDQLKSDIHDTVnmnidtqEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMV 1013
Cdd:TIGR00606 474 LELDQELRKAERELSKAEKNSLT-------ETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1014 GIDKKQDLEAKNTQTLTADVKDneiieqqrkifslIQEKNELQQMLESVIAEKEQLKtdlkeniemtienqEELRLLGDE 1093
Cdd:TIGR00606 547 KDEQIRKIKSRHSDELTSLLGY-------------FPNKKQLEDWLHSKSKEINQTR--------------DRLAKLNKE 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1094 LKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNvQEEMSEMQKKINEIENLKNELKNKELT 1173
Cdd:TIGR00606 600 LASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKS-SKQRAMLAGATAVYSQFITQLTDENQS 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1174 LEHMETERLELAQKLNENYEEVKSITK----ERKVLKELQKSFETERDHLRGYIrEIEATGLQTKEElkiahiHLKEHQE 1249
Cdd:TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKLRlapdKLKSTESELKKKEKRRDEMLGLA-PGRQSIIDLKEK------EIPELRN 751
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1250 TIDELRRSVSEKtaqiinTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTK-DSTTLARIEM 1328
Cdd:TIGR00606 752 KLQKVNRDIQRL------KNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKlQGSDLDRTVQ 825
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1329 ErlrLNEKFQESQEEIKSLTKERDNLKTIKE-------ALEVKHDQLKEHIRETLAKIQESQSKQEQSLnmkEKDNETTK 1401
Cdd:TIGR00606 826 Q---VNQEKQEKQHELDTVVSKIELNRKLIQdqqeqiqHLKSKTNELKSEKLQIGTNLQRRQQFEEQLV---ELSTEVQS 899
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1402 IVSEMEQFKPKDSALLRIeiemlgLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKv 1481
Cdd:TIGR00606 900 LIREIKDAKEQDSPLETF------LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYL- 972
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1482 ahcclKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQ-NKIQEIYEKEEQFNIKQISEVQEKVNELKQF-KEHRKA 1559
Cdd:TIGR00606 973 -----KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDtQKIQERWLQDNLTLRKRENELKEVEEELKQHlKEMGQM 1047
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1560 KDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERD--QLKENTKEIVAKMKESQE------KEYQFL 1631
Cdd:TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQfrDAEEKYREMMIVMRTTELvnkdldIYYKTL 1127
|
1050 1060 1070
....*....|....*....|....*....|....*...
gi 2217348656 1632 KMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIR 1669
Cdd:TIGR00606 1128 DQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIR 1165
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1454-1978 |
5.12e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.49 E-value: 5.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1454 LQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEE 1533
Cdd:TIGR04523 122 LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1534 QFNI--KQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKrvqealqierDQLKE 1611
Cdd:TIGR04523 202 LLSNlkKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK----------KQLSE 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1612 NTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCE---IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKER 1688
Cdd:TIGR04523 272 KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEL 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1689 DDLRSVEETLKVERDQlKENLRETItrdlkiqeelriahmhLKEQQETIDKLRGIVSEKTDKLSNMQKDlENSNAKLQEK 1768
Cdd:TIGR04523 352 TNSESENSEKQRELEE-KQNEIEKL----------------KKENQSYKQEIKNLESQINDLESKIQNQ-EKLNQQKDEQ 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1769 IQELKANEHQLitlkkdVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETL 1848
Cdd:TIGR04523 414 IKKLQQEKELL------EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1849 KLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQK--------KQD 1920
Cdd:TIGR04523 488 QKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKenlekeidEKN 567
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1921 RQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKE 1978
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
577-1074 |
5.77e-08 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 58.55 E-value: 5.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 577 LSSKVELLREKEDQIKKLQEYIDSQKLENIK---------MDLSYSLESIEDPKQMKQTLfDAETVALDAKRESAFLRSE 647
Cdd:COG5022 805 LLGSRKEYRSYLACIIKLQKTIKREKKLRETeevefslkaEVLIQKFGRSLKAKKRFSLL-KKETIYLQSAQRVELAERQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 648 NLELKEKMKELATTYKQMENDIQLYqsqLEAKKKMQVDLEKELQSAFNEITKLTSLIDG---KVPKDL-LCNLELEGKIT 723
Cdd:COG5022 884 LQELKIDVKSISSLKLVNLELESEI---IELKKSLSSDLIENLEFKTELIARLKKLLNNidlEEGPSIeYVKLPELNKLH 960
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 724 DLQKELNKEVEE-NEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKlfsevvhkesrvqglLEEIGKTK 802
Cdd:COG5022 961 EVESKLKETSEEyEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQ---------------LKELPVEV 1025
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 803 DDLATTQSNYKSTDQEFQNFKTLHmdfEQKYKMVLEENE-RMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTRE 881
Cdd:COG5022 1026 AELQSASKIISSESTELSILKPLQ---KLKGLLLLENNQlQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLE 1102
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 882 VQERLNEMEqlkeqlENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQ--LKSDIHDTVNMN 959
Cdd:COG5022 1103 VTNRNLVKP------ANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEanLEALPSPPPFAA 1176
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 960 IDTQEQLRNALESLKQH--QETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNtqtltaDVKDNE 1037
Cdd:COG5022 1177 LSEKRLYQSALYDEKSKlsSSEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFN------NLNKKF 1250
|
490 500 510
....*....|....*....|....*....|....*..
gi 2217348656 1038 IIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLK 1074
Cdd:COG5022 1251 DTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATIN 1287
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
844-1381 |
1.35e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 844 NQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEE 923
Cdd:TIGR04523 74 NNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 924 VKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRN---ALESLKQHQETINTLKSKISEEVSRNLHMEEN 1000
Cdd:TIGR04523 154 LEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKlelLLSNLKKKIQKNKSLESQISELKKQNNQLKDN 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1001 TGETKDEFQQKMVGIDKKQD--LEAKNTQTLTADV---KDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQ-LKTDLK 1074
Cdd:TIGR04523 234 IEKKQQEINEKTTEISNTQTqlNQLKDEQNKIKKQlseKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdWNKELK 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1075 ENIEmtiENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT-----------CDRLAEVEEKLKEKSQQLQEKQQQL 1143
Cdd:TIGR04523 314 SELK---NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSesensekqrelEEKQNEIEKLKKENQSYKQEIKNLE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1144 LNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYI 1223
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1224 REIEATGLQTKEELKIAHIHLKEHQETIDELrrsvsektaqIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQE 1303
Cdd:TIGR04523 471 KVLSRSINKIKQNLEQKQKELKSKEKELKKL----------NEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1304 TMNELELLTEQSTTKDSttlaRIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQE 1381
Cdd:TIGR04523 541 SDLEDELNKDDFELKKE----NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISS 614
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
494-925 |
1.43e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 494 ENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKE-KNDLDEFEALERktkkdqemQLIHEISNLKNLVKHAEVYNQD 572
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLRKELEELSRQISAlRKDLARLEAEVE--------QLEERIAQLSKELTELEAEIEE 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 573 LENELSSKVELLREKEDQIKKLQEYIDsqklenikmdlsyslesiedpkqmkqtlfdaetvalDAKRESAFLRSENLELK 652
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIE------------------------------------QLKEELKALREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 653 EKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQsafneitkltslidgkvpkdllcnlELEGKITDLQKELNKE 732
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE-------------------------ELSEDIESLAAEIEEL 864
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 733 VEENEALREEVILLSELK-SLPSEVERLRKEIQDKSEELHIItsekdklfsevvhkESRVQGLLEEIGKTKDDLATTQSN 811
Cdd:TIGR02168 865 EELIEELESELEALLNERaSLEEALALLRSELEELSEELREL--------------ESKRSELRRELEELREKLAQLELR 930
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 812 YKSTDQEFQNFKTlhmDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQ 891
Cdd:TIGR02168 931 LEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTA 1007
|
410 420 430
....*....|....*....|....*....|....*
gi 2217348656 892 LKEQL-ENRDSTLQTVEREKTLITEKLQQTLEEVK 925
Cdd:TIGR02168 1008 QKEDLtEAKETLEEAIEEIDREARERFKDTFDQVN 1042
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1437-1900 |
1.65e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1437 MKSVAKEKDDLQRLQ----EVLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQK 1512
Cdd:COG4717 48 LERLEKEADELFKPQgrkpELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1513 QLEAIND-----KLQNKIQEIYEKEEQF--NIKQISEVQEKVNELKQfkEHRKAKDSALQSIESKMLELTNRLQESQEEI 1585
Cdd:COG4717 124 LLQLLPLyqeleALEAELAELPERLEELeeRLEELRELEEELEELEA--ELAELQEELEELLEQLSLATEEELQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1586 QIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEyQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIET 1665
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE-RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1666 ENIRLTQILHENLEEMRSV-TKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIV 1744
Cdd:COG4717 281 LVLGLLALLFLLLAREKASlGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1745 SEKTdklsnmQKDLENSNAKLQEKIQElkANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQ-SLTLSKLEIENL-NLAQ 1822
Cdd:COG4717 361 EELQ------LEELEQEIAALLAEAGV--EDEEELRAALEQAEEYQELKEELEELEEQLEELlGELEELLEALDEeELEE 432
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1823 KLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESlqeTKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQ 1900
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEED---GELAELLQELEELKAELRELAEEWAALKLALELLEEARE 507
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1486-1978 |
1.73e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1486 LKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEqfNIKQISEVQEKVNELKQFKEHRKAKDSALQ 1565
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISS--ELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1566 SIESKMLELTNRLQESQEEIQIMIKEKEEmkrvqealqiERDQLKENTKEIvakmKESQEKEyqflkmtavnetqEKMCE 1645
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKK----------EIEELEEKVKEL----KELKEKA-------------EEYIK 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1646 IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLR--ETITRDLKIQEEL 1723
Cdd:PRK03918 298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElyEEAKAKKEELERL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1724 RIAHM-----HLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKvSEMEQ 1798
Cdd:PRK03918 378 KKRLTgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK-ELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1799 LKKQIKDQSLTLSKLEienlNLAQKLHENLEEMKSVMKERDNLRRVEETLklerDQLKESLQETKARDLEiqqELKTARM 1878
Cdd:PRK03918 457 YTAELKRIEKELKEIE----EKERKLRKELRELEKVLKKESELIKLKELA----EQLKELEEKLKKYNLE---ELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1879 LSKEHKETVDKLREKISEKTIQISDIqKDLDKSKDELQKKQDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRY 1958
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKL-EELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEY 604
|
490 500
....*....|....*....|
gi 2217348656 1959 SEMDDHYECLNRLSLDLEKE 1978
Cdd:PRK03918 605 LELKDAEKELEREEKELKKL 624
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1487-1855 |
2.01e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1487 KEQEETINELRVNLSEKETEISTIQKQLEAIndKLQNKIQEIY-EKEEQFNIKQISEVqekVNELKQFKEHRKAKDSALQ 1565
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSL--ERQAEKAERYkELKAELRELELALL---VLRLEELREELEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1566 SIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQierdqlkentkeivakmkesqeKEYQflkmTAVNETQEKMCE 1645
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ----------------------KELY----ALANEISRLEQQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1646 IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRI 1725
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1726 AHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLEN---SNAKLQEKIQELKANEHQ--LITLKKDVNETQKKVSEMEQLK 1800
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERlqqEIEELLKKLEEAELKELQaeLEELEEELEELQEELERLEEAL 463
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2217348656 1801 KQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQL 1855
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1521-1914 |
2.41e-07 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 56.06 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1521 LQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQE 1600
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1601 ALQIERDQLKENTKEIVAKMKESQEKeyqflKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEE 1680
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEED-----IKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1681 MRSVTKERDDLRSVEEtlkvERDQLKENLRETITRdlkIQEELRIAHMHLKEQQETIDKLRGI-----VSEKTDKLsnMQ 1755
Cdd:pfam07888 187 LRSLSKEFQELRNSLA----QRDTQVLQLQDTITT---LTQKLTTAHRKEAENEALLEELRSLqerlnASERKVEG--LG 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1756 KDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEME---QLKKQIKDQSLTLSKLEIENLNLA-QKLHENLEEm 1831
Cdd:pfam07888 258 EELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRarwAQERETLQQSAEADKDRIEKLSAElQRLEERLQE- 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1832 ksvmkERDNLRRVEETLKLERDQLKESLQETKaRDLeiqQELKTARMLSKEHKEtvdKLREKISEKTIQISDIQKDLDKS 1911
Cdd:pfam07888 337 -----ERMEREKLEVELGREKDCNRVQLSESR-REL---QELKASLRVAQKEKE---QLQAEKQELLEYIRQLEQRLETV 404
|
...
gi 2217348656 1912 KDE 1914
Cdd:pfam07888 405 ADA 407
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1579-1969 |
2.57e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1579 QESQEEIQIMIKEKEEmKRVQEALQIERDQLKENTKEIvaKMKESQEKEYQFLKMTA---VNETQEKMCEIEHLKEQFET 1655
Cdd:PRK02224 186 RGSLDQLKAQIEEKEE-KDLHERLNGLESELAELDEEI--ERYEEQREQARETRDEAdevLEEHEERREELETLEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1656 QKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQE 1735
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1736 TIDKLRGIV-------SEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNET-----------QKKVSEME 1797
Cdd:PRK02224 343 EAESLREDAddleeraEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDApvdlgnaedflEELREERD 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1798 QLKKQIKDQSLTLSKLEiENLNLAQKLHE---------------NLEEMKSVMKERDNLRRVEETLKLERDQLK------ 1856
Cdd:PRK02224 423 ELREREAELEATLRTAR-ERVEEAEALLEagkcpecgqpvegspHVETIEEDRERVEELEAELEDLEEEVEEVEerlera 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1857 ESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQNhQVKPEKRLLSDG 1936
Cdd:PRK02224 502 EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE-EAREEVAELNSK 580
|
410 420 430
....*....|....*....|....*....|...
gi 2217348656 1937 QQHLTESlREKCSRIKELLKRYSEMDDHYECLN 1969
Cdd:PRK02224 581 LAELKER-IESLERIRTLLAAIADAEDEIERLR 612
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1645-1858 |
2.77e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 55.79 E-value: 2.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1645 EIEHLKEQFETQKLNLENIET---ENI-RLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQ 1720
Cdd:PHA02562 189 KIDHIQQQIKTYNKNIEEQRKkngENIaRKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1721 EEL----RIAHMHLKEQQ-----ETIDKLRGIVSEKTDKLSNMQKDLEnsnaKLQEKIQELKANEHQLITLKKDVNETQK 1791
Cdd:PHA02562 269 SKIeqfqKVIKMYEKGGVcptctQQISEGPDRITKIKDKLKELQHSLE----KLDTAIDELEEIMDEFNEQSKKLLELKN 344
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348656 1792 KVSEMEQ----LKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKES 1858
Cdd:PHA02562 345 KISTNKQslitLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDS 415
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
480-973 |
3.10e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 3.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 480 SEIEWNPATKLLNQEN-IESELNSLRADYDNLVLDYEQLRTEKEEMELKLKE-KNDLDEFEALERktkkdqemqlihEIS 557
Cdd:PRK02224 194 AQIEEKEEKDLHERLNgLESELAELDEEIERYEEQREQARETRDEADEVLEEhEERREELETLEA------------EIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 558 NLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQ-----EYIDSQKLENIKMDLSYSLESIEDPKQMKQTLFDAET 632
Cdd:PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaglDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 633 VALDAKRESAF-LRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkD 711
Cdd:PRK02224 342 EEAESLREDADdLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLE-----E 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 712 LLCNL-ELEGKITDLQ---KELNKEVEENEALREE---------------VILLSE----LKSLPSEVERLRKEIQDKSE 768
Cdd:PRK02224 417 LREERdELREREAELEatlRTARERVEEAEALLEAgkcpecgqpvegsphVETIEEdrerVEELEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 769 ELHIITSEKdKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIV 848
Cdd:PRK02224 497 RLERAEDLV-EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 849 NLSKEAQKFDSSLGALKT----------------ELSYKTQELQEKTREVQERLNEMEQLKEQLENR--DSTLQTVEREK 910
Cdd:PRK02224 576 ELNSKLAELKERIESLERirtllaaiadaedeieRLREKREALAELNDERRERLAEKRERKRELEAEfdEARIEEAREDK 655
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348656 911 TLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKS--DIHDTVNMNIDTQEQLRNALESL 973
Cdd:PRK02224 656 ERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEElrERREALENRVEALEALYDEAEEL 720
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
507-1239 |
3.42e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.13 E-value: 3.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 507 YDNLVLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLRE 586
Cdd:pfam02463 228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 587 KEDQIKKLQEyIDSQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQME 666
Cdd:pfam02463 308 RKVDDEEKLK-ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 667 ndiqlyQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILL 746
Cdd:pfam02463 387 ------SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 747 SELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEfqnfKTLH 826
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLG----DLGV 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 827 MDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTV 906
Cdd:pfam02463 537 AVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 907 EREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETIN----- 981
Cdd:pfam02463 617 EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKeeilr 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 982 TLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLES 1061
Cdd:pfam02463 697 RQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKEL 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1062 VIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKS------QQ 1135
Cdd:pfam02463 777 AEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLeklaeeEL 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1136 LQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETE 1215
Cdd:pfam02463 857 ERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEE 936
|
730 740
....*....|....*....|....
gi 2217348656 1216 RDHLRGYIREIEATGLQTKEELKI 1239
Cdd:pfam02463 937 PEELLLEEADEKEKEENNKEEEEE 960
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1223-1805 |
3.47e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.06 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1223 IREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNvkEVSETQ 1302
Cdd:PRK01156 161 INSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMD--DYNNLK 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1303 ETMNELELLTEqsttkdstTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHdqlKEHIRETLAKIQES 1382
Cdd:PRK01156 239 SALNELSSLED--------MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKN---RNYINDYFKYKNDI 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1383 QSKQEQSLNMKEKDNETTKIVSEMEQfkpkdsallrieiemlglskrLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLK 1462
Cdd:PRK01156 308 ENKKQILSNIDAEINKYHAIIKKLSV---------------------LQKDYNDYIKKKSRYDDLNNQILELEGYEMDYN 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1463 ENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQN----------KIQEIYEKE 1532
Cdd:PRK01156 367 SYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSlnqriralreNLDELSRNM 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1533 EQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQ-EALQIERDQLKE 1611
Cdd:PRK01156 447 EMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEiNKSINEYNKIES 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1612 NTKEIVAKMKESQEKEYQFLKMTAVNEtQEKMCEIEHLkEQFETQKLNL----ENIETENIR-----LTQILHENLEEMR 1682
Cdd:PRK01156 527 ARADLEDIKIKINELKDKHDKYEEIKN-RYKSLKLEDL-DSKRTSWLNAlaviSLIDIETNRsrsneIKKQLNDLESRLQ 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1683 SVTKERDDLRSVEETLKVERDQLKENLRETIT--RDLKIQ-EELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLE 1759
Cdd:PRK01156 605 EIEIGFPDDKSYIDKSIREIENEANNLNNKYNeiQENKILiEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK 684
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 1760 NSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSE-------MEQLKKQIKD 1805
Cdd:PRK01156 685 KSRKALDDAKANRARLESTIEILRTRINELSDRINDinetlesMKKIKKAIGD 737
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1105-1828 |
3.66e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 3.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1105 KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELT----------- 1173
Cdd:TIGR04523 25 KNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKnkdkinklnsd 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1174 LEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSF-------ETERDHLRGYIREIEATGLQTKEELKIAHIHLKE 1246
Cdd:TIGR04523 105 LSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFlteikkkEKELEKLNNKYNDLKKQKEELENELNLLEKEKLN 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1247 HQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNvkEVSETQETMNELELLTEQSTTKDSTTLARI 1326
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKD--NIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1327 EMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNmKEKDNETTKIVSEM 1406
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQ-NQISQNNKIISQLN 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1407 EQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCL 1486
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEK 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1487 KEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNkiQEIYEKEEQFNIKQISevqekvNELKQFKEHRKAKDSALQS 1566
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKN--LDNTRESLETQLKVLS------RSINKIKQNLEQKQKELKS 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1567 IESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALqierdqlkenTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEI 1646
Cdd:TIGR04523 494 KEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL----------ESEKKEKESKISDLEDELNKDDFELKKENLEKEI 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1647 EHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIA 1726
Cdd:TIGR04523 564 DEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKL 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1727 HMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQ 1806
Cdd:TIGR04523 644 KQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKL 723
|
730 740
....*....|....*....|..
gi 2217348656 1807 SLTLSKLEIENLNLAQKLHENL 1828
Cdd:TIGR04523 724 DEFSKELENIIKNFNKKFDDAF 745
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
984-1602 |
4.43e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 55.68 E-value: 4.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 984 KSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNElqqMLESVI 1063
Cdd:PRK01156 151 RKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIE---RLSIEY 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1064 AEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKkegelsrtcdrLAEVEEKLKEKSQQLQEKQqql 1143
Cdd:PRK01156 228 NNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNY-----------YKELEERHMKIINDPVYKN--- 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1144 lnvQEEMSEMQKKINEIENLKNELKN--KELTLEHMETERLELAQKLNENYEEVKS----ITKERKVLKE-------LQK 1210
Cdd:PRK01156 294 ---RNYINDYFKYKNDIENKKQILSNidAEINKYHAIIKKLSVLQKDYNDYIKKKSryddLNNQILELEGyemdynsYLK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1211 SFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVsektaqiintQDLEKSHTKLQEEIPVLHEEQE 1290
Cdd:PRK01156 371 SIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKL----------QDISSKVSSLNQRIRALRENLD 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1291 llpnvkEVSETQETMNELELL----TEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEvkhd 1366
Cdd:PRK01156 441 ------ELSRNMEMLNGQSVCpvcgTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLE---- 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1367 qlKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALlrieieMLGLSKRLQESHDEMKSVAKEKDd 1446
Cdd:PRK01156 511 --SEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSL------KLEDLDSKRTSWLNALAVISLID- 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1447 lqrlQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQ 1526
Cdd:PRK01156 582 ----IETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKK 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1527 EIYEKEEQfnIKQISEVQEKVNE-----------LKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIM---IKEK 1592
Cdd:PRK01156 658 QIAEIDSI--IPDLKEITSRINDiednlkksrkaLDDAKANRARLESTIEILRTRINELSDRINDINETLESMkkiKKAI 735
|
650
....*....|
gi 2217348656 1593 EEMKRVQEAL 1602
Cdd:PRK01156 736 GDLKRLREAF 745
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1508-1927 |
7.27e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 7.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1508 STIQKQLEAI-NDKLQNKIQEIY---EKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMleltNRLQESQE 1583
Cdd:COG4717 37 STLLAFIRAMlLERLEKEADELFkpqGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEEL----EELEAELE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1584 EIQIMIKEKEEMKRVQEALQiERDQLKENTKEIVAKMKESQEKeyqflkmtaVNETQEKMCEIEHLKEQFETQKLNLENI 1663
Cdd:COG4717 113 ELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEER---------LEELRELEEELEELEAELAELQEELEEL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1664 ETE-NIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHL------------ 1730
Cdd:COG4717 183 LEQlSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLllliaaallall 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1731 ---KEQQETIDKLRGIV---------------------SEKTDKLSNMQKDLENSNAKLQEKIQELKANE----HQLITL 1782
Cdd:COG4717 263 glgGSLLSLILTIAGVLflvlgllallflllarekaslGKEAEELQALPALEELEEEELEELLAALGLPPdlspEELLEL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1783 KKDVNETQKKVSEMEQLKKQIKDQSLtlsKLEIENLnLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQET 1862
Cdd:COG4717 343 LDRIEELQELLREAEELEEELQLEEL---EQEIAAL-LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGEL 418
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348656 1863 KAR-----DLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKD--LDKSKDELQKKQDRQNHQVK 1927
Cdd:COG4717 419 EELlealdEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDgeLAELLQELEELKAELRELAE 490
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1690-1909 |
7.73e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 54.64 E-value: 7.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1690 DLRSVEETLKVERDQLKENLRETITRDLK---IQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQ 1766
Cdd:PHA02562 161 DISVLSEMDKLNKDKIRELNQQIQTLDMKidhIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELT 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1767 EKIQEL-KANEHQLITLKKDVNETQKKVSEMEQLKK----------------QIKDQSLTLSKLEIENLNLAQKLH---E 1826
Cdd:PHA02562 241 DELLNLvMDIEDPSAALNKLNTAAAKIKSKIEQFQKvikmyekggvcptctqQISEGPDRITKIKDKLKELQHSLEkldT 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1827 NLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQK 1906
Cdd:PHA02562 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400
|
...
gi 2217348656 1907 DLD 1909
Cdd:PHA02562 401 EKY 403
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1333-1912 |
8.50e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 54.52 E-value: 8.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1333 LNEKFQESQEEIKSLTK--------ERDNLKTIKEALEVKHDQLKE--HIRETLAKIQeSQSKQEQSLNMKEKDNETTKI 1402
Cdd:PRK01156 188 LEEKLKSSNLELENIKKqiaddeksHSITLKEIERLSIEYNNAMDDynNLKSALNELS-SLEDMKNRYESEIKTAESDLS 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1403 VSEMEQFKPKDSALLRIEIEmlglSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLkeNIKEIVAKHLETEEELKVA 1482
Cdd:PRK01156 267 MELEKNNYYKELEERHMKII----NDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEI--NKYHAIIKKLSVLQKDYND 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1483 HCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNkiqeiYEKEEQFNIKQISEVqekvneLKQFKEHRKAKDS 1562
Cdd:PRK01156 341 YIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEE-----YSKNIERMSAFISEI------LKIQEIDPDAIKK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1563 ALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQiERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEK 1642
Cdd:PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREI 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1643 MCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSvtkERDDLRSVEETLKVERDQLKENLRETITRDLKIQEE 1722
Cdd:PRK01156 489 EIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARA---DLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDS 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1723 LRIAHMHLKEQQETID--KLRGIVSEKTDKLsnmqKDLENSNAKLQEKIQELKA-NEHQLITLKKDVNETQKKVSEMEQL 1799
Cdd:PRK01156 566 KRTSWLNALAVISLIDieTNRSRSNEIKKQL----NDLESRLQEIEIGFPDDKSyIDKSIREIENEANNLNNKYNEIQEN 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1800 KKQIkdqsltlskleienlnlaQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARdleiqqeLKTARML 1879
Cdd:PRK01156 642 KILI------------------EKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKA-------LDDAKAN 696
|
570 580 590
....*....|....*....|....*....|...
gi 2217348656 1880 SKEHKETVDKLREKISEKTIQISDIQKDLDKSK 1912
Cdd:PRK01156 697 RARLESTIEILRTRINELSDRINDINETLESMK 729
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1288-1534 |
1.08e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1288 EQELLPNVKEVSETQETMNElellTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQ 1367
Cdd:COG4942 26 EAELEQLQQEIAELEKELAA----LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1368 LKEHIRETLAKIQESQSKQEQSLnmkekdnettkivsemeQFKPKDSALLRIEIEMLG-LSKRLQEshdEMKSVAKEKDD 1446
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLAL-----------------LLSPEDFLDAVRRLQYLKyLAPARRE---QAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1447 LQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQ 1526
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEAL-------KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
....*...
gi 2217348656 1527 EIYEKEEQ 1534
Cdd:COG4942 235 EAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
747-952 |
1.13e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 747 SELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLH 826
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 827 MDFEQKYKMVLEENERMNQ----EIVNLSKEAQKFDSSLGALKtelsYKTQELQEKTREVQERLNEMEQLKEQLENRDST 902
Cdd:COG4942 100 EAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLK----YLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2217348656 903 LQTVEREKTLITEKLQQTLEE----VKTLTQEKDDLKQLQESLQIERDQLKSDI 952
Cdd:COG4942 176 LEALLAELEEERAALEALKAErqklLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1159-1708 |
1.31e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1159 EIENLKNELKNKELTLEHMET--ERLELAQKLNENYEEVKSITKERKVLKELQKSF-----ETERDHLRGYIREIEATGL 1231
Cdd:COG4913 226 AADALVEHFDDLERAHEALEDarEQIELLEPIRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1232 QTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINT-----QDLEKSHTKLQE------------EIPVLHEEQELLPN 1294
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQlereiERLERELEERERrrarleallaalGLPLPASAEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1295 VKEVSETQETMNELELLTEQsttkdstTLARIEMERLRLNEKFQESQEEIKSLTKERDNL--------KTIKEALEVKHD 1366
Cdd:COG4913 386 RAEAAALLEALEEELEALEE-------ALAEAEAALRDLRRELRELEAEIASLERRKSNIparllalrDALAEALGLDEA 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1367 QLK---EHIretlakiqesqskqeqslNMKEKDNE-------------TTKIVSEmEQFKpkdsALLRIeIEMLGLSKRL 1430
Cdd:COG4913 459 ELPfvgELI------------------EVRPEEERwrgaiervlggfaLTLLVPP-EHYA----AALRW-VNRLHLRGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1431 --QESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHL-----ETEEELK----------------VAHCC-- 1485
Cdd:COG4913 515 vyERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFdyvcvDSPEELRrhpraitragqvkgngTRHEKdd 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1486 ---LKEQ-------EETINELRVNLSEKETEISTIQKQLEAINDKLQN--KIQEIYEK--EEQFNIKQISEVQEKVNELK 1551
Cdd:COG4913 595 rrrIRSRyvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDAlqERREALQRlaEYSWDEIDVASAEREIAELE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1552 QFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAkmKESQEKEYQFL 1631
Cdd:COG4913 675 AELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED--LARLELRALLE 752
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348656 1632 KMTAVNETQEKMCEI-EHLKEQFETQKLNLENIETeniRLTQILHENLEEMRSVTKE-RDDLRSVEETLKvERDQLKEN 1708
Cdd:COG4913 753 ERFAAALGDAVERELrENLEERIDALRARLNRAEE---ELERAMRAFNREWPAETADlDADLESLPEYLA-LLDRLEED 827
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1225-1813 |
1.32e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.96 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1225 EIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEktAQIINtqdlEKSHTKLQEEIpvlheeQELLPNVKEVSETQET 1304
Cdd:pfam05483 89 KIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQE--LQFEN----EKVSLKLEEEI------QENKDLIKENNATRHL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1305 MNELELLTEQSTTKDSttlaRIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVkhdQLKEHIRETLAKIQESQS 1384
Cdd:pfam05483 157 CNLLKETCARSAEKTK----KYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARL---EMHFKLKEDHEKIQHLEE 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1385 KQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEmlglsKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKEN 1464
Cdd:pfam05483 230 EYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESR-----DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMS 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1465 IKEIVAKHLETEEELKVAH---CCLKEQEET----INELRVNLSEKETEISTIQKQLEAIndkLQNKIQEIYEKEEQFNI 1537
Cdd:pfam05483 305 LQRSMSTQKALEEDLQIATktiCQLTEEKEAqmeeLNKAKAAHSFVVTEFEATTCSLEEL---LRTEQQRLEKNEDQLKI 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1538 KQIsEVQEKVNELKQFKEHRKAKDSALQSIESKMLE-------------LTNRLQESQEEIQIMIKEKE-EMKRVQEALQ 1603
Cdd:pfam05483 382 ITM-ELQKKSSELEEMTKFKNNKEVELEELKKILAEdeklldekkqfekIAEELKGKEQELIFLLQAREkEIHDLEIQLT 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1604 IERDQLKENTKEIVAKMKESQEKEYQFLKMTAVN-----ETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILhENL 1678
Cdd:pfam05483 461 AIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCdklllENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQI-ENL 539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1679 EEMRsvTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDL 1758
Cdd:pfam05483 540 EEKE--MNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQEN 617
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348656 1759 ENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEM-EQLKKQIKDQSLTLSKL 1813
Cdd:pfam05483 618 KALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIiDNYQKEIEDKKISEEKL 673
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
509-1160 |
1.33e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.87 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 509 NLVLDYEQLRTEKEEMELKLKEKNDLDEfealERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKE 588
Cdd:TIGR04523 104 DLSKINSEIKNDKEQKNKLEVELNKLEK----QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLE 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 589 DQIKKLQEYIDSQKLENIKmdLSYSLESIEDPKQMKQTLfdaetvaldaKRESAFLRSENLELKEKMKELATTYKQMEND 668
Cdd:TIGR04523 180 KEKLNIQKNIDKIKNKLLK--LELLLSNLKKKIQKNKSL----------ESQISELKKQNNQLKDNIEKKQQEINEKTTE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 669 IQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEG----KITDLQKELNKEVEENEalREEVI 744
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlnnqKEQDWNKELKSELKNQE--KKLEE 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 745 LLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKT 824
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 825 LHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQ 904
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE 485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 905 TVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQ--ETINT 982
Cdd:TIGR04523 486 QKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENleKEIDE 565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 983 LKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKifSLIQEKNELQQMLESV 1062
Cdd:TIGR04523 566 KNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENE--KLSSIIKNIKSKKNKL 643
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1063 IAEKEQLKTDLKENIEMT---IENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEK 1139
Cdd:TIGR04523 644 KQEVKQIKETIKEIRNKWpeiIKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKL 723
|
650 660
....*....|....*....|.
gi 2217348656 1140 QQQLLNVQEEMSEMQKKINEI 1160
Cdd:TIGR04523 724 DEFSKELENIIKNFNKKFDDA 744
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1645-1877 |
1.55e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1645 EIEHLKEQFETqklnLENIETENIR-------LTQILhENLEEMRSVTKERDDLRSVEETLKVERDQLK----ENLRETI 1713
Cdd:COG4913 226 AADALVEHFDD----LERAHEALEDareqielLEPIR-ELAERYAAARERLAELEYLRAALRLWFAQRRlellEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1714 TRDL-KIQEELRIAHMHLKEQQETIDKLRGIVSE-KTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQK 1791
Cdd:COG4913 301 RAELaRLEAELERLEARLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1792 kvsEMEQLKKQIKDQSLTLSkleienlnlaqklhenlEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQ 1871
Cdd:COG4913 381 ---EFAALRAEAAALLEALE-----------------EELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPA 440
|
....*.
gi 2217348656 1872 ELKTAR 1877
Cdd:COG4913 441 RLLALR 446
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1428-1852 |
1.76e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.62 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1428 KRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEI--VAKHLETEEELKVAHCCLKEQEETINELRV------N 1499
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELeeLREELEKLEKLLQLLPLYQELEALEAELAElperleE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1500 LSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQ 1579
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1580 ESQEEIQImikeKEEMKRVQEALQI------------ERDQLKENTKEIVAKMKESQE----KEYQFLKMTAVNETQEKM 1643
Cdd:COG4717 231 QLENELEA----AALEERLKEARLLlliaaallallgLGGSLLSLILTIAGVLFLVLGllalLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1644 CEIEHLKEQFETQKLN--LENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE--RDQLKENLRETITRDLki 1719
Cdd:COG4717 307 LQALPALEELEEEELEelLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEelEQEIAALLAEAGVEDE-- 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1720 qEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSN-AKLQEKIQELKAnehQLITLKKDVNETQKKVSEMEQ 1798
Cdd:COG4717 385 -EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeEELEEELEELEE---ELEELEEELEELREELAELEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 2217348656 1799 LKKQIKDQSlTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLER 1852
Cdd:COG4717 461 ELEQLEEDG-ELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1431-1946 |
1.89e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.69 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1431 QESHDEMKSVAKEKDDLQRLQEV------LQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKE 1504
Cdd:pfam12128 217 RLNRQQVEHWIRDIQAIAGIMKIrpeftkLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1505 TEIST----IQKQLEAINDKLQNKIQEIYEKEEQFNIKQisevQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQE 1580
Cdd:pfam12128 297 DQWKEkrdeLNGELSAADAAVAKDRSELEALEDQHGAFL----DADIETAAADQEQLPSWQSELENLEERLKALTGKHQD 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1581 SQEEIQIMI-KEKEEMKRVQEALQIERDqlkeNTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFEtqkln 1659
Cdd:pfam12128 373 VTAKYNRRRsKIKEQNNRDIAGIKDKLA----KIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLK----- 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1660 lENIETENIRLTQ--ILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETI 1737
Cdd:pfam12128 444 -SRLGELKLRLNQatATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSAL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1738 DKLRGIVSEKTDKL----SNMQKDLENSNAKLQEKIQELKANehqlitLKKDVNETQKKvsemeqlkkqikdQSLTLSKL 1813
Cdd:pfam12128 523 DELELQLFPQAGTLlhflRKEAPDWEQSIGKVISPELLHRTD------LDPEVWDGSVG-------------GELNLYGV 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1814 eieNLNLAQKLHENLEEMksvmkerdnlrrvEETLKLERDQLKESLQETKARDLEIQQELKTARM-LSKEHKETVDKLR- 1891
Cdd:pfam12128 584 ---KLDLKRIDVPEWAAS-------------EEELRERLDKAEEALQSAREKQAAAEEQLVQANGeLEKASREETFARTa 647
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1892 -EKISEKTIQISDIQKDL----DKSKDELQKKQDRQNHQVKPEKRLLSDGQQHLTESLRE 1946
Cdd:pfam12128 648 lKNARLDLRRLFDEKQSEkdkkNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE 707
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
654-1627 |
2.46e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.26 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 654 KMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKvpkdllcNLELEGKITDLQKELNKEV 733
Cdd:pfam01576 16 KVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAAR-------KQELEEILHELESRLEEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 734 EENEALReevillselkslpSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYK 813
Cdd:pfam01576 89 ERSQQLQ-------------NEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 814 STDQEFQNFKTLHMDFEQKYKMVLE---ENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLnemE 890
Cdd:pfam01576 156 LLEERISEFTSNLAEEEEKAKSLSKlknKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQI---A 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 891 QLKEQLENRDSTLQTVErekTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQ-----------------LKSDIH 953
Cdd:pfam01576 233 ELRAQLAKKEEELQAAL---ARLEEETAQKNNALKKIRELEAQISELQEDLESERAArnkaekqrrdlgeeleaLKTELE 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 954 DTVNMNIDTQE----------QLRNALES-LKQHQETINTLKSKISEEVsrnlhmeENTGETKDEFQQKMVGIDK-KQDL 1021
Cdd:pfam01576 310 DTLDTTAAQQElrskreqevtELKKALEEeTRSHEAQLQEMRQKHTQAL-------EELTEQLEQAKRNKANLEKaKQAL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1022 EAKNT------QTLTADVKDNEiiEQQRKIFSLIQE-----------KNELQQMLESVIAEKEQLKTDLKENIEMTIENQ 1084
Cdd:pfam01576 383 ESENAelqaelRTLQQAKQDSE--HKRKKLEGQLQElqarlseserqRAELAEKLSKLQSELESVSSLLNEAEGKNIKLS 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1085 EELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKIN------ 1158
Cdd:pfam01576 461 KDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEedagtl 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1159 ------------EIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFET------------ 1214
Cdd:pfam01576 541 ealeegkkrlqrELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQmlaeekaisary 620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1215 --ERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRS----VSEKTAQIINTQDLEKSHTKLQEeipvlhee 1288
Cdd:pfam01576 621 aeERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEmedlVSSKDDVGKNVHELERSKRALEQ-------- 692
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1289 qellpnvkEVSETQETMNELEllTEQSTTKDSTTLARIEMERLRLNEkfqesqeeiksltkERDnLKTIKEALEVKHDQL 1368
Cdd:pfam01576 693 --------QVEEMKTQLEELE--DELQATEDAKLRLEVNMQALKAQF--------------ERD-LQARDEQGEEKRRQL 747
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1369 KEHIRETLAKIQESQSKQEQSLNMKEkdnettKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQEshdEMKSVAKEKDDLQ 1448
Cdd:pfam01576 748 VKQVRELEAELEDERKQRAQAVAAKK------KLELDLKELEAQIDAANKGREEAVKQLKKLQA---QMKDLQRELEEAR 818
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1449 RLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEI 1528
Cdd:pfam01576 819 ASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEEL 898
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1529 yeKEEQFNIKQISEVQEKV--------NELKQFKEHRKAKDSALQSIESKMLELTNRLQEsqEEIQIMIKEKEEMKRVQE 1600
Cdd:pfam01576 899 --EEEQSNTELLNDRLRKStlqveqltTELAAERSTSQKSESARQQLERQNKELKAKLQE--MEGTVKSKFKSSIAALEA 974
|
1050 1060
....*....|....*....|....*..
gi 2217348656 1601 ALQIERDQLKENTKEIVAKMKESQEKE 1627
Cdd:pfam01576 975 KIAQLEEQLEQESRERQAANKLVRRTE 1001
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1461-1723 |
3.19e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 52.62 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1461 LKENIKEIVAK-HleteeELKVAHCCLKEQEETINELRvNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQ 1539
Cdd:PRK05771 14 LKSYKDEVLEAlH-----ELGVVHIEDLKEELSNERLR-KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1540 ISEVQEKVNElkqfkehrkakdsalqsIESKMLELTNRLQESQEEIQIMIKEKEEMKRVqEALQIERDQLK--ENTKEIV 1617
Cdd:PRK05771 88 IKDVEEELEK-----------------IEKEIKELEEEISELENEIKELEQEIERLEPW-GNFDLDLSLLLgfKYVSVFV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1618 AKMKESQEKEYQ----FLKMTAVNETQEKM-----CEIEHLKEQFET-QKLNLENIETENIR-LTQILHENLEEMRSVTK 1686
Cdd:PRK05771 150 GTVPEDKLEELKlesdVENVEYISTDKGYVyvvvvVLKELSDEVEEElKKLGFERLELEEEGtPSELIREIKEELEEIEK 229
|
250 260 270
....*....|....*....|....*....|....*..
gi 2217348656 1687 ERDDLRSVEETLKVERDQLKENLRETITRDLKIQEEL 1723
Cdd:PRK05771 230 ERESLLEELKELAKKYLEELLALYEYLEIELERAEAL 266
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1512-2437 |
3.44e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.74 E-value: 3.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1512 KQLEAINDKLQNKIQEIyeKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE 1591
Cdd:TIGR00606 186 KALETLRQVRQTQGQKV--QEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1592 KEEMKRVQEALQIERDQLKENTKEIVAKMK------ESQEKEYQFLKMTAVNETQEKM--CEIEHLKEQFETQKLNLENI 1663
Cdd:TIGR00606 264 IMKLDNEIKALKSRKKQMEKDNSELELKMEkvfqgtDEQLNDLYHNHQRTVREKERELvdCQRELEKLNKERRLLNQEKT 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1664 ETEN--IRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKE-NLRETITRDLKIQE-ELRIAHMHLKEQQETIDK 1739
Cdd:TIGR00606 344 ELLVeqGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSErQIKNFHTLVIERQEdEAKTAAQLCADLQSKERL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1740 LRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLK---KDVNETQKKVSEMEQLKKQIKDQSLTLSK---- 1812
Cdd:TIGR00606 424 KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEgssDRILELDQELRKAERELSKAEKNSLTETLkkev 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1813 --LEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQlKESLQETKARDLEIQQELKTARMLSKEHKETVDKL 1890
Cdd:TIGR00606 504 ksLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDK-DEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1891 REKISEKTIQISDIQKdldkskdELQKKQDRQNHQVKPEKRLlSDGQQHLTESLREKCSRIKELLKrysemddhyecLNR 1970
Cdd:TIGR00606 583 SKEINQTRDRLAKLNK-------ELASLEQNKNHINNELESK-EEQLSSYEDKLFDVCGSQDEESD-----------LER 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1971 LSLDLEKEiefQKELSMRVKANlslpYLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEM--D 2048
Cdd:TIGR00606 644 LKEEIEKS---SKQRAMLAGAT----AVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSteS 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2049 FIDEVEKQKE-LLIKIQHLQQDCDVPSRELRDLK-LNQNMDLHIEEILKDFSESEfpsikTEFQQVLSNRKEMTQFLEEW 2126
Cdd:TIGR00606 717 ELKKKEKRRDeMLGLAPGRQSIIDLKEKEIPELRnKLQKVNRDIQRLKNDIEEQE-----TLLGTIMPEEESAKVCLTDV 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2127 LNTRFDIEKLKNGIQKENDRICQVNNFFNNRIIAIMN-ESTEFEERSATISKEWEQDLKSLKEKNEKLfkNYQTLKTSLA 2205
Cdd:TIGR00606 792 TIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNqEKQEKQHELDTVVSKIELNRKLIQDQQEQI--QHLKSKTNEL 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2206 SGAQVNPTTQDNKNPHVTSRATQLTTEkIRELENSLHEAKESAMHKESKIIKMQKELEVT----NDIIAKLQAKVHESNK 2281
Cdd:TIGR00606 870 KSEKLQIGTNLQRRQQFEEQLVELSTE-VQSLIREIKDAKEQDSPLETFLEKDQQEKEELisskETSNKKAQDKVNDIKE 948
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2282 CLEKTKETIQVLQDKVALGAKPYKEEIEDLKMKLVKIDLEKMKNAKEFEKEISATKATVEYQKEVIRLLRENLRRSQQAQ 2361
Cdd:TIGR00606 949 KVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKREN 1028
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348656 2362 DTSVISEhtdpqpsnkplTCGGGSGIVQNTKALILKSEHIRLEKEISKLKQQNEQLIKQKNELLSNNQHLSNEVKT 2437
Cdd:TIGR00606 1029 ELKEVEE-----------ELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1003-1603 |
4.93e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 4.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1003 ETKDEFQQKM---VGIDKKQDLE-------AKNTQTLTADVKDN-----EIIEQQRKIFSLIQEKNELQQMLESVIAEKE 1067
Cdd:COG4913 173 DSFSAYLARLrrrLGIGSEKALRllhktqsFKPIGDLDDFVREYmleepDTFEAADALVEHFDDLERAHEALEDAREQIE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1068 QLkTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRtcDRLAEVEEKLKEKSQQLQEKQQQLLNVQ 1147
Cdd:COG4913 253 LL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELR--AELARLEAELERLEARLDALREELDELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1148 EEMSemQKKINEIENLKNELKNKELTLEHMETERLELAQKLN----ENYEEVKSITKERKVLKELQKSFETERDHLRGYI 1223
Cdd:COG4913 330 AQIR--GNGGDRLEQLEREIERLERELEERERRRARLEALLAalglPLPASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1224 REIEATGLQTKEElkiahihLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKL-QEEIPVLHEEQELLPN-------- 1294
Cdd:COG4913 408 AEAEAALRDLRRE-------LRELEAEIASLERRKSNIPARLLALRDALAEALGLdEAELPFVGELIEVRPEeerwrgai 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1295 --------------------------------------VKEVSETQETMNELE-LLTEQSTTKDSTTLARIEMErlrLNE 1335
Cdd:COG4913 481 ervlggfaltllvppehyaaalrwvnrlhlrgrlvyerVRTGLPDPERPRLDPdSLAGKLDFKPHPFRAWLEAE---LGR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1336 KFQ----ESQEEI----KSLTKE-------------------------RDNLKTIkEALEVKHDQLKEHIRETLAKIQES 1382
Cdd:COG4913 558 RFDyvcvDSPEELrrhpRAITRAgqvkgngtrhekddrrrirsryvlgFDNRAKL-AALEAELAELEEELAEAEERLEAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1383 QSKQEQslnMKEKDNETTKIvsEMEQFKPKDSALLRIEIEMLGLSK-RLQESHDEMKSVAKEKDDLQRLQEVLQSESDQL 1461
Cdd:COG4913 637 EAELDA---LQERREALQRL--AEYSWDEIDVASAEREIAELEAELeRLDASSDDLAALEEQLEELEAELEELEEELDEL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1462 KENIKEIVAKHLETEEELKVAHCCLKEQEETINEL----------RVNLSEKETEIS-TIQKQLEAINDKLQNKIQEIYE 1530
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralleerfaAALGDAVERELReNLEERIDALRARLNRAEEELER 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1531 KEEQFNIKQISEVQE------------------KVNELKQFKEhrKAKDSALQSIESKMLELTNRLQESQEEIqimikeK 1592
Cdd:COG4913 792 AMRAFNREWPAETADldadleslpeylalldrlEEDGLPEYEE--RFKELLNENSIEFVADLLSKLRRAIREI------K 863
|
730
....*....|.
gi 2217348656 1593 EEMKRVQEALQ 1603
Cdd:COG4913 864 ERIDPLNDSLK 874
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1435-1629 |
5.01e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 5.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1435 DEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELrvnlsekETEISTIQKQL 1514
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-------LEALQAEIDKL-------QAEIAEAEAEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1515 EAINDKLQNKIQEIYEKEEQFN--------------------IKQISE-VQEKVNELKQFKEHRKAKDSALQSIESKMLE 1573
Cdd:COG3883 82 EERREELGERARALYRSGGSVSyldvllgsesfsdfldrlsaLSKIADaDADLLEELKADKAELEAKKAELEAKLAELEA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348656 1574 LTNRLQESQEEIQimiKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQ 1629
Cdd:COG3883 162 LKAELEAAKAELE---AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1510-1814 |
5.02e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.05 E-value: 5.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1510 IQKQLEAINDKLQnkiQEIYEKEEQFNIKQisEVQEKVNEL---KQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQ 1586
Cdd:pfam17380 277 IVQHQKAVSERQQ---QEKFEKMEQERLRQ--EKEEKAREVerrRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1587 IMIKE--KEEMKRV-QEALQIERDQLKEnTKEIVAKMKESQEKEYQFLKMTAVNETQEkmceiEHLKEQFETQKLNLENI 1663
Cdd:pfam17380 352 RIRQEerKRELERIrQEEIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVKILE-----EERQRKIQQQKVEMEQI 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1664 ETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE--RDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLR 1741
Cdd:pfam17380 426 RAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVErlRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERK 505
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 1742 GIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQlitlkkdvnETQKKVSEMEQLKKQIKDQSLTLSKLE 1814
Cdd:pfam17380 506 QAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEER---------RKQQEMEERRRIQEQMRKATEERSRLE 569
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1079-1807 |
5.26e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 5.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1079 MTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTC-DRLAEVEEKLKEKSQQLQEKQQQLLnVQEEMSEMQKKI 1157
Cdd:TIGR00618 184 MEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLeKELKHLREALQQTQQSHAYLTQKRE-AQEEQLKKQQLL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1158 NEIENLKNELKNKELTLEHMEtERLELAQKLNENYEEVKSITKERKVLKELQKSFEtERDHLRGYIREIEATGLQTKEEL 1237
Cdd:TIGR00618 263 KQLRARIEELRAQEAVLEETQ-ERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQ-SKMRSRAKLLMKRAAHVKQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1238 KIAHIHLKEHQETIDELRRSVSEKTA--QIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQS 1315
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRDAHEVATSirEISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFR 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1316 TTKDSTTLAR--IEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKE----HIRETLAKIQESQSKQEQS 1389
Cdd:TIGR00618 421 DLQGQLAHAKkqQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTkeqiHLQETRKKAVVLARLLELQ 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1390 LNMKEKDNETTKIVSEMEQFkpkdsallrieIEMLGLSKRLQESHDEMKSVAKEkddLQRLQEVLQSESDQLKEnikeiv 1469
Cdd:TIGR00618 501 EEPCPLCGSCIHPNPARQDI-----------DNPGPLTRRMQRGEQTYAQLETS---EEDVYHQLTSERKQRAS------ 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1470 akhleteeelkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQF---NIKQISEVQEK 1546
Cdd:TIGR00618 561 ----------------LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLaceQHALLRKLQPE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1547 VNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQlkeNTKEIVAKMKESQEK 1626
Cdd:TIGR00618 625 QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQ---SEKEQLTYWKEMLAQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1627 eyqflKMTAVNETQEKMCEIEHLKEQFETQKLNL-ENIETENIRLTQILHENLEEMRSVTKER---DDLRSVEETLKVER 1702
Cdd:TIGR00618 702 -----CQTLLRELETHIEEYDREFNEIENASSSLgSDLAAREDALNQSLKELMHQARTVLKARteaHFNNNEEVTAALQT 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1703 DQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLsnMQKDLENsnakLQEKIQELKANEHQLITL 1782
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCET--LVQEEEQ----FLSRLEEKSATLGEITHQ 850
|
730 740
....*....|....*....|....*
gi 2217348656 1783 KKDVNETQKKVSEMEQLKKQIKDQS 1807
Cdd:TIGR00618 851 LLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1329-1549 |
5.97e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 5.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1329 ERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSK-QEQSLNMKEKDNETTKIVSEME 1407
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1408 QFKPKDSALLRiEIEMLGLSKRLQE--SHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCC 1485
Cdd:COG4942 101 AQKEELAELLR-ALYRLGRQPPLALllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348656 1486 LKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEiyEKEEQFNIKQISEVQEKVNE 1549
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE--AEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1522-1794 |
6.40e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 6.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1522 QNKIQEIYEKEEQFNIKQISEVQEKVNELKQfkeHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEA 1601
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKK---EEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1602 LQIERDQLKENTKEIVAKM-KESQEKEYQFLkmtavnetqekmceiehlkeqfetqkLNLENIETENIRLT---QILHEN 1677
Cdd:COG4942 95 LRAELEAQKEELAELLRALyRLGRQPPLALL--------------------------LSPEDFLDAVRRLQylkYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1678 LEEMRSVTKERDDLRSVEETLKVERDQLKENLretitrdlkiqeelriahmhlKEQQETIDKLRGIVSEKTDKLSNMQKD 1757
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALL---------------------AELEEERAALEALKAERQKLLARLEKE 207
|
250 260 270
....*....|....*....|....*....|....*..
gi 2217348656 1758 LENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVS 1794
Cdd:COG4942 208 LAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
450-1561 |
6.51e-06 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 52.14 E-value: 6.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 450 THKLSINLLREIDESVCSESDVFSNTLDTLSEIEWNPATKLLNQENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLK 529
Cdd:PTZ00440 355 SFKFSLEMLSMLDSLLIKKEKILNNLFNKLFGDLKEKIETLLDSEYFISKYTNIISLSEHTLKAAEDVLKENSQKIADYA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 530 EKNDLdefEALERKTKKDQEM----QLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIdsQKLEN 605
Cdd:PTZ00440 435 LYSNL---EIIEIKKKYDEKInelkKSINQLKTLISIMKSFYDLIISEKDSMDSKEKKESSDSNYQEKVDELL--QIINS 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 606 IKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMqVD 685
Cdd:PTZ00440 510 IKEKNNIVNNNFKNIEDYYITIEGLKNEIEGLIELIKYYLQSIETLIKDEKLKRSMKNDIKNKIKYIEENVDHIKDI-IS 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 686 LEKELQSAFNEITKLTSLI------------DGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREE-------VILL 746
Cdd:PTZ00440 589 LNDEIDNIIQQIEELINEAlfnkekfineknDLQEKVKYILNKFYKGDLQELLDELSHFLDDHKYLYHEakskedlQTLL 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 747 SELKSLPSEVERLRKEIQD------KSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQ 820
Cdd:PTZ00440 669 NTSKNEYEKLEFMKSDNIDniiknlKKELQNLLSLKENIIKKQLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLE 748
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 821 NFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRd 900
Cdd:PTZ00440 749 VYKHQIINRKNEFILHLYENDKDLPDGKNTYEEFLQYKDTILNKENKISNDINILKENKKNNQDLLNSYNILIQKLEAH- 827
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 901 stlqtVEREKTLITEKLQQTLEEVKTLTQEKDDlKQLQESLQIERDQLKsDIhDTVNMNIDTQEQLRNALESLKQHQETI 980
Cdd:PTZ00440 828 -----TEKNDEELKQLLQKFPTEDENLNLKELE-KEFNENNQIVDNIIK-DI-ENMNKNINIIKTLNIAINRSNSNKQLV 899
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 981 NTLKskiseevsrnlhmeENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADV-KDNEIIEQQRKIFSLIQEKNELQQML 1059
Cdd:PTZ00440 900 EHLL--------------NNKIDLKNKLEQHMKIINTDNIIQKNEKLNLLNNLnKEKEKIEKQLSDTKINNLKMQIEKTL 965
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1060 ESVIAEKEQLKTDLKENIEMTIENQEELRLLGDEL-------------------KKQQEIVAQEKNHAIKKEGELSRTCD 1120
Cdd:PTZ00440 966 EYYDKSKENINGNDGTHLEKLDKEKDEWEHFKSEIdklnvnynilnkkiddlikKQHDDIIELIDKLIKEKGKEIEEKVD 1045
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1121 R----LAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKI-----------NEIENLKNEL--------KNKELTLEHM 1177
Cdd:PTZ00440 1046 QyislLEKMKTKLSSFHFNIDIKKYKNPKIKEEIKLLEEKVeallkkidenkNKLIEIKNKShehvvnadKEKNKQTEHY 1125
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1178 ETERLELA---QKLNENYEEVKSITKERKVLKELQksfETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDEL 1254
Cdd:PTZ00440 1126 NKKKKSLEkiyKQMEKTLKELENMNLEDITLNEVN---EIEIEYERILIDHIVEQINNEAKKSKTIMEEIESYKKDIDQV 1202
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1255 RRSVSEKTAQIINT----------QDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLA 1324
Cdd:PTZ00440 1203 KKNMSKERNDHLTTfeynayydkaTASYENIEELTTEAKGLKGEANRSTNVDELKEIKLQVFSYLQQVIKENNKMENALH 1282
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1325 RIE-MERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIV 1403
Cdd:PTZ00440 1283 EIKnMYEFLISIDSEKILKEILNSTKKAEEFSNDAKKELEKTDNLIKQVEAKIEQAKEHKNKIYGSLEDKQIDDEIKKIE 1362
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1404 SEMEQFKPKDSAllrIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKE----NIKEIVAKHLETEEEL 1479
Cdd:PTZ00440 1363 QIKEEISNKRKE---INKYLSNIKSNKEKCDLHVRNASRGKDKIDFLNKHEAIEPSNSKEvniiKITDNINKCKQYSNEA 1439
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1480 KVAHCCLKEQEETINELRVNLSE--KETEISTIQKQLEAINDKLQNKIQEIyeKEEQFNIKQISEV-QEKVNELKQFKEH 1556
Cdd:PTZ00440 1440 METENKADENNDSIIKYEKEITNilNNSSILGKKTKLEKKKKEATNIMDDI--NGEHSIIKTKLTKsSEKLNQLNEQPNI 1517
|
....*
gi 2217348656 1557 RKAKD 1561
Cdd:PTZ00440 1518 KREGD 1522
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1016-1527 |
7.08e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.84 E-value: 7.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1016 DKKQDLEAKNTQTL-TADVKdneiieqqrkifSLIQEKNELQQMLES---VIAEKEQLKTDLKENIEMTIENQEELrllg 1091
Cdd:PRK11281 40 DVQAQLDALNKQKLlEAEDK------------LVQQDLEQTLALLDKidrQKEETEQLKQQLAQAPAKLRQAQAEL---- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1092 DELKKQQEIVAQE--KNHAIKK-EGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELK 1168
Cdd:PRK11281 104 EALKDDNDEETREtlSTLSLRQlESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1169 NKELTLEHMETERLELAQKLNEnyeevKSITKERKVLK---ELQKSFETERDHLRGYIREIEAtglqtkeelkiahiHLK 1245
Cdd:PRK11281 184 VGGKALRPSQRVLLQAEQALLN-----AQNDLQRKSLEgntQLQDLLQKQRDYLTARIQRLEH--------------QLQ 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1246 EHQETIDELRRSVSEKTA-QIINTQDLEKSHTKlqeeiPVLHEEQELlpNVKeVSEtqetmnelELLteQSTTkdsttla 1324
Cdd:PRK11281 245 LLQEAINSKRLTLSEKTVqEAQSQDEAARIQAN-----PLVAQELEI--NLQ-LSQ--------RLL--KATE------- 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1325 riemerlRLNEKFQESQEeikslTKER-DNL----KTIKEALEVKHDQLkehireTLAKIqesQSKQEQSLnmkekdnET 1399
Cdd:PRK11281 300 -------KLNTLTQQNLR-----VKNWlDRLtqseRNIKEQISVLKGSL------LLSRI---LYQQQQAL-------PS 351
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1400 TKIVSEMeqfkPKDSALLRIEIemlglsKRLQESHDEMKSVAKEKDDLQRLQEvlQSESDQLKENIKEIvakhLETEEEL 1479
Cdd:PRK11281 352 ADLIEGL----ADRIADLRLEQ------FEINQQRDALFQPDAYIDKLEAGHK--SEVTDEVRDALLQL----LDERREL 415
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 2217348656 1480 kvahcclkeQEETINELRVNLSEKET-EIStiQKQLEAINDKLQNKIQE 1527
Cdd:PRK11281 416 ---------LDQLNKQLNNQLNLAINlQLN--QQQLLSVSDSLQSTLTQ 453
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
485-1227 |
8.46e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 8.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 485 NPATKLLNQENIESELN----SLRAD--------YDNLVLDyEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQEMQL 552
Cdd:TIGR00606 332 NKERRLLNQEKTELLVEqgrlQLQADrhqehiraRDSLIQS-LATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTA 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 553 IHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQK--LENIKMDLSYSLESIEDPKQMKQTLFDA 630
Cdd:TIGR00606 411 AQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIkeLQQLEGSSDRILELDQELRKAERELSKA 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 631 ETVALDA--KRESAFLRSENLELKEKMKELATTYKQMENDIQ-LYQSQLEAKKKMQVDLE-------------------- 687
Cdd:TIGR00606 491 EKNSLTEtlKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTtRTQMEMLTKDKMDKDEQirkiksrhsdeltsllgyfp 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 688 --KELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQD 765
Cdd:TIGR00606 571 nkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEK 650
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 766 KSEELHII---TSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLattqsnykstdQEFQNfktlhmDFEQKYKMVLEENER 842
Cdd:TIGR00606 651 SSKQRAMLagaTAVYSQFITQLTDENQSCCPVCQRVFQTEAEL-----------QEFIS------DLQSKLRLAPDKLKS 713
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 843 MNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTL---------I 913
Cdd:TIGR00606 714 TESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESakvcltdvtI 793
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 914 TEKLQQTLEEV-KTLTQEKDDLKQLQESLQI----ERDQLKSDIHDTVNMNIDTQEQLRNALESLKQH-QETINTLKS-- 985
Cdd:TIGR00606 794 MERFQMELKDVeRKIAQQAAKLQGSDLDRTVqqvnQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHlKSKTNELKSek 873
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 986 -KISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRkifsliQEKNELQQMLESVIA 1064
Cdd:TIGR00606 874 lQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK------ETSNKKAQDKVNDIK 947
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1065 EKEQLKTDLKENIEMTIENQEelrllgDELKKQQEivaqekNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLL 1144
Cdd:TIGR00606 948 EKVKNIHGYMKDIENKIQDGK------DDYLKQKE------TELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1145 NVQEEMSEMQKKiNEIENLKNELKNKELTLEHMETerLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIR 1224
Cdd:TIGR00606 1016 WLQDNLTLRKRE-NELKEVEEELKQHLKEMGQMQV--LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092
|
...
gi 2217348656 1225 EIE 1227
Cdd:TIGR00606 1093 EPQ 1095
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
438-1946 |
9.02e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.59 E-value: 9.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 438 DQFNIPTNITTKTHKLSINLLREIDESVCSESDVFSNTL-DTLSEIEwnPATKLLNQENIESELNSLRADYDNLvldYEQ 516
Cdd:TIGR01612 934 EKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLiDKINELD--KAFKDASLNDYEAKNNELIKYFNDL---KAN 1008
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 517 LRTEKEEMELKLKEKNDldefealerKTKKDQEMQLIHEISNLKN--LVKHAEVYNqdlenelsskveLLREKEDQIKKL 594
Cdd:TIGR01612 1009 LGKNKENMLYHQFDEKE---------KATNDIEQKIEDANKNIPNieIAIHTSIYN------------IIDEIEKEIGKN 1067
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 595 QEYIDSQKLENIKMDLsyslesiedpkqmkqTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQS 674
Cdd:TIGR01612 1068 IELLNKEILEEAEINI---------------TNFNEIKEKLKHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIK 1132
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 675 QLEAKKKMQVDLEKELQSAFNEITKLT-SLIDGKVPKdllcnlELEGKITDLQKELNKEVEENEALREEVILLSELKSLP 753
Cdd:TIGR01612 1133 ALEEIKKKSENYIDEIKAQINDLEDVAdKAISNDDPE------EIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDK 1206
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 754 SEVERLRKEIQDKSEELHI-----ITSEKDKLFSEVVHKESRVQGLlEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMD 828
Cdd:TIGR01612 1207 TSLEEVKGINLSYGKNLGKlflekIDEEKKKSEHMIKAMEAYIEDL-DEIKEKSPEIENEMGIEMDIKAEMETFNISHDD 1285
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 829 FeQKYKMVLEENERMNQEIVNLS-KEAQKF--DSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLenRDSTLQT 905
Cdd:TIGR01612 1286 D-KDHHIISKKHDENISDIREKSlKIIEDFseESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNIL--KLNKIKK 1362
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 906 VEREKTLITEKLQQTLEEVKT-LTQEKDDLKQLQESLQIErdQLKSDIHDTVNmNIDTQEQLRNALESlKQH---QETIN 981
Cdd:TIGR01612 1363 IIDEVKEYTKEIEENNKNIKDeLDKSEKLIKKIKDDINLE--ECKSKIESTLD-DKDIDECIKKIKEL-KNHilsEESNI 1438
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 982 TLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKkqdleakNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLES 1061
Cdd:TIGR01612 1439 DTYFKNADENNENVLLLFKNIEMADNKSQHILKIKK-------DNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEK 1511
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1062 VIAEKEQLKTDLKENIEMTIEnqEELRLLGDELKKQQEIVAQE----KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQ 1137
Cdd:TIGR01612 1512 NKELFEQYKKDVTELLNKYSA--LAIKNKFAKTKKDSEIIIKEikdaHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKND 1589
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1138 EKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELA-----QKLNENYEEVKSITKERKVLKELQKSF 1212
Cdd:TIGR01612 1590 KSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKISSFSidsqdTELKENGDNLNSLQEFLESLKDQKKNI 1669
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1213 E---TERDHLRGYIREIEATGLQTK--------EELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHT----- 1276
Cdd:TIGR01612 1670 EdkkKELDELDSEIEKIEIDVDQHKknyeigiiEKIKEIAIANKEEIESIKELIEPTIENLISSFNTNDLEGIDPnekle 1749
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1277 KLQEEIPVLHEEQELLPNVkevsetqeTMNELELLTEQSTTKDSTTLARIEMERLRLneKFQESQEEIKSLTK--ERDNL 1354
Cdd:TIGR01612 1750 EYNTEIGDIYEEFIELYNI--------IAGCLETVSKEPITYDEIKNTRINAQNEFL--KIIEIEKKSKSYLDdiEAKEF 1819
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1355 KTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKpkdsallriEIEMLGLSKRLQESH 1434
Cdd:TIGR01612 1820 DRIINHFKKKLDHVNDKFTKEYSKINEGFDDISKSIENVKNSTDENLLFDILNKTK---------DAYAGIIGKKYYSYK 1890
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1435 DEMKSVAKEKDDL-QRLQEVLQSESD-QLKENIKEIVAKHLETEEELKVAHCCLKEQE-ETINELR------VNLSEKET 1505
Cdd:TIGR01612 1891 DEAEKIFINISKLaNSINIQIQNNSGiDLFDNINIAILSSLDSEKEDTLKFIPSPEKEpEIYTKIRdsydtlLDIFKKSQ 1970
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1506 EisTIQKQLEAINdkLQNKIQEIYEKEEQFN----------------IKQISEVQEKVNELKQFKEHRKAKDSALQSieS 1569
Cdd:TIGR01612 1971 D--LHKKEQDTLN--IIFENQQLYEKIQASNelkdtlsdlkykkekiLNDVKLLLHKFDELNKLSCDSQNYDTILEL--S 2044
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1570 KMLELTNRLQESQEEiqimiKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKmcEIEHL 1649
Cdd:TIGR01612 2045 KQDKIKEKIDNYEKE-----KEKFGIDFDVKAMEEKFDNDIKDIEKFENNYKHSEKDNHDFSEEKDNIIQSKK--KLKEL 2117
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1650 KEQFETQKLNLENIETENIRLTQILHENLEE--MRSVTKERDDLRS--------VEETLKVERDQLK--ENLRETITRD- 1716
Cdd:TIGR01612 2118 TEAFNTEIKIIEDKIIEKNDLIDKLIEMRKEclLFSYATLVETLKSkvinhsefITSAAKFSKDFFEfiEDISDSLNDDi 2197
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1717 --LKIQEELRIAHMHLKEQQETIDKLRGIVSEK----TDKLSNMQK----DLENSNAKLqekiqeLKANEHQLITLKkdv 1786
Cdd:TIGR01612 2198 daLQIKYNLNQTKKHMISILADATKDHNNLIEKekeaTKIINNLTElftiDFNNADADI------LHNNKIQIIYFN--- 2268
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1787 NETQKKVSEMEQLKKQIKDQSLT-----------LSKlEIENLNLAQK--LHENLEEMKSVM-----KERDNLRRVEETL 1848
Cdd:TIGR01612 2269 SELHKSIESIKKLYKKINAFKLLnishinekyfdISK-EFDNIIQLQKhkLTENLNDLKEIDqyisdKKNIFLHALNENT 2347
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1849 KLERDQLKESLQ-----ETKARDLEIQQELKTARMLSkeHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQN 1923
Cdd:TIGR01612 2348 NFNFNALKEIYDdiinrENKADEIENINNKENENIMQ--YIDTITKLTEKIQDILIFVTTYENDNNIIKQHIQDNDENDV 2425
|
1610 1620
....*....|....*....|...
gi 2217348656 1924 HQVKPEKRLLSDGQQHLTESLRE 1946
Cdd:TIGR01612 2426 SKIKDNLKKTIQSFQEILNKIDE 2448
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
495-1096 |
9.60e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 9.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 495 NIESELNSLRADYDNLVLDYEQLRTEKEEMEL----------KLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVK 564
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIELlepirelaerYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 565 HAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQKLENIKMDLSySLESIEDPKQMKQTLFDAETVALDAKRESAfl 644
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIE-RLERELEERERRRARLEALLAALGLPLPAS-- 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 645 RSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKmqvDLEKELQSAFNEITKLT---SLIDGKVP--KDLLCNlELE 719
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALR---DLRRELRELEAEIASLErrkSNIPARLLalRDALAE-ALG 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 720 GKITDLQ--KELnKEVEENEALREEVI----------LLSELKSLP---SEVERLRKE-------IQDKSEELHIITSEK 777
Cdd:COG4913 455 LDEAELPfvGEL-IEVRPEEERWRGAIervlggfaltLLVPPEHYAaalRWVNRLHLRgrlvyerVRTGLPDPERPRLDP 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 778 DKLFSEVVHKESRVQGLLE-EIGKTKDDLATTqsnyksTDQEFQNF-------------KTLH-MDF------------- 829
Cdd:COG4913 534 DSLAGKLDFKPHPFRAWLEaELGRRFDYVCVD------SPEELRRHpraitragqvkgnGTRHeKDDrrrirsryvlgfd 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 830 -EQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELS-----YKTQELQEKTREVQERLNEMEQLKEQLENRDSTL 903
Cdd:COG4913 608 nRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREalqrlAEYSWDEIDVASAEREIAELEAELERLDASSDDL 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 904 QTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNM--------------NIDTQEQLRNA 969
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLarlelralleerfaAALGDAVEREL 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 970 LESLKQHQETINTLKSKISEEVSRnlHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQtltadVKDNEIIEQQRKIFSLI 1049
Cdd:COG4913 768 RENLEERIDALRARLNRAEEELER--AMRAFNREWPAETADLDADLESLPEYLALLDR-----LEEDGLPEYEERFKELL 840
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 2217348656 1050 QEKNelqqmlesvIAEKEQLKTDLKENIEmTIEnqEELRLLGDELKK 1096
Cdd:COG4913 841 NENS---------IEFVADLLSKLRRAIR-EIK--ERIDPLNDSLKR 875
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
719-923 |
9.78e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 9.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 719 EGKITDLQKELNKEVEENEALREEvillseLKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEI 798
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAE------LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 799 GKTKDDLATTQSNYKSTDQEF--QNFKtlhmDFEQKYKMVLEENERmNQEIVNLSKEAQKfdsSLGALKTELSYKTQELQ 876
Cdd:COG3883 89 GERARALYRSGGSVSYLDVLLgsESFS----DFLDRLSALSKIADA-DADLLEELKADKA---ELEAKKAELEAKLAELE 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2217348656 877 EKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEE 923
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1085-1236 |
1.18e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.55 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1085 EELRLLGDELKKQQEIVAQEKNHAIKKEGElsrtcdrlAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLK 1164
Cdd:PRK12704 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFE--------KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKE 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348656 1165 NELKNKELTLEHMETERLELAQKLNENYEEVKSITKE---RKVLKELQKSFETERDHlrgYIREIEAtglQTKEE 1236
Cdd:PRK12704 117 KELEQKQQELEKKEEELEELIEEQLQELERISGLTAEeakEILLEKVEEEARHEAAV---LIKEIEE---EAKEE 185
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
541-1103 |
1.26e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 541 ERKTKKDQEMQLiHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQKLENIKMDLSYSLESIEDP 620
Cdd:COG1196 220 EELKELEAELLL-LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 621 KQMKQTLFDAETVAlDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKL 700
Cdd:COG1196 299 RLEQDIARLEERRR-ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 701 TSLIDGKVpKDLLcnLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKL 780
Cdd:COG1196 378 EEELEELA-EELL--EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 781 FSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVN--LSKEAQKFD 858
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgaVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 859 SSLGALKTELSYKTQELQEKTREVQERLneMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQ 938
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAA--IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 939 ESLQIERDQL--KSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMvgID 1016
Cdd:COG1196 613 ARYYVLGDTLlgRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL--AE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1017 KKQDLEAKNTQTLTADVKDNEIIEQQRkifsliQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKK 1096
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERL------EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
....*..
gi 2217348656 1097 QQEIVAQ 1103
Cdd:COG1196 765 LERELER 771
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
520-1760 |
1.29e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.21 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 520 EKEEMELKLKEKNDLDEFEALERKTKKDQEMQLI-HEISNLKNLVKHAEVYNQDlenELSSKVELLREKEDQIKKL---- 594
Cdd:TIGR01612 465 EKRFFEIFEEEWGSYDIKKDIDENSKQDNTVKLIlMRMKDFKDIIDFMELYKPD---EVPSKNIIGFDIDQNIKAKlyke 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 595 ------QEYIDSQKLENIKMDLSYSLESI-EDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMEN 667
Cdd:TIGR01612 542 ieaglkESYELAKNWKKLIHEIKKELEEEnEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNEYIKK 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 668 DIQLyQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLlcNLELEGKITDLQKELNKEVEENEAlrEEVILLS 747
Cdd:TIGR01612 622 AIDL-KKIIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSEL--SKIYEDDIDALYNELSSIVKENAI--DNTEDKA 696
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 748 ELKSLPSEVERLRKEIQDKSEE-----LHIITSEKDKLFSEVVHKESRVQGLL-EEIGKTKDDLATTQSNYKSTDQEFQN 821
Cdd:TIGR01612 697 KLDDLKSKIDKEYDKIQNMETAtvelhLSNIENKKNELLDIIVEIKKHIHGEInKDLNKILEDFKNKEKELSNKINDYAK 776
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 822 FKtlhmDFEQKYKMVLEE-----NERMNQEIVNLSKEAQKFDSSLGALKTelsyktqeLQEKTREVQERLNEMEQLKEQL 896
Cdd:TIGR01612 777 EK----DELNKYKSKISEiknhyNDQINIDNIKDEDAKQNYDKSKEYIKT--------ISIKEDEIFKIINEMKFMKDDF 844
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 897 ENRDSTLQTVERE-KTLITEKLQQTLEEVKTLTQEKDDlKQLQESLQIERDQlKSDIHDTVN------MNIDTQEQLRNA 969
Cdd:TIGR01612 845 LNKVDKFINFENNcKEKIDSEHEQFAELTNKIKAEISD-DKLNDYEKKFNDS-KSLINEINKsieeeyQNINTLKKVDEY 922
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 970 LESLKQHQETINTLKSK---ISEEVSRNLHMEENTGETKDEFQQKMVG--IDKKQDLEAKNTQTLTAD--VKDNEIIEQ- 1041
Cdd:TIGR01612 923 IKICENTKESIEKFHNKqniLKEILNKNIDTIKESNLIEKSYKDKFDNtlIDKINELDKAFKDASLNDyeAKNNELIKYf 1002
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1042 --------QRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKeNIEMTIENQeeLRLLGDELKKQQEIVAQEKNHAIKKEG 1113
Cdd:TIGR01612 1003 ndlkanlgKNKENMLYHQFDEKEKATNDIEQKIEDANKNIP-NIEIAIHTS--IYNIIDEIEKEIGKNIELLNKEILEEA 1079
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1114 ELSRTcdRLAEVEEKLK-----------------EKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEH 1176
Cdd:TIGR01612 1080 EINIT--NFNEIKEKLKhynfddfgkeenikyadEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLED 1157
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1177 -----METERLELAQKLNEN-----------YEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIA 1240
Cdd:TIGR01612 1158 vadkaISNDDPEEIEKKIENivtkidkkkniYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKK 1237
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1241 HIH----LKEHQETIDELRRSVSEKTAQIINTQDLEK-------SHTKLQEEIPVLHEEQELLPNVKE------------ 1297
Cdd:TIGR01612 1238 SEHmikaMEAYIEDLDEIKEKSPEIENEMGIEMDIKAemetfniSHDDDKDHHIISKKHDENISDIREkslkiiedfsee 1317
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1298 -------------VSETQETMNELEL-LTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDN----LKTIKE 1359
Cdd:TIGR01612 1318 sdindikkelqknLLDAQKHNSDINLyLNEIANIYNILKLNKIKKIIDEVKEYTKEIEENNKNIKDELDKseklIKKIKD 1397
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1360 ALEVKHDQLK-------EHIRETLAKIQESQS---KQEQSL-----NMKEKDNETTKIVSEMEQFKPKDSALLRIEI--- 1421
Cdd:TIGR01612 1398 DINLEECKSKiestlddKDIDECIKKIKELKNhilSEESNIdtyfkNADENNENVLLLFKNIEMADNKSQHILKIKKdna 1477
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1422 --EMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETE----------------EELKVAH 1483
Cdd:TIGR01612 1478 tnDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAiknkfaktkkdseiiiKEIKDAH 1557
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1484 CCLKEQ----EETINELR---------------------------VNLSEKETEISTIQKQL-------EAINDKLQNKI 1525
Cdd:TIGR01612 1558 KKFILEaeksEQKIKEIKkekfrieddaakndksnkaaidiqlslENFENKFLKISDIKKKIndclketESIEKKISSFS 1637
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1526 QEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKeemkrVQEALQIE 1605
Cdd:TIGR01612 1638 IDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEK-----IKEIAIAN 1712
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1606 RDQLkENTKEIVAKMKESQEKEYQFLKMTAVNeTQEKMceiehlkEQFETQklnLENIETENIRLTQILHENLEemrSVT 1685
Cdd:TIGR01612 1713 KEEI-ESIKELIEPTIENLISSFNTNDLEGID-PNEKL-------EEYNTE---IGDIYEEFIELYNIIAGCLE---TVS 1777
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1686 KERDDLRSVEETLKVERDQLKENLR-----ETITRDLKIQEELRIAHmHLKEQQETI-DKLRGIVSEKTDKLSNMQKDLE 1759
Cdd:TIGR01612 1778 KEPITYDEIKNTRINAQNEFLKIIEiekksKSYLDDIEAKEFDRIIN-HFKKKLDHVnDKFTKEYSKINEGFDDISKSIE 1856
|
.
gi 2217348656 1760 N 1760
Cdd:TIGR01612 1857 N 1857
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
938-1609 |
1.31e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 938 QESLQIERDQLKSDIHDT-----VNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKM 1012
Cdd:pfam12128 213 PPKSRLNRQQVEHWIRDIqaiagIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1013 VGIDK--KQDLEAKNTQTLTADVK------DNEIIEQQRKIFsliqekneLQQMLESVIAEKEQLktdlkENIEMTIENQ 1084
Cdd:pfam12128 293 RTLDDqwKEKRDELNGELSAADAAvakdrsELEALEDQHGAF--------LDADIETAAADQEQL-----PSWQSELENL 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1085 EELR--LLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEV-EEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINE-- 1159
Cdd:pfam12128 360 EERLkaLTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIrEARDRQLAVAEDDLQALESELREQLEAGKLEFNEee 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1160 --IENLKNELKNKELTLEHMETERLELAQK---LNENYEEVKSITKERKVLKELQKSFETERDhlrgyireieatglQTK 1234
Cdd:pfam12128 440 yrLKSRLGELKLRLNQATATPELLLQLENFderIERAREEQEAANAEVERLQSELRQARKRRD--------------QAS 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1235 EELKIAHIHLKEHQETIDELRRSVSEKTAQII-----NTQDLEKSHTKLQEeiPVLHEEQELLPNVKEVSETQETmnele 1309
Cdd:pfam12128 506 EALRQASRRLEERQSALDELELQLFPQAGTLLhflrkEAPDWEQSIGKVIS--PELLHRTDLDPEVWDGSVGGEL----- 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1310 llteqsttkdSTTLARIEMERLRLNEKFQESQEeiksLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQS 1389
Cdd:pfam12128 579 ----------NLYGVKLDLKRIDVPEWAASEEE----LRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFA 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1390 LN-MKEKDNETTKIVSEMEQFKPKDSAllrieiemlGLSKRLQESHDEMKSVAKEKDDLQR-LQEVLQSESDQLKENIKE 1467
Cdd:pfam12128 645 RTaLKNARLDLRRLFDEKQSEKDKKNK---------ALAERKDSANERLNSLEAQLKQLDKkHQAWLEEQKEQKREARTE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1468 IVAKHLETEEELKVAHCCLKEQEETINE-LRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQfnIKQISEVQEK 1546
Cdd:pfam12128 716 KQAYWQVVEGALDAQLALLKAAIAARRSgAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERK--IERIAVRRQE 793
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1547 VNELKQFKEH-----RKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQL 1609
Cdd:pfam12128 794 VLRYFDWYQEtwlqrRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSEN 861
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
512-785 |
1.82e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 512 LDYEQLRtEKEEMELKLKEKndLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQI 591
Cdd:PRK05771 40 LSNERLR-KLRSLLTKLSEA--LDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 592 KKLQEYIDS-QKLENIKMDLSYslesiedpkqmkqtLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQ 670
Cdd:PRK05771 117 KELEQEIERlEPWGNFDLDLSL--------------LLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 671 LYqsqleAKKKMQVDLEKELqsAFNEITKLtSLIDGKVPKDLLCNL-----ELEGKITDLQKELNK-------------E 732
Cdd:PRK05771 183 VV-----VLKELSDEVEEEL--KKLGFERL-ELEEEGTPSELIREIkeeleEIEKERESLLEELKElakkyleellalyE 254
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 733 VEENEALREEViLLSELKS---------LPSE-VERLRKEIQDKSEELHIITSEKDKLFSEVV 785
Cdd:PRK05771 255 YLEIELERAEA-LSKFLKTdktfaiegwVPEDrVKKLKELIDKATGGSAYVEFVEPDEEEEEV 316
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
493-989 |
1.83e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 493 QENIESELNSLRADYDNLVLDYEQLRtekEEMELKLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQD 572
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQ---AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 573 LENELSSKVELLREKEDQIKKLQeyidsQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELK 652
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELA-----EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 653 EKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQK----- 727
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEaaarl 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 728 ELNKEVEENEALREEVILLSELKSLPSEVER-LRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTK---- 802
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAALLLAGLRGLAGaVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagr 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 803 ------DDLATTQSNYKSTDQEFQNFKTLHMDFEQKY----KMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELS-YK 871
Cdd:COG1196 574 atflplDKIRARAALAAALARGAIGAAVDLVASDLREadarYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTlEG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 872 TQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSD 951
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
490 500 510
....*....|....*....|....*....|....*...
gi 2217348656 952 IHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISE 989
Cdd:COG1196 734 REELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1439-1611 |
2.66e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 2.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1439 SVAKEKDDLQRLQEvLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAIN 1518
Cdd:COG1579 1 AMPEDLRALLDLQE-LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1519 DKLQ----NKIQEIYEKEEQFNIKQISEVQEkvnELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQimiKEKEE 1594
Cdd:COG1579 80 EQLGnvrnNKEYEALQKEIESLKRRISDLED---EILELMERIEELEEELAELEAELAELEAELEEKKAELD---EELAE 153
|
170
....*....|....*..
gi 2217348656 1595 MKRVQEALQIERDQLKE 1611
Cdd:COG1579 154 LEAELEELEAEREELAA 170
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
863-1104 |
3.04e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 863 ALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEkddLKQLQESLQ 942
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE---IAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 943 IERDQLKsdihdtvnmnidtqEQLRnALESLKQHQETINTLKSKISEEVSRNLHMeentgetkdefQQKMVGIDKKQDLE 1022
Cdd:COG4942 101 AQKEELA--------------ELLR-ALYRLGRQPPLALLLSPEDFLDAVRRLQY-----------LKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1023 AKNTQTLTADVKDnEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKEN-------IEMTIENQEELRLLGDELK 1095
Cdd:COG4942 155 LRADLAELAALRA-ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKElaelaaeLAELQQEAEELEALIARLE 233
|
....*....
gi 2217348656 1096 KQQEIVAQE 1104
Cdd:COG4942 234 AEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1428-1868 |
3.05e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 3.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1428 KRLQESHDEMKSVAKEKDDLQRL------------QEVLQSESDQLKENIKEIVAKHLETEEELKvahcclkEQEETINE 1495
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLraalrlwfaqrrLELLEAELEELRAELARLEAELERLEARLD-------ALREELDE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1496 LRVNLSEKETE-ISTIQKQLEAINDKLQNKIQ--EIYEKE-EQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKM 1571
Cdd:COG4913 328 LEAQIRGNGGDrLEQLEREIERLERELEERERrrARLEALlAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1572 LELTNRLQESQEEIQIMIKEKEEMKRVQ----EALQIERDQLKENTKEIVAKM---------KESQEK------------ 1626
Cdd:COG4913 408 AEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALAEALGLDEAELpfvgelievRPEEERwrgaiervlggf 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1627 --------EY--QFLKmtAVNETqekmceieHLKEQFETQKLNLENIETENIR--------------------LTQILH- 1675
Cdd:COG4913 488 altllvppEHyaAALR--WVNRL--------HLRGRLVYERVRTGLPDPERPRldpdslagkldfkphpfrawLEAELGr 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1676 -------ENLEEM----RSVTKE--------------RDDLRSV----------EETLKVERDQLKENLRE------TIT 1714
Cdd:COG4913 558 rfdyvcvDSPEELrrhpRAITRAgqvkgngtrhekddRRRIRSRyvlgfdnrakLAALEAELAELEEELAEaeerleALE 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1715 RDLKIQEELRIAHMHLKEQQETIDKLRGIVSEkTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVS 1794
Cdd:COG4913 638 AELDALQERREALQRLAEYSWDEIDVASAERE-IAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIG 716
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348656 1795 EMEQLKKQIKDQ-SLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLqETKARDLE 1868
Cdd:COG4913 717 RLEKELEQAEEElDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL-NRAEEELE 790
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1675-2444 |
3.30e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1675 HENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNM 1754
Cdd:pfam02463 155 RLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1755 QKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSV 1834
Cdd:pfam02463 235 NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1835 MKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDE 1914
Cdd:pfam02463 315 KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1915 LQKKQDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKELSMRVKANLS 1994
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1995 LPYLQTKHIEKLFTANQRcSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEMDFIDEVEKQKELLIKIQHLQQDCDVPS 2074
Cdd:pfam02463 475 KETQLVKLQEQLELLLSR-QKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2075 RELRDLKLNQNMDLHIEEILKDFSESEFPSIKTEFQQVLSNRKemtqflEEWLNTRFDIEKLKNGIQKENDRICQVNNFF 2154
Cdd:pfam02463 554 SATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAV------LEIDPILNLAQLDKATLEADEDDKRAKVVEG 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2155 NNRIIAIMnESTEFEERSATISKEWEQDLKSLKEKNEKLFKNYQTLKTSLASGAQVNPTTQDNKNPHVTSRATQLTTEKI 2234
Cdd:pfam02463 628 ILKDTELT-KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQ 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2235 RELENSLHEAKESamhKESKIIKMQKELEVTNDIIAKLQAKVHESNKCLEKTK-ETIQVLQDKVALGAKPYKEEIEDLKM 2313
Cdd:pfam02463 707 REKEELKKLKLEA---EELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRlKKEEKEEEKSELSLKEKELAEEREKT 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2314 KLVKIDLEKMKNAKEFEKEISATKATVEYQKEVIRLLRENLRRSQQAQDTSVISEHTDPQPSNKpltcggGSGIVQNTKA 2393
Cdd:pfam02463 784 EKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK------LEKLAEEELE 857
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 2217348656 2394 LILKSEHIRLEKEISKLKQQNEQLIKQKNELLSNNQHLSNEVKTWKERTLK 2444
Cdd:pfam02463 858 RLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 908
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1730-1922 |
3.44e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1730 LKEQQETIDKLRGIVSEKTDK-LSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNET----QKKVSEMEQLKKQIK 1804
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKdLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVleehEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1805 DQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHK 1884
Cdd:PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2217348656 1885 ETVDKLREKI-------SEKTIQISDIQKDLDKSKDELQKKQDRQ 1922
Cdd:PRK02224 342 EEAESLREDAddleeraEELREEAAELESELEEAREAVEDRREEI 386
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1285-2418 |
3.54e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 49.66 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1285 LHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLAR-IEMERLRLNEKFQESQEEIKSLTKERDNL-----KTIK 1358
Cdd:TIGR01612 514 LYKPDEVPSKNIIGFDIDQNIKAKLYKEIEAGLKESYELAKnWKKLIHEIKKELEEENEDSIHLEKEIKDLfdkylEIDD 593
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1359 EALEVkhDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEM---------EQFKPKDSALLRIEIEMLGLSK- 1428
Cdd:TIGR01612 594 EIIYI--NKLKLELKEKIKNISDKNEYIKKAIDLKKIIENNNAYIDELakispyqvpEHLKNKDKIYSTIKSELSKIYEd 671
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1429 RLQESHDEMKSVAKEKD--------DLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKvahcclKEQEETINELRVNL 1500
Cdd:TIGR01612 672 DIDALYNELSSIVKENAidntedkaKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKK------NELLDIIVEIKKHI 745
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1501 -SEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNI--KQISEVQEKVNELKQFkEHRKAKDSALQSIESKmlELTNR 1577
Cdd:TIGR01612 746 hGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKykSKISEIKNHYNDQINI-DNIKDEDAKQNYDKSK--EYIKT 822
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1578 LQESQEEIQIMIKEKEEMK---------------RVQEALQIERDQLKENTKEIVAKMKESQEKEYQflkmTAVNETQEK 1642
Cdd:TIGR01612 823 ISIKEDEIFKIINEMKFMKddflnkvdkfinfenNCKEKIDSEHEQFAELTNKIKAEISDDKLNDYE----KKFNDSKSL 898
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1643 MCEIEHLKEQfETQKLNLENIETENIRLTQILHENLEEMRSvtkerddlrsveetlkvERDQLKENLRETITRdlkiqee 1722
Cdd:TIGR01612 899 INEINKSIEE-EYQNINTLKKVDEYIKICENTKESIEKFHN-----------------KQNILKEILNKNIDT------- 953
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1723 lrIAHMHLKEQQETiDKLRGIVSEKTDKLSNMQKDL-----ENSNAKLQEKIQELKAN--EHQLITLKKDVNETQKKVSE 1795
Cdd:TIGR01612 954 --IKESNLIEKSYK-DKFDNTLIDKINELDKAFKDAslndyEAKNNELIKYFNDLKANlgKNKENMLYHQFDEKEKATND 1030
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1796 MEQlkkQIKDQSLTLSKLEIENLNLAQKLHENLEEM--KSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQEL 1873
Cdd:TIGR01612 1031 IEQ---KIEDANKNIPNIEIAIHTSIYNIIDEIEKEigKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDDFGKEENI 1107
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1874 KTARMLSKEhKETVDKLREKISEKTIQISDIQKDLDKSKDELqKKQDRQNHQVKpEKRLLSDGQQHLTESLREKCSRIKE 1953
Cdd:TIGR01612 1108 KYADEINKI-KDDIKNLDQKIDHHIKALEEIKKKSENYIDEI-KAQINDLEDVA-DKAISNDDPEEIEKKIENIVTKIDK 1184
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1954 LLKRYSEMDDHYECLNRLSLDlEKEIEFQKELSMRVKANLSLPYLQTKHIEKLFTANQRCSMEfhRIMKKLKYVLSYVTK 2033
Cdd:TIGR01612 1185 KKNIYDEIKKLLNEIAEIEKD-KTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAME--AYIEDLDEIKEKSPE 1261
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2034 IKEEQH-ESINKFEMDF--IDEVEKQKELLIKIQHLQQDCDVPSRELRdlklnqnmdlhieeILKDFS-ESEFPSIKTEF 2109
Cdd:TIGR01612 1262 IENEMGiEMDIKAEMETfnISHDDDKDHHIISKKHDENISDIREKSLK--------------IIEDFSeESDINDIKKEL 1327
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2110 QQVLSNRKEMTQFLEEWLNtrfdieklkngiqkendricQVNNFFN----NRIIAIMNESTEFEERSatisKEWEQDLKS 2185
Cdd:TIGR01612 1328 QKNLLDAQKHNSDINLYLN--------------------EIANIYNilklNKIKKIIDEVKEYTKEI----EENNKNIKD 1383
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2186 LKEKNEKLFK------NYQTLKTSLAS---GAQVNPTTQDNK--NPHVTSRATQLTTEKIRELENS-----LHEAKESAM 2249
Cdd:TIGR01612 1384 ELDKSEKLIKkikddiNLEECKSKIEStldDKDIDECIKKIKelKNHILSEESNIDTYFKNADENNenvllLFKNIEMAD 1463
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2250 HKESKIIKMQKElEVTNDI---IAKLQAKVHESNKC-LEKTKETIQVLQDKVALgaKPYKEEIEDLKMKLVKIdlekmkn 2325
Cdd:TIGR01612 1464 NKSQHILKIKKD-NATNDHdfnINELKEHIDKSKGCkDEADKNAKAIEKNKELF--EQYKKDVTELLNKYSAL------- 1533
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2326 akEFEKEISATKATVEyqkEVIRLLREnlrrsqqAQDTSVISEHTDPQPSNKpltcgggsgivqntkaliLKSEHIRLEK 2405
Cdd:TIGR01612 1534 --AIKNKFAKTKKDSE---IIIKEIKD-------AHKKFILEAEKSEQKIKE------------------IKKEKFRIED 1583
|
1210
....*....|...
gi 2217348656 2406 EISKLKQQNEQLI 2418
Cdd:TIGR01612 1584 DAAKNDKSNKAAI 1596
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1186-1688 |
3.79e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 3.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1186 QKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEAtgLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQI 1265
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEE--LEAELEELREELEKLEKLLQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1266 intQDLEKSHTKLQEEIPVLHEEQELLPNVKEvsETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIK 1345
Cdd:COG4717 142 ---AELPERLEELEERLEELRELEEELEELEA--ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1346 SLTKERDNLKTIKEALEVKHdqlkehireTLAKIQESQSKQEQSLNmkekdneTTKIVSEMEQFKPKDSALLRIEIEMLG 1425
Cdd:COG4717 217 EAQEELEELEEELEQLENEL---------EAAALEERLKEARLLLL-------IAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1426 LSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHccLKEQEETINELRVNLSEKET 1505
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE--LLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1506 EISTIQKQleaindKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEI 1585
Cdd:COG4717 359 LEEELQLE------ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1586 QImikekEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEyqflkmtavnetqekmcEIEHLKEQFETQKLNLENIET 1665
Cdd:COG4717 433 EL-----EELEEELEELEEELEELREELAELEAELEQLEEDG-----------------ELAELLQELEELKAELRELAE 490
|
490 500
....*....|....*....|...
gi 2217348656 1666 ENIRLtQILHENLEEMRSVTKER 1688
Cdd:COG4717 491 EWAAL-KLALELLEEAREEYREE 512
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1323-1479 |
3.80e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1323 LARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNettkI 1402
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEA----L 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1403 VSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKS-VAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEEL 1479
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAeLAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1025-1388 |
4.04e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1025 NTQTLTADVKDNEI--IEQQRKIFSLIQEKNELQQM-LESVIAEKEQLKTDLKENIEMtiENQEELRllGDELKKQQEIV 1101
Cdd:pfam17380 261 NGQTMTENEFLNQLlhIVQHQKAVSERQQQEKFEKMeQERLRQEKEEKAREVERRRKL--EEAEKAR--QAEMDRQAAIY 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1102 AQEKNHAIKKEGELSRTcdrlaEVEEKLKEKSQQLqekqqqllnvQEEMSEMQKKINEIENLKNELKNKEltlEHMETEr 1181
Cdd:pfam17380 337 AEQERMAMERERELERI-----RQEERKRELERIR----------QEEIAMEISRMRELERLQMERQQKN---ERVRQE- 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1182 LELAQKLNENYEEVKSITKERKVLKELQKSFETErdhlrgyIREIEATGLQTKEELKIAHIHLK--EHQETIDELRRSVS 1259
Cdd:pfam17380 398 LEAARKVKILEEERQRKIQQQKVEMEQIRAEQEE-------ARQREVRRLEEERAREMERVRLEeqERQQQVERLRQQEE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1260 EKTAQIINtQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQE 1339
Cdd:pfam17380 471 ERKRKKLE-LEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 1340 S----QEEIKSLTKERDNLKTIkealevkhdqlkEHIRETLAKIQESQSKQEQ 1388
Cdd:pfam17380 550 ErrriQEQMRKATEERSRLEAM------------EREREMMRQIVESEKARAE 590
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
873-1468 |
4.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 873 QELQEKTREVQERLNEMEQLKEQLEnrdstLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDI 952
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALR-----LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 953 hdtvnMNIDTQ--EQLRNALESLKQHQETINTlKSKISEEVSRNLHMEENtgETKDEFQQKMVGI----DKKQDLEAKNT 1026
Cdd:COG4913 333 -----RGNGGDrlEQLEREIERLERELEERER-RRARLEALLAALGLPLP--ASAEEFAALRAEAaallEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1027 QTLTAdvKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTienQEELRLLGDELkkqqEIVAQEKN 1106
Cdd:COG4913 405 EALAE--AEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLD---EAELPFVGELI----EVRPEEER 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1107 --HAIkkEGELS--RTC-----DRLAEV-----EEKLKEKsqqlqekqqqllnVQ-EEMSEMQKKINEIENLKNELKNKE 1171
Cdd:COG4913 476 wrGAI--ERVLGgfALTllvppEHYAAAlrwvnRLHLRGR-------------LVyERVRTGLPDPERPRLDPDSLAGKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1172 LTLEHMETERL--ELAQKLN----ENYEEV----KSITKERKVlkelqKSFETERDH-LRGYIREIEATGLQTKEelKIA 1240
Cdd:COG4913 541 DFKPHPFRAWLeaELGRRFDyvcvDSPEELrrhpRAITRAGQV-----KGNGTRHEKdDRRRIRSRYVLGFDNRA--KLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1241 HIhlkehQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSET-QETMNELELLteqstTKD 1319
Cdd:COG4913 614 AL-----EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREiAELEAELERL-----DAS 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1320 STTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLK------------------------EHIRET 1375
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdrleaaedlarlelralleerfaaALGDAV 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1376 LAKIQESQSKQEQSLNmKEKDNETTKIVSEMEQFK---PKDSALLRIEIEMLG----LSKRLQESH-----DEMKSVAKE 1443
Cdd:COG4913 764 ERELRENLEERIDALR-ARLNRAEEELERAMRAFNrewPAETADLDADLESLPeylaLLDRLEEDGlpeyeERFKELLNE 842
|
650 660
....*....|....*....|....*..
gi 2217348656 1444 --KDDLQRLQEVLQSESDQLKENIKEI 1468
Cdd:COG4913 843 nsIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1426-2126 |
5.05e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1426 LSKRLQESHDEMKSVAKEKDDLQRLQEvLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEEtinelRVNLSEKET 1505
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKRE-AQEEQLKKQQLLKQLRARIEELRAQEAV----LEETQE-----RINRARKAA 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1506 EISTIQKQLEAINDKLQNKIQEIYEKEEqfniKQISEVQEKVNELKQFKEHRKAKDS--ALQSIESKMLELTNRLQESQE 1583
Cdd:TIGR00618 294 PLAAHIKAVTQIEQQAQRIHTELQSKMR----SRAKLLMKRAAHVKQQSSIEEQRRLlqTLHSQEIHIRDAHEVATSIRE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1584 EIQIMIKEKEEMKRVQEALQIERDQLKentkeiVAKMKESQEKEYQflkMTAVNETQEKMCEIEHLKEQFETQKLNLENI 1663
Cdd:TIGR00618 370 ISCQQHTLTQHIHTLQQQKTTLTQKLQ------SLCKELDILQREQ---ATIDTRTSAFRDLQGQLAHAKKQQELQQRYA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1664 ETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKvERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGI 1743
Cdd:TIGR00618 441 ELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ-TKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQD 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1744 VSEKTDKLSNMQKdLENSNAKLQEKIQELkanEHQLITLKKDVNETQKKVSEMEQ--LKKQIKDQSLTlskleiENLNLA 1821
Cdd:TIGR00618 520 IDNPGPLTRRMQR-GEQTYAQLETSEEDV---YHQLTSERKQRASLKEQMQEIQQsfSILTQCDNRSK------EDIPNL 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1822 QKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELktARMLSKEHKETVDKLREKISEKTIQI 1901
Cdd:TIGR00618 590 QNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQEL--ALKLTALHALQLTLTQERVREHALSI 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1902 SDIQKDLDKSKDELQKKQDRQNHQVKPEKrllsdgqqhltESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEF 1981
Cdd:TIGR00618 668 RVLPKELLASRQLALQKMQSEKEQLTYWK-----------EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1982 QKELsmrvkANLSLPYLQTKHIEKLftanqrCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEMDFIDEVEKQKELLI 2061
Cdd:TIGR00618 737 REDA-----LNQSLKELMHQARTVL------KARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLE 805
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 2062 KIQHLQQDCDVPSRELRDLKLNQ---NMDLHIEEILKDFSE-----SEFPSIKTEFQQVLSNRKEMTQFLEEW 2126
Cdd:TIGR00618 806 AEIGQEIPSDEDILNLQCETLVQeeeQFLSRLEEKSATLGEithqlLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
880-1211 |
5.67e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 5.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 880 REVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQT-LEEVKTLTQEkddlkqlQESLQIERDQLKSDIHdtvnm 958
Cdd:pfam17380 287 RQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAeMDRQAAIYAE-------QERMAMERERELERIR----- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 959 nidtQEQLRNALESLKQHQetintlkskISEEVSRNLHMEentgETKDEFQQKMVGIdkKQDLEAKNTQTLTADVKDNEI 1038
Cdd:pfam17380 355 ----QEERKRELERIRQEE---------IAMEISRMRELE----RLQMERQQKNERV--RQELEAARKVKILEEERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1039 IEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEElRLLGDELKKQQEIVAQEKNHAIKKEGELSRT 1118
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVE-RLRQQEEERKRKKLELEKEKRDRKRAEEQRR 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1119 cdrlAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERL-ELAQKLNENYEEVKS 1197
Cdd:pfam17380 495 ----KILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIqEQMRKATEERSRLEA 570
|
330
....*....|....
gi 2217348656 1198 ITKERKVLKELQKS 1211
Cdd:pfam17380 571 MEREREMMRQIVES 584
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1297-1968 |
5.88e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 5.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1297 EVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIksltkerdnlktikEALEVKHDQLKEHIRETL 1376
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSEL--------------EALEDQHGAFLDADIETA 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1377 AKIQESQSKQEQSLNMKEKDNE--TTKIVSEMEQFKPKDSAL-LRIEIEMLGLSKRLQESHDEM-KSVAKEKDDLQRLQE 1452
Cdd:pfam12128 343 AADQEQLPSWQSELENLEERLKalTGKHQDVTAKYNRRRSKIkEQNNRDIAGIKDKLAKIREARdRQLAVAEDDLQALES 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1453 VLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQKQLEAINdklqnkiqeiyeke 1532
Cdd:pfam12128 423 ELREQLEAGKLEFNEEEYRLKSRLGELKL----RLNQATATPELLLQLENFDERIERAREEQEAAN-------------- 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1533 eqfnikqiSEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEE--------IQIMIKE----KEEMKRVQE 1600
Cdd:pfam12128 485 --------AEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQlfpqagtlLHFLRKEapdwEQSIGKVIS 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1601 ALQIERDQL-----------KENTKEIVAKMKESQEKEYQFL------KMTAVNET-QEKMCEIEHLKEQFETQKLNLEN 1662
Cdd:pfam12128 557 PELLHRTDLdpevwdgsvggELNLYGVKLDLKRIDVPEWAASeeelreRLDKAEEAlQSAREKQAAAEEQLVQANGELEK 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1663 IETENIRLTQILHENLEEMRSVTKERDDL-RSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQ-----QET 1736
Cdd:pfam12128 637 ASREETFARTALKNARLDLRRLFDEKQSEkDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQkrearTEK 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1737 IDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITlKKDVNETQkkvseMEQLKKQIKDQSLTLSKLEIE 1816
Cdd:pfam12128 717 QAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLA-SLGVDPDV-----IAKLKREIRTLERKIERIAVR 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1817 NLNLAQkLHENLEEMKSVMKER--DNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKI 1894
Cdd:pfam12128 791 RQEVLR-YFDWYQETWLQRRPRlaTQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM 869
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348656 1895 SektiQISDIQkdLDKSKDELQKKQDRQNHQVKPEKRLLsdgqQHLTESLREKCSRIKELL--KRYSEMDDHYECL 1968
Cdd:pfam12128 870 S----KLATLK--EDANSEQAQGSIGERLAQLEDLKLKR----DYLSESVKKYVEHFKNVIadHSGSGLAETWESL 935
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1757-2332 |
6.60e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 6.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1757 DLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMK 1836
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1837 ERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETvdklrEKISEKTIQISDIQKDLDKSKDELQ 1916
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL-----KEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1917 KKQDRQNHQVKPEKRLLSDgqqhltesLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKELSmRVKANLSLp 1996
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKE--------LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE-RLKKRLTG- 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1997 yLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFE----------------------MDFIDEVE 2054
Cdd:PRK03918 384 -LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteehrkellEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2055 KQKELLIKIQHLQQDCDVPSRELRDLKLNQNMDLHIEEILKDFSESEFPSIKTEFQQVLSNRKEMTQFLEEWLNTRFDIE 2134
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2135 KLKNGIQKENDricqvnnfFNNRIIAIMNESTEFEERSATISKEWE-------QDLKSLKEKNEKLFKNYQTLKTSLASG 2207
Cdd:PRK03918 543 SLKKELEKLEE--------LKKKLAELEKKLDELEEELAELLKELEelgfesvEELEERLKELEPFYNEYLELKDAEKEL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2208 AQVNPTTQDNKNPHVTSRAT-QLTTEKIRELENSLHEAKESAMHKESKiiKMQKELEVTNDIIAKLQAKVHESNKCLEKT 2286
Cdd:PRK03918 615 EREEKELKKLEEELDKAFEElAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRREEI 692
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2217348656 2287 KETIQVLQDKVAlGAKPYKEEIEDLKMKLVKID--LEKMKNAKEFEKE 2332
Cdd:PRK03918 693 KKTLEKLKEELE-EREKAKKELEKLEKALERVEelREKVKKYKALLKE 739
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
685-1212 |
6.84e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.36 E-value: 6.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 685 DLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQ 764
Cdd:PRK01156 187 YLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 765 DKSEELHIITSEKDKLF----SEVVHKESRVQGL------------------------------LEEIGKTKDDLATTQS 810
Cdd:PRK01156 267 MELEKNNYYKELEERHMkiinDPVYKNRNYINDYfkykndienkkqilsnidaeinkyhaiikkLSVLQKDYNDYIKKKS 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 811 NYKSTDQEFQNFKTLHMDF-------EQKYKMVLEEN---ERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTR 880
Cdd:PRK01156 347 RYDDLNNQILELEGYEMDYnsylksiESLKKKIEEYSkniERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVS 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 881 EVQERLNEMEQLKEQLENRDSTL----------------------QTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQ 938
Cdd:PRK01156 427 SLNQRIRALRENLDELSRNMEMLngqsvcpvcgttlgeeksnhiiNHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRK 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 939 ESLQIERdqlksdihdtVNMNIDTQEQLRNALESLKQHQETINTLKSKiseevsrnlhmeentgETKDEFQQKMVGIDKK 1018
Cdd:PRK01156 507 EYLESEE----------INKSINEYNKIESARADLEDIKIKINELKDK----------------HDKYEEIKNRYKSLKL 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1019 QDLEAKNTQTLTAD-VKDNEIIEQQRKIFSLIQEK-NELQQMLESVIAEKEQLKTDLKENIEmtiENQEELRLLGDELKK 1096
Cdd:PRK01156 561 EDLDSKRTSWLNALaVISLIDIETNRSRSNEIKKQlNDLESRLQEIEIGFPDDKSYIDKSIR---EIENEANNLNNKYNE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1097 QQEIVAQEKnhaikkegELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEH 1176
Cdd:PRK01156 638 IQENKILIE--------KLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT 709
|
570 580 590
....*....|....*....|....*....|....*.
gi 2217348656 1177 METERLELAQKLNENYEEVKSITKERKVLKELQKSF 1212
Cdd:PRK01156 710 RINELSDRINDINETLESMKKIKKAIGDLKRLREAF 745
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
543-802 |
7.60e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.00 E-value: 7.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 543 KTKKDQEMQLIHEIsnlkNLVkHAEVYNQDLENE-----------LSSKVELLR---EKEDQIKKLQEYIDSQKLENIKM 608
Cdd:PRK05771 15 KSYKDEVLEALHEL----GVV-HIEDLKEELSNErlrklrslltkLSEALDKLRsylPKLNPLREEKKKVSVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 609 DLSYSLESIEDpkqmkqtlfdaetvaldakresaflrsenlELKEKMKELattyKQMENDIQLYQSQLEAKKKMQ---VD 685
Cdd:PRK05771 90 DVEEELEKIEK------------------------------EIKELEEEI----SELENEIKELEQEIERLEPWGnfdLD 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 686 LEKELQSafneitKLTSLIDGKVPKDLLCNLELEGKIT--------------------DLQKELNKEVEENEALREEV-- 743
Cdd:PRK05771 136 LSLLLGF------KYVSVFVGTVPEDKLEELKLESDVEnveyistdkgyvyvvvvvlkELSDEVEEELKKLGFERLELee 209
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 744 ---------ILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESrvqgLLEEIGKTK 802
Cdd:PRK05771 210 egtpselirEIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAE----ALSKFLKTD 273
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1520-2115 |
7.69e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 7.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1520 KLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQ 1599
Cdd:pfam05483 78 RLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLC 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1600 EALQIERDQLKENTKEIvakmkESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENirltqilHENLE 1679
Cdd:pfam05483 158 NLLKETCARSAEKTKKY-----EYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKED-------HEKIQ 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1680 EMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLkiqEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSnmqKDLE 1759
Cdd:pfam05483 226 HLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLL---EESRDKANQLEEKTKLQDENLKELIEKKDHLT---KELE 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1760 NSNAKLQEKIQELKANEHQL-ITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHenleemksvmKER 1838
Cdd:pfam05483 300 DIKMSLQRSMSTQKALEEDLqIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLR----------TEQ 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1839 DNLRRVEETLKLERDQLKEslqetKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQ-- 1916
Cdd:pfam05483 370 QRLEKNEDQLKIITMELQK-----KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIfl 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1917 -KKQDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHyecLNRLSLDLEKEIEFQKELSMRVKA---- 1991
Cdd:pfam05483 445 lQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAH---CDKLLLENKELTQEASDMTLELKKhqed 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1992 ---NLSLPYLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEMDFIDEVEKQKELLIKIQHLQQ 2068
Cdd:pfam05483 522 iinCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKK 601
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348656 2069 DCDVPSRELRDLKLN----------QNMDLHIEEILKDFSESEFPSIKTEFQQVLSN 2115
Cdd:pfam05483 602 QIENKNKNIEELHQEnkalkkkgsaENKQLNAYEIKVNKLELELASAKQKFEEIIDN 658
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1428-1629 |
8.07e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.52 E-value: 8.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1428 KRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEI 1507
Cdd:COG3883 23 KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1508 STIQ---------------KQLEAINDKLQNKIQEIYEKEEQFNIKQiSEVQEKVNELKQFK----EHRKAKDSALQSIE 1568
Cdd:COG3883 103 SYLDvllgsesfsdfldrlSALSKIADADADLLEELKADKAELEAKK-AELEAKLAELEALKaeleAAKAELEAQQAEQE 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348656 1569 SKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQ 1629
Cdd:COG3883 182 ALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
576-973 |
1.05e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 576 ELSSKVELLREKEDQIKKLQEYIDSqklenikmdLSYSLESIEDpkqmKQTLFDAETVALDAKRESAFLRSENLELKEKM 655
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEE---------LEEELEELEA----ELEELREELEKLEKLLQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 656 KELATTYKQMENDIQLYQSQLEAKKKMQVDLEkELQSAFNEITKLTSLIDGKVPKDLLCNLE-LEGKITDLQKELNKEVE 734
Cdd:COG4717 142 AELPERLEELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLATEEELQDLAEELEeLQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 735 ENEALREEVILLSELKSLPSEVERLRKEIQDKSEE--LHIITSEKDKLFSEVVH---------------------KESRV 791
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERLKEARLLLLIAaaLLALLGLGGSLLSLILTiagvlflvlgllallflllarEKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 792 QGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQ------KFDSSLGALK 865
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQleeleqEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 866 TELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTL--ITEKLQQTLEEVKTLTQEKDDLKQLQESLQI 943
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEeeLEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430
....*....|....*....|....*....|
gi 2217348656 944 ERDQLKSDihDTVNMNIDTQEQLRNALESL 973
Cdd:COG4717 461 ELEQLEED--GELAELLQELEELKAELREL 488
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1646-2365 |
1.07e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1646 IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDdlrsveetlKVERDQ-LKENLRETitrdlkiqeELR 1724
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAE---------KAERYKeLKAELREL---------ELA 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1725 IAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIK 1804
Cdd:TIGR02168 229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1805 DQ----SLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLS 1880
Cdd:TIGR02168 309 ERlanlERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1881 KEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSE 1960
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1961 MDDHYECLNRLSLDLEKEIEFQKELSMRVKANLSLPYlqtKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHE 2040
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS---EGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGG 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2041 SINKFEMDFIDEVEKQkellikIQHLQQdcdVPSRELRDLKLNQNMDLHIEeilkdFSESEFPSIKTEFQQVLSNRKEMT 2120
Cdd:TIGR02168 546 RLQAVVVENLNAAKKA------IAFLKQ---NELGRVTFLPLDSIKGTEIQ-----GNDREILKNIEGFLGVAKDLVKFD 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2121 QFLEEWLNTRFD----IEKLKNGIQ-----KENDRICQVNNFFNNRIIAIMNESTEFE----ERSATIsKEWEQDLKSLK 2187
Cdd:TIGR02168 612 PKLRKALSYLLGgvlvVDDLDNALElakklRPGYRIVTLDGDLVRPGGVITGGSAKTNssilERRREI-EELEEKIEELE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2188 EKNEKLFKNYQTLKTSLA--------------------SGAQVNPTTQDNKNPHVTSRATQL-------------TTEKI 2234
Cdd:TIGR02168 691 EKIAELEKALAELRKELEeleeeleqlrkeleelsrqiSALRKDLARLEAEVEQLEERIAQLskelteleaeieeLEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2235 RELENSLHEAKESAMHKESKIIKMQKELEVTNDIIAKLQAKVHESNKCLEKTKETIQVLQDKVALGAKPY---KEEIEDL 2311
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLedlEEQIEEL 850
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 2217348656 2312 KMKLVKIDLEkMKNAKEFEKEISATKATVEYQKEVIRLLRENLRRSQQAQDTSV 2365
Cdd:TIGR02168 851 SEDIESLAAE-IEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
859-1116 |
1.14e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 859 SSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTverektlITEKLQQTLEEVKTLTQEKDDLKQLQ 938
Cdd:COG3883 2 LALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEE-------LNEEYNELQAELEALQAEIDKLQAEI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 939 ESLQIERDQLksdihdtvnmnidtQEQLRNALESLKQHQETINTLKSKISeevSRNLhmeentgetkDEFQQKMVGIDKK 1018
Cdd:COG3883 75 AEAEAEIEER--------------REELGERARALYRSGGSVSYLDVLLG---SESF----------SDFLDRLSALSKI 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1019 QDLEAKNTQTLTADVKDNE-----IIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDE 1093
Cdd:COG3883 128 ADADADLLEELKADKAELEakkaeLEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
|
250 260
....*....|....*....|...
gi 2217348656 1094 LKKQQEIVAQEKNHAIKKEGELS 1116
Cdd:COG3883 208 AEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1278-1915 |
1.17e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.51 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1278 LQEEIPVLHEEQELLP-NVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKT 1356
Cdd:pfam10174 58 LKEQYRVTQEENQHLQlTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1357 IKEALEVKHDQLKEHIRETLAKIQE----SQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQE 1432
Cdd:pfam10174 138 TLEEMELRIETQKQTLGARDESIKKllemLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHR 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1433 SHDEMKSVAKEK-------------DDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVN 1499
Cdd:pfam10174 218 RNQLQPDPAKTKalqtviemkdtkiSSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1500 LSEKETEISTIQKQLEAINDklqnkiqeiyekeEQFNIKQISEVqekvnelkqFKEHRKAKDSALQSIESKMLELTNRLQ 1579
Cdd:pfam10174 298 LSKKESELLALQTKLETLTN-------------QNSDCKQHIEV---------LKESLTAKEQRAAILQTEVDALRLRLE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1580 ESQeeiQIMIKEKEEMKRVQEAlqierdqlKENTKEIVAKMKESQEkeyqfLKMTAVNETQEKmceIEHLKEQFETQKLN 1659
Cdd:pfam10174 356 EKE---SFLNKKTKQLQDLTEE--------KSTLAGEIRDLKDMLD-----VKERKINVLQKK---IENLQEQLRDKDKQ 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1660 LENietenirltqiLHENLEEMRSVTKERDD-LRSVEETLKvERDQLKENLRETITR-DLKIQEELRIAHMHLKEQQETI 1737
Cdd:pfam10174 417 LAG-----------LKERVKSLQTDSSNTDTaLTTLEEALS-EKERIIERLKEQREReDRERLEELESLKKENKDLKEKV 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1738 DKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQ---KKVSEMEQLKKQIKDQSLTLSKLE 1814
Cdd:pfam10174 485 SALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLEnqlKKAHNAEEAVRTNPEINDRIRLLE 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1815 IE---NLNLAQKLHENLEEMKSVMKERDNL-----RRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKET 1886
Cdd:pfam10174 565 QEvarYKEESGKAQAEVERLLGILREVENEkndkdKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRR 644
|
650 660
....*....|....*....|....*....
gi 2217348656 1887 VDKLREKISEKtiQISDIQKDLDKSKDEL 1915
Cdd:pfam10174 645 EDNLADNSQQL--QLEELMGALEKTRQEL 671
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1677-1962 |
1.22e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.77 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1677 NLEEMRSVTKERDDLRSVEETLkverdqlkENLRETITRDLKIQEELRIAHMHLKEqqETIDKLrgivsEKTDKLSNMQK 1756
Cdd:COG5022 798 KLQPLLSLLGSRKEYRSYLACI--------IKLQKTIKREKKLRETEEVEFSLKAE--VLIQKF-----GRSLKAKKRFS 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1757 DLENSNAKLQEKiQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLaqkLHENLEEMKSVMK 1836
Cdd:COG5022 863 LLKKETIYLQSA-QRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKKLLN 938
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1837 ERDNlrRVEETLKLERDQLKESLQETKARdleIQQELKTARMLSKEHKETVDKLREKISEktiqisdiqkdLDKSKDELQ 1916
Cdd:COG5022 939 NIDL--EEGPSIEYVKLPELNKLHEVESK---LKETSEEYEDLLKKSTILVREGNKANSE-----------LKNFKKELA 1002
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2217348656 1917 KKQDRQNHQVKPEKRLlsdgqqhltESLREKCSRIKELLKRYSEMD 1962
Cdd:COG5022 1003 ELSKQYGALQESTKQL---------KELPVEVAELQSASKIISSES 1039
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1764-1917 |
1.32e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1764 KLQEKIQELKANEHQLITLKKDVNETQKKV----SEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVM--KE 1837
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELaaleARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1838 RDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARmlsKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQK 1917
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELE---AELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1761-1986 |
1.41e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1761 SNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEmeqLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDN 1840
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKA---LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1841 LRRVEETLKLERDQLKESLQETKARD-----LEIQQELKTARMLS--KEHKETVDKLREKISEKTIQISDIQKDLDKSKD 1913
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPplallLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 1914 ELQKKQDRQnhqvKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKELS 1986
Cdd:COG4942 175 ELEALLAEL----EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
837-1515 |
1.45e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 837 LEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLkeQLENRDSTL---QTVEREKTLI 913
Cdd:pfam05483 70 FENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQEL--QFENEKVSLkleEEIQENKDLI 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 914 TEK-----LQQTLEEVKTLTQEKDDLKQLQESlqiERDQLKSDIHDTVNMNIDTQEQLRNALES--------LKQHQETI 980
Cdd:pfam05483 148 KENnatrhLCNLLKETCARSAEKTKKYEYERE---ETRQVYMDLNNNIEKMILAFEELRVQAENarlemhfkLKEDHEKI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 981 NTLKSKISEEVSRN--------LHMEENTGETKDEFQQKMVGIDKKQDLEAKntqTLTADVKDNEIIEQQRKIFSLIQE- 1051
Cdd:pfam05483 225 QHLEEEYKKEINDKekqvslllIQITEKENKMKDLTFLLEESRDKANQLEEK---TKLQDENLKELIEKKDHLTKELEDi 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1052 KNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLK- 1130
Cdd:pfam05483 302 KMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKi 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1131 ------EKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKV 1204
Cdd:pfam05483 382 itmelqKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTA 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1205 LKELQKSFETERDHLRG-----YIREIEATG------LQTKE---ELKIAHIHLKEHQETIDELRRSVSEKTAQIintQD 1270
Cdd:pfam05483 462 IKTSEEHYLKEVEDLKTelekeKLKNIELTAhcdkllLENKEltqEASDMTLELKKHQEDIINCKKQEERMLKQI---EN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1271 LEKSHTKLQEEIPVLHEE-----QELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIK 1345
Cdd:pfam05483 539 LEEKEMNLRDELESVREEfiqkgDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENK 618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1346 SLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNEttKIVSEMEQFKPKDSALLRIEIEmlg 1425
Cdd:pfam05483 619 ALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEE--KLLEEVEKAKAIADEAVKLQKE--- 693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1426 LSKRLQESHDEMKSvakekddlqrLQEVLQSESDQLKEnikeivakhlETEEELKVAHCCLKEQEETINELRVNLSEKET 1505
Cdd:pfam05483 694 IDKRCQHKIAEMVA----------LMEKHKHQYDKIIE----------ERDSELGLYKNKEQEQSSAKAALEIELSNIKA 753
|
730
....*....|
gi 2217348656 1506 EISTIQKQLE 1515
Cdd:pfam05483 754 ELLSLKKQLE 763
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
837-1216 |
1.62e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 837 LEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQ--EKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLIT 914
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEklEKLLQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 915 EKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNmniDTQEQLRNALESLKQHQETINTLKSKIS--EEVS 992
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE---ELQQRLAELEEELEEAQEELEELEEELEqlENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 993 RNLHMEENTGETK---------------------------------------------------DEFQQKMVGIDKKQDL 1021
Cdd:COG4717 237 EAAALEERLKEARlllliaaallallglggsllsliltiagvlflvlgllallflllarekaslGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1022 EAKNTQTLTADVKDNEIIEQQRkIFSLIQEKNELQQMLESVIAEKEQLKTDLKEN------IEMTIENQEELRLLGDELK 1095
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEE-LLELLDRIEELQELLREAEELEEELQLEELEQeiaallAEAGVEDEEELRAALEQAE 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1096 KQQEIVAQEKNHAIKKEGELSRTCDRLAEV-EEKLKEKsqqLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKElTL 1174
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALdEEELEEE---LEELEEELEELEEELEELREELAELEAELEQLEEDG-EL 471
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 2217348656 1175 EHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETER 1216
Cdd:COG4717 472 AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1564-1724 |
1.92e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1564 LQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQE--KEYQFLKMTAVNETqe 1641
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEAriKKYEEQLGNVRNNK-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1642 kmcEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQE 1721
Cdd:COG1579 90 ---EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
...
gi 2217348656 1722 ELR 1724
Cdd:COG1579 167 ELA 169
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
721-931 |
1.93e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 721 KITDLQKELNKEVEENEALREEVI-LLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIG 799
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAaLKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 800 KTKDDLAT-TQSNYKSTDQEFQNFKTLHMDFEQKYKM------VLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKT 872
Cdd:COG4942 101 AQKEELAElLRALYRLGRQPPLALLLSPEDFLDAVRRlqylkyLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348656 873 QELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEK 931
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
514-949 |
1.93e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.66 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 514 YEQLRTEKEEMELKLK------EKNDLDEFEALERKTKKDQEMQ----LIHEISNLKNLVKHAEV-YNQDLENELSSKVE 582
Cdd:pfam05557 11 LSQLQNEKKQMELEHKrarielEKKASALKRQLDRESDRNQELQkrirLLEKREAEAEEALREQAeLNRLKKKYLEALNK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 583 LLREKEDQIKKLQEYIDS---------QKLENIKMDLSYSLESIEDPKQMKQTlfdaetvaLDAKRESAFLRSENLELKE 653
Cdd:pfam05557 91 KLNEKESQLADAREVISClknelselrRQIQRAELELQSTNSELEELQERLDL--------LKAKASEAEQLRQNLEKQQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 654 K-MKELATTYKQMENDIQLYQSQLEAKKKMQV------DLEKELQSAFNEITKLTSLIDGkvpkdllcNLELEGKITDLQ 726
Cdd:pfam05557 163 SsLAEAEQRIKELEFEIQSQEQDSEIVKNSKSelaripELEKELERLREHNKHLNENIEN--------KLLLKEEVEDLK 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 727 KELNKEveenEALREEVILLS-ELKSLPSEVERLRKEIQDKSEELhiitSEKDKLFSEVVHKESRVQGLLEEIGKTKDDL 805
Cdd:pfam05557 235 RKLERE----EKYREEAATLElEKEKLEQELQSWVKLAQDTGLNL----RSPEDLSRRIEQLQQREIVLKEENSSLTSSA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 806 ATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKE-------AQKFDSSLGALKT--ELSYKTQELQ 876
Cdd:pfam05557 307 RQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKErdgyraiLESYDKELTMSNYspQLLERIEEAE 386
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348656 877 EKTREVQERLNEME----QLKEQLENRDSTLQTVEREKTLIteKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLK 949
Cdd:pfam05557 387 DMTQKMQAHNEEMEaqlsVAEEELGGYKQQAQTLERELQAL--RQQESLADPSYSKEEVDSLRRKLETLELERQRLR 461
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
515-743 |
2.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 515 EQLRTEKEEMELKLKEKNDldefealERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKL 594
Cdd:COG4942 23 AEAEAELEQLQQEIAELEK-------ELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 595 QEYIDSQKLENIKMDLSYSLESIEDPKQMkqtLFDAETvALDAKRESAFLRSENLELKEKMKELATTYKQME---NDIQL 671
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLAL---LLSPED-FLDAVRRLQYLKYLAPARREQAEELRADLAELAalrAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348656 672 YQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEV 743
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1430-1594 |
2.32e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1430 LQESHDEMKSVAKEKddlqrLQEVlQSESDQLKEnikeivakhlETEEELKVAHCCLKEQEETINELRVNLSEKETEIST 1509
Cdd:PRK12704 44 LEEAKKEAEAIKKEA-----LLEA-KEEIHKLRN----------EFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1510 IQKQLEAINDKLQNKIQEIYEKEEqfnikqisEVQEKVNELKQFKEHRkakdSALQSIESKMLELTNRLQESQEEIQIMI 1589
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEE--------ELEELIEEQLQELERI----SGLTAEEAKEILLEKVEEEARHEAAVLI 175
|
....*
gi 2217348656 1590 KEKEE 1594
Cdd:PRK12704 176 KEIEE 180
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
820-1228 |
2.76e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.27 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 820 QNFKTLHMDFEQKYKMVLEENE---RMNQEIVNLSKEAQKFDSSLGALKTELsyktQELQEKTREVQERLNEMEQLKEQL 896
Cdd:pfam05557 83 KYLEALNKKLNEKESQLADAREvisCLKNELSELRRQIQRAELELQSTNSEL----EELQERLDLLKAKASEAEQLRQNL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 897 ENRDSTLQTVE-REKTLITEKLQQT--LEEVKTLTQEK---DDLKQLQESLQIERDQLKSDIHD---------------- 954
Cdd:pfam05557 159 EKQQSSLAEAEqRIKELEFEIQSQEqdSEIVKNSKSELariPELEKELERLREHNKHLNENIENklllkeevedlkrkle 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 955 ----------TVNMNIDTQEQLRNALESLKQ-HQETINT---LKSKISEEVSRNL-HMEENTGETKDEFQQKMVGIDKKQ 1019
Cdd:pfam05557 239 reekyreeaaTLELEKEKLEQELQSWVKLAQdTGLNLRSpedLSRRIEQLQQREIvLKEENSSLTSSARQLEKARRELEQ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1020 DLEAKNTQTLTADVKDNEIIEQ----QRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENiemtienqEELRLLGDELK 1095
Cdd:pfam05557 319 ELAQYLKKIEDLNKKLKRHKALvrrlQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLL--------ERIEEAEDMTQ 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1096 KQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNvqEEMSEMQKKINEIENLKNELKNKELTLE 1175
Cdd:pfam05557 391 KMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSK--EEVDSLRRKLETLELERQRLREQKNELE 468
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1176 hMETERLELAQKLNENYEEV-----KSITKERKVLKELQKSFETERDHLRGYIREIEA 1228
Cdd:pfam05557 469 -MELERRCLQGDYDPKKTKVlhlsmNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLED 525
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1146-1362 |
2.82e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1146 VQEEMSEMQKKIN----EIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKErkvLKELQKSFETERDHLRG 1221
Cdd:COG4942 32 LQQEIAELEKELAalkkEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE---IAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1222 YIREIEATGLQTKEELKIahihlkeHQETIDELRRSVsektaqiintQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSET 1301
Cdd:COG4942 109 LLRALYRLGRQPPLALLL-------SPEDFLDAVRRL----------QYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 1302 QETMNElELLTEQSTTKDSTTLARIEMERL--RLNEKFQESQEEIKSLTKERDNLKTIKEALE 1362
Cdd:COG4942 172 ERAELE-ALLAELEEERAALEALKAERQKLlaRLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1278-1630 |
3.02e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.27 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1278 LQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIE-MERLRLNEKFQESQEEIKSLTKERDNLKT 1356
Cdd:pfam17380 245 LAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEkMEQERLRQEKEEKAREVERRRKLEEAEKA 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1357 IKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKpkdsALLRIEIEMLGLSKRLQESHDE 1436
Cdd:pfam17380 325 RQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMR----ELERLQMERQQKNERVRQELEA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1437 MKSVAKEKDDLQRLQEVLQSESDQLK---ENIKEIVAKHLETEEElkvahcclKEQEetinelRVNLSEKETeistiQKQ 1513
Cdd:pfam17380 401 ARKVKILEEERQRKIQQQKVEMEQIRaeqEEARQREVRRLEEERA--------REME------RVRLEEQER-----QQQ 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1514 LEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKA---KDSALQSIESKMLELTNRLQESQ-----EEI 1585
Cdd:pfam17380 462 VERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAmieEERKRKLLEKEMEERQKAIYEEErrreaEEE 541
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1586 QIMIKEKEEMKRVQEALQI---ERDQLK--ENTKEIVAKMKESQEKEYQF 1630
Cdd:pfam17380 542 RRKQQEMEERRRIQEQMRKateERSRLEamEREREMMRQIVESEKARAEY 591
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
935-1545 |
3.08e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.43 E-value: 3.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 935 KQLQESLQIER-----DQLKsDIHDTVNMNIDTQEQLRNALESlkqHQETINTLKSKISEEVSRNLHMEENTGETKDEFQ 1009
Cdd:PRK01156 153 KILDEILEINSlernyDKLK-DVIDMLRAEISNIDYLEEKLKS---SNLELENIKKQIADDEKSHSITLKEIERLSIEYN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1010 QKMVGIDK-KQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESViaeKEQLKTDLKENIEMTIENQEELR 1088
Cdd:PRK01156 229 NAMDDYNNlKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERH---MKIINDPVYKNRNYINDYFKYKN 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1089 LLGDELKKQQEIVAQeknhaIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELK 1168
Cdd:PRK01156 306 DIENKKQILSNIDAE-----INKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1169 NKELTLEHMETERLELAQKLNENYEEVKSITKE-RKVLKELQ---KSFETERDHLRGYIREIE--ATGLQTKEELKIAHI 1242
Cdd:PRK01156 381 EYSKNIERMSAFISEILKIQEIDPDAIKKELNEiNVKLQDISskvSSLNQRIRALRENLDELSrnMEMLNGQSVCPVCGT 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1243 HLKEhqETIDELRRSVSEKTAQIINTQD-LEKSHTKLQEEIPVLHEEQELLpNVKEVSETQETMNELELLtEQSTTKDST 1321
Cdd:PRK01156 461 TLGE--EKSNHIINHYNEKKSRLEEKIReIEIEVKDIDEKIVDLKKRKEYL-ESEEINKSINEYNKIESA-RADLEDIKI 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1322 TLARIEMERLrlneKFQESQEEIKSLTKERDNLKtikealevKHDQLKEHIRETLAKIQESQS-KQEQSLNMKEKDNETT 1400
Cdd:PRK01156 537 KINELKDKHD----KYEEIKNRYKSLKLEDLDSK--------RTSWLNALAVISLIDIETNRSrSNEIKKQLNDLESRLQ 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1401 KIVSEMEQFKP-KDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLqSESDQLKENIKEIVAKHLETEEEl 1479
Cdd:PRK01156 605 EIEIGFPDDKSyIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQI-AEIDSIIPDLKEITSRINDIEDN- 682
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348656 1480 kvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLqNKIQEIYEKEEQFnIKQISEVQE 1545
Cdd:PRK01156 683 ------LKKSRKALDDAKANRARLESTIEILRTRINELSDRI-NDINETLESMKKI-KKAIGDLKR 740
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1763-1946 |
3.61e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1763 AKLQEKIQELKAnehqlitLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLeienlnlaQKLHENLEEMKSVMKERDNLR 1842
Cdd:COG4913 610 AKLAALEAELAE-------LEEELAEAEERLEALEAELDALQERREALQRL--------AEYSWDEIDVASAEREIAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1843 RVEETLKLERDQLKeslqetkardlEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQ 1922
Cdd:COG4913 675 AELERLDASSDDLA-----------ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
170 180
....*....|....*....|....*.
gi 2217348656 1923 NHQVKP--EKRLLSDGQQHLTESLRE 1946
Cdd:COG4913 744 RLELRAllEERFAAALGDAVERELRE 769
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
720-1321 |
3.73e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 720 GKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLfSEVV--HKESRvqgllEE 797
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEA-DEVLeeHEERR-----EE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 798 IGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQE 877
Cdd:PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 878 KTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDqlksdihdtvn 957
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG----------- 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 958 mniDTQEQLRNALESLKQHQETINTLKSKISeEVSRNLHMEENTGETKDEFqqkmvgidkkqdLEAKNTQTLTADVKDNE 1037
Cdd:PRK02224 402 ---DAPVDLGNAEDFLEELREERDELREREA-ELEATLRTARERVEEAEAL------------LEAGKCPECGQPVEGSP 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1038 I---IEQQRkifsliQEKNELQQMLESVIAEKEQLKTDLkENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGE 1114
Cdd:PRK02224 466 HvetIEEDR------ERVEELEAELEDLEEEVEEVEERL-ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRER 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1115 LSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELknkeltlehmetERLELAQKLNENYEE 1194
Cdd:PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL------------ERIRTLLAAIADAED 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1195 vkSITKERKVLKELQKSFETERDHL---RGYIREIEATGLQTK-EELKIAHIHLKEHQETIDElrrsvsektaqiiNTQD 1270
Cdd:PRK02224 607 --EIERLREKREALAELNDERRERLaekRERKRELEAEFDEARiEEAREDKERAEEYLEQVEE-------------KLDE 671
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 2217348656 1271 LEKSHTKLQEEIPVLHEEQELLPNVKEVSET-QETMNELELLTEQSTTKDST 1321
Cdd:PRK02224 672 LREERDDLQAEIGAVENELEELEELRERREAlENRVEALEALYDEAEELESM 723
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1537-2333 |
3.99e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1537 IKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMikeKEEMKRVQEALQIERDQLKENTKEI 1616
Cdd:TIGR04523 29 NKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKIL---EQQIKDLNDKLKKNKDKINKLNSDL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1617 VAKMKESQEKEYQFLKmtavnetqeKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEE 1696
Cdd:TIGR04523 106 SKINSEIKNDKEQKNK---------LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELN 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1697 TLKVERDQLKENLRETITRDLKIQEELRIahmhLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANE 1776
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKLLKLELLLSN----LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1777 HQLITLK----KDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENL-EEMKSVMKERDNLRRVEET---- 1847
Cdd:TIGR04523 253 TQLNQLKdeqnKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWnKELKSELKNQEKKLEEIQNqisq 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1848 -------LKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKsKDELQKKQD 1920
Cdd:TIGR04523 333 nnkiisqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQN-QEKLNQQKD 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1921 RQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKELSMRVKANLSlpylqt 2000
Cdd:TIGR04523 412 EQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE------ 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2001 khieklftanqrcsmefhRIMKKLKYVLSYVTKIKEEQHESINKFEmdfiDEVEKQKELLIKIQHLQQDCDVPSRELRDL 2080
Cdd:TIGR04523 486 ------------------QKQKELKSKEKELKKLNEEKKELEEKVK----DLTKKISSLKEKIEKLESEKKEKESKISDL 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2081 KlnqnmdlhiEEILKDFSESEFPSIKTEFQQVLSNRKEMTQFLEEWLNTRFDIEKLKNGIQKENDRIcqvnnffnnriia 2160
Cdd:TIGR04523 544 E---------DELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL------------- 601
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2161 imneSTEFEERSATISkEWEQDLKSLKEKNEKLFKNYQTLKTSLasgaqvnpttqdnknphvtsratqlttEKIRELENS 2240
Cdd:TIGR04523 602 ----IKEIEEKEKKIS-SLEKELEKAKKENEKLSSIIKNIKSKK---------------------------NKLKQEVKQ 649
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2241 LHEAKESAMHKESKIIKMQKELEVTNDIIAKLQAKvHESNKCLEKTKETIQVLQDKVALGAKPYKEEIEDLKMKLVKIDL 2320
Cdd:TIGR04523 650 IKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKD-WLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSK 728
|
810
....*....|...
gi 2217348656 2321 EKMKNAKEFEKEI 2333
Cdd:TIGR04523 729 ELENIIKNFNKKF 741
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
895-1118 |
4.45e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 895 QLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIhDTVNMNIDT-QEQLRNALESL 973
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI-AEAEAEIEErREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 974 KQHQETINTLKSKISeevSRNLhmeentgetkDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEiieqqrkifsliQEKN 1053
Cdd:COG3883 96 YRSGGSVSYLDVLLG---SESF----------SDFLDRLSALSKIADADADLLEELKADKAELE------------AKKA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348656 1054 ELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT 1118
Cdd:COG3883 151 ELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1425-1554 |
4.66e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 45.01 E-value: 4.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1425 GLSKRLQESHDEMKS-----------VAKEKDDLQRLQEVLQSESDQLKENIKEIVAKhleTEEELKVAHCCLKEQEETI 1493
Cdd:smart00787 144 GLKEGLDENLEGLKEdykllmkelelLNSIKPKLRDRKDALEEELRQLKQLEDELEDC---DPTELDRAKEKLKKLLQEI 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348656 1494 NELRVNLSEKETEISTIQKQLEAINDKLQ------NKIQEIYEKEEQFNIKQISEVQEKVNELKQFK 1554
Cdd:smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSelnteiAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLT 287
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
916-1651 |
5.20e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.84 E-value: 5.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 916 KLQQTLEEVKTLTQEKDDLKQLQESlqierdqlksDIHDTVNMNIDTQEQLRNAL--ESLKQHQETINTLKSKISEEVSR 993
Cdd:COG5022 763 RYLQALKRIKKIQVIQHGFRLRRLV----------DYELKWRLFIKLQPLLSLLGsrKEYRSYLACIIKLQKTIKREKKL 832
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 994 NLHMEENTGETKDEFQQKMVgidkkqdlEAKNTQTLTADVKDNEIIEQQRKIFSLIQEK-NELQQMLESVIAEKEQLKTD 1072
Cdd:COG5022 833 RETEEVEFSLKAEVLIQKFG--------RSLKAKKRFSLLKKETIYLQSAQRVELAERQlQELKIDVKSISSLKLVNLEL 904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1073 LKENIEMTIENQEELRLlgdELKKQQEIVAQEKNHAIKKEGELSRTCDRlaeveEKLKEKsqqlqekqqqlLNVQEEMSE 1152
Cdd:COG5022 905 ESEIIELKKSLSSDLIE---NLEFKTELIARLKKLLNNIDLEEGPSIEY-----VKLPEL-----------NKLHEVESK 965
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1153 MQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKElqksfeterdhlrgyiREIEATGLQ 1232
Cdd:COG5022 966 LKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKE----------------LPVEVAELQ 1029
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1233 TkEELKIAHIHLKEHQET-IDELRRsvsektaqiintqDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQET----MNE 1307
Cdd:COG5022 1030 S-ASKIISSESTELSILKpLQKLKG-------------LLLLENNQLQARYKALKLRRENSLLDDKQLYQLEStenlLKT 1095
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1308 LELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLK-----EHIRETLAKIQES 1382
Cdd:COG5022 1096 INVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDglfweANLEALPSPPPFA 1175
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1383 QSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQEShdemksvAKEKDDLQRLQEVLQSESDQLK 1462
Cdd:COG5022 1176 ALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKL-------ISEGWVPTEYSTSLKGFNNLNK 1248
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1463 ENIKEIVAKHLETEEELKVAHCCLKEQEEtinelrvnlsEKETEISTIQKQLEAINDKLQNkiqEIYEKEEQFNIKQISE 1542
Cdd:COG5022 1249 KFDTPASMSNEKLLSLLNSIDNLLSSYKL----------EEEVLPATINSLLQYINVGLFN---ALRTKASSLRWKSATE 1315
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1543 VQEKVNELKQFKEHRKAKDSALQSIEskmleltnrLQESQEEIQIMIKEKEEMKRV----QEALQIERDQLKEN------ 1612
Cdd:COG5022 1316 VNYNSEELDDWCREFEISDVDEELEE---------LIQAVKVLQLLKDDLNKLDELldacYSLNPAEIQNLKSRydpadk 1386
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 2217348656 1613 ----TKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKE 1651
Cdd:COG5022 1387 ennlPKEILKKIEALLIKQELQLSLEGKDETEVHLSEIFSEEK 1429
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
452-990 |
5.21e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 5.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 452 KLSINLLREIDES--VCSESDVFSNTLDTLSEIEWNPATKLLNQENIESELNSLRADYDN----LVLDYEQLRTEKE--E 523
Cdd:pfam05483 131 KVSLKLEEEIQENkdLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNniekMILAFEELRVQAEnaR 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 524 MELKLKEKNDLDEFEALERKTKKdqemqlihEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQKl 603
Cdd:pfam05483 211 LEMHFKLKEDHEKIQHLEEEYKK--------EINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQD- 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 604 ENIKmdlsyslESIEDPKQMKQTLFDaetvaldakresaflrsenleLKEKMKELATTYKQMENDIQLyqsqlEAKKKMQ 683
Cdd:pfam05483 282 ENLK-------ELIEKKDHLTKELED---------------------IKMSLQRSMSTQKALEEDLQI-----ATKTICQ 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 684 VDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLElegkitDLQKELNKEVEENEalREEVILLSELKSLPSEVERLRKEI 763
Cdd:pfam05483 329 LTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLE------ELLRTEQQRLEKNE--DQLKIITMELQKKSSELEEMTKFK 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 764 QDKS---EELHIITSEKDKLFSEvvhkESRVQGLLEEIGKTKDDLA----TTQSNYKSTDQEFQNFKTLHMDFEQKYKMV 836
Cdd:pfam05483 401 NNKEvelEELKKILAEDEKLLDE----KKQFEKIAEELKGKEQELIfllqAREKEIHDLEIQLTAIKTSEEHYLKEVEDL 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 837 LEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEK 916
Cdd:pfam05483 477 KTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREE 556
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348656 917 LQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNmniDTQEQLRNALESLKQHQETINTLKSKISEE 990
Cdd:pfam05483 557 FIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCN---NLKKQIENKNKNIEELHQENKALKKKGSAE 627
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
790-1228 |
5.57e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 790 RVQGLLEEIGKTKDDLATTQSNYkstdQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVnLSKEAQKFdSSLGALKTElS 869
Cdd:PRK04863 234 DMEAALRENRMTLEAIRVTQSDR----DLFKHLITESTNYVAADYMRHANERRVHLEEA-LELRRELY-TSRRQLAAE-Q 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 870 YKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLI----------TEKLQQTLEEVKTLTQEKDDLKQLQE 939
Cdd:PRK04863 307 YRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIeryqadleelEERLEEQNEVVEEADEQQEENEARAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 940 SLQIERDQLKSDIHDtVNMNIDTQE----QLRNALESLKQHQE-------TINTLKSKISEEVSRnlhmEENTGETKDEF 1008
Cdd:PRK04863 387 AAEEEVDELKSQLAD-YQQALDVQQtraiQYQQAVQALERAKQlcglpdlTADNAEDWLEEFQAK----EQEATEELLSL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1009 QQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESViaekEQLKTDLKEnIEMTIENQEELR 1088
Cdd:PRK04863 462 EQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQL----QQLRMRLSE-LEQRLRQQQRAE 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1089 LLGDELKKQqeivaqeknhaikkegeLSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELK 1168
Cdd:PRK04863 537 RLLAEFCKR-----------------LGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348656 1169 NKElTLEHMETERLE-LAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEA 1228
Cdd:PRK04863 600 ARA-PAWLAAQDALArLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDE 659
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
758-1849 |
5.86e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 758 RLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQ---EFQNFKTLHMDFEQKYK 834
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEmraRLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 835 MVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQtveREKTLIT 914
Cdd:pfam01576 82 SRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLS---KERKLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 915 EKLQqtlEEVKTLTQEKDDLKQLQEsLQIERDQLKSDIHDtvnmNIDTQEQLRNALESLKQHQE-TINTLKSKISEEVSR 993
Cdd:pfam01576 159 ERIS---EFTSNLAEEEEKAKSLSK-LKNKHEAMISDLEE----RLKKEEKGRQELEKAKRKLEgESTDLQEQIAELQAQ 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 994 NLHMEENTGETKDEFQQKMVGIDKKQdlEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDL 1073
Cdd:pfam01576 231 IAELRAQLAKKEEELQAALARLEEET--AQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTEL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1074 KENIEMTIENQEELRLLGDELKKQQEIVAQE-KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSE 1152
Cdd:pfam01576 309 EDTLDTTAAQQELRSKREQEVTELKKALEEEtRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAE 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1153 MQKKINEIENLKNElknkeltlehMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQ 1232
Cdd:pfam01576 389 LQAELRTLQQAKQD----------SEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIK 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1233 TKEELKIAHIHLKEHQETIDELRRsvsEKTAQIINTQDLEKSHTKLQEEipvLHEEQELLPNV-KEVSETQETMNELELL 1311
Cdd:pfam01576 459 LSKDVSSLESQLQDTQELLQEETR---QKLNLSTRLRQLEDERNSLQEQ---LEEEEEAKRNVeRQLSTLQAQLSDMKKK 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1312 TEQsttkDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQL---KEHIRETLAKIQESQSKQEQ 1388
Cdd:pfam01576 533 LEE----DAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLlvdLDHQRQLVSNLEKKQKKFDQ 608
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1389 SLnmKEKDNETTKIVSEMEQfkpKDSALLRIEIEMLGLSKRLQESHDemksvakEKDDLQRLQEVLQSESDQLKENIKEI 1468
Cdd:pfam01576 609 ML--AEEKAISARYAEERDR---AEAEAREKETRALSLARALEEALE-------AKEELERTNKQLRAEMEDLVSSKDDV 676
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1469 VAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVN 1548
Cdd:pfam01576 677 GKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEA 756
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1549 ELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKey 1628
Cdd:pfam01576 757 ELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKK-- 834
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1629 qflkmtavnetqekmceiehlkeqfetqklnLENIETENIRLTQILHENLEEMRSVTKERDDLrsveetlkveRDQLKE- 1707
Cdd:pfam01576 835 -------------------------------LKNLEAELLQLQEDLAASERARRQAQQERDEL----------ADEIASg 873
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1708 NLRETITRDLKIQEELRIAHMhlkeqQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVN 1787
Cdd:pfam01576 874 ASGKSALQDEKRRLEARIAQL-----EEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNK 948
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348656 1788 ETQKKVSEMEQLKKQikDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKerdNLRRVEETLK 1849
Cdd:pfam01576 949 ELKAKLQEMEGTVKS--KFKSSIAALEAKIAQLEEQLEQESRERQAANK---LVRRTEKKLK 1005
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1490-1657 |
6.02e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 6.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1490 EETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNI--KQISEVQEKVNEL-KQFKEHRKAKDSALQS 1566
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEAlqAEIDKLQAEIAEAeAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1567 I--------------ESKM-------LELTNRLQESQ-EEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMK--E 1622
Cdd:COG3883 95 LyrsggsvsyldvllGSESfsdfldrLSALSKIADADaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAelE 174
|
170 180 190
....*....|....*....|....*....|....*
gi 2217348656 1623 SQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQK 1657
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
346-798 |
7.33e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 7.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 346 KRYRKEIMDLKKQLEEVSLETRAQAMEKDQLAQ-----------LL-----EEKDL-LQKVQNEKIENLTrmlvTSSSLT 408
Cdd:pfam15921 338 RMYEDKIEELEKQLVLANSELTEARTERDQFSQesgnlddqlqkLLadlhkREKELsLEKEQNKRLWDRD----TGNSIT 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 409 LQ-------------QELKAKRKRRVTWCLGKINKMKNSNYADQFNIpTNITTKTHKL--SINLLREIDESVCSESDVFS 473
Cdd:pfam15921 414 IDhlrrelddrnmevQRLEALLKAMKSECQGQMERQMAAIQGKNESL-EKVSSLTAQLesTKEMLRKVVEELTAKKMTLE 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 474 NTLDTLSEIEWNPATKLLNQENIESELNSLRADYDNLVLDYEQLRTEKEEMelklkeKNDLDEFEALE-RKTKKDQEMQL 552
Cdd:pfam15921 493 SSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHL------RNVQTECEALKlQMAEKDKVIEI 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 553 I-HEISNLKNLVKH-------AEVYNQDLENELSSK------VELLREKED-QIKKLQEYIDSQKLENIKM--DLSYSLE 615
Cdd:pfam15921 567 LrQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRrlelqeFKILKDKKDaKIRELEARVSDLELEKVKLvnAGSERLR 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 616 SIEDPKQMK-QTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKElqsaf 694
Cdd:pfam15921 647 AVKDIKQERdQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGS----- 721
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 695 neitkltsliDGKVPKDLLcnlelegkitDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDK-SEELHII 773
Cdd:pfam15921 722 ----------DGHAMKVAM----------GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKlSQELSTV 781
|
490 500
....*....|....*....|....*
gi 2217348656 774 TSEKDKLFSEVVHKESRVQGLLEEI 798
Cdd:pfam15921 782 ATEKNKMAGELEVLRSQERRLKEKV 806
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
470-1101 |
7.34e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 7.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 470 DVFSNTLDTLSEIEWNPATKllNQENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNdldefEALERKTKKDQE 549
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEK--EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEAD-----EVLEEHEERREE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 550 MQ-LIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQ-----EYIDSQKLENIKMDLSYSLESIEDPKQM 623
Cdd:PRK02224 253 LEtLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaglDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 624 KQTLFDAETVALDAKRESAF-LRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTS 702
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADdLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 703 LIDgkvpkDLLCNL-ELEGKITDLQ---KELNKEVEENEALREEvillselkslpsevERLRKEIQDKSEELHIITSEKD 778
Cdd:PRK02224 413 FLE-----ELREERdELREREAELEatlRTARERVEEAEALLEA--------------GKCPECGQPVEGSPHVETIEED 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 779 KlfsevvhkesrvqgllEEIGKTKDDLATTQsnykstdqefqnfktlhmdfeqkykmvlEENERMNQEIvNLSKEAQKFD 858
Cdd:PRK02224 474 R----------------ERVEELEAELEDLE----------------------------EEVEEVEERL-ERAEDLVEAE 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 859 SSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQ 938
Cdd:PRK02224 509 DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 939 ESLQIERDQLksdihdtvnmniDTQEQLRNALESLKQHQETINtlkskiseevsrnlhmEENTgETKDEFQQKMvgiDKK 1018
Cdd:PRK02224 589 ESLERIRTLL------------AAIADAEDEIERLREKREALA----------------ELND-ERRERLAEKR---ERK 636
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1019 QDLEAKntqtltadvKDNEIIEQQRkifsliQEKNELQQMLESV---IAEKEQLKTDLKENIEMTIENQEELRLLGDELK 1095
Cdd:PRK02224 637 RELEAE---------FDEARIEEAR------EDKERAEEYLEQVeekLDELREERDDLQAEIGAVENELEELEELRERRE 701
|
....*.
gi 2217348656 1096 KQQEIV 1101
Cdd:PRK02224 702 ALENRV 707
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1737-1896 |
7.77e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 7.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1737 IDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKD--QSLTLSKlE 1814
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYEALQK-E 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1815 IENLNLAQKLHEnlEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARmlsKEHKETVDKLREKI 1894
Cdd:COG1579 98 IESLKRRISDLE--DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL---EELEAEREELAAKI 172
|
..
gi 2217348656 1895 SE 1896
Cdd:COG1579 173 PP 174
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
737-1229 |
8.97e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 8.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 737 EALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVhkESRVQGLLEEIGKTKDDLATTQSNYKSTD 816
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 817 QEFQNFKTLHMDFEQKYKMVLE-ENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQ 895
Cdd:COG4913 323 EELDELEAQIRGNGGDRLEQLErEIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEA 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 896 LENRDSTLQTverektliteKLQQTLEEVKTLTQEKDDLKQLQ-----ESLQIeRDQLKSDI-HDTVNMNI--------D 961
Cdd:COG4913 403 LEEALAEAEA----------ALRDLRRELRELEAEIASLERRKsnipaRLLAL-RDALAEALgLDEAELPFvgelievrP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 962 TQEQLRNALESL---------------KQHQETINTLKSK---ISEEVSRNLHMEENTGETKDEFQQKMVGIDKK----- 1018
Cdd:COG4913 472 EEERWRGAIERVlggfaltllvppehyAAALRWVNRLHLRgrlVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPfrawl 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1019 -------------QDLEA-KNTQ---TLTADVKDN----------EIIEQ-------QRKIFSLIQEKNELQQMLESVIA 1064
Cdd:COG4913 552 eaelgrrfdyvcvDSPEElRRHPraiTRAGQVKGNgtrhekddrrRIRSRyvlgfdnRAKLAALEAELAELEEELAEAEE 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1065 EKEQLKTDLKENiemtienQEELRLLGDELKKQQEIV----AQEKNHAIKKE-GELSRTCDRLAEVEEKLKEKSQQLQEK 1139
Cdd:COG4913 632 RLEALEAELDAL-------QERREALQRLAEYSWDEIdvasAEREIAELEAElERLDASSDDLAALEEQLEELEAELEEL 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1140 QQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEhmETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHL 1219
Cdd:COG4913 705 EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE--DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL 782
|
570
....*....|
gi 2217348656 1220 RGYIREIEAT 1229
Cdd:COG4913 783 NRAEEELERA 792
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1050-1290 |
9.91e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 9.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1050 QEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKL 1129
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1130 KEKsqqlqekqqqLLNVQEEMSEMQkKINEIENLKNELKNKEltLEHMETERLELAQKLNENYEEVKSITKERKVLKELQ 1209
Cdd:COG4942 100 EAQ----------KEELAELLRALY-RLGRQPPLALLLSPED--FLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1210 KSFETERDHLRGYIREIEatglQTKEELKIAhihLKEHQETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQ 1289
Cdd:COG4942 167 AELEAERAELEALLAELE----EERAALEAL---KAERQKLLARLEKELAELAAEL---AELQQEAEELEALIARLEAEA 236
|
.
gi 2217348656 1290 E 1290
Cdd:COG4942 237 A 237
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
737-992 |
1.00e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.50 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 737 EALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKdklfsevvhkESRVQGLLEEIGKTKDDlattqsnykstd 816
Cdd:pfam07888 38 ECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRREL----------ESRVAELKEELRQSREK------------ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 817 qefqnfktlHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKtelsyktQELQEKTREVQERLNEMEQLKEQL 896
Cdd:pfam07888 96 ---------HEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELE-------EDIKTLTQRVLERETELERMKERA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 897 ENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDI----------HDTVNMNIDTQEQL 966
Cdd:pfam07888 160 KKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTIttltqklttaHRKEAENEALLEEL 239
|
250 260
....*....|....*....|....*.
gi 2217348656 967 RNALESLKQHQETINTLKSKISEEVS 992
Cdd:pfam07888 240 RSLQERLNASERKVEGLGEELSSMAA 265
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1682-1905 |
1.15e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1682 RSVTKERDDLRSVEETLKVERDQLKENLRETitrdlkiQEELRiahmHLKEQQETIDklrgiVSEKTDKLSNMQKDLENS 1761
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEA-------EAALE----EFRQKNGLVD-----LSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1762 NAKLQEKIQELKANEHQLITLKKDVNETQKKVSE---MEQLKKQIKDQSLTLSKL----------------EIENLNlAQ 1822
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELLQspvIQQLRAQLAELEAELAELsarytpnhpdvialraQIAALR-AQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1823 KLHENLEEMKSVMKERDNLRRVEETLKLERDQLKE---SLQETKARDLEIQQELKTARMLskeHKETVDKLREKISEKTI 1899
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREASLQAQLAQLEArlaELPELEAELRRLEREVEVAREL---YESLLQRLEEARLAEAL 383
|
....*.
gi 2217348656 1900 QISDIQ 1905
Cdd:COG3206 384 TVGNVR 389
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1669-1921 |
1.16e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 44.06 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1669 RLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRE-----------------TITRDLKIQEELRI------ 1725
Cdd:PRK04778 109 EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRElrksllanrfsfgpaldELEKQLENLEEEFSqfvelt 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1726 -------AHMHLKEQQETIDKLRgivsEKTDKLSNMQKDLENsnaKLQEKIQELKANEHQLITlKKDVNETQKKVSEMEQ 1798
Cdd:PRK04778 189 esgdyveAREILDQLEEELAALE----QIMEEIPELLKELQT---ELPDQLQELKAGYRELVE-EGYHLDHLDIEKEIQD 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1799 LKKQIKDQSLTLSKLEIENLN-LAQKLHENLEEMKSVM-KERDNLRRVEETLKLERDQLKESLQETKARDLEIQQ----- 1871
Cdd:PRK04778 261 LKEQIDENLALLEELDLDEAEeKNEEIQERIDQLYDILeREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRvkqsy 340
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348656 1872 -----ELKTARMLSKEHKET---VDKLREKISEKTI---QISDIQKDLDKSKDELQKKQDR 1921
Cdd:PRK04778 341 tlnesELESVRQLEKQLESLekqYDEITERIAEQEIaysELQEELEEILKQLEEIEKEQEK 401
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
499-951 |
1.16e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 499 ELNSLRADYDNLVLDYEQLRTEKEEMELKLKE-KNDLDEFEALER-----KTKKDQEMQLIHEISNLKNLVKHAEVYnQD 572
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEElREELEKLEKLLQllplyQELEALEAELAELPERLEELEERLEEL-RE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 573 LENELSSKVELLREKEDQIKKLQEYIDSQKLENIKmdlsyslesiedpkqmkqtlfdaetvalDAKRESAFLRSENLELK 652
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLSLATEEELQ----------------------------DLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 653 EKMKELATTYKQMENDIQLYQSQLEAKKkmqvdLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELE---------GKIT 723
Cdd:COG4717 213 EELEEAQEELEELEEELEQLENELEAAA-----LEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlGLLA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 724 DLQKELNKEVEENEALREEVILLSELKSLpseverLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKD 803
Cdd:COG4717 288 LLFLLLAREKASLGKEAEELQALPALEEL------EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 804 DLAtTQSNYKSTDQEFQNFK-TLHMDFEQKYKMvLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKT--QELQEKTR 880
Cdd:COG4717 362 ELQ-LEELEQEIAALLAEAGvEDEEELRAALEQ-AEEYQELKEELEELEEQLEELLGELEELLEALDEEEleEELEELEE 439
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 881 EVQERLNEMEQLKEQLENRDSTLQTVEREKTL--ITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSD 951
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQLEEDGELaeLLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
1454-1778 |
1.20e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.90 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1454 LQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAindklqnkiqeiyEKEE 1533
Cdd:pfam19220 67 LRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLAA-------------ETEQ 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1534 QFNIKQisevqekvnELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMkrVQEALQIERdQLKENT 1613
Cdd:pfam19220 134 NRALEE---------ENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQ--AAELAELTR-RLAELE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1614 KEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLEnIETENIRltqilHENLEEMrsVTKERDDLRS 1693
Cdd:pfam19220 202 TQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERASLRMK-LEALTAR-----AAATEQL--LAEARNQLRD 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1694 VEETLKVERDQLKENLRETITRDLKIqEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKD-------LENSNAKLQ 1766
Cdd:pfam19220 274 RDEAIRAAERRLKEASIERDTLERRL-AGLEADLERRTQQFQEMQRARAELEERAEMLTKALAAkdaalerAEERIASLS 352
|
330
....*....|..
gi 2217348656 1767 EKIQELKANEHQ 1778
Cdd:pfam19220 353 DRIAELTKRFEV 364
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1307-1589 |
1.34e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.18 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1307 ELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKER-DNLKTIKEALEVKHDQLKEHIRETLAKIQESQSK 1385
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESsKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1386 QEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKdDLQRLQEVLQSESDQLKENI 1465
Cdd:COG5185 312 ESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEV-ELSKSSEELDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1466 KEIVAKHLETEEELKVAhccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQE 1545
Cdd:COG5185 391 ESLDEIPQNQRGYAQEI---LATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEE 467
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2217348656 1546 KVNELKQFKEHRKAK-DSALQSIESKMLELTNRLQESQEEIQIMI 1589
Cdd:COG5185 468 AYDEINRSVRSKKEDlNEELTQIESRVSTLKATLEKLRAKLERQL 512
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
849-977 |
1.44e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 849 NLSKEAQKFD---SSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLEnrdstlqtvEREKTLITEKLQQTLEEVK 925
Cdd:PRK00409 510 LIGEDKEKLNeliASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ---------EEEDKLLEEAEKEAQQAIK 580
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 926 TLTQEKDD-LKQLQESLQIERDQLKSdiHDTvnmnIDTQEQLRNALESLKQHQ 977
Cdd:PRK00409 581 EAKKEADEiIKELRQLQKGGYASVKA--HEL----IEARKRLNKANEKKEKKK 627
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
759-1091 |
1.54e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 759 LRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLE 838
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 839 ENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKtLITEKLQ 918
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE-AEQALDE 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 919 QTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHME 998
Cdd:COG4372 188 LLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAI 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 999 ENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIE 1078
Cdd:COG4372 268 LVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLL 347
|
330
....*....|...
gi 2217348656 1079 MTIENQEELRLLG 1091
Cdd:COG4372 348 VGLLDNDVLELLS 360
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1050-1255 |
1.56e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.73 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1050 QEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKL 1129
Cdd:pfam07888 41 QERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDAL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1130 -KEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKEL 1208
Cdd:pfam07888 121 lAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNS 200
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2217348656 1209 QKSFETERDHLRGYIReieatglQTKEELKIAHIHLKEHQETIDELR 1255
Cdd:pfam07888 201 LAQRDTQVLQLQDTIT-------TLTQKLTTAHRKEAENEALLEELR 240
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
518-1350 |
1.68e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 518 RTEKEEMELKLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSK-VELLREKEDQIKKLQE 596
Cdd:TIGR00606 229 KEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKmEKVFQGTDEQLNDLYH 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 597 YIDS--QKLENIKMDLSYSLESIEDPKQM---KQTLFDAE--TVALDAKRESAFLRSENLELKEKMKEL--------ATT 661
Cdd:TIGR00606 309 NHQRtvREKERELVDCQRELEKLNKERRLlnqEKTELLVEqgRLQLQADRHQEHIRARDSLIQSLATRLeldgfergPFS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 662 YKQMENDIQLYQSQLEAKKKMQVDLEKELQSafNEITKLTSLIDGKVPKDLLcnleleGKITDLQKE-LNKEVEENEALR 740
Cdd:TIGR00606 389 ERQIKNFHTLVIERQEDEAKTAAQLCADLQS--KERLKQEQADEIRDEKKGL------GRTIELKKEiLEKKQEELKFVI 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 741 eevillSELKSLPSEVER-LRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEF 819
Cdd:TIGR00606 461 ------KELQQLEGSSDRiLELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTR 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 820 QNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAqKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENR 899
Cdd:TIGR00606 535 TQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYF-PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 900 dstlqtvEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL-----KSDIHDTVNMNIDTQEQ-----LRNA 969
Cdd:TIGR00606 614 -------LESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRamlagATAVYSQFITQLTDENQsccpvCQRV 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 970 LESLKQHQETINTLKSKI---------SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQ--DLEAKNTQTLTADVKDNEI 1038
Cdd:TIGR00606 687 FQTEAELQEFISDLQSKLrlapdklksTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEipELRNKLQKVNRDIQRLKND 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1039 IEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLL-GDELKKQQEIVAQEKNHAIKK---EGE 1114
Cdd:TIGR00606 767 IEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSdLDRTVQQVNQEKQEKQHELDTvvsKIE 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1115 LSRTC------------DRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERL 1182
Cdd:TIGR00606 847 LNRKLiqdqqeqiqhlkSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1183 ELaqkLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKE-ELKIAHIHLKE---HQETIDELRRSV 1258
Cdd:TIGR00606 927 EL---ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKEtELNTVNAQLEEcekHQEKINEDMRLM 1003
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1259 SektaQIINTQDLEKSHtkLQEEIPVLHEEQELLPNVKEVSETQETMNELELL-TEQSTTKDSTTLARIEMERLRLNEKF 1337
Cdd:TIGR00606 1004 R----QDIDTQKIQERW--LQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLqMKQEHQKLEENIDLIKRNHVLALGRQ 1077
|
890
....*....|...
gi 2217348656 1338 QESQEEIKSLTKE 1350
Cdd:TIGR00606 1078 KGYEKEIKHFKKE 1090
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1734-1923 |
1.70e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1734 QETIDKLRGIVSEKTDKLSNMQK--DLENSNAKLQEKIQELKANEHQLITLKKDVNETQkkvSEMEQLKKQIKDQSLTLS 1811
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQknGLVDLSEEAKLLLQQLSELESQLAEARAELAEAE---ARLAALRAQLGSGPDALP 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1812 klEIENLNLAQKLHENLEEMKSvmKERDNLRRVEE------TLKLERDQLKESLQETKARDL-EIQQELKTARMLSKEHK 1884
Cdd:COG3206 258 --ELLQSPVIQQLRAQLAELEA--ELAELSARYTPnhpdviALRAQIAALRAQLQQEAQRILaSLEAELEALQAREASLQ 333
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2217348656 1885 ETVDKLREKIS---EKTIQISDIQKDLDKSKDELQKKQDRQN 1923
Cdd:COG3206 334 AQLAQLEARLAelpELEAELRRLEREVEVARELYESLLQRLE 375
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
842-998 |
1.74e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 842 RMNQEIVNLSKEAQKFDSSLGALKTELSyktqELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITE--KLQQ 919
Cdd:COG3206 202 RQKNGLVDLSEEAKLLLQQLSELESQLA----EARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEA 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 920 TLEEVKTLTQE--------KDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISE-- 989
Cdd:COG3206 278 ELAELSARYTPnhpdvialRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRle 357
|
170
....*....|..
gi 2217348656 990 ---EVSRNLHME 998
Cdd:COG3206 358 revEVARELYES 369
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1329-1530 |
1.80e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1329 ERLRLNEKFQESQEEIKS---------LTKERDNLKTIKEALEVKHDQLKEHIREtlakiQESQSKQEQSLNMKekdneT 1399
Cdd:PHA02562 195 QQIKTYNKNIEEQRKKNGeniarkqnkYDELVEEAKTIKAEIEELTDELLNLVMD-----IEDPSAALNKLNTA-----A 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1400 TKIVSEMEQFKpKDSALLRIEIE----MLGLS---KRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEI--VA 1470
Cdd:PHA02562 265 AKIKSKIEQFQ-KVIKMYEKGGVcptcTQQISegpDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLleLK 343
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348656 1471 KHLETEE-ELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYE 1530
Cdd:PHA02562 344 NKISTNKqSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1082-1292 |
2.03e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1082 ENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEksqqlqekqqqllnVQEEMSEMQKKINEIE 1161
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA--------------LEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1162 NLKNELKNKELTLEHMETERLELAQKLNE--------NYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQT 1233
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348656 1234 KEELKIAHIHLKEHQETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQELL 1292
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLL---ARLEKELAELAAELAELQQEAEEL 225
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
1161-1452 |
2.38e-03 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 43.50 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1161 ENLKNELKNKELTLEHMETERLELAQKLNENYEEvkSITKERKVLKElqksfETERDHLRGYIREIEatglqtkeeLKIA 1240
Cdd:PRK12903 657 DNLLRITHFKFSEKDFENYHKEELAQYLIEALNE--IYFKKRQVILD-----KIALNTFFESERYII---------LSAL 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1241 HIHLKEHQETIDELRRSV-----SEKTAQIINTQDLEKSHTKLQEEIPvlheeQELLPNVKEVSETQETMNELELLTEQS 1315
Cdd:PRK12903 721 DKYWQNHIDTMDKLRSGVnlvqySQKNPYQVYTEEGTKKFNILLQEIA-----YDVIVSLFNNPNAEKILIITEILSDGI 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1316 TTKDSTTLARIEMERLRLNEkfqesQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEK 1395
Cdd:PRK12903 796 NNSDINDRPQELIDQIIESE-----EERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINEN 870
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348656 1396 DNettkivsEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQE 1452
Cdd:PRK12903 871 KN-------EFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEK 920
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
496-984 |
2.40e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 496 IESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNDLDEfEALERKTKKDQEMQLIHEISNLKnlvkhaEVYNQDLEN 575
Cdd:PRK01156 216 TLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYES-EIKTAESDLSMELEKNNYYKELE------ERHMKIIND 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 576 ELSSKVELLREKEDQIKKLQEYidSQKLENIKMDLSYSLESIEDPKQMKQTlfdaetvaldakresaflRSENLELKEKM 655
Cdd:PRK01156 289 PVYKNRNYINDYFKYKNDIENK--KQILSNIDAEINKYHAIIKKLSVLQKD------------------YNDYIKKKSRY 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 656 KELATTYKQMENDIQLYQSQL---EAKKKMQVDLEKELQSAFNEITKLTSL--IDGKVPKDLLCNL-----ELEGKITDL 725
Cdd:PRK01156 349 DDLNNQILELEGYEMDYNSYLksiESLKKKIEEYSKNIERMSAFISEILKIqeIDPDAIKKELNEInvklqDISSKVSSL 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 726 QKELNKEVEENEALREEVILLS--------------------------ELKSLPSEVERLRKEIQDKSEELHIITSEKDK 779
Cdd:PRK01156 429 NQRIRALRENLDELSRNMEMLNgqsvcpvcgttlgeeksnhiinhyneKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEY 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 780 LFSEVVHK----ESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHM-DFEQKYKMVLEEN-------------- 840
Cdd:PRK01156 509 LESEEINKsineYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLeDLDSKRTSWLNALavislidietnrsr 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 841 -ERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQ 919
Cdd:PRK01156 589 sNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPD 668
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348656 920 TLEEVKTLTQEKDDLKQLQESLQ---IERDQLKSdIHDTVNMNIDTQEQ----LRNALESLKQHQETINTLK 984
Cdd:PRK01156 669 LKEITSRINDIEDNLKKSRKALDdakANRARLES-TIEILRTRINELSDrindINETLESMKKIKKAIGDLK 739
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
745-899 |
2.50e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 745 LLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSN--YKSTDQEFQNF 822
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeYEALQKEIESL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348656 823 KTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSyktQELQEKTREVQERLNEMEQLKEQLENR 899
Cdd:COG1579 102 KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELD---EELAELEAELEELEAEREELAAKIPPE 175
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
637-1282 |
2.69e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 637 AKRESAFLRSENLELKekmkeLATTYKQMENDIQLYQSQLEAKKKMQVDL-------EKELQSAFNEITKLTSLIDGKVP 709
Cdd:pfam12128 244 TKLQQEFNTLESAELR-----LSHLHFGYKSDETLIASRQEERQETSAELnqllrtlDDQWKEKRDELNGELSAADAAVA 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 710 KD------------LLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLR--------KEIQDKSEE 769
Cdd:pfam12128 319 KDrselealedqhgAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRskikeqnnRDIAGIKDK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 770 LHIITSEKDKLFSEV-VHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFqNFKTLHMDFEQKYKMVLEEN----ERMN 844
Cdd:pfam12128 399 LAKIREARDRQLAVAeDDLQALESELREQLEAGKLEFNEEEYRLKSRLGEL-KLRLNQATATPELLLQLENFderiERAR 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 845 QEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVERE----------KTLIT 914
Cdd:pfam12128 478 EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKeapdweqsigKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 915 EKLQQT-LEEVKTLTQEKD---------DLKQLQ--------ESLQIERDQLKSDIHDtvnmnidtqeqlrnALESLKQH 976
Cdd:pfam12128 558 ELLHRTdLDPEVWDGSVGGelnlygvklDLKRIDvpewaaseEELRERLDKAEEALQS--------------AREKQAAA 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 977 QETINTLKSKIsEEVSRNLHMEENTGETKDEFQQKMVgiDKKQDLEAKNTQTLTAdvkdneiiEQQRKIFSLIQEKNELQ 1056
Cdd:pfam12128 624 EEQLVQANGEL-EKASREETFARTALKNARLDLRRLF--DEKQSEKDKKNKALAE--------RKDSANERLNSLEAQLK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1057 QMLESVIAEKEQLKTDLKENiemTIENQEELRLLGDELKKQ-----QEIVAQEKNHAIKKEG---ELSRTCDRLAEVEEK 1128
Cdd:pfam12128 693 QLDKKHQAWLEEQKEQKREA---RTEKQAYWQVVEGALDAQlallkAAIAARRSGAKAELKAletWYKRDLASLGVDPDV 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1129 LKEKSQQLQEKQQQLLNV---QEEMSEMQKKINEIENLKNElkNKELTLEHMETERLELAQKLNENYEEVKSITKErkvl 1205
Cdd:pfam12128 770 IAKLKREIRTLERKIERIavrRQEVLRYFDWYQETWLQRRP--RLATQLSNIERAISELQQQLARLIADTKLRRAK---- 843
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1206 kelqksFETERDHLRGyiREIEATGLQTKEELKIAHI-HLKEHQeTIDELRRSVSEKTAQIintQDLEKSHTKLQEEI 1282
Cdd:pfam12128 844 ------LEMERKASEK--QQVRLSENLRGLRCEMSKLaTLKEDA-NSEQAQGSIGERLAQL---EDLKLKRDYLSESV 909
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1678-2455 |
2.75e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1678 LEEMRSVTKERDDLRSVEETLKVERDQLKENlRETITRDLKIQEELR--IAHMHLKEQQETIDKLRGIVSEktdkLSNMQ 1755
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRRE-REKAERYQALLKEKReyEGYELLKEKEALERQKEAIERQ----LASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1756 KDLEnsnaKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLT---------LSKLEIENLNLAQKLHE 1826
Cdd:TIGR02169 251 EELE----KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEaeiaslersIAEKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1827 NLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQK 1906
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1907 DLDKSKDELQKKQDRQNhQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIE-FQKEL 1985
Cdd:TIGR02169 407 ELDRLQEELQRLSEELA-DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDrVEKEL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1986 SmRVKANLSLPYLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQH---ESINKFEMDFI----DEVEKQKE 2058
Cdd:TIGR02169 486 S-KLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYAtaiEVAAGNRLNNVvvedDAVAKEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2059 LLIKIQHLQQDCDVPSRELRD-------LKLNQNMDLHIEeiLKDFSESEFPSIKTEFQQVL------SNRKEMTQFlee 2125
Cdd:TIGR02169 565 ELLKRRKAGRATFLPLNKMRDerrdlsiLSEDGVIGFAVD--LVEFDPKYEPAFKYVFGDTLvvedieAARRLMGKY--- 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2126 wlntrfdieklkngiqkendricqvnnffnnRIIAImneSTEFEERSATI------SKEWEQDLKSLKEKNEKLFKNYQT 2199
Cdd:TIGR02169 640 -------------------------------RMVTL---EGELFEKSGAMtggsraPRGGILFSRSEPAELQRLRERLEG 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2200 LKTSLASGAQvnpttqdnknphvtsratqltteKIRELENSLHEAKESAMHKESKIIKMQKELEVTNDIIAKLQAKVHES 2279
Cdd:TIGR02169 686 LKRELSSLQS-----------------------ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2280 NKCLEKTKETIQVLQDKVALGAK---PYKEEIEDLKMKLVKI-DLEKMKNAKEFEKEISATKATVEYQKEVIRLLRENLR 2355
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEArieELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 2356 RSQQA--------QDTSVISEHTDPQPSNKPLTCGGGSGIVQNTKALI--LKSEHIRLEKEISKLKQQNEQLIKQKNELL 2425
Cdd:TIGR02169 823 RLTLEkeylekeiQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELeeLEAALRDLESRLGDLKKERDELEAQLRELE 902
|
810 820 830
....*....|....*....|....*....|
gi 2217348656 2426 SNNQHLSNEVKTWKERTLKREAHKQVTCEN 2455
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
926-1223 |
3.01e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 926 TLTQEKDD-LKQLQES--LQIErdQLKSDIHDtvnmnidtqEQLRNALESLKQHQETINTLKSKISEEvsrnlhmeentg 1002
Cdd:PRK05771 13 TLKSYKDEvLEALHELgvVHIE--DLKEELSN---------ERLRKLRSLLTKLSEALDKLRSYLPKL------------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1003 ETKDEFQQKMvgidKKQDLEAkntqtlTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKtdLKENIEMTIE 1082
Cdd:PRK05771 70 NPLREEKKKV----SVKSLEE------LIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE--PWGNFDLDLS 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1083 NQEELRL-------LGDELKKQQEIVAQEKNHAIKKEGELSRTC------DRLAEVEEKLKeKSQQLQEKQQQLLNVQEE 1149
Cdd:PRK05771 138 LLLGFKYvsvfvgtVPEDKLEELKLESDVENVEYISTDKGYVYVvvvvlkELSDEVEEELK-KLGFERLELEEEGTPSEL 216
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1150 MSEMQKKINEIENLKNELKNKeltLEhmeterlELAQKLNE---NYEEVKSITKERKVLKELQKsfETER-DHLRGYI 1223
Cdd:PRK05771 217 IREIKEELEEIEKERESLLEE---LK-------ELAKKYLEellALYEYLEIELERAEALSKFL--KTDKtFAIEGWV 282
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1558-2064 |
3.09e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1558 KAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIV------AKMKESQEKEYQFL 1631
Cdd:PRK01156 124 ISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISnidyleEKLKSSNLELENIK 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1632 KMTAVNETQEKMC--EIEHLKEQFETQKLNLENIETENIRLTQiLHENLEEMRSVTKERDDLRSVEETLKVERDQLKENL 1709
Cdd:PRK01156 204 KQIADDEKSHSITlkEIERLSIEYNNAMDDYNNLKSALNELSS-LEDMKNRYESEIKTAESDLSMELEKNNYYKELEERH 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1710 RETITRDLKIQEELRIAHMHLKEQQETIDK-LRGIVSEKTDKLSNMQK--DLENSNAKLQEKIQELKANEHQLITLKKDV 1786
Cdd:PRK01156 283 MKIINDPVYKNRNYINDYFKYKNDIENKKQiLSNIDAEINKYHAIIKKlsVLQKDYNDYIKKKSRYDDLNNQILELEGYE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1787 NETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKE-RDNLRRVE---ETLKLERDQLKESLQET 1862
Cdd:PRK01156 363 MDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEiNVKLQDISskvSSLNQRIRALRENLDEL 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1863 KaRDLEIQQEL------------KTARMLSKEHKETVDKLREKISEKTIQISDI---QKDLDKSKDELQKKQDRqnhQVK 1927
Cdd:PRK01156 443 S-RNMEMLNGQsvcpvcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIdekIVDLKKRKEYLESEEIN---KSI 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1928 PEKRLLSDGQQHLTEsLREKCSRIKELLKRYSEMDDHYECLNRLSLDlEKEIEFQKELSMR----VKANLSLPYLQTKHI 2003
Cdd:PRK01156 519 NEYNKIESARADLED-IKIKINELKDKHDKYEEIKNRYKSLKLEDLD-SKRTSWLNALAVIslidIETNRSRSNEIKKQL 596
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348656 2004 EKLFTANQRCSMEFHRIMkklKYVLSYVTKIKEEQHESINKfemdfIDEVEKQKELLIKIQ 2064
Cdd:PRK01156 597 NDLESRLQEIEIGFPDDK---SYIDKSIREIENEANNLNNK-----YNEIQENKILIEKLR 649
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1025-1238 |
3.13e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1025 NTQTLTADVKDNEIIEQ---QRKIFSLIQEKN-----ELQQMLESVIAEKEQLKTDLKE------NIEMTIENQEE-LRL 1089
Cdd:PHA02562 180 NQQIQTLDMKIDHIQQQiktYNKNIEEQRKKNgeniaRKQNKYDELVEEAKTIKAEIEEltdellNLVMDIEDPSAaLNK 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1090 LGDELKKQQEIVAQ-EKNHAIKKEGELSRTCDRLAEVEEKLKEKsqqlqekqqqllnVQEEMSEMQKKINEIENLKNELK 1168
Cdd:PHA02562 260 LNTAAAKIKSKIEQfQKVIKMYEKGGVCPTCTQQISEGPDRITK-------------IKDKLKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348656 1169 NKELTLEHMETERLELAQKLNENYE----EVKSITKERKVLKELQKSFETERDHLRGYIREIEATGlQTKEELK 1238
Cdd:PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKQslitLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIV-KTKSELV 399
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
871-1110 |
3.25e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 3.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 871 KTQELQEKTREVQERLnemEQLKEQLENRDSTLQTVEREktliTEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKS 950
Cdd:PRK11281 67 QTLALLDKIDRQKEET---EQLKQQLAQAPAKLRQAQAE----LEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQN 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 951 DIHDTVNMNID-----TQ-EQLRNAL-ESLKQHQETINTLKS-KISEEVSRN-----LHMEENTGETKDEFQQK-MVGID 1016
Cdd:PRK11281 140 AQNDLAEYNSQlvslqTQpERAQAALyANSQRLQQIRNLLKGgKVGGKALRPsqrvlLQAEQALLNAQNDLQRKsLEGNT 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1017 KKQDLEAK-------NTQTLTADVKD-NEIIEQQRkifsLIQEKNELQQMLESVIAEKEQ----LKTDLKENIEMT---I 1081
Cdd:PRK11281 220 QLQDLLQKqrdyltaRIQRLEHQLQLlQEAINSKR----LTLSEKTVQEAQSQDEAARIQanplVAQELEINLQLSqrlL 295
|
250 260 270
....*....|....*....|....*....|.
gi 2217348656 1082 ENQEEL-RLLGDELK-KQQEIVAQEKNHAIK 1110
Cdd:PRK11281 296 KATEKLnTLTQQNLRvKNWLDRLTQSERNIK 326
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
830-1104 |
3.34e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 830 EQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVERE 909
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 910 KTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQ---IERDQLKSDIHDTVNMNIDTQEQLRNALESLKQhQETINTLKSK 986
Cdd:COG4372 110 AEELQEELEELQKERQDLEQQRKQLEAQIAELQseiAEREEELKELEEQLESLQEELAALEQELQALSE-AEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 987 ISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEK 1066
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270
....*....|....*....|....*....|....*...
gi 2217348656 1067 EQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQE 1104
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAA 306
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1155-1522 |
3.41e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.82 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1155 KKINEIENLKNELKNKELTLEHMETERLELAQKlnenyEEVKSITKERKVLKElqkSFETERDHLRGYIREIEATGLQTK 1234
Cdd:pfam09731 121 KSEQEKEKALEEVLKEAISKAESATAVAKEAKD-----DAIQAVKAHTDSLKE---ASDTAEISREKATDSALQKAEALA 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1235 EELKIAHIHLKEHQET-----IDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVkEVSETQETMNELE 1309
Cdd:pfam09731 193 EKLKEVINLAKQSEEEaapplLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIV-FQQELVSIFPDII 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1310 L----LTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKsltkerdnlKTIKEALEVKHDQLKEHIRETLAKIQESQSK 1385
Cdd:pfam09731 272 PvlkeDNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREE---------KHIERALEKQKEELDKLAEELSARLEEVRAA 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1386 QEQSLNmKEKDNETTKIVSEMEQfkpkdsaLLRIEIEmlglskRLQESHDEmksvakekddlqRLQEVLQSESDQLKENI 1465
Cdd:pfam09731 343 DEAQLR-LEFEREREEIRESYEE-------KLRTELE------RQAEAHEE------------HLKDVLVEQEIELQREF 396
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348656 1466 KEIVAKHLETEEELkvahcclkeQEETINELRVNLSEKETEISTIqKQLEAINDKLQ 1522
Cdd:pfam09731 397 LQDIKEKVEEERAG---------RLLKLNELLANLKGLEKATSSH-SEVEDENRKAQ 443
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
1500-1608 |
3.52e-03 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 42.84 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1500 LSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFK---EHRKAKDSALQSIESKMLELTN 1576
Cdd:NF037998 639 LTNKEKLSSKLLLKIKKINDKIDLLKKKEENKEAKKNAKLIEKVKAKIKKLEQKItklKLNKKKSNKIIKIRWKKKDWIF 718
|
90 100 110
....*....|....*....|....*....|..
gi 2217348656 1577 RLQESQEEiqIMIKEKEEMKRVQEALQIERDQ 1608
Cdd:NF037998 719 FLKDNTDV--ILAIESEIEIQVIEKIKVKRNE 748
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
653-902 |
3.66e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 653 EKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkdllcnlELEGKITDLQKELNKE 732
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-----------ALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 733 VEENEALREEvilLSELKSLPSEVERLRKEIQDKSEELHIITSEKdklFSEVVHKESRVQGLLEEIGKTKDDLATTQSNY 812
Cdd:COG4942 89 EKEIAELRAE---LEAQKEELAELLRALYRLGRQPPLALLLSPED---FLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 813 KSTDQEFQNFKtlhmdfeQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQL 892
Cdd:COG4942 163 AALRAELEAER-------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
250
....*....|
gi 2217348656 893 KEQLENRDST 902
Cdd:COG4942 236 AAAAAERTPA 245
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1783-1937 |
3.78e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 3.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1783 KKDVNETQKKVSEM----EQLKKQIKDQSLTLSKLEIEnlnlAQKLHENLEEMKsvmkerdnlrrveETLKLERDQLKES 1858
Cdd:PRK00409 508 KKLIGEDKEKLNELiaslEELERELEQKAEEAEALLKE----AEKLKEELEEKK-------------EKLQEEEDKLLEE 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1859 LQEtkardlEIQQELKTARmlsKEHKETVDKLREKISEKTI-----QISDIQKDLDKSKDEL---QKKQDRQNHQVKP-- 1928
Cdd:PRK00409 571 AEK------EAQQAIKEAK---KEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKekkKKKQKEKQEELKVgd 641
|
....*....
gi 2217348656 1929 EKRLLSDGQ 1937
Cdd:PRK00409 642 EVKYLSLGQ 650
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1557-1918 |
4.08e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.52 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1557 RKAKdSALQSIESKMLELTNRLQESQEEIQimikekeEMKRVQEALQIERDQLKENTKEIvakMKESQEKEYQFlkMTAV 1636
Cdd:PRK04778 101 RKAK-HEINEIESLLDLIEEDIEQILEELQ-------ELLESEEKNREEVEQLKDLYREL---RKSLLANRFSF--GPAL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1637 NETQEKMCEIEHLKEQFETQKLNLENIETENIRLTqiLHENLEEMRSVTKERDDLrsVEETLKVERDQLKEnLRETItrd 1716
Cdd:PRK04778 168 DELEKQLENLEEEFSQFVELTESGDYVEAREILDQ--LEEELAALEQIMEEIPEL--LKELQTELPDQLQE-LKAGY--- 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1717 lkiqEELRIAHMHLKEQQ--ETIDKLRGIVSEKTDKLSNMQ-KDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKV 1793
Cdd:PRK04778 240 ----RELVEEGYHLDHLDieKEIQDLKEQIDENLALLEELDlDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTL 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1794 SEMEQlkkQIKDQSLTLsKLEIENLNLAQKL-HENLEEMKSVMKERDNLRRVeetlkleRDQLKESLQETKARDLEIQQE 1872
Cdd:PRK04778 316 PDFLE---HAKEQNKEL-KEEIDRVKQSYTLnESELESVRQLEKQLESLEKQ-------YDEITERIAEQEIAYSELQEE 384
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2217348656 1873 LKTArmlsKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKK 1918
Cdd:PRK04778 385 LEEI----LKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
828-948 |
4.09e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 828 DFEQKYKMVLEEN-------ERMNQEIVNLSKEAqkfdSSLGALKTELSYKTQELQEKTREVQERLNE-------MEQLK 893
Cdd:PRK04863 541 EFCKRLGKNLDDEdeleqlqEELEARLESLSESV----SEARERRMALRQQLEQLQARIQRLAARAPAwlaaqdaLARLR 616
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2217348656 894 EQLENRDSTLQTVerektliTEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL 948
Cdd:PRK04863 617 EQSGEEFEDSQDV-------TEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
313-941 |
4.37e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 313 FDETLTALQFASTAKYMKN-----TPYVNEVSTDEALLKRYRKEIMDLKKQLEEVsletraQAMEKDQLAQLLEEKDLLQ 387
Cdd:PRK01156 155 LDEILEINSLERNYDKLKDvidmlRAEISNIDYLEEKLKSSNLELENIKKQIADD------EKSHSITLKEIERLSIEYN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 388 KVQNEKI---ENLTRMLVTSSSLTLQQELKAKRKRRVTWCLGKINKMKNSnyadqfniptnitTKTHKLSINLLREIDES 464
Cdd:PRK01156 229 NAMDDYNnlkSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKEL-------------EERHMKIINDPVYKNRN 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 465 VCSESDVFSNTLDTLSEIewnpatkllnQENIESELNSlradYDNLVLDYEQLRTEKEEMELKLKEKNDLDEfEALERKT 544
Cdd:PRK01156 296 YINDYFKYKNDIENKKQI----------LSNIDAEINK----YHAIIKKLSVLQKDYNDYIKKKSRYDDLNN-QILELEG 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 545 KKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSqKLENIKMDLSYSLESIEDPKQMK 624
Cdd:PRK01156 361 YEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINV-KLQDISSKVSSLNQRIRALRENL 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 625 QTLfdAETVALDAKRESAFLRSENLElKEKMKELATTYKQMENDIQlyqsqlEAKKKMQVDLEKELQSAFNEITKLTSLI 704
Cdd:PRK01156 440 DEL--SRNMEMLNGQSVCPVCGTTLG-EEKSNHIINHYNEKKSRLE------EKIREIEIEVKDIDEKIVDLKKRKEYLE 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 705 DGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKE------IQDKSEELHIITSEKD 778
Cdd:PRK01156 511 SEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTswlnalAVISLIDIETNRSRSN 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 779 KLFSEVVHKESRVQGLLEEIgktKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVleenERMNQEIVNLSKEAQKFD 858
Cdd:PRK01156 591 EIKKQLNDLESRLQEIEIGF---PDDKSYIDKSIREIENEANNLNNKYNEIQENKILI----EKLRGKIDNYKKQIAEID 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 859 SSLGALKtELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQ 938
Cdd:PRK01156 664 SIIPDLK-EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKRLR 742
|
...
gi 2217348656 939 ESL 941
Cdd:PRK01156 743 EAF 745
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1679-1961 |
4.69e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.43 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1679 EEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIahmhLKEQQETIDKLRGIVSEKTDKLSNMQKDL 1758
Cdd:COG1340 8 SSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKE----LREEAQELREKRDELNEKVKELKEERDEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1759 ENSNAKLQEKIQELKANEHQLITLKKDVNETQKkvsEMEQLKKQIKDQSLTLSK-----LEI----ENLNLAQKLHENLE 1829
Cdd:COG1340 84 NEKLNELREELDELRKELAELNKAGGSIDKLRK---EIERLEWRQQTEVLSPEEekelvEKIkeleKELEKAKKALEKNE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1830 EMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLD 1909
Cdd:COG1340 161 KLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELR 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2217348656 1910 KSKDELQKKQDRQNHQVKPEKRllsdgqqhltESLREKCSRIKELLKRYSEM 1961
Cdd:COG1340 241 ELRKELKKLRKKQRALKREKEK----------EELEEKAEEIFEKLKKGEKL 282
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1765-1966 |
5.14e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1765 LQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIkdQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRV 1844
Cdd:COG4913 240 AHEALEDAREQIELLEPIRELAERYAAARERLAELEYLR--AALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1845 EETLKLERDQLKESLQETKARDLE-IQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQN 1923
Cdd:COG4913 318 LDALREELDELEAQIRGNGGDRLEqLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALE 397
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2217348656 1924 ---HQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYE 1966
Cdd:COG4913 398 eelEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLL 443
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1327-1609 |
5.44e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1327 EMERLrLNEKFQESQEEIKSLTKERDNlktIKEALEVKHDQLKEhiretlakiQESQSKQeqslNMKEKDNETTKIVSEM 1406
Cdd:PHA02562 167 EMDKL-NKDKIRELNQQIQTLDMKIDH---IQQQIKTYNKNIEE---------QRKKNGE----NIARKQNKYDELVEEA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1407 EQFKPkdsallriEIEMLglskrlqesHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIvAKHLETEEELKVAHCCL 1486
Cdd:PHA02562 230 KTIKA--------EIEEL---------TDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF-QKVIKMYEKGGVCPTCT 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1487 KEQEETINELrvnlSEKETEISTIQKQLEAINDKlqnkIQEIYEKEEQFNiKQISEVQEKVNELKQFKEHRKAKDSALQS 1566
Cdd:PHA02562 292 QQISEGPDRI----TKIKDKLKELQHSLEKLDTA----IDELEEIMDEFN-EQSKKLLELKNKISTNKQSLITLVDKAKK 362
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2217348656 1567 IESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQL 1609
Cdd:PHA02562 363 VKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
556-931 |
5.52e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 5.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 556 ISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQKLE------NIKMDLSYSLESIEDPKQMKQTLFD 629
Cdd:pfam17380 271 LNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEeaekarQAEMDRQAAIYAEQERMAMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 630 AETVALDAKRESAFLRSENLELK-EKMKELATTYKQMENDIQLYQSQLEAKKKMQVdLEKELQSafneitkltslidgkv 708
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAMEiSRMRELERLQMERQQKNERVRQELEAARKVKI-LEEERQR---------------- 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 709 pkdllcnlelegKITDLQKELNK-EVEENEALREEVILLSELKSlpSEVERLRKEIQDKSEELHII--TSEKDKLFSEVV 785
Cdd:pfam17380 414 ------------KIQQQKVEMEQiRAEQEEARQREVRRLEEERA--REMERVRLEEQERQQQVERLrqQEEERKRKKLEL 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 786 HKESRVQGLLEEIgktkddlattqsNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVnlskeaqkfdsslgalK 865
Cdd:pfam17380 480 EKEKRDRKRAEEQ------------RRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIY----------------E 531
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348656 866 TELSYKTQELQEKTREVQERLNEMEQLKEQLENRdSTLQTVEREKTLI-----TEKLQQTLEEVKTLTQEK 931
Cdd:pfam17380 532 EERRREAEEERRKQQEMEERRRIQEQMRKATEER-SRLEAMEREREMMrqiveSEKARAEYEATTPITTIK 601
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
493-702 |
5.79e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 493 QENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNdlDEFEALERKTKKDQEmqliheisNLKNLVKHAevYNQD 572
Cdd:COG3883 32 LEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQ--AEIAEAEAEIEERRE--------ELGERARAL--YRSG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 573 lenELSSKVELLREKEDqikkLQEYIDsqKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKREsafLRSENLELK 652
Cdd:COG3883 100 ---GSVSYLDVLLGSES----FSDFLD--RLSALSKIADADADLLEELKADKAELEAKKAELEAKLAE---LEALKAELE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2217348656 653 EKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTS 702
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1788-1921 |
6.04e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1788 ETQKKVSEMEQLKKQIKDqsltLSKLeienLNLAQKLHENLEEmkSVMKERDNLRRVE---ETLKLERDQLKESLQETKA 1864
Cdd:PRK09039 47 EISGKDSALDRLNSQIAE----LADL----LSLERQGNQDLQD--SVANLRASLSAAEaerSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348656 1865 RDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDR 1921
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1289-1957 |
6.13e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 6.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1289 QELLPNVKEVSETQETM----NELELLTE-----QSTTKDSTTLARIEMERLRLN-----EKFQESQEEIKSLTKERDNL 1354
Cdd:COG4913 228 DALVEHFDDLERAHEALedarEQIELLEPirelaERYAAARERLAELEYLRAALRlwfaqRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1355 KTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKivSEMEQfkpkDSALLRIEIEMLGLSkrLQESH 1434
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLEREL--EERER----RRARLEALLAALGLP--LPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1435 DEMKSVAKEkddLQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELR---VNLSEKETEIstiq 1511
Cdd:COG4913 380 EEFAALRAE---AAALLEALEEELEALEEALAEAEAALRDLRRE-------LRELEAEIASLErrkSNIPARLLAL---- 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1512 kqLEAINDKLQNKIQ---------EIYEKEEQ-------------FNI----KQISEVQEKVNELKQ------FKEHRKA 1559
Cdd:COG4913 446 --RDALAEALGLDEAelpfvgeliEVRPEEERwrgaiervlggfaLTLlvppEHYAAALRWVNRLHLrgrlvyERVRTGL 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1560 KDSALQSIESKML--ELTNRLQESQEEIQIMIKEK---------EEMKRVQEALQIERdQLKENtKEIVAKMKESQEKEY 1628
Cdd:COG4913 524 PDPERPRLDPDSLagKLDFKPHPFRAWLEAELGRRfdyvcvdspEELRRHPRAITRAG-QVKGN-GTRHEKDDRRRIRSR 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1629 QFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETEnIRLTQILHENLEEMRSVTKERDDLRSVEETLkVERDQLKEN 1708
Cdd:COG4913 602 YVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAE-LDALQERREALQRLAEYSWDEIDVASAEREI-AELEAELER 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1709 LRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNE 1788
Cdd:COG4913 680 LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAAL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1789 TQKKVSEM-EQLKKQIKDQSLTLSKLE--IENL---------NLAQKLHENLEEMKSVMKERDNLRRVEetLKLERDQLK 1856
Cdd:COG4913 760 GDAVERELrENLEERIDALRARLNRAEeeLERAmrafnrewpAETADLDADLESLPEYLALLDRLEEDG--LPEYEERFK 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1857 ESLQETKARDLE-IQQELKTARmlsKEHKETVDKLREKIS------EKTIQIsDIQKDLDKSKDELQKKQdrqnhqvkpe 1929
Cdd:COG4913 838 ELLNENSIEFVAdLLSKLRRAI---REIKERIDPLNDSLKripfgpGRYLRL-EARPRPDPEVREFRQEL---------- 903
|
730 740
....*....|....*....|....*....
gi 2217348656 1930 kRLLSDGQQHLTESLREK-CSRIKELLKR 1957
Cdd:COG4913 904 -RAVTSGASLFDEELSEArFAALKRLIER 931
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1734-1884 |
6.23e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 6.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1734 QETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQikdqsltlskl 1813
Cdd:PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE----------- 569
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348656 1814 eienlNLAQKLHENLEEMKSVmkerdnlrrVEETLKLERDQLKESLQETKARDL-EIQQELKTARMLSKEHK 1884
Cdd:PRK00409 570 -----EAEKEAQQAIKEAKKE---------ADEIIKELRQLQKGGYASVKAHELiEARKRLNKANEKKEKKK 627
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
511-1165 |
6.29e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 511 VLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQEM-QLIHEISNLKNLVKHAEVYNQDLENE-----LSSKVELL 584
Cdd:TIGR00618 223 VLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLkQLRARIEELRAQEAVLEETQERINRArkaapLAAHIKAV 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 585 REKEDQIKKLQEYIDSQKLENIKMDLSYSL-----ESIEDPKQMKQTLFDAETVALDAKRESAFLR---SENLELKEKMK 656
Cdd:TIGR00618 303 TQIEQQAQRIHTELQSKMRSRAKLLMKRAAhvkqqSSIEEQRRLLQTLHSQEIHIRDAHEVATSIReisCQQHTLTQHIH 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 657 ELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPK---DLLCNLELEGKITDLQKELNKEV 733
Cdd:TIGR00618 383 TLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQqryAELCAAAITCTAQCEKLEKIHLQ 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 734 EENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHK----------ESRVQGLLEEIGKTKD 803
Cdd:TIGR00618 463 ESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPArqdidnpgplTRRMQRGEQTYAQLET 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 804 DLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQ 883
Cdd:TIGR00618 543 SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQ 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 884 ERLNEME--QLKEQLENRDSTLQTV--EREKTLITEKLQQTLEEVKTLTQEKDDLKQLQES-LQIERDQLKSDIHDTVNM 958
Cdd:TIGR00618 623 PEQDLQDvrLHLQQCSQELALKLTAlhALQLTLTQERVREHALSIRVLPKELLASRQLALQkMQSEKEQLTYWKEMLAQC 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 959 NIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKmvgidkkqdleakntqtLTADVKDNEI 1038
Cdd:TIGR00618 703 QTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV-----------------LKARTEAHFN 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1039 IEQQRKIfsLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT 1118
Cdd:TIGR00618 766 NNEEVTA--ALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSAT 843
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 2217348656 1119 CDRLAEVEEKLKEKSQQLQEKQQQllnvQEEMSEMQKKINEIENLKN 1165
Cdd:TIGR00618 844 LGEITHQLLKYEECSKQLAQLTQE----QAKIIQLSDKLNGINQIKI 886
|
|
| ATG17_like |
pfam04108 |
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ... |
1345-1553 |
6.96e-03 |
|
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs.
Pssm-ID: 427715 [Multi-domain] Cd Length: 360 Bit Score: 41.22 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1345 KSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQfkpkdsallrIEIEML 1424
Cdd:pfam04108 112 DSVEILRDALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELES----------LEEEMA 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1425 GLSKRLQESHDE-MKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSek 1503
Cdd:pfam04108 182 SLLESLTNHYDQcVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYERLQKLLEQKNSLIDELLSALQ-- 259
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1504 etEISTIQKQLEAINDKLQnKIQEIYEKEEQFNIKQISEVQEKVNELKQF 1553
Cdd:pfam04108 260 --LIAEIQSRLPEYLAALK-EFEERWEEEKETIEDYLSELEDLREFYEGF 306
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1764-1980 |
7.02e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1764 KLQEKIQELKAN------EHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKE 1837
Cdd:COG1196 217 ELKEELKELEAEllllklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1838 rdnLRRVEETLKLERDQLKEsLQETKARDLEIQQELKTARmlsKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQK 1917
Cdd:COG1196 297 ---LARLEQDIARLEERRRE-LEERLEELEEELAELEEEL---EELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348656 1918 KQDRQNHQVKPEKRLLSDGQQHLTESLREKcSRIKELLKRYSEMDDHYECLNRLSLDLEKEIE 1980
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELA-AQLEELEEAEEALLERLERLEEELEELEEALA 431
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1764-1938 |
7.11e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1764 KLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDqsltlsklEIENLNLAQKLHENLEEMKSvmkerdnlrr 1843
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELRE--------ELEKLEKLLQLLPLYQELEA---------- 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1844 veetLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQN 1923
Cdd:COG4717 137 ----LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
|
170
....*....|....*
gi 2217348656 1924 HQVKPEKRLLSDGQQ 1938
Cdd:COG4717 213 EELEEAQEELEELEE 227
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
744-1100 |
7.14e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 744 ILLSELKSLPSEVERLRKEIQDKsEELHIITSEKDKLFSEVVHKesrVQGLLEEIGKTKDDLATTQSNYKSTDqefqNFK 823
Cdd:PRK10929 7 FLMAWLLSWGAYAATAPDEKQIT-QELEQAKAAKTPAQAEIVEA---LQSALNWLEERKGSLERAKQYQQVID----NFP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 824 TLHMDFEQKyKMVLEENER---MNQEIVNLSKEAQKFDSSLgalkTELSYKTQELQEKTREVQERLNEMEQL----KEQL 896
Cdd:PRK10929 79 KLSAELRQQ-LNNERDEPRsvpPNMSTDALEQEILQVSSQL----LEKSRQAQQEQDRAREISDSLSQLPQQqteaRRQL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 897 ENRDSTLQTVEREKTLITE---KLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQ-EQLRNALES 972
Cdd:PRK10929 154 NEIERRLQTLGTPNTPLAQaqlTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYlQALRNQLNS 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 973 LKQhQETINTLKS--KISEE-------VSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNT----QTLtadvkdNEII 1039
Cdd:PRK10929 234 QRQ-REAERALESteLLAEQsgdlpksIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTlqvrQAL------NTLR 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1040 EQQ-------------RKIFSLIQEKNELQQmLESVIA-------------EKEQLKTDLKENIEMTIENQEElRLLGDE 1093
Cdd:PRK10929 307 EQSqwlgvsnalgealRAQVARLPEMPKPQQ-LDTEMAqlrvqrlryedllNKQPQLRQIRQADGQPLTAEQN-RILDAQ 384
|
....*..
gi 2217348656 1094 LKKQQEI 1100
Cdd:PRK10929 385 LRTQREL 391
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
837-948 |
7.52e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 7.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 837 LEENERMNQEIVNLSKE-----AQKFDSS--LGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVE-- 907
Cdd:COG3096 524 LEQRLRQQQNAERLLEEfcqriGQQLDAAeeLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARApa 603
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 908 -----------REKT--------LITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL 948
Cdd:COG3096 604 wlaaqdalerlREQSgealadsqEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1645-1816 |
7.69e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1645 EIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETI----------- 1713
Cdd:COG4942 42 ELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLralyrlgrqpp 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1714 ----------TRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQ----L 1779
Cdd:COG4942 122 lalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAErqklL 201
|
170 180 190
....*....|....*....|....*....|....*..
gi 2217348656 1780 ITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIE 1816
Cdd:COG4942 202 ARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1542-1804 |
8.16e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.66 E-value: 8.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1542 EVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMK 1621
Cdd:COG1340 16 KIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLNELREELD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1622 ESQEKEYQFLKMTAVNETQEKmcEIEHLKEQFETQKLNLENiETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE 1701
Cdd:COG1340 96 ELRKELAELNKAGGSIDKLRK--EIERLEWRQQTEVLSPEE-EKELVEKIKELEKELEKAKKALEKNEKLKELRAELKEL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1702 RDQLKEnlretitrdlkiqeelriAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLIT 1781
Cdd:COG1340 173 RKEAEE------------------IHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIE 234
|
250 260
....*....|....*....|...
gi 2217348656 1782 LKKDVNETQKKVSEMEQLKKQIK 1804
Cdd:COG1340 235 LQKELRELRKELKKLRKKQRALK 257
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
1670-1924 |
8.22e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.38 E-value: 8.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1670 LTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDL-----------KIQEELRI------------- 1725
Cdd:pfam06160 91 IEELLDDIEEDIKQILEELDELLESEEKNREEVEELKDKYRELRKTLLanrfsygpaidELEKQLAEieeefsqfeelte 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1726 ------AHMHLKEQQETIDKLRgivsEKTDKLSNMQKDLENsnaKLQEKIQELKANEHQLItlKKDVNETQKKV-SEMEQ 1798
Cdd:pfam06160 171 sgdyleAREVLEKLEEETDALE----ELMEDIPPLYEELKT---ELPDQLEELKEGYREME--EEGYALEHLNVdKEIQQ 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1799 LKKQIKDQSLTLSKLEIENLNLA-QKLHENLEEM-----------KSVMKERDNLRRVEETLKLERDQLKESLQETKAR- 1865
Cdd:pfam06160 242 LEEQLEENLALLENLELDEAEEAlEEIEERIDQLydllekevdakKYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSy 321
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348656 1866 -----DLEIQQELKTARmlsKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKQDRQNH 1924
Cdd:pfam06160 322 tlnenELERVRGLEKQL---EELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEE 382
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1326-1543 |
8.26e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 8.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1326 IEMERLR-LNEKFQESQEEIKSLTKERDNLKTIKEALEV----KHDQLKEHIRETLAKIQESQSKQEQSLNmkEKDNETT 1400
Cdd:PRK05771 40 LSNERLRkLRSLLTKLSEALDKLRSYLPKLNPLREEKKKvsvkSLEELIKDVEEELEKIEKEIKELEEEIS--ELENEIK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1401 KIVSEMEQFKP-KDsalLRIEIEMLGLSKRLQ--------------ESHDEMKSVAKEKDDLQRLQEVLQSESDQLKEnI 1465
Cdd:PRK05771 118 ELEQEIERLEPwGN---FDLDLSLLLGFKYVSvfvgtvpedkleelKLESDVENVEYISTDKGYVYVVVVVLKELSDE-V 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348656 1466 KEIVAKHLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEqfNIKQISEV 1543
Cdd:PRK05771 194 EEELKKLGFERLELEE----EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLE--IELERAEA 265
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1501-1626 |
8.73e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 8.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1501 SEKETEISTIQKQLEAiNDKLQNKIQEIyekEEQFNIKQiSEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQE 1580
Cdd:PRK12704 47 AKKEAEAIKKEALLEA-KEEIHKLRNEF---EKELRERR-NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQ 121
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1581 SQEEIQIMIKEKEEMKRVQ-------------EALQIERDQLKENTK-EIVAKMKESQEK 1626
Cdd:PRK12704 122 KQQELEKKEEELEELIEEQlqelerisgltaeEAKEILLEKVEEEARhEAAVLIKEIEEE 181
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
873-1161 |
9.12e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.43 E-value: 9.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 873 QELQEKTREVQERLNEMEQLKE-QLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSD 951
Cdd:PLN02939 106 EAIAAIDNEQQTNSKDGEQLSDfQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDAR 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 952 IHDTVNMNIDTQ---EQLRNALESLKQHQETINTLKSKISEEVSrnLHMEENtgetkdefqqkmvgIDKKQDLEAKNTQT 1028
Cdd:PLN02939 186 IKLAAQEKIHVEileEQLEKLRNELLIRGATEGLCVHSLSKELD--VLKEEN--------------MLLKDDIQFLKAEL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1029 LtadvkdnEIIEQQRKIFSLIQEKNELQ---QMLES--VIAEKEQLKTDLKEnIEMTIENQEELRLLGDELKKQQE--IV 1101
Cdd:PLN02939 250 I-------EVAETEERVFKLEKERSLLDaslRELESkfIVAQEDVSKLSPLQ-YDCWWEKVENLQDLLDRATNQVEkaAL 321
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348656 1102 AQEKNHAIKkegelsrtcDRLAEVEEKLKEksqqlqekqqqlLNVQEEMSE----MQKKINEIE 1161
Cdd:PLN02939 322 VLDQNQDLR---------DKVDKLEASLKE------------ANVSKFSSYkvelLQQKLKLLE 364
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
579-915 |
9.38e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 9.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 579 SKVELL---REKEDQIKKLQEyidSQKLEnikmdlsyslesIEDPKQMKQTLF--DAETVALDAKRESAFLRSEnLELKE 653
Cdd:PRK05771 7 KKVLIVtlkSYKDEVLEALHE---LGVVH------------IEDLKEELSNERlrKLRSLLTKLSEALDKLRSY-LPKLN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 654 KMKELATTYKqmendiqlYQSQLEAKKkmqvDLEKELQSAFNEITKLTSLIDgkvpkdllcnlELEGKITDLQKELNkev 733
Cdd:PRK05771 71 PLREEKKKVS--------VKSLEELIK----DVEEELEKIEKEIKELEEEIS-----------ELENEIKELEQEIE--- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 734 eenealreeviLLSELKSLPSEVERLRkeiqdKSEELHIITSEKDKLFSEVVHKESrVQGLLEEIGKTKDD----LATTQ 809
Cdd:PRK05771 125 -----------RLEPWGNFDLDLSLLL-----GFKYVSVFVGTVPEDKLEELKLES-DVENVEYISTDKGYvyvvVVVLK 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 810 SNYKSTDQEFQNFktlhmDFEqkyKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQErlnEM 889
Cdd:PRK05771 188 ELSDEVEEELKKL-----GFE---RLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYE---YL 256
|
330 340
....*....|....*....|....*.
gi 2217348656 890 EQLKEQLEnrdSTLQTVEREKTLITE 915
Cdd:PRK05771 257 EIELERAE---ALSKFLKTDKTFAIE 279
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
651-1408 |
9.67e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 9.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 651 LKEKMKELATTYKQMENDIQLYQSQLEAKKKmqvdlEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELN 730
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAK-----KKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLR 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 731 KEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLfSEVVHKESRVQGLLEEIGKtkddLATTQS 810
Cdd:TIGR00618 233 EALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEET-QERINRARKAAPLAAHIKA----VTQIEQ 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 811 NYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREvqERLNEME 890
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT--QHIHTLQ 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 891 QLKEQLENRDSTLQTverektlITEKLQQTLEEVKTLTQEKDDLKQ------LQESLQIERDQLK----SDIHDTVNMNI 960
Cdd:TIGR00618 386 QQKTTLTQKLQSLCK-------ELDILQREQATIDTRTSAFRDLQGqlahakKQQELQQRYAELCaaaiTCTAQCEKLEK 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 961 DTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVgidkkqDLEAKNTQTLTADVkdneiie 1040
Cdd:TIGR00618 459 IHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCI------HPNPARQDIDNPGP------- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1041 QQRKIFSLIQEKNELQQMLESV----IAEKEQLKTdLKENIEMTIENQEELRLLGDELKKQQEIVAQEknhaikkEGELS 1116
Cdd:TIGR00618 526 LTRRMQRGEQTYAQLETSEEDVyhqlTSERKQRAS-LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNI-------TVRLQ 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1117 RTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETErlelaqklnenyEEVK 1196
Cdd:TIGR00618 598 DLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR------------EHAL 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1197 SITKERKVLKELQKSFETERDHLRGYIREIeatglqtKEELKIAHIHLKEHQETIDELRRSVSE-KTAQIINTQDLEKSH 1275
Cdd:TIGR00618 666 SIRVLPKELLASRQLALQKMQSEKEQLTYW-------KEMLAQCQTLLRELETHIEEYDREFNEiENASSSLGSDLAARE 738
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348656 1276 TKLQEEIPVLHEEQEllPNVKEVSETQETMNELELLTEQSTTKdsttLARIEMERLRLNEKFQESQEEIKSLTKE-RDNL 1354
Cdd:TIGR00618 739 DALNQSLKELMHQAR--TVLKARTEAHFNNNEEVTAALQTGAE----LSHLAAEIQFFNRLREEDTHLLKTLEAEiGQEI 812
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 2217348656 1355 KTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQ 1408
Cdd:TIGR00618 813 PSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQ 866
|
|
| |
