|
Name |
Accession |
Description |
Interval |
E-value |
| KISc_CENP_E |
cd01374 |
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ... |
6-329 |
3.08e-171 |
|
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276825 [Multi-domain] Cd Length: 321 Bit Score: 528.83 E-value: 3.08e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 6 AVAVCVRVRPLNSREESLGEtaQVYWKTDNNVIYQVD-GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFA 84
Cdd:cd01374 1 KITVTVRVRPLNSREIGINE--QVAWEIDNDTIYLVEpPSTSFTFDHVFGGDSTNREVYELIAKPVVKSALEGYNGTIFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 85 YGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTqkMKPLIIREDVNRNVYV 164
Cdd:cd01374 79 YGQTSSGKTFTMSGDEDEPGIIPLAIRDIFSKIQDTPDREFLLRVSYLEIYNEKINDLLSPT--SQNLKIRDDVEKGVYV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 165 ADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPsnCEGSVKVSHLNLVDLAGSERAAQ 244
Cdd:cd01374 157 AGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEL--EEGTVRVSTLNLIDLAGSERAAQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 245 TGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS--FDETLTALQF 322
Cdd:cd01374 235 TGAAGVRRKEGSHINKSLLTLGTVISKLSEGKVGGHIPYRDSKLTRILQPSLGGNSRTAIICTITPAEshVEETLNTLKF 314
|
....*..
gi 2217348663 323 ASTAKYM 329
Cdd:cd01374 315 ASRAKKI 321
|
|
| KISc |
smart00129 |
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ... |
6-336 |
3.41e-143 |
|
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Pssm-ID: 214526 [Multi-domain] Cd Length: 335 Bit Score: 449.72 E-value: 3.41e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 6 AVAVCVRVRPLNSREESLGETAQVYW------KTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYN 79
Cdd:smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFpdkvgkTLTVRSPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVLEGYN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 80 GTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQKmkPLIIREDV 158
Cdd:smart00129 81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEKIDKReEGWQFSVKVSYLEIYNEKIRDLLNPSSK--KLEIREDE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 159 NRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSnceGSVKVSHLNLVDLAG 238
Cdd:smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSS---GSGKASKLNLVDLAG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 239 SERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDET 316
Cdd:smart00129 236 SERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPssSNLEET 315
|
330 340
....*....|....*....|
gi 2217348663 317 LTALQFASTAKYMKNTPYVN 336
Cdd:smart00129 316 LSTLRFASRAKEIKNKPIVN 335
|
|
| Kinesin |
pfam00225 |
Kinesin motor domain; |
12-327 |
7.43e-139 |
|
Kinesin motor domain;
Pssm-ID: 459720 [Multi-domain] Cd Length: 326 Bit Score: 437.00 E-value: 7.43e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 12 RVRPLNSREESLGETAQVY------WKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:pfam00225 1 RVRPLNEREKERGSSVIVSvesvdsETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVTIFAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 86 GQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLLCGTQKMK-PLIIREDVNRNVY 163
Cdd:pfam00225 81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsEFSVKVSYLEIYNEKIRDLLSPSNKNKrKLRIREDPKKGVY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 164 VADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSncEGSVKVSHLNLVDLAGSERAA 243
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGG--EESVKTGKLNLVDLAGSERAS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 244 QTGAA-GVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS--FDETLTAL 320
Cdd:pfam00225 239 KTGAAgGQRLKEAANINKSLSALGNVISALADKK-SKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSsnYEETLSTL 317
|
....*..
gi 2217348663 321 QFASTAK 327
Cdd:pfam00225 318 RFASRAK 324
|
|
| KISc |
cd00106 |
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ... |
6-327 |
1.00e-136 |
|
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276812 [Multi-domain] Cd Length: 326 Bit Score: 430.91 E-value: 1.00e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 6 AVAVCVRVRPLNSREeslGETAQVYWKTDNNVIYQVD-------GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGY 78
Cdd:cd00106 1 NVRVAVRVRPLNGRE---ARSAKSVISVDGGKSVVLDppknrvaPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSALEGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 79 NGTIFAYGQTASGKTYTMMGS-EDHLGVIPRAIHDIFQKIKKFP--DREFLLRVSYMEIYNETITDLLCGTQKmKPLIIR 155
Cdd:cd00106 78 NGTIFAYGQTGSGKTYTMLGPdPEQRGIIPRALEDIFERIDKRKetKSSFSVSASYLEIYNEKIYDLLSPVPK-KPLSLR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 156 EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKgepSNCEGSVKVSHLNLVD 235
Cdd:cd00106 157 EDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNR---EKSGESVTSSKLNLVD 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 236 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSF 313
Cdd:cd00106 234 LAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALADGQ-NKHIPYRDSKLTRLLQDSLGGNSKTIMIACISPssENF 312
|
330
....*....|....
gi 2217348663 314 DETLTALQFASTAK 327
Cdd:cd00106 313 EETLSTLRFASRAK 326
|
|
| KISc_KIF4 |
cd01372 |
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ... |
6-330 |
3.08e-106 |
|
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276823 [Multi-domain] Cd Length: 341 Bit Score: 343.93 E-value: 3.08e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 6 AVAVCVRVRPLNSREESLGETAQVYWkTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:cd01372 2 SVRVAVRVRPLLPKEIIEGCRICVSF-VPGEPQVTVGTDKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGYNATVLAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 86 GQTASGKTYTMMGS------EDHLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLLC-GTQKMKPLIIRED 157
Cdd:cd01372 81 GQTGSGKTYTMGTAytaeedEEQVGIIPRAIQHIFKKIEKKKDTfEFQLKVSFLEIYNEEIRDLLDpETDKKPTISIRED 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 158 VNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNC-----EGSVKVSHLN 232
Cdd:cd01372 161 SKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKNGPIAPmsaddKNSTFTSKFH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 233 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ-VGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV 311
Cdd:cd01372 241 FVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALGDESkKGAHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPA 320
|
330 340
....*....|....*....|.
gi 2217348663 312 S--FDETLTALQFASTAKYMK 330
Cdd:cd01372 321 DsnFEETLNTLKYANRARNIK 341
|
|
| KISc_KIF3 |
cd01371 |
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ... |
6-327 |
3.89e-100 |
|
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276822 [Multi-domain] Cd Length: 334 Bit Score: 325.95 E-value: 3.89e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 6 AVAVCVRVRPLNSREESLGETAQVYWKTDNNVIyQVDGS--------KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQG 77
Cdd:cd01371 2 NVKVVVRCRPLNGKEKAAGALQIVDVDEKRGQV-SVRNPkataneppKTFTFDAVFDPNSKQLDVYDETARPLVDSVLEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 78 YNGTIFAYGQTASGKTYTMMG--SEDHL-GVIPRAIHDIFQKIKKFPD-REFLLRVSYMEIYNETITDLLcGTQKMKPLI 153
Cdd:cd01371 81 YNGTIFAYGQTGTGKTYTMEGkrEDPELrGIIPNSFAHIFGHIARSQNnQQFLVRVSYLEIYNEEIRDLL-GKDQTKRLE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 154 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSncEGSVKVSHLNL 233
Cdd:cd01371 160 LKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEKGEDG--ENHIRVGKLNL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 234 VDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS- 312
Cdd:cd01371 238 VDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVDGK-STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADy 316
|
330
....*....|....*.
gi 2217348663 313 -FDETLTALQFASTAK 327
Cdd:cd01371 317 nYDETLSTLRYANRAK 332
|
|
| KISc_KIF1A_KIF1B |
cd01365 |
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ... |
7-336 |
1.53e-97 |
|
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Pssm-ID: 276816 [Multi-domain] Cd Length: 361 Bit Score: 319.68 E-value: 1.53e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 7 VAVCVRVRPLNSREESLGE-----------TAQVYWKTDNNVIYQVDGSKSFNFDRVF--HGNE-----TTKNVYEEIAA 68
Cdd:cd01365 3 VKVAVRVRPFNSREKERNSkcivqmsgketTLKNPKQADKNNKATREVPKSFSFDYSYwsHDSEdpnyaSQEQVYEDLGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 69 PIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDRE--FLLRVSYMEIYNETITDLLCGT 146
Cdd:cd01365 83 ELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQEQPGIIPRLCEDLFSRIADTTNQNmsYSVEVSYMEIYNEKVRDLLNPK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 147 QKMKP--LIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFrMILESREKGEPSNCEG 224
Cdd:cd01365 163 PKKNKgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVF-TIVLTQKRHDAETNLT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 225 SVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGG------FINYRDSKLTRILQNSLGG 298
Cdd:cd01365 242 TEKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskkkssFIPYRDSVLTWLLKENLGG 321
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2217348663 299 NAKTRIICTITPVS--FDETLTALQFASTAKYMKNTPYVN 336
Cdd:cd01365 322 NSKTAMIAAISPADinYEETLSTLRYADRAKKIVNRAVVN 361
|
|
| KISc_KHC_KIF5 |
cd01369 |
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ... |
7-327 |
3.06e-97 |
|
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276820 [Multi-domain] Cd Length: 325 Bit Score: 317.35 E-value: 3.06e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 7 VAVCVRVRPLNSREESLGETAQVYWKTDNNV-IYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:cd01369 4 IKVVCRFRPLNELEVLQGSKSIVKFDPEDTVvIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLNGYNGTIFAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 86 GQTASGKTYTMMGS---EDHLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLLcGTQKmKPLIIREDVNRN 161
Cdd:cd01369 84 GQTSSGKTYTMEGKlgdPESMGIIPRIVQDIFETIYSMDENlEFHVKVSYFEIYMEKIRDLL-DVSK-TNLSVHEDKNRG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 162 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESRekgepSNCEGSVKVSHLNLVDLAGSER 241
Cdd:cd01369 162 PYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQE-----NVETEKKKSGKLYLVDLAGSEK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 242 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTA 319
Cdd:cd01369 237 VSKTGAEGAVLDEAKKINKSLSALGNVINALTDGK-KTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNesETLST 315
|
....*...
gi 2217348663 320 LQFASTAK 327
Cdd:cd01369 316 LRFGQRAK 323
|
|
| KISc_C_terminal |
cd01366 |
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ... |
12-324 |
2.94e-96 |
|
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276817 [Multi-domain] Cd Length: 329 Bit Score: 314.53 E-value: 2.94e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 12 RVRPLNSREESLGETAQVYWKTDNNVI---YQVDGSKSFNFDRVFHGNETTKNVYEEIAaPIIDSAIQGYNGTIFAYGQT 88
Cdd:cd01366 9 RVRPLLPSEENEDTSHITFPDEDGQTIeltSIGAKQKEFSFDKVFDPEASQEDVFEEVS-PLVQSALDGYNVCIFAYGQT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 89 ASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDR--EFLLRVSYMEIYNETITDLLC-GTQKMKPLIIRED-VNRNVYV 164
Cdd:cd01366 88 GSGKTYTMEGPPESPGIIPRALQELFNTIKELKEKgwSYTIKASMLEIYNETIRDLLApGNAPQKKLEIRHDsEKGDTTV 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 165 ADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSvkvshLNLVDLAGSERAAQ 244
Cdd:cd01366 168 TNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGK-----LNLVDLAGSERLNK 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 245 TGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvgGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQF 322
Cdd:cd01366 243 SGATGDRLKETQAINKSLSALGDVISALRQKQ--SHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAesNLNETLNSLRF 320
|
..
gi 2217348663 323 AS 324
Cdd:cd01366 321 AS 322
|
|
| KISc_KIP3_like |
cd01370 |
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ... |
9-327 |
8.71e-93 |
|
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276821 [Multi-domain] Cd Length: 345 Bit Score: 305.42 E-value: 8.71e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 9 VCVRVRPLNSREESLG---------------------ETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIA 67
Cdd:cd01370 4 VAVRVRPFSEKEKNEGfrrivkvmdnhmlvfdpkdeeDGFFHGGSNNRDRRKRRNKELKYVFDRVFDETSTQEEVYEETT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 68 APIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPD-REFLLRVSYMEIYNETITDLLcgT 146
Cdd:cd01370 84 KPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQEPGLMVLTMKELFKRIESLKDeKEFEVSMSYLEIYNETIRDLL--N 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 147 QKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEgsV 226
Cdd:cd01370 162 PSSGPLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDKTASINQQ--V 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 227 KVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD-GQVGGFINYRDSKLTRILQNSLGGNAKTRII 305
Cdd:cd01370 240 RQGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALADpGKKNKHIPYRDSKLTRLLKDSLGGNCRTVMI 319
|
330 340
....*....|....*....|....
gi 2217348663 306 CTITP--VSFDETLTALQFASTAK 327
Cdd:cd01370 320 ANISPssSSYEETHNTLKYANRAK 343
|
|
| KISc_KLP2_like |
cd01373 |
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ... |
6-339 |
3.05e-92 |
|
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276824 [Multi-domain] Cd Length: 347 Bit Score: 304.05 E-value: 3.05e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 6 AVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:cd01373 2 AVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPKTFTFDHVADSNTNQESVFQSVGKPIVESCLSGYNGTIFAY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 86 GQTASGKTYTMMG-SEDHL-------GVIPRAIHDIFQKIKKFPDR-----EFLLRVSYMEIYNETITDLLCGTQkmKPL 152
Cdd:cd01373 82 GQTGSGKTYTMWGpSESDNesphglrGVIPRIFEYLFSLIQREKEKagegkSFLCKCSFLEIYNEQIYDLLDPAS--RNL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 153 IIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGepsNCEGSVKVSHLN 232
Cdd:cd01373 160 KLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKK---ACFVNIRTSRLN 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 233 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGF--INYRDSKLTRILQNSLGGNAKTRIICTITP 310
Cdd:cd01373 237 LVDLAGSERQKDTHAEGVRLKEAGNINKSLSCLGHVINALVDVAHGKQrhVCYRDSKLTFLLRDSLGGNAKTAIIANVHP 316
|
330 340 350
....*....|....*....|....*....|.
gi 2217348663 311 VS--FDETLTALQFASTAKYMKNTPYVNEVS 339
Cdd:cd01373 317 SSkcFGETLSTLRFAQRAKLIKNKAVVNEDT 347
|
|
| KISc_BimC_Eg5 |
cd01364 |
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ... |
7-337 |
5.23e-85 |
|
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276815 [Multi-domain] Cd Length: 353 Bit Score: 283.45 E-value: 5.23e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 7 VAVCVRVRPLNSREESLGETAQVYWKTDNNVI---YQVDGS----KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYN 79
Cdd:cd01364 4 IQVVVRCRPFNLRERKASSHSVVEVDPVRKEVsvrTGGLADksstKTYTFDMVFGPEAKQIDVYRSVVCPILDEVLMGYN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 80 GTIFAYGQTASGKTYTMMGSE-----------DHLGVIPRAIHDIFQKIKKfPDREFLLRVSYMEIYNETITDLL-CGTQ 147
Cdd:cd01364 84 CTIFAYGQTGTGKTYTMEGDRspneeytweldPLAGIIPRTLHQLFEKLED-NGTEYSVKVSYLEIYNEELFDLLsPSSD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 148 KMKPLIIREDVNR--NVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGepSNCEGS 225
Cdd:cd01364 163 VSERLRMFDDPRNkrGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHIKETT--IDGEEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 226 VKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGqvGGFINYRDSKLTRILQNSLGGNAKTRII 305
Cdd:cd01364 241 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER--APHVPYRESKLTRLLQDSLGGRTKTSII 318
|
330 340 350
....*....|....*....|....*....|....
gi 2217348663 306 CTITP--VSFDETLTALQFASTAKYMKNTPYVNE 337
Cdd:cd01364 319 ATISPasVNLEETLSTLEYAHRAKNIKNKPEVNQ 352
|
|
| KISc_KIF23_like |
cd01368 |
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ... |
7-327 |
2.74e-76 |
|
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276819 [Multi-domain] Cd Length: 345 Bit Score: 258.09 E-value: 2.74e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 7 VAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-DGSKS-------------FNFDRVFHGNETTKNVYEEIAAPIID 72
Cdd:cd01368 3 VKVYLRVRPLSKDELESEDEGCIEVINSTTVVLHPpKGSAAnksernggqketkFSFSKVFGPNTTQKEFFQGTALPLVQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 73 SAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKkfpdrEFLLRVSYMEIYNETITDLL-----CGTQ 147
Cdd:cd01368 83 DLLHGKNGLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIG-----GYSVFVSYIEIYNEYIYDLLepspsSPTK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 148 KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMIL---ESREKGEPSNCEG 224
Cdd:cd01368 158 KRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLvqaPGDSDGDVDQDKD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 225 SVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFIN---YRDSKLTRILQNSLGGNAK 301
Cdd:cd01368 238 QITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGTCIEVLRENQLQGTNKmvpFRDSKLTHLFQNYFDGEGK 317
|
330 340
....*....|....*....|....*...
gi 2217348663 302 TRIICTITPVS--FDETLTALQFASTAK 327
Cdd:cd01368 318 ASMIVNVNPCAsdYDETLHVMKFSAIAQ 345
|
|
| KISc_KIF9_like |
cd01375 |
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ... |
6-327 |
2.11e-75 |
|
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276826 [Multi-domain] Cd Length: 334 Bit Score: 254.81 E-value: 2.11e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 6 AVAVCVRVRPLNSREESL------GETAQVYWKTD--NNVIYQVDGSKSFNFDRVFHgNETTKNVYEEIAAPIIDSAIQG 77
Cdd:cd01375 1 KVQAFVRVRPTDDFAHEMikygedGKSISIHLKKDlrRGVVNNQQEDWSFKFDGVLH-NASQELVYETVAKDVVSSALAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 78 YNGTIFAYGQTASGKTYTMMGSED---HLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGT----QKMK 150
Cdd:cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTEnykHRGIIPRALQQVFRMIEERPTKAYTVHVSYLEIYNEQLYDLLSTLpyvgPSVT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 151 PLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKgEPSncEGSVKVSH 230
Cdd:cd01375 160 PMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSR-TLS--SEKYITSK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 231 LNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDgQVGGFINYRDSKLTRILQNSLGGNAKTRIICTIT- 309
Cdd:cd01375 237 LNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQAIIALSD-KDRTHVPFRQSKLTHVLRDSLGGNCNTVMVANIYg 315
|
330
....*....|....*....
gi 2217348663 310 -PVSFDETLTALQFASTAK 327
Cdd:cd01375 316 eAAQLEETLSTLRFASRVK 334
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
34-339 |
7.25e-67 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 238.10 E-value: 7.25e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 34 DNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDI 113
Cdd:COG5059 45 KSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKEL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 114 FQKIKKFPDR-EFLLRVSYMEIYNETITDLLcgTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYG 192
Cdd:COG5059 125 FSKLEDLSMTkDFAVSISYLEIYNEKIYDLL--SPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 193 ETKMNQRSSRSHTIFRMILESREKGEPSNCEGSvkvshLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKL 272
Cdd:COG5059 203 STEINDESSRSHSIFQIELASKNKVSGTSETSK-----LSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINAL 277
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348663 273 SDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAKYMKNTPYVNEVS 339
Cdd:COG5059 278 GDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPssNSFEETINTLKFASRAKSIKNKIQVNSSS 346
|
|
| KISc_KIF2_like |
cd01367 |
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ... |
9-327 |
1.98e-66 |
|
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276818 [Multi-domain] Cd Length: 328 Bit Score: 228.72 E-value: 1.98e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 9 VCVRVRPLNSREESLGETAQVYWKTDNNVI-----YQVDGSK-----SFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGY 78
Cdd:cd01367 4 VCVRKRPLNKKEVAKKEIDVVSVPSKLTLIvhepkLKVDLTKyienhTFRFDYVFDESSSNETVYRSTVKPLVPHIFEGG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 79 NGTIFAYGQTASGKTYTMMGS----EDHLGVIPRAIHDIFQKIKKFPDREFL-LRVSYMEIYNETITDLLcgtQKMKPLI 153
Cdd:cd01367 84 KATCFAYGQTGSGKTYTMGGDfsgqEESKGIYALAARDVFRLLNKLPYKDNLgVTVSFFEIYGGKVFDLL---NRKKRVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 154 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKgepsNCEGSVkvshLNL 233
Cdd:cd01367 161 LREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGT----NKLHGK----LSF 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 234 VDLAGSERAAQTGAAGV-RLKEGCNINRSLFILGQVIKKLSDGQVggFINYRDSKLTRILQNSL-GGNAKTRIICTITP- 310
Cdd:cd01367 233 VDLAGSERGADTSSADRqTRMEGAEINKSLLALKECIRALGQNKA--HIPFRGSKLTQVLKDSFiGENSKTCMIATISPg 310
|
330
....*....|....*...
gi 2217348663 311 -VSFDETLTALQFASTAK 327
Cdd:cd01367 311 aSSCEHTLNTLRYADRVK 328
|
|
| KISc_KID_like |
cd01376 |
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ... |
7-327 |
4.54e-65 |
|
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276827 [Multi-domain] Cd Length: 319 Bit Score: 224.69 E-value: 4.54e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 7 VAVCVRVRPLNSREESLGETAQVYWkTDNNVIYQVDG-----SKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 81
Cdd:cd01376 2 VRVAVRVRPFVDGTAGASDPSCVSG-IDSCSVELADPrnhgeTLKYQFDAFYGEESTQEDIYAREVQPIVPHLLEGQNAT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 82 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLrVSYMEIYNETITDLLcgTQKMKPLIIREDVNRN 161
Cdd:cd01376 81 VFAYGSTGAGKTFTMLGSPEQPGLMPLTVMDLLQMTRKEAWALSFT-MSYLEIYQEKILDLL--EPASKELVIREDKDGN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 162 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREkgepSNCEGSVKVSHLNLVDLAGSER 241
Cdd:cd01376 158 ILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRE----RLAPFRQRTGKLNLIDLAGSED 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 242 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvgGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTA 319
Cdd:cd01376 234 NRRTGNEGIRLKESGAINSSLFVLSKVVNALNKNL--PRIPYRDSKLTRLLQDSLGGGSRCIMVANIAPerTFYQDTLST 311
|
....*...
gi 2217348663 320 LQFASTAK 327
Cdd:cd01376 312 LNFAARSR 319
|
|
| PLN03188 |
PLN03188 |
kinesin-12 family protein; Provisional |
7-362 |
2.86e-63 |
|
kinesin-12 family protein; Provisional
Pssm-ID: 215621 [Multi-domain] Cd Length: 1320 Bit Score: 239.45 E-value: 2.86e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 7 VAVCVRVRPLNSREEslGETAQVYWKTDNNVIyqvdGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYG 86
Cdd:PLN03188 100 VKVIVRMKPLNKGEE--GEMIVQKMSNDSLTI----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYG 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 87 QTASGKTYTMMG-----SEDHL-----GVIPRAIHDIFQKIK----KFPDRE--FLLRVSYMEIYNETITDLLCGTQKmk 150
Cdd:PLN03188 174 QTGSGKTYTMWGpanglLEEHLsgdqqGLTPRVFERLFARINeeqiKHADRQlkYQCRCSFLEIYNEQITDLLDPSQK-- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 151 PLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEpSNCEGSVKVSH 230
Cdd:PLN03188 252 NLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSV-ADGLSSFKTSR 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 231 LNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD-GQVGG--FINYRDSKLTRILQNSLGGNAKTRIICT 307
Cdd:PLN03188 331 INLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEiSQTGKqrHIPYRDSRLTFLLQESLGGNAKLAMVCA 410
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348663 308 ITPVSF--DETLTALQFASTAKYMKNTPYVNEVSTDEalLKRYRKEIMDLKKQLEEV 362
Cdd:PLN03188 411 ISPSQSckSETFSTLRFAQRAKAIKNKAVVNEVMQDD--VNFLREVIRQLRDELQRV 465
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
803-1690 |
3.00e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 112.07 E-value: 3.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 803 DFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQE---RLNEMEQ----LKEQLENRD 875
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAlanEISRLEQqkqiLRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 876 STLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETI 955
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 956 NTLKSKISEEVSRNLHMEENtgetKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLE 1035
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDR----RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1036 sviaEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLaEVEEKLKeksqqlqekq 1115
Cdd:TIGR02168 472 ----EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI-SVDEGYE---------- 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1116 qqllnvqeemsemqkkiNEIENLKNElknkelTLEHMETERLELAQKLNENYEEvksitkerkvlKELQKSFETERDHLR 1195
Cdd:TIGR02168 537 -----------------AAIEAALGG------RLQAVVVENLNAAKKAIAFLKQ-----------NELGRVTFLPLDSIK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1196 GyiREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKShtklqeeipvLHEEQELLPNVKEVSE 1275
Cdd:TIGR02168 583 G--TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNA----------LELAKKLRPGYRIVTL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1276 TQETMNELELLTEQSTTKDSTTLARiEMERLRLNEKFQESQEEIKSLTKERdnlktikEALEVKHDQLKEHIRETLAKIQ 1355
Cdd:TIGR02168 651 DGDLVRPGGVITGGSAKTNSSILER-RREIEELEEKIEELEEKIAELEKAL-------AELRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1356 ESQskQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQ 1435
Cdd:TIGR02168 723 ELS--RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1436 LKENIKEIVAKHLETEEElkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNiKQI 1515
Cdd:TIGR02168 801 LREALDELRAELTLLNEE-------AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE-ELE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1516 SEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEivakm 1595
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE----- 947
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1596 kesqekEYQFLKMTAVNETQEKMCEIEHLKEQfetqklnLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLkv 1675
Cdd:TIGR02168 948 ------EYSLTLEEAEALENKIEDDEEEARRR-------LKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDL-- 1012
|
890
....*....|....*
gi 2217348663 1676 erDQLKENLRETITR 1690
Cdd:TIGR02168 1013 --TEAKETLEEAIEE 1025
|
|
| Motor_domain |
cd01363 |
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ... |
9-269 |
4.32e-24 |
|
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.
Pssm-ID: 276814 [Multi-domain] Cd Length: 170 Bit Score: 101.27 E-value: 4.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 9 VCVRVRPLNSREESlgetaqvywktdnnviyqvDGSKSFNFDRVFHGNETTKNVYEeIAAPIIDSAIQGYNG-TIFAYGQ 87
Cdd:cd01363 1 VLVRVNPFKELPIY-------------------RDSKIIVFYRGFRRSESQPHVFA-IADPAYQSMLDGYNNqSIFAYGE 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 88 TASGKTYTMMgsedhlGVIPRAIHDIFQKIKKfpdrefllrvsymeiynetitdllcgtqkmkpliiredvNRNVYVADL 167
Cdd:cd01363 61 SGAGKTETMK------GVIPYLASVAFNGINK---------------------------------------GETEGWVYL 95
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 168 TEEVVYTSEMALKWITKGEKSRHyGETKMNQRSSRSHTIFRMilesrekgepsncegsvkvshlnLVDLAGSERaaqtga 247
Cdd:cd01363 96 TEITVTLEDQILQANPILEAFGN-AKTTRNENSSRFGKFIEI-----------------------LLDIAGFEI------ 145
|
250 260
....*....|....*....|..
gi 2217348663 248 agvrlkegcnINRSLFILGQVI 269
Cdd:cd01363 146 ----------INESLNTLMNVL 157
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1057-1851 |
4.67e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 104.75 E-value: 4.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1057 ENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIE 1136
Cdd:TIGR02168 222 LRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1137 N----LKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL 1212
Cdd:TIGR02168 302 QqkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1213 KIAHIHLKEHQETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQELlPNVKEVSETQETMNELELLTEQSTT 1292
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARL---ERLEDRRERLQQEIEELLKKLEE-AELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1293 KDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKE---------HIRETLAKIQESQSKQEQ 1363
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAllknqsglsGILGVLSELISVDEGYEA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1364 SLN----------MKEKDNETTKIVSEMEQ------------------FKPKDSALLRIEIEMLGLSKRLQESHDEMKSV 1415
Cdd:TIGR02168 538 AIEaalggrlqavVVENLNAAKKAIAFLKQnelgrvtflpldsikgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1416 AKEKDDLQRLQEVLQSESDQLKENIK---------EIVAKH--------------LETEEELKVAHCCLKEQEETINELR 1472
Cdd:TIGR02168 618 LSYLLGGVLVVDDLDNALELAKKLRPgyrivtldgDLVRPGgvitggsaktnssiLERRREIEELEEKIEELEEKIAELE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1473 VNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEeqfniKQISEVQEKVNELKQFKEHRkakDSALQSIESKMLELTNR 1552
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALR-----KDLARLEAEVEQLEERIAQL---SKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1553 LQESQEEIQIMIKEKEEMKRVQEALQIERDQLKEntkeivakMKESQEKEYQFLKmTAVNETQEKMCEIEHlkeqfetqk 1632
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALRE--------ALDELRAELTLLN-EEAANLRERLESLER--------- 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1633 lNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETI 1712
Cdd:TIGR02168 832 -RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1713 DKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELkaNEHQLITLKKDVNETQKKVSEMEQLKKQIKdqSLTLSKLEIEN 1792
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERL--SEEYSLTLEEAEALENKIEDDEEEARRRLK--RLENKIKELGP 986
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348663 1793 LNLAQklhenLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETkarDLEIQQELKTA 1851
Cdd:TIGR02168 987 VNLAA-----IEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI---DREARERFKDT 1037
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1307-1951 |
4.62e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 101.67 E-value: 4.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1307 RLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQeqslnmkekdNETTKIVSEMEQFKp 1386
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL----------YALANEISRLEQQK- 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1387 kdsalLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEE 1466
Cdd:TIGR02168 305 -----QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1467 TINELRVNLSEKETEISTIQKQ-------LEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSAL 1539
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEierlearLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1540 QSIESkmlELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQ---------------EKEYQ 1604
Cdd:TIGR02168 460 EEALE---ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgilgvlselisvDEGYE 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1605 ---------FLKMTAVNETQEKMCEIEHLKEQfETQKLNLENIETENIRLTQILH-ENLEEMRSVTKERDDLRSVEETLK 1674
Cdd:TIGR02168 537 aaieaalggRLQAVVVENLNAAKKAIAFLKQN-ELGRVTFLPLDSIKGTEIQGNDrEILKNIEGFLGVAKDLVKFDPKLR 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1675 V--------------------ERDQLKENLR------ETITRD--------------LKIQEELRIAHMHLKEQQETIDK 1714
Cdd:TIGR02168 616 KalsyllggvlvvddldnaleLAKKLRPGYRivtldgDLVRPGgvitggsaktnssiLERRREIEELEEKIEELEEKIAE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1715 LRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKdvnetqkkvsEMEQLKKQIKDQSLTLSKLEIENLN 1794
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA----------EVEQLEERIAQLSKELTELEAEIEE 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1795 LAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKAR-----------DLEIQQELKTARMLSKEHKETV- 1862
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllneeaanlRERLESLERRIAATERRLEDLEe 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1863 --DKLREKISEKTIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHye 1940
Cdd:TIGR02168 846 qiEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK-- 923
|
730
....*....|.
gi 2217348663 1941 cLNRLSLDLEK 1951
Cdd:TIGR02168 924 -LAQLELRLEG 933
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1138-1871 |
4.80e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 98.21 E-value: 4.80e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1138 LKNELKNKELTL-----EHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL 1212
Cdd:TIGR02168 218 LKAELRELELALlvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1213 KIAHIHLKEHQETIDELRRSVSEKTAQIINTQ----DLEKSHTKLQEEIPVLHEEQELLPNvkEVSETQETMNELEllte 1288
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLEELEAQLEELEskldELAEELAELEEKLEELKEELESLEA--ELEELEAELEELE---- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1289 qsttkdsTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQsKQEQSLNMK 1368
Cdd:TIGR02168 372 -------SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-LKELQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1369 EKDNETTKIVSEMEQFKpkdSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKE------ 1442
Cdd:TIGR02168 444 ELEEELEELQEELERLE---EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNqsglsg 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1443 ---IVAKHLETEEELKVA---------HCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQF 1510
Cdd:TIGR02168 521 ilgVLSELISVDEGYEAAieaalggrlQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1511 NIKQISEVQEK----------------VNELKQFKEHRKAKDSALQSI--------------------ESKMLELTNRLQ 1554
Cdd:TIGR02168 601 LGVAKDLVKFDpklrkalsyllggvlvVDDLDNALELAKKLRPGYRIVtldgdlvrpggvitggsaktNSSILERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1555 ESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAkmkesqekeyqflkmtavnETQEKMCEIEHLKEQFETQKLN 1634
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK-------------------ELEELSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1635 LENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDK 1714
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1715 LRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVS----EMEQLKKQIKDQSLTLSKLEI 1790
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEallnERASLEEALALLRSELEELSE 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1791 ENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTAR-MLSKEHKETVDKLREKI 1869
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRLKRLENKI 981
|
..
gi 2217348663 1870 SE 1871
Cdd:TIGR02168 982 KE 983
|
|
| Microtub_bd |
pfam16796 |
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ... |
19-143 |
1.09e-19 |
|
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.
Pssm-ID: 465274 [Multi-domain] Cd Length: 144 Bit Score: 87.66 E-value: 1.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 19 REESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAApIIDSAIQGYNGTIFAYGQTASGKTYTMmg 98
Cdd:pfam16796 29 RPELLSEAQIDYPDETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQ-LVQSCLDGYNVCIFAYGQTGSGSNDGM-- 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2217348663 99 sedhlgvIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLL 143
Cdd:pfam16796 106 -------IPRAREQIFRFISSLkKGWKYTIELQFVEIYNESSQDLL 144
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1038-1892 |
3.67e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 92.05 E-value: 3.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1038 IAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRlaEVEEKLKEKsqqlQEKQQQ 1117
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY--EGYELLKEK----EALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1118 LLNVQEEMSEMQKkinEIENLKNELKNKELTLEHMETERLELAQKLNENYEEvksitkERKVLKELQKSFETERDHLRGY 1197
Cdd:TIGR02169 239 KEAIERQLASLEE---ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE------EQLRVKEKIGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1198 IREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQiintqdleksHTKLQEEIPVLHEEQELLpnvkeVSETQ 1277
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR----------RDKLTEEYAELKEELEDL-----RAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1278 etmnelELLTEQSTTKDSTTLARIEMERLrlnekfqesQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQES 1357
Cdd:TIGR02169 375 ------EVDKEFAETRDELKDYREKLEKL---------KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1358 QSKqeqslnMKEKDNETTKIVSEMEQFKPK----DSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSES 1433
Cdd:TIGR02169 440 EEE------KEDKALEIKKQEWKLEQLAADlskyEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1434 DQLKENIKEIV-------------AKHLET-----------EEELKVAHCC--LKEQEET------INELRVNLSEKETe 1481
Cdd:TIGR02169 514 EVLKASIQGVHgtvaqlgsvgeryATAIEVaagnrlnnvvvEDDAVAKEAIelLKRRKAGratflpLNKMRDERRDLSI- 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1482 istiqKQLEAINDKLQNKIQeiYEKEEQFNIKQISEVQEKVNELKQFKEHrkAKDSALQSIESKMLE------------- 1548
Cdd:TIGR02169 593 -----LSEDGVIGFAVDLVE--FDPKYEPAFKYVFGDTLVVEDIEAARRL--MGKYRMVTLEGELFEksgamtggsrapr 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1549 -LTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKeyqflkmtavneTQEKMCEIEHLKEQ 1627
Cdd:TIGR02169 664 gGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK------------IGEIEKEIEQLEQE 731
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1628 FETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRetitrdlkiQEELRIAHMHLKE 1707
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSK 802
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1708 QQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSK 1787
Cdd:TIGR02169 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1788 lEIENLnlaQKLHENLEEMKSVMKERdnlrrvEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKEtvdklre 1867
Cdd:TIGR02169 883 -RLGDL---KKERDELEAQLRELERK------IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE------- 945
|
890 900
....*....|....*....|....*
gi 2217348663 1868 kISEKTIQISDIQKDLDKSKDELQK 1892
Cdd:TIGR02169 946 -IPEEELSLEDVQAELQRVEEEIRA 969
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
479-1337 |
5.82e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.27 E-value: 5.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 479 LSEIEWNPATKLLNQENieSELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNDldEFEALERKtKKDQENELSSKVEL 558
Cdd:TIGR02168 222 LRELELALLVLRLEELR--EELEELQEELKEAEEELEELTAELQELEEKLEELRL--EVSELEEE-IEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 559 LREKEDQIKKLQEyidsqKLENIKMDLSYSLESIEDPKQMKQTLfDAETVALDAKRESafLRSENLELKEKMKELATTYK 638
Cdd:TIGR02168 297 ISRLEQQKQILRE-----RLANLERQLEELEAQLEELESKLDEL-AEELAELEEKLEE--LKEELESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 639 QMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITkltslidgkvpkdllcnlELEGKITDLQKELNKEVEENEALREEv 718
Cdd:TIGR02168 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIE------------------RLEARLERLEDRRERLQQEIEELLKK- 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 719 ILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLleeigktKDDLATTQSNYKSTDQEFQNFk 798
Cdd:TIGR02168 430 LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA-------ERELAQLQARLDSLERLQENL- 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 799 tlhMDFEQKYKMVLEENERMNQeIVNLSKEAQKFDSSLG-ALKTELSYKTQELQEKTREVQERlnEMEQLKEQLENRDST 877
Cdd:TIGR02168 502 ---EGFSEGVKALLKNQSGLSG-ILGVLSELISVDEGYEaAIEAALGGRLQAVVVENLNAAKK--AIAFLKQNELGRVTF 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 878 LQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTvnmnidtqEQLRNALESLKQ--HQETI 955
Cdd:TIGR02168 576 LPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV--------DDLDNALELAKKlrPGYRI 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 956 NTLKSKI--------SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQ-QRKIFSLIQE 1026
Cdd:TIGR02168 648 VTLDGDLvrpggvitGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQlRKELEELSRQ 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1027 KNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKE 1106
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1107 KSQQLQEKQQQLLNVQEEMSEMQKKI----NEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKE 1182
Cdd:TIGR02168 808 LRAELTLLNEEAANLRERLESLERRIaateRRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1183 LQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRrsvsektAQIINTQDlekshtKLQEEIPVLHE 1262
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE-------VRIDNLQE------RLSEEYSLTLE 954
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348663 1263 EQELLPNVKEvSETQETMNELELLTEQsttkdsttLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALE 1337
Cdd:TIGR02168 955 EAEALENKIE-DDEEEARRRLKRLENK--------IKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLE 1020
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
690-1511 |
7.89e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.89 E-value: 7.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 690 NLELEGKITDLQKELNKEVEENEALreevILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGL 769
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELA----LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 770 LEEIGKTkddlattqsnykstDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELS---YK 846
Cdd:TIGR02168 280 EEEIEEL--------------QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAeleEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 847 TQELQEKTREVQERLNEMEQLKEQLENRDSTLQT-VEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKS 925
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEELESRLEELEEqLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 926 DIHDTVNMNIDTQ----EQLRNALESLKQHQETINTLKSKISEEVSRNlhmEENTGETKDEFQQKMVGIDKKQDLEAkNT 1001
Cdd:TIGR02168 426 LLKKLEEAELKELqaelEELEEELEELQEELERLEEALEELREELEEA---EQALDAAERELAQLQARLDSLERLQE-NL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1002 QTLTADVKdnEIIEQQRKI-------FSLIQEKNELQQMLESVIAEKEQLKTD------------LKEN-------IEMT 1055
Cdd:TIGR02168 502 EGFSEGVK--ALLKNQSGLsgilgvlSELISVDEGYEAAIEAALGGRLQAVVVenlnaakkaiafLKQNelgrvtfLPLD 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1056 IENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT----------CDRLAEVEEKLKEKSQQLQEKQQQLLNV---- 1121
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvVDDLDNALELAKKLRPGYRIVTLDGDLVrpgg 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1122 ------QEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKE-----------RKVLKELQ 1184
Cdd:TIGR02168 660 vitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEleelsrqisalRKDLARLE 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1185 KSFET---ERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVsekTAQIINTQDLEKSHTKLQEEIPVLH 1261
Cdd:TIGR02168 740 AEVEQleeRIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI---EQLKEELKALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1262 EEQELLPNVKEVSETQETMNELELLTEQSTTKD-STTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKH 1340
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEElSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1341 DQLKEHIRETLAKIQESQSKqeqslnMKEKDNETTKIVSEMEqfkpkdsallRIEIEMLGLSKRLQESH-DEMKSVAKEK 1419
Cdd:TIGR02168 897 EELSEELRELESKRSELRRE------LEELREKLAQLELRLE----------GLEVRIDNLQERLSEEYsLTLEEAEALE 960
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1420 DDLQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNK 1499
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGPVNLAAIEE-------YEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
890
....*....|...
gi 2217348663 1500 IQEIYEK-EEQFN 1511
Cdd:TIGR02168 1034 FKDTFDQvNENFQ 1046
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
855-1682 |
8.39e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.90 E-value: 8.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 855 REVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMN 934
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 935 IDTQEQLRNALESLKQHQETINTLKSKISEEVSR--------NLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTA 1006
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEieqlleelNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1007 DVKDNEiiEQQRKIFSLI----QEKNELQQMLESVIAEKEQLKTDLKE--NIEMTIENQ-----EELRLLGDELKKQQEI 1075
Cdd:TIGR02169 316 ELEDAE--ERLAKLEAEIdkllAEIEELEREIEEERKRRDKLTEEYAElkEELEDLRAEleevdKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1076 VAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIE-----------NLKNELKN 1144
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEwkleqlaadlsKYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1145 KELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREI------EATGLQTKEELKIAHIH 1218
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvgerYATAIEVAAGNRLNNVV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1219 LKEH---QETIDEL-RRSVSEKTAQIIN-----TQDLEKSHTK--LQEEIPVLHEEQELLPNVKEVSETQETMNELELLT 1287
Cdd:TIGR02169 554 VEDDavaKEAIELLkRRKAGRATFLPLNkmrdeRRDLSILSEDgvIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAAR 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1288 EQ------------------STTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRE 1349
Cdd:TIGR02169 634 RLmgkyrmvtlegelfeksgAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1350 TLAKIQESQSKQEQSLNMKEKDNEttkivsEMEQFKPKDSAllrieiemlgLSKRLQESHDEMKSVAKEKDDLQRlqevl 1429
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKE------RLEELEEDLSS----------LEQEIENVKSELKELEARIEELEE----- 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1430 qsESDQLKENIKEIVAKHLETEEELKVAHccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEq 1509
Cdd:TIGR02169 773 --DLHKLEEALNDLEARLSHSRIPEIQAE--LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE- 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1510 fnikQISEVQEKVNELKQFKEhrkAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTK 1589
Cdd:TIGR02169 848 ----QIKSIEKEIENLNGKKE---ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1590 EIVAKM--KESQEKEYQFLKMTAVNETQEKMCEiehlkeqfETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLR 1667
Cdd:TIGR02169 921 ELKAKLeaLEEELSEIEDPKGEDEEIPEEELSL--------EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELK 992
|
890
....*....|....*
gi 2217348663 1668 SVEETLKVERDQLKE 1682
Cdd:TIGR02169 993 EKRAKLEEERKAILE 1007
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
846-1597 |
1.14e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.50 E-value: 1.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 846 KTQELQEKTREVQERL--NEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL 923
Cdd:TIGR02168 214 RYKELKAELRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 924 KSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKiSEEVSRNLHMEEntgETKDEFQQKMVGIDKKQDLEAKNTQT 1003
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESK-LDELAEELAELE---EKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1004 L--TADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKtdlkENIEMTIENQEEL--RLLGDELKKQQEIVAQE 1079
Cdd:TIGR02168 370 LesRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE----DRRERLQQEIEELlkKLEEAELKELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1080 KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENL----KNELKNKE-------LT 1148
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegvKALLKNQSglsgilgVL 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1149 LEHMETER-----LELAQKLNENYEEVKSITKERKVLkELQKSFETERDHL----RGYIREIEATGLQTKEELKIAHIHL 1219
Cdd:TIGR02168 526 SELISVDEgyeaaIEAALGGRLQAVVVENLNAAKKAI-AFLKQNELGRVTFlpldSIKGTEIQGNDREILKNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1220 KEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIP----------------------------VLHEEQELLPNVK 1271
Cdd:TIGR02168 605 KDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPgyrivtldgdlvrpggvitggsaktnssILERRREIEELEE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1272 EVSETQETMNELE-----LLTEQSTTKDSTTLARIEMERL------------RLNEKFQESQEEIKSLTKERDNLKTIKE 1334
Cdd:TIGR02168 685 KIEELEEKIAELEkalaeLRKELEELEEELEQLRKELEELsrqisalrkdlaRLEAEVEQLEERIAQLSKELTELEAEIE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1335 ALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQ-----FKPKDSALLRIEIEMLGLSKRLQESH 1409
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTllneeAANLRERLESLERRIAATERRLEDLE 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1410 DEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQL 1489
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1490 EAINDKLQNKIQEIYEKEEQFNIKQISEVQEkvnelkqFKEHRKAKDSALQSIESKMLELTNRLQE-------SQEEIQI 1562
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEE-------AEALENKIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEE 997
|
810 820 830
....*....|....*....|....*....|....*
gi 2217348663 1563 MIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKE 1597
Cdd:TIGR02168 998 LKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
621-1443 |
1.12e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 87.05 E-value: 1.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 621 SENLELKEKMKELATTYKQMENDIQLYQ-----SQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKvpkdllcNLELEg 695
Cdd:TIGR02169 197 RQQLERLRREREKAERYQALLKEKREYEgyellKEKEALERQKEAIERQLASLEEELEKLTEEISEL-------EKRLE- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 696 KITDLQKELNKEVEEnEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGK 775
Cdd:TIGR02169 269 EIEQLLEELNKKIKD-LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 776 TKDDLATTQSNYKSTDQEFqnfktlhMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTR 855
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEEL-------EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 856 EVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHD---TVN 932
Cdd:TIGR02169 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEaeaQAR 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 933 MNIDTQEQLRNALESLKQHQETI-NTLKSKISEEVSRNLHMEENTGetkdefqQKMVGIDKKQDLEAKNTQTLTADVKDN 1011
Cdd:TIGR02169 501 ASEERVRGGRAVEEVLKASIQGVhGTVAQLGSVGERYATAIEVAAG-------NRLNNVVVEDDAVAKEAIELLKRRKAG 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1012 EI-------IEQQRKIFSLIQEKNELQQMLESVIAEKEQLK--------TDLKENIEMTIENQEELRLL---GDELKKQQ 1073
Cdd:TIGR02169 574 RAtflplnkMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdTLVVEDIEAARRLMGKYRMVtleGELFEKSG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1074 EIV------AQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENlknelknkel 1147
Cdd:TIGR02169 654 AMTggsrapRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK---------- 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1148 tlehmetERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL-----KIAHIHLKEH 1222
Cdd:TIGR02169 724 -------EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALndleaRLSHSRIPEI 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1223 QETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMN--ELELLTEQSTTKDStTLAR 1300
Cdd:TIGR02169 797 QAELSKLEEEVSRIEARL---REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIekEIENLNGKKEELEE-ELEE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1301 IEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSE 1380
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS 952
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348663 1381 MEQFKPKdsaLLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEI 1443
Cdd:TIGR02169 953 LEDVQAE---LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1027-1853 |
2.06e-16 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 86.33 E-value: 2.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1027 KNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRllgdelkkQQEIVAQEKNHAIKKEGE-LSRTCDRLAEVEEKLK 1105
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLR--------QSVIDLQTKLQEMQMERDaMADIRRRESQSQEDLR 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1106 EKSQQLQEKQQQLLNVQEEMseMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSI---------TKE 1176
Cdd:pfam15921 145 NQLQNTVHELEAAKCLKEDM--LEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMstmhfrslgSAI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1177 RKVLKELqksfETERDHLRGYIREIE--ATGLQTKEELKIaHIHLKEHQETIDELrrsVSEKTAQIINTQDLEKSH---- 1250
Cdd:pfam15921 223 SKILREL----DTEISYLKGRIFPVEdqLEALKSESQNKI-ELLLQQHQDRIEQL---ISEHEVEITGLTEKASSArsqa 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1251 TKLQEEIPVLHEE--QELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDN 1328
Cdd:pfam15921 295 NSIQSQLEIIQEQarNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1329 LKtikealevkhDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEME-QFKPKDSALLRIEIEMLGLSKRLQ- 1406
Cdd:pfam15921 375 LD----------DQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRrELDDRNMEVQRLEALLKAMKSECQg 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1407 ESHDEMKSVAKEKDDLQRLQEvLQSESDQLKENIKEIVakhleteEELKVAHCCLKEQEETINELRVNLSEKETEISTIQ 1486
Cdd:pfam15921 445 QMERQMAAIQGKNESLEKVSS-LTAQLESTKEMLRKVV-------EELTAKKMTLESSERTVSDLTASLQEKERAIEATN 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1487 KQLEAINDKLQNKIQEIyekeeqfnikqisevqekvNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE 1566
Cdd:pfam15921 517 AEITKLRSRVDLKLQEL-------------------QHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQL 577
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1567 KEEMKRVQEALQIERDQLKentKEIVAKMKESQekEYQFLKmtavNETQEKMCEIEHLKEQFETQKLNLENIETENIR-L 1645
Cdd:pfam15921 578 VGQHGRTAGAMQVEKAQLE---KEINDRRLELQ--EFKILK----DKKDAKIRELEARVSDLELEKVKLVNAGSERLRaV 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1646 TQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDK 1725
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKV 728
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1726 LSNMQKDLENSNAK---LQEKIQELkanEHQLITLKKdvnetqkkvsEMEQLKKQIKDQSLTLSKLEIENlnlaQKLHEN 1802
Cdd:pfam15921 729 AMGMQKQITAKRGQidaLQSKIQFL---EEAMTNANK----------EKHFLKEEKNKLSQELSTVATEK----NKMAGE 791
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 2217348663 1803 LEEMKSvmKERdnlRRVEETLKLERDQLKESLQETKARDLEIQQELKTARM 1853
Cdd:pfam15921 792 LEVLRS--QER---RLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
939-1807 |
3.39e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 85.50 E-value: 3.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 939 EQLRNALESLKQHQETINTLKSKIsEEVSRNLHMEENTGETKDEFQQKMvgiDKKQDLEAkntqtlTADVKDNEIIEQQR 1018
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLII-DEKRQQLERLRREREKAERYQALL---KEKREYEG------YELLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1019 kifsliqeknelqQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKK-----EGELSRT 1093
Cdd:TIGR02169 240 -------------EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEkigelEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1094 CDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEI----ENLKNELKNKELTLEHMETERLELAQKLNENYEE 1169
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEErkrrDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1170 VKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQ----D 1245
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAadlsK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1246 LEKSHTKLQEEIPVLHEEQELLPnvKEVSETQETMNELEllTEQSTTKDSTTL--ARIE------MERLRLNEKFQESQE 1317
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQ--RELAEAEAQARASE--ERVRGGRAVEEVlkASIQgvhgtvAQLGSVGERYATAIE 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1318 -----EIKSLTKERDNlkTIKEALEVkhdqLKEHI--RET---LAKIQESQSKQEQS---------LNMKEKDNE----- 1373
Cdd:TIGR02169 543 vaagnRLNNVVVEDDA--VAKEAIEL----LKRRKagRATflpLNKMRDERRDLSILsedgvigfaVDLVEFDPKyepaf 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1374 -----TTKIVSEMEQFKPkdsalLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIvakhl 1448
Cdd:TIGR02169 617 kyvfgDTLVVEDIEAARR-----LMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGL----- 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1449 etEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQfnikqisevqekvneLKQF 1528
Cdd:TIGR02169 687 --KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED---------------LSSL 749
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1529 KEHRKAKDSALQSIESKMLELTNRLQESQEEIQiMIKEKEEMKRVQEaLQIERDQLKENTKEIVAKMK--ESQEKEYQFL 1606
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEEDLHKLEEALN-DLEARLSHSRIPE-IQAELSKLEEEVSRIEARLReiEQKLNRLTLE 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1607 KMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSveetlkvERDQLKENLRE 1686
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK-------ERDELEAQLRE 900
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1687 TITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLEN--SNAKLQEKIQELKANEHQLitlkKDVNet 1764
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelSLEDVQAELQRVEEEIRAL----EPVN-- 974
|
890 900 910 920
....*....|....*....|....*....|....*....|...
gi 2217348663 1765 QKKVSEMEQLKKQIKDQSLTLSKLEIENLNLaQKLHENLEEMK 1807
Cdd:TIGR02169 975 MLAIQEYEEVLKRLDELKEKRAKLEEERKAI-LERIEEYEKKK 1016
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1334-1933 |
5.45e-16 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 84.73 E-value: 5.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1334 EALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQ-FKPKDSALLRIEIEMLGLSKRLQEshdeM 1412
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLReINEISSELPELREELEKLEKEVKE----L 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1413 KSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRvnlsEKETEISTIQKQLEAI 1492
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE----LEEKVKELKELK----EKAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1493 NDKLQN--KIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKakdsalqsieskmleltnRLQESQEEIQIMIKEKEEM 1570
Cdd:PRK03918 306 LDELREieKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK------------------ELEKRLEELEERHELYEEA 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1571 KRVQEALQIERDQLKENTKEIVAKMKESQEKEyqflKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIR------ 1644
Cdd:PRK03918 368 KAKKEELERLKKRLTGLTPEKLEKELEELEKA----KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgr 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1645 -LTQilHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLREtITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKT 1723
Cdd:PRK03918 444 eLTE--EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE-LEKVLKKESELIKLKELAEQLKELEEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1724 DKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLA-QKLHEN 1802
Cdd:PRK03918 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERlKELEPF 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1803 LEEMKSVMKERDNLRRVEETLKLERDQLKES---LQETKARDLEIQQELKTARML--SKEHKETVDK----------LRE 1867
Cdd:PRK03918 601 YNEYLELKDAEKELEREEKELKKLEEELDKAfeeLAETEKRLEELRKELEELEKKysEEEYEELREEylelsrelagLRA 680
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348663 1868 KISEKTIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDgqqhlTESLREKCSRIKELLKRYS 1933
Cdd:PRK03918 681 ELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER-----VEELREKVKKYKALLKERA 741
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1382-2167 |
6.01e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 6.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1382 EQFKPKDSALLRIEIEMLGLskRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccL 1461
Cdd:TIGR02168 213 ERYKELKAELRELELALLVL--RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE-------I 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1462 KEQEETINELRVNLSEKETEISTIQKQLEAINDKLQnKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQS 1541
Cdd:TIGR02168 284 EELQKELYALANEISRLEQQKQILRERLANLERQLE-ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1542 IESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQL---KENTKEIVAKMKESQEKEYQFLKMTAVNETQEkm 1618
Cdd:TIGR02168 363 LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLearLERLEDRRERLQQEIEELLKKLEEAELKELQA-- 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1619 cEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLkenlrETITRDLKIqeel 1698
Cdd:TIGR02168 441 -ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL-----EGFSEGVKA---- 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1699 riahmhLKEQQETIDKLRGIVSEK------------TDKLSNMQKDLENSNAKLQEKIQELKANEHQLITL--KKDVNET 1764
Cdd:TIGR02168 511 ------LLKNQSGLSGILGVLSELisvdegyeaaieAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFlpLDSIKGT 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1765 QKKVSEMEQLKKQikDQSLTLSKLEIENLNLAQKLHENL-------EEMKSVMKERDNLRRVEETLKLERDQLKESLQET 1837
Cdd:TIGR02168 585 EIQGNDREILKNI--EGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVIT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1838 KARD------LEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDGQ 1911
Cdd:TIGR02168 663 GGSAktnssiLERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1912 QHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKELSMRVKANLSlpyLQTKHIEKLFTANQRCSMEF 1991
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK---ALREALDELRAELTLLNEEA 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1992 HRIMKKLKYVlsyvtkikEEQHESINKFEMDFIDEVEKQKELLIKIQHLQQDCDVPSRELRD-LKLNQNMDLHIEEILKD 2070
Cdd:TIGR02168 820 ANLRERLESL--------ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESeLEALLNERASLEEALAL 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2071 fSESEFPSIKTEFQQVLSNRKEMTQFLEEwLNTRfdIEKLKNGIQKENDRICQVNNFFNNRIIAIMNESTEFEERSATIS 2150
Cdd:TIGR02168 892 -LRSELEELSEELRELESKRSELRRELEE-LREK--LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDE 967
|
810
....*....|....*..
gi 2217348663 2151 KEWEQDLKSLKEKNEKL 2167
Cdd:TIGR02168 968 EEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
981-1527 |
2.66e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 2.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 981 DEFQQKMVGIDKKQDLEAKNTQTLTADV--KDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIEN 1058
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELaeLEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1059 QEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENL 1138
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1139 KNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRgyiREIEATGLQTKEELKIAHIH 1218
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE---AELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1219 LKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEqsttkdsTTL 1298
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE-------AAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1299 ARIEMERLRLNEkfQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSlnmKEKDNETTKIV 1378
Cdd:COG1196 545 AAALQNIVVEDD--EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL---READARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1379 SEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAH 1458
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348663 1459 CCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQ------ISEVQEKVNELKQ 1527
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEElpeppdLEELERELERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1298-1836 |
3.76e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 3.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1298 LARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQslnmkekdnETTKI 1377
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR---------LEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1378 VSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKva 1457
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE-- 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1458 hcclkEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQfNIKQISEVQEKVNELKQFKEHRKAKDS 1537
Cdd:COG1196 383 -----ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA-LAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1538 ALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQ---------------EKE 1602
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGlrglagavavligveAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1603 YQFLKMTAVNETQEKMCE--------IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLK 1674
Cdd:COG1196 537 EAALEAALAAALQNIVVEddevaaaaIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1675 VERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQL 1754
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1755 ITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESL 1834
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
..
gi 2217348663 1835 QE 1836
Cdd:COG1196 777 EA 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1239-1848 |
4.71e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 81.65 E-value: 4.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1239 QIINTQDLEKSHTKLQEEIPVLHEEQEllpNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFqesqEE 1318
Cdd:PRK03918 153 QILGLDDYENAYKNLGEVIKEIKRRIE---RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL----EK 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1319 IKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSlnmKEKDNETTKIVSEMEQFKPKdsallriEIEM 1398
Cdd:PRK03918 226 LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL---KKEIEELEEKVKELKELKEK-------AEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1399 LGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQ---SESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRvnl 1475
Cdd:PRK03918 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEeriKELEEKEERLEELKKKLKELEKRLEE----LEERHELYEEAK--- 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1476 sEKETEISTIQKQLEAIN-DKLQNKIQEIYEKEEQFNiKQISEVQEKVNELKQFKEHRKAKDSALQSIESKmLELTNRLQ 1554
Cdd:PRK03918 369 -AKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIE-EEISKITARIGELKKEIKELKKAIEELKKAKGK-CPVCGREL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1555 ESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKE-SQEKEYQFLKMTA--VNETQEKMC-----EIEHLKE 1626
Cdd:PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlKKESELIKLKELAeqLKELEEKLKkynleELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1627 QFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITR-DLKIQE--------- 1696
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEElEERLKElepfyneyl 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1697 ELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHqlitlKKDVNETQKKVSEMEQLKK 1776
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY-----EELREEYLELSRELAGLRA 680
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348663 1777 QIKdqslTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQEL 1848
Cdd:PRK03918 681 ELE----ELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
692-1255 |
4.99e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 81.65 E-value: 4.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 692 ELEGKITDLQKELNKEVEENEALREeviLLSELKSLPSEVERLRKEIQDKSEELHIITSEK---DKLFSEVVHKESRVQG 768
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKE---KEKELEEVLREINEISSELPELREELEKLEKEVkelEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 769 LLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQ------KYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTE 842
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 843 LSyKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITE-KLQQTLEEVKTLTQEKDDLKQLQESLQIERD 921
Cdd:PRK03918 330 IK-ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERlKKRLTGLTPEKLEKELEELEKAKEEIEEEIS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 922 QLKSDIHDTVNmnidTQEQLRNALESLKQHQETINTLKSKISEEVSRNLhMEENTGETKDEFQQKMVGIDKKQDLEAKnt 1001
Cdd:PRK03918 409 KITARIGELKK----EIKELKKAIEELKKAKGKCPVCGRELTEEHRKEL-LEEYTAELKRIEKELKEIEEKERKLRKE-- 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1002 qtltaDVKDNEIIEQQRKIFSliqekneLQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKN 1081
Cdd:PRK03918 482 -----LRELEKVLKKESELIK-------LKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1082 HAIKKEGELSRTCDRLAEVEEKLKE-KSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELA 1160
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAElLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1161 QKLNENYEEVKSITKERKVLKELQKSF-ETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQ 1239
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYsEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
570
....*....|....*.
gi 2217348663 1240 IINTQDLEKSHTKLQE 1255
Cdd:PRK03918 710 KKELEKLEKALERVEE 725
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
521-1350 |
8.84e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.88 E-value: 8.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 521 KEEMELKLKEKNDLDEFEALERKTKKDQENELSSKVELLREkedQIKKLQEYIDSqkLENIKMDLSYSLESIEDPKQMKQ 600
Cdd:TIGR02169 197 RQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALER---QKEAIERQLAS--LEEELEKLTEEISELEKRLEEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 601 TLFDAETVALDAKRESaflrsENLELKEKMKELattykqmENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLID 680
Cdd:TIGR02169 272 QLLEELNKKIKDLGEE-----EQLRVKEKIGEL-------EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 681 gkvpkdllcnlELEGKITDLQKELNKeveenealreeviLLSELKSLPSEVERLRKEIQdkseelhiitsEKDKLFSEVV 760
Cdd:TIGR02169 340 -----------ELEREIEEERKRRDK-------------LTEEYAELKEELEDLRAELE-----------EVDKEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 761 HKESRVQGLLEEIGKTKDDLATTQSNykstdqefqnfktlhmdfeqkykmVLEENERMNQEIVNLSKEAQKFDSSLGALK 840
Cdd:TIGR02169 385 DELKDYREKLEKLKREINELKRELDR------------------------LQEELQRLSEELADLNAAIAGIEAKINELE 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 841 TELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIER 920
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 921 DqlksDIHDTVNMNIDTQEQLRNALES-----------------------LKQHQETINTL----KSKISEEVSRNLHME 973
Cdd:TIGR02169 521 Q----GVHGTVAQLGSVGERYATAIEVaagnrlnnvvveddavakeaielLKRRKAGRATFlplnKMRDERRDLSILSED 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 974 ENTGETKD--EFQQKMVGIDKK--------QDLEAKNTQ-------TLTADVKD-----------------------NEI 1013
Cdd:TIGR02169 597 GVIGFAVDlvEFDPKYEPAFKYvfgdtlvvEDIEAARRLmgkyrmvTLEGELFEksgamtggsraprggilfsrsepAEL 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1014 IEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT 1093
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1094 CDRLAEVEEKLKEKSQQLQEKQQQLLNVQEE--MSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVK 1171
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALNDLEARlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1172 SITKERKVLKELQKSFETERDHLRGYIREIEATGLQTK---EELKIAHIHLK----EHQETIDELRRSVSEKTAQIintQ 1244
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalRDLESRLGDLKkerdELEAQLRELERKIEELEAQI---E 913
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1245 DLEKSHTKLQEEIPVLHEE-QELLPNVKEVSETQETMNELELLTE--QSTTKDSTTLARIEMerlRLNEKFQESQEEIKS 1321
Cdd:TIGR02169 914 KKRKRLSELKAKLEALEEElSEIEDPKGEDEEIPEEELSLEDVQAelQRVEEEIRALEPVNM---LAIQEYEEVLKRLDE 990
|
890 900
....*....|....*....|....*....
gi 2217348663 1322 LTKERDNLKTIKEALEVKHDQLKEHIRET 1350
Cdd:TIGR02169 991 LKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
346-1180 |
1.80e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 1.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 346 KRYRkeimDLKKQLEEVSLetRAQAMEKDQLAQLLEEKDLLQKVQNEKIENLTRMLVTsssltLQQELKAKRKRRvtwcl 425
Cdd:TIGR02168 213 ERYK----ELKAELRELEL--ALLVLRLEELREELEELQEELKEAEEELEELTAELQE-----LEEKLEELRLEV----- 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 426 GKINKMKNSNYADQFNIPTNITTKTHKLsinllREIDESvcsesdvfsntldtLSEIEWNPATKLLNQENIESELNSLRA 505
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQK-----QILRER--------------LANLERQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 506 DYDNLVLDYEQLRTEKEEMELKLKEKNdlDEFEALERKTKKDQE--NELSSKVELLREKEDQIKKLQEYIDSQklenikm 583
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELE--AELEELESRLEELEEqlETLRSKVAQLELQIASLNNEIERLEAR------- 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 584 dlsysLESIEDpkqmKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQlyqsQLEAKKKMQVDLEK 663
Cdd:TIGR02168 409 -----LERLED----RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE----ALEELREELEEAEQ 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 664 ELQSAFNEITKLTSLIDgkVPKDLLCNLElegkitDLQKELNKEVEENEALREEVILLSELKSLPSEVER-----LRKEI 738
Cdd:TIGR02168 476 ALDAAERELAQLQARLD--SLERLQENLE------GFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAaieaaLGGRL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 739 Q-----DKSEELHIITSEKDKLFSEV------VHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQN-----FKTLHM 802
Cdd:TIGR02168 548 QavvveNLNAAKKAIAFLKQNELGRVtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsylLGGVLV 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 803 --DFEQKYKMVLEENERMN-----QEIVN----LSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQL 871
Cdd:TIGR02168 628 vdDLDNALELAKKLRPGYRivtldGDLVRpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 872 ENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQH 951
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 952 QETINTLKSKISEEVSRNLHMEENTGETKDEFQQkmvgidkkqdleakntqtltadvkdneiieQQRKIFSLIQEKNELQ 1031
Cdd:TIGR02168 788 EAQIEQLKEELKALREALDELRAELTLLNEEAAN------------------------------LRERLESLERRIAATE 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1032 QMLEsviaEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNhaiKKEGELSRTCDRLAEVEEKLKEKSQQL 1111
Cdd:TIGR02168 838 RRLE----DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA---SLEEALALLRSELEELSEELRELESKR 910
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348663 1112 QEKQQQLLNVQEEMSEMQKKINEIENLKNELKNK-----ELTLEHMETERLELAQKLNENYEEVKSITKERKVL 1180
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERlseeySLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1052-1747 |
7.71e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 7.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1052 IEMTIENQEELRLLGDELKKQQEIVAQEKNHA-----IKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMS 1126
Cdd:COG1196 181 LEATEENLERLEDILGELERQLEPLERQAEKAeryreLKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1127 EMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGL 1206
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1207 QTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIpvLHEEQELLPNVKEVSETQETMNELELL 1286
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1287 TEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLN 1366
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1367 MKEKDNETTKIVSEMEQfKPKDSALLRIEIEMLGLSKRLQEshdemksvAKEKDDLQRLQEVLQSESDQLKENIkeivak 1446
Cdd:COG1196 499 AEADYEGFLEGVKAALL-LAGLRGLAGAVAVLIGVEAAYEA--------ALEAALAAALQNIVVEDDEVAAAAI------ 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1447 hleteEELKvahcclKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELK 1526
Cdd:COG1196 564 -----EYLK------AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1527 QFKEHRKAKDSALQSIESkmLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQfl 1606
Cdd:COG1196 633 EAALRRAVTLAGRLREVT--LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE-- 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1607 kmtaVNETQEKMCEIEHLKEQFETQKLNL-ENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQL-KENL 1684
Cdd:COG1196 709 ----LAEAEEERLEEELEEEALEEQLEAErEELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgPVNL 784
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348663 1685 RetitrdlkiqeelriAhmhLKEQQEtidklrgiVSEKTDKLSNMQKDLENSNAKLQEKIQEL 1747
Cdd:COG1196 785 L---------------A---IEEYEE--------LEERYDFLSEQREDLEEARETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
807-1356 |
9.29e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 9.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 807 KYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKT 886
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 887 LITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEV 966
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 967 SRNLHMEENTGETKDEFQQKMVGIDK-KQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLK 1045
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERlEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1046 TDLKENIEMTIENQEELRLLGDELKKQQEIVAQE-----KNHAIKKEGELSRTCDRLAEVEEKLkEKSQQLQEKQQQLLN 1120
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFlegvkAALLLAGLRGLAGAVAVLIGVEAAY-EAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1121 VQEEMSEMQKkinEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIRE 1200
Cdd:COG1196 552 VVEDDEVAAA---AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1201 IEAtglqtkEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETM 1280
Cdd:COG1196 629 AAR------LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348663 1281 NELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQE 1356
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1049-1682 |
2.92e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 75.87 E-value: 2.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1049 KENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEM 1128
Cdd:PRK03918 178 IERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1129 QKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEAtgLQT 1208
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE--LEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1209 KEElkiahiHLKEHQETIDELRRSVSEktaqiintqdLEKSHtKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTE 1288
Cdd:PRK03918 336 KEE------RLEELKKKLKELEKRLEE----------LEERH-ELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1289 QSTTkdsttlarIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLakiqesqsKQEQSLNMK 1368
Cdd:PRK03918 399 AKEE--------IEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEL--------LEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1369 EKDNETTKIVSEMEQFKPKdsaLLRIEIEMLGLSK--RLQESHDEMKSVAKEkddlqrLQEVLQSESDQLKENIKEIVAK 1446
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKE---LRELEKVLKKESEliKLKELAEQLKELEEK------LKKYNLEELEKKAEEYEKLKEK 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1447 HLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLqnkiqeiyekeEQFNIKQISEVQEKVNELK 1526
Cdd:PRK03918 534 LIKLKGEIKS----LKKELEKLEELKKKLAELEKKLDELEEELAELLKEL-----------EELGFESVEELEERLKELE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1527 QFKEhrkakdsalqsiesKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFL 1606
Cdd:PRK03918 599 PFYN--------------EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEEL 664
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348663 1607 KmtavNETQEKMCEIEHLKEQFETqklnLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKE 1682
Cdd:PRK03918 665 R----EEYLELSRELAGLRAELEE----LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKK 732
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
939-1525 |
3.74e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 75.49 E-value: 3.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 939 EQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQR 1018
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1019 KIFsliqekNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHaIKKEGELSRTCDRLA 1098
Cdd:PRK03918 238 EEI------EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY-IKLSEFYEEYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1099 EVEEKLKEKSqqlqekqQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMET--ERLELAQKLNENYEEVKS---- 1172
Cdd:PRK03918 311 EIEKRLSRLE-------EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEErhELYEEAKAKKEELERLKKrltg 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1173 -----ITKERKVLKELQKSFETERDHLRGYIREIEatglQTKEELKIAHIHLKEHQETIDELRRSVSEK---------TA 1238
Cdd:PRK03918 384 ltpekLEKELEELEKAKEEIEEEISKITARIGELK----KEIKELKKAIEELKKAKGKCPVCGRELTEEhrkelleeyTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1239 QIIN-TQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQE 1317
Cdd:PRK03918 460 ELKRiEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1318 EIKSLTKERDNLKTIK---EALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKekdnettkiVSEMEQFKPKDSALLRI 1394
Cdd:PRK03918 540 EIKSLKKELEKLEELKkklAELEKKLDELEEELAELLKELEELGFESVEELEER---------LKELEPFYNEYLELKDA 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1395 EIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLK-----ENIKEIVAKHLETEEELKVAHCCLKEQEETIN 1469
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRELAGLRAELEELEKRRE 690
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1470 ELRVNLSEKETEISTIQKQLEAIND--KLQNKIQEIYEKEEQFNIKQISEVQEKVNEL 1525
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAKKELEKleKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1310-1893 |
3.75e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 3.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1310 EKFQESQEEIK-----SLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQslnmkekdnETTKIVSEMEQF 1384
Cdd:COG1196 213 ERYRELKEELKeleaeLLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEE---------LRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1385 KPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKvahcclkEQ 1464
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE-------EA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1465 EETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEvQEKVNELKQFKEHRKAKDSALQSIES 1544
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE-EALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1545 KMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHL 1624
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1625 KEQFE--TQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRiah 1702
Cdd:COG1196 516 LAGLRglAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL--- 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1703 mhlkeQQETIDKLRGIVSEKTDKLSNMQKDLENSnakLQEKIQELKANEHQLITLKKDVNETQKKVSEMEqlkkqikDQS 1782
Cdd:COG1196 593 -----ARGAIGAAVDLVASDLREADARYYVLGDT---LLGRTLVAARLEAALRRAVTLAGRLREVTLEGE-------GGS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1783 LTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETV 1862
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570 580 590
....*....|....*....|....*....|.
gi 2217348663 1863 DKLREKISEKTIQISDIQKDLDKSKDELQKK 1893
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDLEELERE 768
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1015-1793 |
1.91e-12 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 73.47 E-value: 1.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1015 EQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTC 1094
Cdd:pfam02463 206 AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1095 DRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKIN-----------EIENLKNELKNKELTLEHMETERLELAQKL 1163
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKkaekelkkekeEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1164 NENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDElRRSVSEKTAQIINT 1243
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELE-ILEEEEESIELKQG 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1244 QDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKD--STTLARIEMERLRLNEKFQESQEEIKS 1321
Cdd:pfam02463 445 KLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLeeRSQKESKARSGLKVLLALIKDGVGGRI 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1322 LTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGL 1401
Cdd:pfam02463 525 ISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILN 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1402 SKRLQES------HDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNL 1475
Cdd:pfam02463 605 LAQLDKAtleadeDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEK 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1476 SEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQE 1555
Cdd:pfam02463 685 AESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1556 SQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEhlKEQFETQKLNL 1635
Cdd:pfam02463 765 EKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIK--EEELEELALEL 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1636 ENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKL 1715
Cdd:pfam02463 843 KEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEER 922
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1716 RGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENL 1793
Cdd:pfam02463 923 IKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL 1000
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
624-1185 |
2.31e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 2.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 624 LELKEKMKELattykqmenDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkdllcnlELEGKITDLQKE 703
Cdd:COG1196 216 RELKEELKEL---------EAELLLLKLRELEAELEELEAELEELEAELEELEAELA-----------ELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 704 LNKEVEENEALREEVILLSelkslpSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATT 783
Cdd:COG1196 276 LEELELELEEAQAEEYELL------AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 784 QSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNE 863
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 864 MEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRN 943
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 944 ALESLKqhqetiNTLKSKISEEVSRNLHMEE---------------NTGETKDEFQQKMVGIDKKQDL---------EAK 999
Cdd:COG1196 510 VKAALL------LAGLRGLAGAVAVLIGVEAayeaaleaalaaalqNIVVEDDEVAAAAIEYLKAAKAgratflpldKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1000 NTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQE 1079
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1080 KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLEL 1159
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590
....*....|....*....|....*....|.
gi 2217348663 1160 AQKLN-----ENYEEVKSITKERKVLKELQK 1185
Cdd:COG1196 744 EEELLeeealEELPEPPDLEELERELERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
706-1337 |
7.82e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 7.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 706 KEVEEN----EALREEVIllSELKSLPSEVERLRK--EIQDKSEELhiitsEKDKLFSEVVHKESRVQGLLEEIGKTKDD 779
Cdd:COG1196 182 EATEENlerlEDILGELE--RQLEPLERQAEKAERyrELKEELKEL-----EAELLLLKLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 780 LATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQE 859
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 860 RLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQE 939
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 940 QLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLtaDVKDNEIIEQQRK 1019
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL--AELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1020 IFSLIQEKNELQQMLESVIAEKEQLKTDLKEniemtienQEELRLLGDELKKQQEIV----AQEKNHAIKKEGELSRTCD 1095
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLA--------GAVAVLIGVEAAYEAALEaalaAALQNIVVEDDEVAAAAIE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1096 RLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTL-EHMETERLELAQKLNENYEEVKSIT 1174
Cdd:COG1196 565 YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLgDTLLGRTLVAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1175 KERKVLKE---LQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHT 1251
Cdd:COG1196 645 RLREVTLEgegGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1252 KLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERL-RLN----EKFQESQEEIKSLTKER 1326
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgPVNllaiEEYEELEERYDFLSEQR 804
|
650
....*....|.
gi 2217348663 1327 DNLKTIKEALE 1337
Cdd:COG1196 805 EDLEEARETLE 815
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
512-1240 |
2.07e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 2.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 512 LDYEQLRTEKEEME--LKLKEKNDLD--------EFEALERKTKK------DQENELSSKVELLREKEDQIKKL--QEYI 573
Cdd:TIGR02169 211 ERYQALLKEKREYEgyELLKEKEALErqkeaierQLASLEEELEKlteeisELEKRLEEIEQLLEELNKKIKDLgeEEQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 574 DSQ-KLENIKMDLSySLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLE------------LKEKMKELATTYKQM 640
Cdd:TIGR02169 291 RVKeKIGELEAEIA-SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEreieeerkrrdkLTEEYAELKEELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 641 ENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCN---LELEGKITDLQKELNKEVEENEALREE 717
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSeelADLNAAIAGIEAKINELEEEKEDKALE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 718 VILLS-ELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEE----------IGKTKDDLATTQSN 786
Cdd:TIGR02169 450 IKKQEwKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERvrggraveevLKASIQGVHGTVAQ 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 787 YKSTDQEFQnfKTLHMDFEQKYKMVLEENERMNQEIVNLSKE---------------AQKFDSSLGALKTELSYKTQ--E 849
Cdd:TIGR02169 530 LGSVGERYA--TAIEVAAGNRLNNVVVEDDAVAKEAIELLKRrkagratflplnkmrDERRDLSILSEDGVIGFAVDlvE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 850 LQEKTREVQER-------LNEMEQLKEQLEN-RDSTL--QTVER----------EKTLITEKLQQtLEEVKTLTQEKDDL 909
Cdd:TIGR02169 608 FDPKYEPAFKYvfgdtlvVEDIEAARRLMGKyRMVTLegELFEKsgamtggsraPRGGILFSRSE-PAELQRLRERLEGL 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 910 KQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVG 989
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 990 IDKKQdLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQL---KTDLKENIEMTIENQEELRLLG 1066
Cdd:TIGR02169 767 IEELE-EDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKlnrLTLEKEYLEKEIQELQEQRIDL 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1067 DELKKqqeivaqeknhAIKKEGELSRTcdRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKE 1146
Cdd:TIGR02169 846 KEQIK-----------SIEKEIENLNG--KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1147 LTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATG------LQTKEELKIAHIHLK 1220
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEpvnmlaIQEYEEVLKRLDELK 992
|
810 820
....*....|....*....|
gi 2217348663 1221 EHQETIDELRRSVSEKTAQI 1240
Cdd:TIGR02169 993 EKRAKLEEERKAILERIEEY 1012
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1096-1590 |
2.59e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.30 E-value: 2.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1096 RLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITK 1175
Cdd:PRK02224 214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1176 ER--------------KVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQII 1241
Cdd:PRK02224 294 ERddllaeaglddadaEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1242 NTQ-DLEKSHTK---LQEEIPVLHEEQELLPNVKEVSET-----QETMNEL-ELLTEQSTTKDSTTLARIEMERLRLNEK 1311
Cdd:PRK02224 374 EAReAVEDRREEieeLEEEIEELRERFGDAPVDLGNAEDfleelREERDELrEREAELEATLRTARERVEEAEALLEAGK 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1312 ----------------FQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEhIRETLAKIQESQSKQEQSLNMKEKDNETt 1375
Cdd:PRK02224 454 cpecgqpvegsphvetIEEDRERVEELEAELEDLEEEVEEVEERLERAED-LVEAEDRIERLEERREDLEELIAERRET- 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1376 kIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLkENIKEIVAKHLETEEELk 1455
Cdd:PRK02224 532 -IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEI- 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1456 vahcclkeqeETINELRVNLSEKETEistiqkqleaINDKLQNKIQEIYEKEEQFNIKQISEVQEKvnelkqfkehRKAK 1535
Cdd:PRK02224 609 ----------ERLREKREALAELNDE----------RRERLAEKRERKRELEAEFDEARIEEARED----------KERA 658
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 2217348663 1536 DSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMkrvqEALQIERDQLkENTKE 1590
Cdd:PRK02224 659 EEYLEQVEEKLDELREERDDLQAEIGAVENELEEL----EELRERREAL-ENRVE 708
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
803-1387 |
3.85e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.94 E-value: 3.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 803 DFEQKYKMVLEENERMNQEIVNLskeaQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVE 882
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERL----EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 883 REKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSdihdtvnmnidtQEQLRNALESLKQHQETINTLKSKI 962
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE------------LEEKVKELKELKEKAEEYIKLSEFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 963 SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLtadvkdnEIIEQQRKIFSLIQEKNELQQMLESVIAEKE 1042
Cdd:PRK03918 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK-------KKLKELEKRLEELEERHELYEEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1043 QLKTdlkeniEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKE---------KSQQLQE 1113
Cdd:PRK03918 376 RLKK------RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1114 KQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEhMETERLELAQKLNENYEEVKSITKERKV--LKELQKSFEtER 1191
Cdd:PRK03918 450 RKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE-KVLKKESELIKLKELAEQLKELEEKLKKynLEELEKKAE-EY 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1192 DHLRGYIREIEATGLQTKEELKIAHiHLKEHQETIDELRRSVSEKTAQIINT------QDLEKSHTKLQEEIPVLHEEQE 1265
Cdd:PRK03918 528 EKLKEKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEEELAELLKEleelgfESVEELEERLKELEPFYNEYLE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1266 LLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQE-SQEEIKSLTKERDNLKTIKEALEVKHDQLK 1344
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELE 686
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 2217348663 1345 EHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPK 1387
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREK 729
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
494-1399 |
3.93e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 68.84 E-value: 3.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 494 ENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQENELSSKVELLREKEDQIKKLQEYI 573
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 574 DSQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEA 653
Cdd:pfam02463 225 YLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 654 KKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVER 733
Cdd:pfam02463 305 LERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 734 LRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHmdfEQKYKMVLE 813
Cdd:pfam02463 385 RLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEE---LEKQELKLL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 814 ENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQ 893
Cdd:pfam02463 462 KDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENY 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 894 QTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKqhqeTINTLKSKISEEVSRNLHME 973
Cdd:pfam02463 542 KVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVL----EIDPILNLAQLDKATLEADE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 974 ENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADvkdneiieqqrkifsliqeknelqQMLESVIAEKEQLKTDLKENIE 1053
Cdd:pfam02463 618 DDKRAKVVEGILKDTELTKLKESAKAKESGLRKG------------------------VSLEEGLAEKSEVKASLSELTK 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1054 MTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKIN 1133
Cdd:pfam02463 674 ELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEE 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1134 EIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHL-RGYIREIEATGLQTKEEL 1212
Cdd:pfam02463 754 KSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAeLLEEEQLLIEQEEKIKEE 833
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1213 KIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEipvLHEEQELLPNVKEVSETQETMNELELLTEQSTT 1292
Cdd:pfam02463 834 ELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEE---ELEEQKLKDELESKEEKEKEEKKELEEESQKLN 910
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1293 KDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKtiKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDN 1372
Cdd:pfam02463 911 LLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEK--EKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEE 988
|
890 900
....*....|....*....|....*..
gi 2217348663 1373 ETTKIVSEMEQFKPKDSALLRIEIEML 1399
Cdd:pfam02463 989 RYNKDELEKERLEEEKKKLIRAIIEET 1015
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
635-1341 |
4.04e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.51 E-value: 4.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 635 TTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDG--KVPKDLLCNLELEG-KITDLQKELNKEVEEN 711
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKIleQQIKDLNDKLKKNKdKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 712 EALREEVILL-SELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKST 790
Cdd:TIGR04523 113 KNDKEQKNKLeVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 791 DQEFQNFKTLHMDFEQKykmvLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQ 870
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKK----IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 871 LENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDdlkqlqeslQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQ 950
Cdd:TIGR04523 269 LSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE---------QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 951 HQETINTLKSKI----SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEaKNTQTLTADVKDNEIIEQQR--KIFSLI 1024
Cdd:TIGR04523 340 LNEQISQLKKELtnseSENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE-SQINDLESKIQNQEKLNQQKdeQIKKLQ 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1025 QEKNELQQMLESVIAEKEQLKTDLK-------------ENIEMTIENQEE-LRLLGDELKKQQEIVAQEKNHAIKKEGEL 1090
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKdltnqdsvkeliiKNLDNTRESLETqLKVLSRSINKIKQNLEQKQKELKSKEKEL 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1091 SRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNkELTLEHMETERLELAQKLNENYEEV 1170
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDF-ELKKENLEKEIDEKNKEIEELKQTQ 577
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1171 KSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSH 1250
Cdd:TIGR04523 578 KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEI 657
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1251 TKLQEEIpvLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTlariEMERLRLNEKFQESQEEIKSLTKERDNLK 1330
Cdd:TIGR04523 658 RNKWPEI--IKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIR----IKDLPKLEEKYKEIEKELKKLDEFSKELE 731
|
730
....*....|.
gi 2217348663 1331 TIKEALEVKHD 1341
Cdd:TIGR04523 732 NIIKNFNKKFD 742
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1129-1893 |
4.82e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.01 E-value: 4.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1129 QKKINEIENLKNELKNKELTLEHMETERLELAQKLNE---NYEEVKSITKERKV--LKELQKSFETERDHLRGYIREIEa 1203
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEakkKAEDARKAEEARKAedARKAEEARKAEDAKRVEIARKAE- 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1204 tglqtkEELKIAHIHLKEHQETIDELRRSVSEKTAQiintqDLEKSHTKLQEEIPVLHEEQEllpNVKEVSETQETMNEL 1283
Cdd:PTZ00121 1162 ------DARKAEEARKAEDAKKAEAARKAEEVRKAE-----ELRKAEDARKAEAARKAEEER---KAEEARKAEDAKKAE 1227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1284 ELLTEQSTTKDSTTLARIEMERLRLN-EKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIREtlAKIQESQSKQE 1362
Cdd:PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEERNNEEiRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE--AKKAEEKKKAD 1305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1363 QSLNMKEKDNETTKIVSEMEQFKPKDSALlrieiemlglSKRLQEshdemksvAKEKDDLQRLQEvlQSESDQLKENIKE 1442
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAA----------KKKAEE--------AKKAAEAAKAEA--EAAADEAEAAEEK 1365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1443 IVAKHLETEEELKVAHCCLKEQEETinelrvnlsEKETEISTIQKQLEAINDKLQNKIQEIYEKEEqfnIKQISEVQEKV 1522
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEK---------KKADEAKKKAEEDKKKADELKKAAAAKKKADE---AKKKAEEKKKA 1433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1523 NEL-KQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLK---ENTKEIVAKMKES 1598
Cdd:PTZ00121 1434 DEAkKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKkadEAKKAAEAKKKAD 1513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1599 QEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNlENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERD 1678
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD-ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1679 QLKENLRETITRDLKIQEELRIAhmhlKEQQETIDKLRGIVSEKTdKLSNMQKDLENSNAKLQEKIQELKANEHQLITLK 1758
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKA----EEAKIKAEELKKAEEEKK-KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1759 KDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIEnlnlAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETK 1838
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE----AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348663 1839 ARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISD-IQKDLDKSKDELQKK 1893
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEeLDEEDEKRRMEVDKK 1799
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1631-1911 |
5.73e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.56 E-value: 5.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1631 QKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLrETITRDLKiQEELRIAHMHLKEQ-- 1708
Cdd:TIGR02169 214 QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRL-EEIEQLLE-ELNKKIKDLGEEEQlr 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1709 -QETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVsemEQLKKQIKDQSLTLSK 1787
Cdd:TIGR02169 292 vKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR---DKLTEEYAELKEELED 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1788 LEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLRE 1867
Cdd:TIGR02169 369 LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1868 KISEKT--------------IQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDGQ 1911
Cdd:TIGR02169 449 EIKKQEwkleqlaadlskyeQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1087-1682 |
7.29e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 7.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1087 EGELSRTCDRLAEVE----------EKLK---------------------------------EKSQQLQEKQQQLLNVQE 1123
Cdd:COG1196 178 ERKLEATEENLERLEdilgelerqlEPLErqaekaeryrelkeelkeleaellllklreleaELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1124 EMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEA 1203
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1204 TGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIpvLHEEQELLPNVKEVSETQETMNEL 1283
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1284 ELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQ 1363
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1364 SLNMKEKDNETTKIVSEMEQfKPKDSALLRIEIEMLG------------LSKRLQESHDEMKSVAKEKDDL---QRLQEV 1428
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALL-LAGLRGLAGAVAVLIGveaayeaaleaaLAAALQNIVVEDDEVAAAAIEYlkaAKAGRA 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1429 LQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEE 1508
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1509 QFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEiqimiKEKEEMKRVQEALQIERDQLKENT 1588
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE-----ERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1589 KEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLtqilhenLEEMRSVTKERDDLRS 1668
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVNLLA-------IEEYEELEERYDFLSE 802
|
650
....*....|....
gi 2217348663 1669 VEETLKVERDQLKE 1682
Cdd:COG1196 803 QREDLEEARETLEE 816
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
625-1807 |
1.02e-10 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 67.77 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 625 ELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKltsLIDGKVPKDLLcNLELEGKITDLQK-- 702
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLE---IDDEIIYINKL-KLELKEKIKNISDkn 616
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 703 -------ELNKEVEENEALREEVILLSELKsLPSEVERLRKEIQD-KSEELHIITSEKDKLFSEVvhkESRVQGLLEEIG 774
Cdd:TIGR01612 617 eyikkaiDLKKIIENNNAYIDELAKISPYQ-VPEHLKNKDKIYSTiKSELSKIYEDDIDALYNEL---SSIVKENAIDNT 692
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 775 KTKDDLATTQSNYKSTDQEFQNFKTlhmdfeQKYKMVLEENERMNQEIVNLSKEAQKFdsSLGALKTELSYKTQELQEKT 854
Cdd:TIGR01612 693 EDKAKLDDLKSKIDKEYDKIQNMET------ATVELHLSNIENKKNELLDIIVEIKKH--IHGEINKDLNKILEDFKNKE 764
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 855 REVQERLNEMEQLKEQLE-------------NRDSTLQTVEREKTliTEKLQQTLEEVKTLTQEKDDLKQLQESLQIERD 921
Cdd:TIGR01612 765 KELSNKINDYAKEKDELNkykskiseiknhyNDQINIDNIKDEDA--KQNYDKSKEYIKTISIKEDEIFKIINEMKFMKD 842
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 922 QLKSDIHDTVNMNIDTQEQLRNALESLKqhqETINTLKSKISEEVSRNlhMEENTGETKDEFQQKMVGIDKkqdlEAKNT 1001
Cdd:TIGR01612 843 DFLNKVDKFINFENNCKEKIDSEHEQFA---ELTNKIKAEISDDKLND--YEKKFNDSKSLINEINKSIEE----EYQNI 913
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1002 QTLTadvKDNEIIEQQRKIFSLIQEKNELQQMLESVIaeKEQLKTDLKEN-IEMTIENQEELRLLGDELKKQQEIVAQEK 1080
Cdd:TIGR01612 914 NTLK---KVDEYIKICENTKESIEKFHNKQNILKEIL--NKNIDTIKESNlIEKSYKDKFDNTLIDKINELDKAFKDASL 988
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1081 NHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQ--EKQQQLLNVQEEMSEMQKKINEIE--------NLKNELKNK-ELTL 1149
Cdd:TIGR01612 989 NDYEAKNNELIKYFNDLKANLGKNKENMLYHQfdEKEKATNDIEQKIEDANKNIPNIEiaihtsiyNIIDEIEKEiGKNI 1068
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1150 EHMETERLELAQKLNENYEEVKSITKE---RKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL----KIAHIHLKEH 1222
Cdd:TIGR01612 1069 ELLNKEILEEAEINITNFNEIKEKLKHynfDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALeeikKKSENYIDEI 1148
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1223 QETIDELRRsVSEKTAQIINTQDLEKSH----TKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLT-EQSTTKDSTT 1297
Cdd:TIGR01612 1149 KAQINDLED-VADKAISNDDPEEIEKKIenivTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINlSYGKNLGKLF 1227
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1298 LARIEMER------LRLNEKFQESQEEIKSLTKERDNLKTIK-------EALEVKHDQLKEH-------------IRETL 1351
Cdd:TIGR01612 1228 LEKIDEEKkksehmIKAMEAYIEDLDEIKEKSPEIENEMGIEmdikaemETFNISHDDDKDHhiiskkhdenisdIREKS 1307
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1352 AKIQESQSKQEQSLNMKEKDN----ETTKIVSEMEQFKPKDSALLRIeiemLGLSKrLQESHDEMKSVAKEKDDLQRLQE 1427
Cdd:TIGR01612 1308 LKIIEDFSEESDINDIKKELQknllDAQKHNSDINLYLNEIANIYNI----LKLNK-IKKIIDEVKEYTKEIEENNKNIK 1382
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1428 VLQSESDQLKENIKE-IVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKL---------- 1496
Cdd:TIGR01612 1383 DELDKSEKLIKKIKDdINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVlllfkniema 1462
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1497 QNKIQEIYEKEEQ-------FNIKQISEVQEKVNELKQ---------------FKEHRKAKDSALQSIESkmLELTNRLQ 1554
Cdd:TIGR01612 1463 DNKSQHILKIKKDnatndhdFNINELKEHIDKSKGCKDeadknakaieknkelFEQYKKDVTELLNKYSA--LAIKNKFA 1540
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1555 ESQEEIQIMIKEKEEMKRV----------------QEALQIERDQLKEN--TKEIVAKMKESQEKEYQFLKMTAV-NETQ 1615
Cdd:TIGR01612 1541 KTKKDSEIIIKEIKDAHKKfileaekseqkikeikKEKFRIEDDAAKNDksNKAAIDIQLSLENFENKFLKISDIkKKIN 1620
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1616 EKMCEIEHLKEQFETQKLNLENIE-TENIRLTQILHENLEEMRSVTK-------ERDDLRSVEETLKVERDQLKENLRET 1687
Cdd:TIGR01612 1621 DCLKETESIEKKISSFSIDSQDTElKENGDNLNSLQEFLESLKDQKKniedkkkELDELDSEIEKIEIDVDQHKKNYEIG 1700
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1688 ITRDLKiqeELRIAHmhlKEQQETIDKLRGIVSEKTDKLSNMQkDLE--NSNAKLQEKIQELKANEHQLITLKKDVNETQ 1765
Cdd:TIGR01612 1701 IIEKIK---EIAIAN---KEEIESIKELIEPTIENLISSFNTN-DLEgiDPNEKLEEYNTEIGDIYEEFIELYNIIAGCL 1773
|
1290 1300 1310 1320
....*....|....*....|....*....|....*....|..
gi 2217348663 1766 KKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMK 1807
Cdd:TIGR01612 1774 ETVSKEPITYDEIKNTRINAQNEFLKIIEIEKKSKSYLDDIE 1815
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1624-1912 |
1.09e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1624 LKEQFETQKLNLENIETENIRLTQILHEnlEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHM 1703
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELE--AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1704 HLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKkvsEMEQLKKQIKDQSL 1783
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA---ELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1784 TLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVD 1863
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2217348663 1864 KLREKISEKTIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDGQQ 1912
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
701-1634 |
1.37e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 67.38 E-value: 1.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 701 QKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKdKLFSEVVHKESRVQgllEEIGKTKDDL 780
Cdd:TIGR00606 158 QEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMEL-KYLKQYKEKACEIR---DQITSKEAQL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 781 ATTQSNYKSTDQEFQNFKTLhmdfeqkykmvLEENERMNQEIVNLSKEAQKFDSSlgalKTELSYKTQELQEKTREVQER 860
Cdd:TIGR00606 234 ESSREIVKSYENELDPLKNR-----------LKEIEHNLSKIMKLDNEIKALKSR----KKQMEKDNSELELKMEKVFQG 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 861 LNEmeQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDL--KQLQESLQIERDQLKSDIHDTVNMNIDTQ 938
Cdd:TIGR00606 299 TDE--QLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELlvEQGRLQLQADRHQEHIRARDSLIQSLATR 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 939 EQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLtadvkDNEIIEQQR 1018
Cdd:TIGR00606 377 LELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI-----ELKKEILEK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1019 KIFSLIQEKNELQQMLESV--IAEKEQLKTDLKENIEMTIENQEELRLLGDE--LKKQQEIVAQEKNHAIKKEGELSRTC 1094
Cdd:TIGR00606 452 KQEELKFVIKELQQLEGSSdrILELDQELRKAERELSKAEKNSLTETLKKEVksLQNEKADLDRKLRKLDQEMEQLNHHT 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1095 DRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSIT 1174
Cdd:TIGR00606 532 TTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHIN 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1175 KERKVLKELQKSFETerdhlrgyiREIEATGLQTkEELKIAhiHLKEHQETIDELRRSVSEKTAqiINTQDLEKSHTKLQ 1254
Cdd:TIGR00606 612 NELESKEEQLSSYED---------KLFDVCGSQD-EESDLE--RLKEEIEKSSKQRAMLAGATA--VYSQFITQLTDENQ 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1255 EEIPVLHEEQELLPNVKEVSETQETM--------NELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKER 1326
Cdd:TIGR00606 678 SCCPVCQRVFQTEAELQEFISDLQSKlrlapdklKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVN 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1327 DNLKTIKEALEVKHDQLKE-HIRETLAKIQESQSKQEQSLNMKEKDNEtTKIVSEMEQFKPKDSALLRIEiemlgLSKRL 1405
Cdd:TIGR00606 758 RDIQRLKNDIEEQETLLGTiMPEEESAKVCLTDVTIMERFQMELKDVE-RKIAQQAAKLQGSDLDRTVQQ-----VNQEK 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1406 QESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTI 1485
Cdd:TIGR00606 832 QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQD 911
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1486 QKQLEAINDKLQNKIQEIYEKEEQFNIKQIsEVQEKVNELKQFKEHRK--------AKDSALQSIESKMLELTNRLQESQ 1557
Cdd:TIGR00606 912 SPLETFLEKDQQEKEELISSKETSNKKAQD-KVNDIKEKVKNIHGYMKdienkiqdGKDDYLKQKETELNTVNAQLEECE 990
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348663 1558 EEIQIMIKEKEEMKRVQEALQIERDQLKEN--TKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLN 1634
Cdd:TIGR00606 991 KHQEKINEDMRLMRQDIDTQKIQERWLQDNltLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRN 1069
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
479-1191 |
2.55e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 2.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 479 LSEIEWNPATKLLNQENIESELNSLRADYDNLVLDYEQLRTEKEEmelKLKEKNDLDEFEALERKTKKDQENELSSKVEL 558
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE---ERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 559 LREKEDQIKKLQEYID--SQKLENIKMDLSyslESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATT 636
Cdd:TIGR02169 380 FAETRDELKDYREKLEklKREINELKRELD---RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 637 YKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKL--------TSLIDGKVPKDLL--CNLELEGKITDLQK---- 702
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAeaqaraseERVRGGRAVEEVLkaSIQGVHGTVAQLGSvger 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 703 -----------ELNKEVEENEALREEVI-LLSELKSLPSEVERLRKeIQDKSEELHIITS-----------EKDKLFSEV 759
Cdd:TIGR02169 537 yataievaagnRLNNVVVEDDAVAKEAIeLLKRRKAGRATFLPLNK-MRDERRDLSILSEdgvigfavdlvEFDPKYEPA 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 760 VHKESRVQGLLEEIGKTKDDLAttqsnykstdqefqNFKTLHMD---FEQKYKMVLEENERMNQEIVNLS--KEAQKFDS 834
Cdd:TIGR02169 616 FKYVFGDTLVVEDIEAARRLMG--------------KYRMVTLEgelFEKSGAMTGGSRAPRGGILFSRSepAELQRLRE 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 835 SLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQE 914
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 915 SLQIERDQLKSDIHdtvnmnidtqeQLRNALESLKQHQ-----ETINTLKSKISEEVSRN-LHMEENTGETKDEFQQKMV 988
Cdd:TIGR02169 762 ELEARIEELEEDLH-----------KLEEALNDLEARLshsriPEIQAELSKLEEEVSRIeARLREIEQKLNRLTLEKEY 830
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 989 GIDKKQDLEAKNTQTltadvkDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDE 1068
Cdd:TIGR02169 831 LEKEIQELQEQRIDL------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1069 LKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLnVQEEMSEMQKKINEIENLKNelknkeLT 1148
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED-VQAELQRVEEEIRALEPVNM------LA 977
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 2217348663 1149 LEHMEterlELAQKLNENYEEVKSITKERKVLKELQKSFETER 1191
Cdd:TIGR02169 978 IQEYE----EVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1449-1777 |
3.54e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 3.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1449 ETEEELKVAhcclkeqEEtiNELRVN--LSEKETEISTIQKQLE------AINDKLQNKIQEIYEKEEQFNIKQISEVQE 1520
Cdd:COG1196 176 EAERKLEAT-------EE--NLERLEdiLGELERQLEPLERQAEkaeryrELKEELKELEAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1521 KVNELKqfkEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE----KEEMKRVQEALQIERDQLKENTKEIVAKMK 1596
Cdd:COG1196 247 ELEELE---AELEELEAELAELEAELEELRLELEELELELEEAQAEeyelLAELARLEQDIARLEERRRELEERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1597 ESQEKEYQFLKMTAVNETQEKmcEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE 1676
Cdd:COG1196 324 ELAELEEELEELEEELEELEE--ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1677 RDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLIT 1756
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340
....*....|....*....|.
gi 2217348663 1757 LKKDVNETQKKVSEMEQLKKQ 1777
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEAD 502
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1416-1893 |
3.92e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.45 E-value: 3.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1416 AKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVnlseketeistiqkqLEAINDK 1495
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET---------------LEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1496 LQNKIQEIYEKEEQFNiKQISEVQEKVNELKQFKEHRKAK----DSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMK 1571
Cdd:PRK02224 263 LRETIAETEREREELA-EEVRDLRERLEELEEERDDLLAEagldDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1572 RVQEALQIERDQLKENTKEIVAKMKESqEKEYQflkmTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQiLHE 1651
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAEL-ESELE----EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED-FLE 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1652 NLEEMRSVTKERddLRSVEETLKVERDQLKENLR--------------------ETITRDLKIQEELRIAHMHLKEQQET 1711
Cdd:PRK02224 416 ELREERDELRER--EAELEATLRTARERVEEAEAlleagkcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEVEE 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1712 ----IDKLRGIVsEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNE-----------TQKKVSEMEQLKK 1776
Cdd:PRK02224 494 veerLERAEDLV-EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleaeaeekreaAAEAEEEAEEARE 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1777 QIK--DQSLTLSKLEIENLNlaqKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARM- 1853
Cdd:PRK02224 573 EVAelNSKLAELKERIESLE---RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIe 649
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 2217348663 1854 LSKEHKETVDKLREKISEKTiqisdiqKDLDKSKDELQKK 1893
Cdd:PRK02224 650 EAREDKERAEEYLEQVEEKL-------DELREERDDLQAE 682
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
938-1603 |
6.69e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.99 E-value: 6.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 938 QEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQ 1017
Cdd:TIGR00618 166 KELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1018 RKIFSLIQEKNELQQMLESVIAEKEQLKTDLKEniemtIENQEELRllgdELKKQQEIVAQEKNHAIKKEGELSRTCDRL 1097
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAV-----LEETQERI----NRARKAAPLAAHIKAVTQIEQQAQRIHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1098 AEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQK-----KINEIENLKNELKNKELTLEHMETERL-ELAQKLNENYEEVK 1171
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsqeIHIRDAHEVATSIREISCQQHTLTQHIhTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1172 SITKERKVLKELQKSFETE---RDHLRGYIREIEATGLQTKEELKIAHIHL-KEHQETI------DELRRSVSEKTAQII 1241
Cdd:TIGR00618 397 SLCKELDILQREQATIDTRtsaFRDLQGQLAHAKKQQELQQRYAELCAAAItCTAQCEKlekihlQESAQSLKEREQQLQ 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1242 NTQDLEKSHTK----------LQEEIPVLHEEQELLPNVKEV-----------------------SETQETMNELELLTE 1288
Cdd:TIGR00618 477 TKEQIHLQETRkkavvlarllELQEEPCPLCGSCIHPNPARQdidnpgpltrrmqrgeqtyaqleTSEEDVYHQLTSERK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1289 QsTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMK 1368
Cdd:TIGR00618 557 Q-RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1369 EKDNETTKIVSEMEQF-------KPKDSALLRIEIEMLGLSKR---LQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKE 1438
Cdd:TIGR00618 636 QCSQELALKLTALHALqltltqeRVREHALSIRVLPKELLASRqlaLQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1439 NIKEIVakhlETEEELKVAHCCLKEQEETINELRVNLSE------KETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNI 1512
Cdd:TIGR00618 716 YDREFN----EIENASSSLGSDLAAREDALNQSLKELMHqartvlKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFN 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1513 KQISEVQEKVNELKQfkEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIV 1592
Cdd:TIGR00618 792 RLREEDTHLLKTLEA--EIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
730
....*....|.
gi 2217348663 1593 AKMKESQEKEY 1603
Cdd:TIGR00618 870 KIIQLSDKLNG 880
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1662-1940 |
7.32e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 7.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1662 ERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLEnsnaKLQ 1741
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA----RLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1742 EKIQELKANEHQLITlkkdvnETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEE 1821
Cdd:COG1196 309 ERRRELEERLEELEE------ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1822 TLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQNHQVK 1901
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2217348663 1902 P---EKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYE 1940
Cdd:COG1196 463 EllaELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1219-1954 |
7.58e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 7.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1219 LKEHQETIDELRRSVSEKTAQIintqdlekshTKLQEEIPVLHEEQELLPNVKEVsETQETMNELELLTEQSTTKDSTtL 1298
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQL----------ERLRREREKAERYQALLKEKREY-EGYELLKEKEALERQKEAIERQ-L 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1299 ARIEMERLRLNEKFQESQEEIKSLTKERDNL-KTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQS-LNMKEKDNETTK 1376
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKeRELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1377 IVSEMEqfkpkdsallRIEIEMLGLSKRLQEshdemksVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKV 1456
Cdd:TIGR02169 327 LEAEID----------KLLAEIEELEREIEE-------ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1457 AHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQiSEVQEKVNELKQFKEHRKAKD 1536
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA-LEIKKQEWKLEQLAADLSKYE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1537 SALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKE--SQEKEYQF-LKMTAVNE 1613
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQlgSVGERYATaIEVAAGNR 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1614 TQEKMCEIEhlkeqfETQKLNLENIETENI-RLTQIlheNLEEMRSvtKERDDLRSVEETLK------VERDQLKENLRE 1686
Cdd:TIGR02169 549 LNNVVVEDD------AVAKEAIELLKRRKAgRATFL---PLNKMRD--ERRDLSILSEDGVIgfavdlVEFDPKYEPAFK 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1687 TITRDLKIQEELRIAHMHLKEQQetIDKLRGIVSEKTDKL---SNMQKDLENSNAKLQEKIQELKaneHQLITLKKDVNE 1763
Cdd:TIGR02169 618 YVFGDTLVVEDIEAARRLMGKYR--MVTLEGELFEKSGAMtggSRAPRGGILFSRSEPAELQRLR---ERLEGLKRELSS 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1764 TQKKVSEMEQLKKQikdqsltlskleienlnLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLE 1843
Cdd:TIGR02169 693 LQSELRRIENRLDE-----------------LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1844 IQQELKTARMLSKEHKETVDKLREKI-----SEKTIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDGQQHLTESL 1918
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALndleaRLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835
|
730 740 750
....*....|....*....|....*....|....*.
gi 2217348663 1919 REKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIE 1954
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE 871
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1126-1873 |
8.31e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.27 E-value: 8.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1126 SEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIeatg 1205
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKI---- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1206 lqtKEELKIAHIHLKEHQETIDELRRSVSEKTAQIIntqDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELEL 1285
Cdd:TIGR04523 109 ---NSEIKNDKEQKNKLEVELNKLEKQKKENKKNID---KFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1286 LTEQSTTKDsttlarIEMERLRLNEKF---QESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQE 1362
Cdd:TIGR04523 183 LNIQKNIDK------IKNKLLKLELLLsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1363 QSLNMKEKDNEttkivsemeQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDdlQRLQEVLQSESDQLKENIKE 1442
Cdd:TIGR04523 257 QLKDEQNKIKK---------QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE--QDWNKELKSELKNQEKKLEE 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1443 IVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQiSEVQEKV 1522
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE-SKIQNQE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1523 NELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKE 1602
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1603 YQFLKMTAVNETQEKMCEIEHLKEQFETQKLNlENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKverdqlKE 1682
Cdd:TIGR04523 485 EQKQKELKSKEKELKKLNEEKKELEEKVKDLT-KKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK------KE 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1683 NLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVN 1762
Cdd:TIGR04523 558 NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIK 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1763 ETQKKVSE-MEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKErDNLRRVEETLKLERDQLKESLQEtkaRD 1841
Cdd:TIGR04523 638 SKKNKLKQeVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKE-LSLHYKKYITRMIRIKDLPKLEE---KY 713
|
730 740 750
....*....|....*....|....*....|..
gi 2217348663 1842 LEIQQELKTARMLSKEHKETVDKLREKISEKT 1873
Cdd:TIGR04523 714 KEIEKELKKLDEFSKELENIIKNFNKKFDDAF 745
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
512-870 |
1.09e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 512 LDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQENELSSKVE----LLREKEDQIKKLQEYID--SQKLENIKMDL 585
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdasrKIGEIEKEIEQLEQEEEklKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 586 SYSLESIEDPKQMKQTLfDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMEnDIQLYQSQLEAKKKmqvDLEKEL 665
Cdd:TIGR02169 747 SSLEQEIENVKSELKEL-EARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS-KLEEEVSRIEARLR---EIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 666 QSAFNEITKLTSLIDGKVPKdllcNLELEGKITDLQKE---LNKEVEENEALREEviLLSELKSLPSEVERLRKEIQDKS 742
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQ----RIDLKEQIKSIEKEienLNGKKEELEEELEE--LEAALRDLESRLGDLKKERDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 743 EELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNfktlHMDFEQKYKMVLEENERMNQ-E 821
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE----ELSLEDVQAELQRVEEEIRAlE 971
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2217348663 822 IVNLsKEAQKFDSSLGALKtELSYKTQELQEKTREVQERLNEMEQLKEQ 870
Cdd:TIGR02169 972 PVNM-LAIQEYEEVLKRLD-ELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
896-2170 |
1.40e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 64.30 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 896 LEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNI--DTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHME 973
Cdd:TIGR01612 499 LMRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDQNIKAKLykEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLE 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 974 EntgETKDEFQQKMVGIDK-----KQDLEAKNTQTLTADvkDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDL 1048
Cdd:TIGR01612 579 K---EIKDLFDKYLEIDDEiiyinKLKLELKEKIKNISD--KNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKN 653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1049 KENIEMTIENQEELRLLGDELKKQQEIvaqeknHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEM 1128
Cdd:TIGR01612 654 KDKIYSTIKSELSKIYEDDIDALYNEL------SSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNI 727
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1129 QKKINEIENLKNELK-------NKEL--TLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIR 1199
Cdd:TIGR01612 728 ENKKNELLDIIVEIKkhihgeiNKDLnkILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDE 807
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1200 EIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHtklQEEIPVLHEEQELLPNVKEVSETQET 1279
Cdd:TIGR01612 808 DAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNC---KEKIDSEHEQFAELTNKIKAEISDDK 884
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1280 MNELELLTEQSTTKDSTTLARIEMERLRLNeKFQESQEEIKSLTKERDNLKTIKEalevKHDQLKEHIRETLAKIQESQS 1359
Cdd:TIGR01612 885 LNDYEKKFNDSKSLINEINKSIEEEYQNIN-TLKKVDEYIKICENTKESIEKFHN----KQNILKEILNKNIDTIKESNL 959
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1360 KQEQSLN-----MKEKDNETTKIVSE--MEQFKPKDSALLRIEIEM---LGLSK------RLQESHDEMKSVAKEKDDLQ 1423
Cdd:TIGR01612 960 IEKSYKDkfdntLIDKINELDKAFKDasLNDYEAKNNELIKYFNDLkanLGKNKenmlyhQFDEKEKATNDIEQKIEDAN 1039
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1424 R----LQEVLQSESDQLKENIKEIVAKHLET--EEELKVAHCCLKEQEETINELRV-NLSE--KETEIstiqKQLEAINd 1494
Cdd:TIGR01612 1040 KnipnIEIAIHTSIYNIIDEIEKEIGKNIELlnKEILEEAEINITNFNEIKEKLKHyNFDDfgKEENI----KYADEIN- 1114
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1495 KLQNKIQEIYEKEEQfNIKQISEVQEK----VNELK-QFKEHRKAKDSALQSIESKMLEltnrlqESQEEIQIMIKEK-- 1567
Cdd:TIGR01612 1115 KIKDDIKNLDQKIDH-HIKALEEIKKKsenyIDEIKaQINDLEDVADKAISNDDPEEIE------KKIENIVTKIDKKkn 1187
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1568 --EEMKRV-QEALQIERDQlkeNTKEIVAKMKESQEKEYQFLKMTAVNETQEKMceiEHLKEQFETQKLNLENIEtenir 1644
Cdd:TIGR01612 1188 iyDEIKKLlNEIAEIEKDK---TSLEEVKGINLSYGKNLGKLFLEKIDEEKKKS---EHMIKAMEAYIEDLDEIK----- 1256
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1645 ltqilhENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEeLRIAHMHLKEQQETIDKLRGIVSEKTD 1724
Cdd:TIGR01612 1257 ------EKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISD-IREKSLKIIEDFSEESDINDIKKELQK 1329
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1725 KLSNMQKDLENSNAKLQEkIQELkANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQsltLSKLEienlNLAQKLHEN-- 1802
Cdd:TIGR01612 1330 NLLDAQKHNSDINLYLNE-IANI-YNILKLNKIKKIIDEVKEYTKEIEENNKNIKDE---LDKSE----KLIKKIKDDin 1400
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1803 LEEMKSVMKERDNLRRVEETLKlerdqlkeSLQETKARDLEIQQELKTARMLSKEHKETVDKLREKI---SEKTIQISDI 1879
Cdd:TIGR01612 1401 LEECKSKIESTLDDKDIDECIK--------KIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIemaDNKSQHILKI 1472
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1880 QKDLDKSKDELQKKDRQNHQVKpekrllSDGQQHLTESLREKCSRIKELLKRYSEmdDHYECLNRLS-LDLEKEIEFQKE 1958
Cdd:TIGR01612 1473 KKDNATNDHDFNINELKEHIDK------SKGCKDEADKNAKAIEKNKELFEQYKK--DVTELLNKYSaLAIKNKFAKTKK 1544
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1959 LSMRVkanlslpylqtkhIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEE--QHESINKFEMDFIDEVEKQKELLIK 2036
Cdd:TIGR01612 1545 DSEII-------------IKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDaaKNDKSNKAAIDIQLSLENFENKFLK 1611
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2037 IQHLQQdcdvpsrelrdlKLNQNMDlHIEEILKDFSESEFPSIKTEFQQVLSNRKEMTQFLEEWLNTRFDIEKLKNGIQK 2116
Cdd:TIGR01612 1612 ISDIKK------------KINDCLK-ETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDE 1678
|
1290 1300 1310 1320 1330
....*....|....*....|....*....|....*....|....*....|....
gi 2217348663 2117 ENDRICQVNNFFNNRiiaIMNESTEFEERSATISKEWEQDLKSLKEKNEKLFKN 2170
Cdd:TIGR01612 1679 LDSEIEKIEIDVDQH---KKNYEIGIIEKIKEIAIANKEEIESIKELIEPTIEN 1729
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
848-1699 |
1.63e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.60 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 848 QELQEKTREVQERLNEMEQL--KEQLENRDSTLQtverektlITEKLQQTLEEVKTLTQEKDDLKQLQESLqieRDQLKS 925
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELheKQKFYLRQSVID--------LQTKLQEMQMERDAMADIRRRESQSQEDL---RNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 926 DIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGetkdefqQKMVGIDKKQDLEAKNTQTLT 1005
Cdd:pfam15921 150 TVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASG-------KKIYEHDSMSTMHFRSLGSAI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1006 ADV---KDNEIIEQQRKIFSL--------IQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQE 1074
Cdd:pfam15921 223 SKIlreLDTEISYLKGRIFPVedqlealkSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1075 IVA-QEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQ--------LLNVQEEMSEMQKKINEIENLKNEL--- 1142
Cdd:pfam15921 303 IIQeQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEElekqlvlaNSELTEARTERDQFSQESGNLDDQLqkl 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1143 ------KNKELTLEHMETERL------------ELAQKLNENYEEVKSITKERKVLK-ELQKSFETERDHLRGYIREIE- 1202
Cdd:pfam15921 383 ladlhkREKELSLEKEQNKRLwdrdtgnsitidHLRRELDDRNMEVQRLEALLKAMKsECQGQMERQMAAIQGKNESLEk 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1203 -----ATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQELlpnvkEVSETQ 1277
Cdd:pfam15921 463 vssltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASL---QEKERAIEATNAEITKLRSRVDL-----KLQELQ 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1278 ETMNELELLTEQSTTKDSTTLARIEMERLrlnekFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQES 1357
Cdd:pfam15921 535 HLKNEGDHLRNVQTECEALKLQMAEKDKV-----IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEF 609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1358 QSKqeqslnmkeKDNETTKIvsemeqfKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLK 1437
Cdd:pfam15921 610 KIL---------KDKKDAKI-------RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLS 673
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1438 ENIkEIVAKHLETEEElkvahcclkEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIK--QI 1515
Cdd:pfam15921 674 EDY-EVLKRNFRNKSE---------EMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKrgQI 743
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1516 SEVQEKVNELKQFKEHRKAKDSALQSIESKMleltnrlqesQEEIQIMIKEKEEMKRVQEALQIERDQLKENtkeiVAKM 1595
Cdd:pfam15921 744 DALQSKIQFLEEAMTNANKEKHFLKEEKNKL----------SQELSTVATEKNKMAGELEVLRSQERRLKEK----VANM 809
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1596 KESQEK-EYQFLKMTAVNETQEKmcEIEHLKEQfetQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLK 1674
Cdd:pfam15921 810 EVALDKaSLQFAECQDIIQRQEQ--ESVRLKLQ---HTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQSTAS 884
|
890 900
....*....|....*....|....*...
gi 2217348663 1675 -VERDQLKEN-LRETITRDLK-IQEELR 1699
Cdd:pfam15921 885 fLSHHSRKTNaLKEDPTRDLKqLLQELR 912
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1399-1602 |
2.03e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.09 E-value: 2.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1399 LGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEK 1478
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1479 ETEISTIQKQLEAINDKLQNKIQEIYEKEEQ------FNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNR 1552
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2217348663 1553 LQESQEEIQIMIKEKEEMKRVQEALQIERDQ-LKENTKEIVAKMKESQEKE 1602
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKlLARLEKELAELAAELAELQ 219
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1038-2305 |
2.14e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 63.53 E-value: 2.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1038 IAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHaikKEGELSRTCDRLAEVEEKLKEKSQQLQEKqqq 1117
Cdd:TIGR01612 471 IFEEEWGSYDIKKDIDENSKQDNTVKLILMRMKDFKDIIDFMELY---KPDEVPSKNIIGFDIDQNIKAKLYKEIEA--- 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1118 llNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGY 1197
Cdd:TIGR01612 545 --GLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNEYIKKA 622
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1198 I---REIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINtQDLEKSHTKLQ-----------EEIPVLHEE 1263
Cdd:TIGR01612 623 IdlkKIIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSELSKIYE-DDIDALYNELSsivkenaidntEDKAKLDDL 701
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1264 QELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERL----------RLNEKFQESQEEIKS----LTKERDNL 1329
Cdd:TIGR01612 702 KSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHihgeinkdlnKILEDFKNKEKELSNkindYAKEKDEL 781
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1330 KTIKEAL-EVK---HDQLK-EHIRETLAKIQESQSKqEQSLNMKEKDNETTKIVSEMEQFKpkDSALLRIEIEMlglskR 1404
Cdd:TIGR01612 782 NKYKSKIsEIKnhyNDQINiDNIKDEDAKQNYDKSK-EYIKTISIKEDEIFKIINEMKFMK--DDFLNKVDKFI-----N 853
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1405 LQESHDEmkSVAKEKDDLQRLQEVLQSESDQLKENIKEivAKHLETEEELKVAHCCLKEQEETINELR-----VNLSEKE 1479
Cdd:TIGR01612 854 FENNCKE--KIDSEHEQFAELTNKIKAEISDDKLNDYE--KKFNDSKSLINEINKSIEEEYQNINTLKkvdeyIKICENT 929
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1480 TE-ISTIQKQLEAINDKLQNKIQEIYEK---EEQFNIKQISEVQEKVNELKqfkehRKAKDSALQSIESKMLELTNRLQE 1555
Cdd:TIGR01612 930 KEsIEKFHNKQNILKEILNKNIDTIKESnliEKSYKDKFDNTLIDKINELD-----KAFKDASLNDYEAKNNELIKYFND 1004
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1556 SQEEIQimiKEKEEMkrvqeaLQIERDQLKENTKEIVAKMkESQEKEYQFLKMTAVNETQEKMCEIEHLKEQfetqklNL 1635
Cdd:TIGR01612 1005 LKANLG---KNKENM------LYHQFDEKEKATNDIEQKI-EDANKNIPNIEIAIHTSIYNIIDEIEKEIGK------NI 1068
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1636 ENIETENIRLTQILHENLEEMRSVTK--------ERDDLRSVEETLKVERDqlKENLRETITRDLKIQEELR-IAHMHLK 1706
Cdd:TIGR01612 1069 ELLNKEILEEAEINITNFNEIKEKLKhynfddfgKEENIKYADEINKIKDD--IKNLDQKIDHHIKALEEIKkKSENYID 1146
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1707 EQQETIDKLRGiVSEKTDKLSNMqKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLS 1786
Cdd:TIGR01612 1147 EIKAQINDLED-VADKAISNDDP-EEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLG 1224
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1787 KLEIENLNLAQKLHEN-LEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEiQQELKTARMLSKEHKETVDKL 1865
Cdd:TIGR01612 1225 KLFLEKIDEEKKKSEHmIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNIS-HDDDKDHHIISKKHDENISDI 1303
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1866 REKiSEKTIQISDIQKDLDKSKDELQKK--DRQNHQvkpekrllSDGQQHLTESLR----EKCSRIKELLKRYSEMDDHY 1939
Cdd:TIGR01612 1304 REK-SLKIIEDFSEESDINDIKKELQKNllDAQKHN--------SDINLYLNEIANiyniLKLNKIKKIIDEVKEYTKEI 1374
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1940 ECLNRlslDLEKEIEFQKELSMRVKANLSLPYLQTKhIEKLFTAN------QRCSMEFHRIMKKLKYVLSYVTKIKEEQH 2013
Cdd:TIGR01612 1375 EENNK---NIKDELDKSEKLIKKIKDDINLEECKSK-IESTLDDKdideciKKIKELKNHILSEESNIDTYFKNADENNE 1450
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2014 ESINKFEMDFIDEVEKQKELLIKIQHLQQDCDVPSRELRDlklnqnmdlHIEEILKDFSESEFPSIKTEFQQVL--SNRK 2091
Cdd:TIGR01612 1451 NVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKE---------HIDKSKGCKDEADKNAKAIEKNKELfeQYKK 1521
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2092 EMTQFLEEWL---------NTRFDIEKLKNGIQKENDRICQVNNFFNNRIIAIMNESTEFEERSATISKEWEQDLK---S 2159
Cdd:TIGR01612 1522 DVTELLNKYSalaiknkfaKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDiqlS 1601
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2160 LKEKNEKLFKNYQTLKTSLASGAQVNPTTQDNKNPHVTSRATQLTTEKirELENSLHEAKESAMHKESKIIKMQKELEVT 2239
Cdd:TIGR01612 1602 LENFENKFLKISDIKKKINDCLKETESIEKKISSFSIDSQDTELKENG--DNLNSLQEFLESLKDQKKNIEDKKKELDEL 1679
|
1290 1300 1310 1320 1330 1340 1350
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348663 2240 NDIIAKLQAKVHESNK-----CLEKTKETIQVLQDKVALGAKPYKEEIEDLKMKLVKIDLEKMKNAKEFEK 2305
Cdd:TIGR01612 1680 DSEIEKIEIDVDQHKKnyeigIIEKIKEIAIANKEEIESIKELIEPTIENLISSFNTNDLEGIDPNEKLEE 1750
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
475-948 |
4.30e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 62.36 E-value: 4.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 475 TLDTLSEIEWNPATKLLNQENIESELNSLRADY-------DNLVLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKD 547
Cdd:PRK02224 235 TRDEADEVLEEHEERREELETLEAEIEDLRETIaetererEELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 548 QENELSSKVELLREKEDQ----IKKLQEYIDSQKlENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSEN 623
Cdd:PRK02224 315 RREELEDRDEELRDRLEEcrvaAQAHNEEAESLR-EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 624 LELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLID-GKVPKdllCNLELEG------- 695
Cdd:PRK02224 394 EELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEaGKCPE---CGQPVEGsphveti 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 696 -----KITDLQKELNKEVEENEALREEVILLSELKSLPSEVERL--------------RKEIQDKSEELHIITSEKDKLF 756
Cdd:PRK02224 471 eedreRVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLeerredleeliaerRETIEEKRERAEELRERAAELE 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 757 SEVVHKESRVQGLLEEIGKTKDDLAttqsnykstdqefqnfktlhmDFEQKYKMVLEENERMNQeIVNLSKEAQKFDSSL 836
Cdd:PRK02224 551 AEAEEKREAAAEAEEEAEEAREEVA---------------------ELNSKLAELKERIESLER-IRTLLAAIADAEDEI 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 837 GalktELSYKTQELQEKTREVQERLNEMEQLKEQLENR--DSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQE 914
Cdd:PRK02224 609 E----RLREKREALAELNDERRERLAEKRERKRELEAEfdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIG 684
|
490 500 510
....*....|....*....|....*....|....*.
gi 2217348663 915 SLQIERDQLKS--DIHDTVNMNIDTQEQLRNALESL 948
Cdd:PRK02224 685 AVENELEELEElrERREALENRVEALEALYDEAEEL 720
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
848-1362 |
5.41e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.98 E-value: 5.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 848 QELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDI 927
Cdd:PRK02224 237 DEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 928 HDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDleakntqtlTAD 1007
Cdd:PRK02224 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE---------EIE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1008 VKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKEnIEMTIENQEElrllgdELKKQQEIVAQEKNHAIKKE 1087
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE-LEATLRTARE------RVEEAEALLEAGKCPECGQP 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1088 GELSRTCDRLAEVEEKLKEksqqlqeKQQQLLNVQEEMSEMQKKINEIEnlknELKNKELTLEHMEtERLELAQKLNENY 1167
Cdd:PRK02224 461 VEGSPHVETIEEDRERVEE-------LEAELEDLEEEVEEVEERLERAE----DLVEAEDRIERLE-ERREDLEELIAER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1168 EEvkSITKERKVLKELQKSFEterdhlrgyirEIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLE 1247
Cdd:PRK02224 529 RE--TIEEKRERAEELRERAA-----------ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1248 KSHTKLQEEIPVLHEEQELLPNVKEVS-ETQETMNEL-ELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKE 1325
Cdd:PRK02224 596 TLLAAIADAEDEIERLREKREALAELNdERRERLAEKrERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREE 675
|
490 500 510
....*....|....*....|....*....|....*..
gi 2217348663 1326 RDNLKTIKEALEVKHDQLKEhIRETLAKIQESQSKQE 1362
Cdd:PRK02224 676 RDDLQAEIGAVENELEELEE-LRERREALENRVEALE 711
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
517-1188 |
5.97e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 61.67 E-value: 5.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 517 LRTEKEEMELklkEKNDLDEFEALERKTKKDQENELSSKVELLRE----KEDQIKKLQEYIDSQKleniKMDLSYslESI 592
Cdd:pfam15921 115 LQTKLQEMQM---ERDAMADIRRRESQSQEDLRNQLQNTVHELEAakclKEDMLEDSNTQIEQLR----KMMLSH--EGV 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 593 EdpKQMKQTLFDAETVALDAKRE-----SAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEA-KKKMQVDLEKELQ 666
Cdd:pfam15921 186 L--QEIRSILVDFEEASGKKIYEhdsmsTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEAlKSESQNKIELLLQ 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 667 SAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELnkEVEENEALREEVILLSELKSLPSEVERLRKEI-------Q 739
Cdd:pfam15921 264 QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQL--EIIQEQARNQNSMYMRQLSDLESTVSQLRSELreakrmyE 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 740 DKSEELHI-----------ITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLA-TTQSNYKSTDQEFQNFKTLhmdfeqk 807
Cdd:pfam15921 342 DKIEELEKqlvlanselteARTERDQFSQESGNLDDQLQKLLADLHKREKELSlEKEQNKRLWDRDTGNSITI------- 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 808 ykmvleenERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTL 887
Cdd:pfam15921 415 --------DHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTA 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 888 ITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSdihdTVNMNIDTQEQLRNALESLKQHQETINTLKSKISE--- 964
Cdd:pfam15921 487 KKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS----RVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEkdk 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 965 -------EVSRNLHMEENTGETKDEFQQKMVGIDKK---QDLEAKNTQTLTaDVKDNEIIEQQRKIFSLIQEK------- 1027
Cdd:pfam15921 563 vieilrqQIENMTQLVGQHGRTAGAMQVEKAQLEKEindRRLELQEFKILK-DKKDAKIRELEARVSDLELEKvklvnag 641
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1028 NELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNhaiKKEGELSRTCDRLAEVEEKLKEK 1107
Cdd:pfam15921 642 SERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN---KLKMQLKSAQSELEQTRNTLKSM 718
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1108 SQQLQEKQQQLLNVQEEMSEMQKKIN----EIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKEL 1183
Cdd:pfam15921 719 EGSDGHAMKVAMGMQKQITAKRGQIDalqsKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ 798
|
....*
gi 2217348663 1184 QKSFE 1188
Cdd:pfam15921 799 ERRLK 803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
494-900 |
1.28e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 494 ENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKE-KNDLDEFEAlerktkkdqenelssKVELLREKEDQIKKLQEY 572
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLRKELEELSRQISAlRKDLARLEA---------------EVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 573 IDSQKLENIKMDLSYSLESIEDPKQMKQtlfdAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLE 652
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 653 AKKKMQVDLEKELQsafneitkltslidgkvpkdllcnlELEGKITDLQKELNKEVEENEALREEVILLSELK-SLPSEV 731
Cdd:TIGR02168 835 ATERRLEDLEEQIE-------------------------ELSEDIESLAAEIEELEELIEELESELEALLNERaSLEEAL 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 732 ERLRKEIQDKSEELHIItsekdklfsevvhkESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTlhmDFEQKYKMV 811
Cdd:TIGR02168 890 ALLRSELEELSEELREL--------------ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLT 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 812 LEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQL-ENRDSTLQTVEREKTLITE 890
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLtEAKETLEEAIEEIDREARE 1032
|
410
....*....|
gi 2217348663 891 KLQQTLEEVK 900
Cdd:TIGR02168 1033 RFKDTFDQVN 1042
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1693-1896 |
1.57e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.39 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1693 KIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEME 1772
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1773 QLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKER-DNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTA 1851
Cdd:COG4942 111 RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQaEELRADLAELAALRAELEAERAELEALLAELEEERAAL 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2217348663 1852 RMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQ 1896
Cdd:COG4942 191 EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
670-1179 |
1.62e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.44 E-value: 1.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 670 NEITKLTSLIDGKVPKDLLCNL-ELEGKITDLQKELnKEVEEN-----EALREEVILLSELKSLPSEVERLRKEIQDKSE 743
Cdd:PRK02224 187 GSLDQLKAQIEEKEEKDLHERLnGLESELAELDEEI-ERYEEQreqarETRDEADEVLEEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 744 ELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLH-------MDFEQKYKMVLEENE 816
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDeelrdrlEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 817 RMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTL 896
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 897 EEVKTLTQekdDLKQLQESLQIERDQLK-------------SDIHDTVNMNIDTQEQLRNALESLKQHQET----INTLK 959
Cdd:PRK02224 426 EREAELEA---TLRTARERVEEAEALLEagkcpecgqpvegSPHVETIEEDRERVEELEAELEDLEEEVEEveerLERAE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 960 S--KISEEVSRNLHMEENTGE-------TKDEFQQKMVGIDK-KQDLEAK-NTQTLTADVKDNEIIEQQRKIFSLIQEKN 1028
Cdd:PRK02224 503 DlvEAEDRIERLEERREDLEEliaerreTIEEKRERAEELRErAAELEAEaEEKREAAAEAEEEAEEAREEVAELNSKLA 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1029 ELQQMLESV--IAEKEQLKTDLKENIEMTIENQEELRLLGDE----LKKQQEIVAQ-----EKNHAIKKEGELSRTCDRL 1097
Cdd:PRK02224 583 ELKERIESLerIRTLLAAIADAEDEIERLREKREALAELNDErrerLAEKRERKREleaefDEARIEEAREDKERAEEYL 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1098 AEVEEKLKEKsqqlqekQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLElAQKLNENYEEVKSITKER 1177
Cdd:PRK02224 663 EQVEEKLDEL-------REERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDE-AEELESMYGDLRAELRQR 734
|
..
gi 2217348663 1178 KV 1179
Cdd:PRK02224 735 NV 736
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1269-2089 |
2.28e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1269 NVKEVSETQETMNELELLTEQSTT---KDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTikEALEVKHDQLKE 1345
Cdd:PTZ00121 1025 NIEKIEELTEYGNNDDVLKEKDIIdedIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRAD--EATEEAFGKAEE 1102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1346 HIRETLAKIQESQSKQEQSlnMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSV----AKEKDD 1421
Cdd:PTZ00121 1103 AKKTETGKAEEARKAEEAK--KKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARkaedAKKAEA 1180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1422 LQRLQEVLQSESDQLKENIKEIVAKHlETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQ 1501
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEDARKAEAAR-KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1502 EIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAkDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIER 1581
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKKA-DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1582 DQLKEntKEIVAKMKESQEKEYQflkmtavnETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRsvtK 1661
Cdd:PTZ00121 1339 EEAKK--AAEAAKAEAEAAADEA--------EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK---K 1405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1662 ERDDLRSVEETlKVERDQLKENLRETitrdlKIQEELRIAHMHLKEQQETIDKlrgivSEKTDKLSNMQKDLENSNA--K 1739
Cdd:PTZ00121 1406 KADELKKAAAA-KKKADEAKKKAEEK-----KKADEAKKKAEEAKKADEAKKK-----AEEAKKAEEAKKKAEEAKKadE 1474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1740 LQEKIQELKANEHqlitLKKDVNETQKKVSEM---EQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSV------- 1809
Cdd:PTZ00121 1475 AKKKAEEAKKADE----AKKKAEEAKKKADEAkkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkkade 1550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1810 MKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARM-----LSKEHKETVDKLREKISEKTIQISDIQKDLD 1884
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIeevmkLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1885 KSKDELQKKDRQNHQVKPEKRLLSDGQQHLTESLREKcsRIKELLKRYSEmddhyeclnrlSLDLEKEIEFQKELSMRVK 1964
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA--KKAEEDKKKAE-----------EAKKAEEDEKKAAEALKKE 1697
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1965 ANlslpylQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEMDFIDEVEKQKellikIQHLQQDC 2044
Cdd:PTZ00121 1698 AE------EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK-----IAHLKKEE 1766
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 2217348663 2045 DVPSRELRDLKlnqnmDLHIEEILKDFSESEFPSIKTEFQQVLSN 2089
Cdd:PTZ00121 1767 EKKAEEIRKEK-----EAVIEEELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1185-1881 |
2.33e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 59.85 E-value: 2.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1185 KSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEH--------QETIDELRRSVSEKTAQIINTQD----LEKSHTK 1252
Cdd:pfam12128 254 ESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLlrtlddqwKEKRDELNGELSAADAAVAKDRSeleaLEDQHGA 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1253 -LQEEIPVLHEEQELLPNVKevSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKT 1331
Cdd:pfam12128 334 fLDADIETAAADQEQLPSWQ--SELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1332 IKEA-LEVKHDQLKEHIRETLAKIQESQSKQEQSL-NMKEKDNETTKIVSEMEQFKPKDSallrieiemlglskRLQESH 1409
Cdd:pfam12128 412 VAEDdLQALESELREQLEAGKLEFNEEEYRLKSRLgELKLRLNQATATPELLLQLENFDE--------------RIERAR 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1410 DEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINE-LRVNLSEKETEISTIQKQ 1488
Cdd:pfam12128 478 EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHfLRKEAPDWEQSIGKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1489 LEAINDKLQNKIQEIYEKEE------QFNIKQIsEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQi 1562
Cdd:pfam12128 558 ELLHRTDLDPEVWDGSVGGElnlygvKLDLKRI-DVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELE- 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1563 miKEKEEMKRVQEALQIERDQLKE--NTKEIVAKMKESQEKEYQFLKMTAVN--ETQEKMCEIEH--LKEQFETQKLNLE 1636
Cdd:pfam12128 636 --KASREETFARTALKNARLDLRRlfDEKQSEKDKKNKALAERKDSANERLNslEAQLKQLDKKHqaWLEEQKEQKREAR 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1637 nietenirltqilhenleemrsvTKERDDLRSVEETLKVERDQLKENLretitrdLKIQEELRIAHMHLKEQQETIDKLR 1716
Cdd:pfam12128 714 -----------------------TEKQAYWQVVEGALDAQLALLKAAI-------AARRSGAKAELKALETWYKRDLASL 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1717 GIVSEKTDKLSNMQKDLENSNAKLQEKIQELKA-----NEHQLI---TLKKDVNETQKKVSEME-QLKKQIKDQSLTLSK 1787
Cdd:pfam12128 764 GVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyfdwyQETWLQrrpRLATQLSNIERAISELQqQLARLIADTKLRRAK 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1788 LEIE---NLNLAQKLHENLEEMKSVM------KERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEH 1858
Cdd:pfam12128 844 LEMErkaSEKQQVRLSENLRGLRCEMsklatlKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADH 923
|
730 740 750
....*....|....*....|....*....|.
gi 2217348663 1859 K-----ETVDKLREK---ISEKTIQISDIQK 1881
Cdd:pfam12128 924 SgsglaETWESLREEdhyQNDKGIRLLDYRK 954
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1309-2176 |
2.43e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.99 E-value: 2.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1309 NEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKD 1388
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1389 sallrieiEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETI 1468
Cdd:pfam02463 231 --------YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1469 NELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKdSALQSIESKMLE 1548
Cdd:pfam02463 303 LKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLE-QLEEELLAKKKL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1549 LTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKmceiEHLKEQF 1628
Cdd:pfam02463 382 ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK----EELEKQE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1629 ETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQ 1708
Cdd:pfam02463 458 LKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1709 QETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKL 1788
Cdd:pfam02463 538 VENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1789 EIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQ-----LKESLQETKARDLEIQQELKTARMLSKEHKETVD 1863
Cdd:pfam02463 618 DDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLaekseVKASLSELTKELLEIQELQEKAESELAKEEILRR 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1864 KLREKISEKTIQISDIQKDLDKSKDELQKK----DRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHY 1939
Cdd:pfam02463 698 QLEIKKKEQREKEELKKLKLEAEELLADRVqeaqDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELA 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1940 ECLNRLSLDLEKEIEFQKELSMRVKANLSLPYLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKF 2019
Cdd:pfam02463 778 EEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELE 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2020 EMDFIDEVEKQKELLIKIQHLQQDCDVPsRELRDLKLNQNMDLHIEEILKDFSESEFPSIKTEFQQVLSNRKEMTQFLEE 2099
Cdd:pfam02463 858 RLEEEITKEELLQELLLKEEELEEQKLK-DELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEE 936
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2100 WLNTRFDIEKLKNGIQKENDRICQVNNFFNNRIIAIMN---ESTEFEERSATISKEWEQDLKSLKEKNEKLFKNYQTLKT 2176
Cdd:pfam02463 937 PEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKvnlMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETC 1016
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1705-1889 |
4.32e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.92 E-value: 4.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1705 LKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSE-MEQLKKQIKD--- 1780
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEErREELGERARAlyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1781 QSLTLSKLE-----------IENLNLAQKLHE-NLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQEL 1848
Cdd:COG3883 98 SGGSVSYLDvllgsesfsdfLDRLSALSKIADaDADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2217348663 1849 KTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDE 1889
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1429-1952 |
4.53e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 4.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1429 LQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEE 1508
Cdd:TIGR04523 122 LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1509 QFNI--KQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKrvqealqierDQLKE 1586
Cdd:TIGR04523 202 LLSNlkKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK----------KQLSE 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1587 NTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCE---IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKER 1663
Cdd:TIGR04523 272 KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEL 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1664 DDLRSVEETLKVERDQlKENLRETItrdlkiqeelriahmhLKEQQETIDKLRGIVSEKTDKLSNMQKDlENSNAKLQEK 1743
Cdd:TIGR04523 352 TNSESENSEKQRELEE-KQNEIEKL----------------KKENQSYKQEIKNLESQINDLESKIQNQ-EKLNQQKDEQ 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1744 IQELKANEHQLitlkkdVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETL 1823
Cdd:TIGR04523 414 IKKLQQEKELL------EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1824 KLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDEL---------QKKD 1894
Cdd:TIGR04523 488 QKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkkenlekeiDEKN 567
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1895 RQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKE 1952
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
542-1396 |
4.66e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 4.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 542 RKTKKDQENELSSKVELLREKEDQIKKLQEYIDSQKLENIKMDLSYSLESIEDPKQMKQTL-FDAETVALDAKRESAFLR 620
Cdd:PTZ00121 1146 RKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARkAEEERKAEEARKAEDAKK 1225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 621 SENLELKEKMKELATTYKQMEndiqlyqsqlEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDL 700
Cdd:PTZ00121 1226 AEAVKKAEEAKKDAEEAKKAE----------EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 701 QK-ELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEElhiitsekDKLFSEVVHKESRVQGLLEEIGKTKDD 779
Cdd:PTZ00121 1296 KKaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE--------AKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 780 LATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSlgALKTELSYKTQELQEKTREvQE 859
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA--KKKAEEKKKADEAKKKAEE-AK 1444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 860 RLNEMEQLKEQLENRDSTLQTVEREKTliTEKLQQTLEEVKtltqEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQE 939
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKK--ADEAKKKAEEAK----KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 940 QLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVgiDKKQDLEAKNTQTLTAD----VKDNEIIE 1015
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE--EAKKAEEDKNMALRKAEeakkAEEARIEE 1596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1016 QQRKIFSLIQEKNELQQMLESVIAEKEQLKT--DLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT 1093
Cdd:PTZ00121 1597 VMKLYEEEKKMKAEEAKKAEEAKIKAEELKKaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1094 CDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLnenyEEVKSI 1173
Cdd:PTZ00121 1677 AEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA----EEAKKD 1752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1174 TKERKVLKELQKSFETERDHLRGYIREIEATGLQTKeelkiahihlkehqetiDELRRSVSEKTaqiinTQDLEKSHTKL 1253
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE-----------------DEKRRMEVDKK-----IKDIFDNFANI 1810
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1254 QE----EIPVLHEEQELlpnvkEVSETQETMNELELLTEQSTTkdsttlarIEMERLRLNEKFQESQEEIKSLTKERDNL 1329
Cdd:PTZ00121 1811 IEggkeGNLVINDSKEM-----EDSAIKEVADSKNMQLEEADA--------FEKHKFNKNNENGEDGNKEADFNKEKDLK 1877
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348663 1330 KTIKEalEVKHDQLKEHIRETLAKIQESQSkqeqslNMKEKDNETTKIVSEMEQFKPKDSALLRIEI 1396
Cdd:PTZ00121 1878 EDDEE--EIEEADEIEKIDKDDIEREIPNN------NMAGKNNDIIDDKLDKDEYIKRDAEETREEI 1936
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
514-1078 |
5.10e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 5.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 514 YEQLRTEKEEME--LKLKEKNDLDEFEALERKTKKDQENELSSKVELLREKEDQIKKLQEYIDSQKLENIKMDLSYSLES 591
Cdd:COG1196 215 YRELKEELKELEaeLLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 592 IEDPKQMKQTLFDAETVAlDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNE 671
Cdd:COG1196 295 AELARLEQDIARLEERRR-ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 672 ITKLTSLIDGKVpKDLLcnLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSE 751
Cdd:COG1196 374 LAEAEEELEELA-EELL--EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 752 KDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVN--LSKEA 829
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgaVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 830 QKFDSSLGALKTELSYKTQELQEKTREVQERLneMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDL 909
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAA--IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 910 KQLQESLQIERDQL--KSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKM 987
Cdd:COG1196 609 READARYYVLGDTLlgRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 988 vgIDKKQDLEAKNTQTLTADVKDNEIIEQQRkifsliQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGD 1067
Cdd:COG1196 689 --AEEELELEEALLAEEEEERELAEAEEERL------EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
570
....*....|.
gi 2217348663 1068 ELKKQQEIVAQ 1078
Cdd:COG1196 761 DLEELERELER 771
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
552-1049 |
5.61e-08 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 58.55 E-value: 5.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 552 LSSKVELLREKEDQIKKLQEYIDSQKLENIK---------MDLSYSLESIEDPKQMKQTLfDAETVALDAKRESAFLRSE 622
Cdd:COG5022 805 LLGSRKEYRSYLACIIKLQKTIKREKKLRETeevefslkaEVLIQKFGRSLKAKKRFSLL-KKETIYLQSAQRVELAERQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 623 NLELKEKMKELATTYKQMENDIQLYqsqLEAKKKMQVDLEKELQSAFNEITKLTSLIDG---KVPKDL-LCNLELEGKIT 698
Cdd:COG5022 884 LQELKIDVKSISSLKLVNLELESEI---IELKKSLSSDLIENLEFKTELIARLKKLLNNidlEEGPSIeYVKLPELNKLH 960
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 699 DLQKELNKEVEE-NEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKlfsevvhkesrvqglLEEIGKTK 777
Cdd:COG5022 961 EVESKLKETSEEyEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQ---------------LKELPVEV 1025
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 778 DDLATTQSNYKSTDQEFQNFKTLHmdfEQKYKMVLEENE-RMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTRE 856
Cdd:COG5022 1026 AELQSASKIISSESTELSILKPLQ---KLKGLLLLENNQlQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLE 1102
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 857 VQERLNEMEqlkeqlENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQ--LKSDIHDTVNMN 934
Cdd:COG5022 1103 VTNRNLVKP------ANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEanLEALPSPPPFAA 1176
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 935 IDTQEQLRNALESLKQH--QETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNtqtltaDVKDNE 1012
Cdd:COG5022 1177 LSEKRLYQSALYDEKSKlsSSEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFN------NLNKKF 1250
|
490 500 510
....*....|....*....|....*....|....*..
gi 2217348663 1013 IIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLK 1049
Cdd:COG5022 1251 DTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATIN 1287
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
760-1356 |
5.79e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.49 E-value: 5.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 760 VHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGAL 839
Cdd:TIGR04523 29 NKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 840 KTELSYKTQelqektrevqerlnEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIE 919
Cdd:TIGR04523 109 NSEIKNDKE--------------QKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 920 RDQLKSDIHDTVNMNIDTQEQLRN---ALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQD- 995
Cdd:TIGR04523 175 LNLLEKEKLNIQKNIDKIKNKLLKlelLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTq 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 996 -LEAKNTQTLTADV---KDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQ-LKTDLKENIEmtiENQEELRLLGDELK 1070
Cdd:TIGR04523 255 lNQLKDEQNKIKKQlseKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdWNKELKSELK---NQEKKLEEIQNQIS 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1071 KQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIE-----------NLK 1139
Cdd:TIGR04523 332 QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLEskiqnqeklnqQKD 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1140 NELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHL 1219
Cdd:TIGR04523 412 EQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1220 KEHQETIDELrrsvsektaqIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSttla 1299
Cdd:TIGR04523 492 KSKEKELKKL----------NEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE---- 557
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348663 1300 RIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQE 1356
Cdd:TIGR04523 558 NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISS 614
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1554-1943 |
8.25e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 8.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1554 QESQEEIQIMIKEKEEmKRVQEALQIERDQLKENTKEIvaKMKESQEKEYQFLKMTA---VNETQEKMCEIEHLKEQFET 1630
Cdd:PRK02224 186 RGSLDQLKAQIEEKEE-KDLHERLNGLESELAELDEEI--ERYEEQREQARETRDEAdevLEEHEERREELETLEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1631 QKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQE 1710
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1711 TIDKLRGIV-------SEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNET-----------QKKVSEME 1772
Cdd:PRK02224 343 EAESLREDAddleeraEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDApvdlgnaedflEELREERD 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1773 QLKKQIKDQSLTLSKLEiENLNLAQKLHE---------------NLEEMKSVMKERDNLRRVEETLKLERDQLK------ 1831
Cdd:PRK02224 423 ELREREAELEATLRTAR-ERVEEAEALLEagkcpecgqpvegspHVETIEEDRERVEELEAELEDLEEEVEEVEerlera 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1832 ESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDGQ 1911
Cdd:PRK02224 502 EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
410 420 430
....*....|....*....|....*....|..
gi 2217348663 1912 QHLTESlREKCSRIKELLKRYSEMDDHYECLN 1943
Cdd:PRK02224 582 AELKER-IESLERIRTLLAAIADAEDEIERLR 612
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1412-1875 |
1.68e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1412 MKSVAKEKDDLQRLQ----EVLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQK 1487
Cdd:COG4717 48 LERLEKEADELFKPQgrkpELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1488 QLEAIND-----KLQNKIQEIYEKEEQF--NIKQISEVQEKVNELKQfkEHRKAKDSALQSIESKMLELTNRLQESQEEI 1560
Cdd:COG4717 124 LLQLLPLyqeleALEAELAELPERLEELeeRLEELRELEEELEELEA--ELAELQEELEELLEQLSLATEEELQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1561 QIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEyQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIET 1640
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE-RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1641 ENIRLTQILHENLEEMRSV-TKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIV 1719
Cdd:COG4717 281 LVLGLLALLFLLLAREKASlGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1720 SEKTdklsnmQKDLENSNAKLQEKIQElkANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQ-SLTLSKLEIENL-NLAQ 1797
Cdd:COG4717 361 EELQ------LEELEQEIAALLAEAGV--EDEEELRAALEQAEEYQELKEELEELEEQLEELlGELEELLEALDEeELEE 432
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1798 KLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESlqeTKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQ 1875
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEED---GELAELLQELEELKAELRELAEEWAALKLALELLEEARE 507
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1165-2169 |
1.81e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1165 ENYEEVKSITKErkVLKELQKsFETERDHLRGYireieaTGLQTKEELKIAHIHLKEhqetIDELRRSVSEKTAQIintQ 1244
Cdd:TIGR02169 184 ENIERLDLIIDE--KRQQLER-LRREREKAERY------QALLKEKREYEGYELLKE----KEALERQKEAIERQL---A 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1245 DLEKSHTKLQEEIPVLHEE-QELLPNVKEVSETQETMNELELLTEQsttkdsTTLARIEMERLRLNEKFQESQEEIKSLT 1323
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRlEEIEQLLEELNKKIKDLGEEEQLRVK------EKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1324 KERDNLKTIKEALEVKHDQLKEHIRETlaKIQESQSKQEqslnMKEKDNETTKIVSEMEQfkpkdsallrieiemlgLSK 1403
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEE--RKRRDKLTEE----YAELKEELEDLRAELEE-----------------VDK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1404 RLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEIS 1483
Cdd:TIGR02169 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1484 TIQKQLEAINDKLQNKIQEIYEKEeqfniKQISEVQEkvnELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIM 1563
Cdd:TIGR02169 459 QLAADLSKYEQELYDLKEEYDRVE-----KELSKLQR---ELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1564 IKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMT--AVNETQEKMCEIEHLKE-----------QFET 1630
Cdd:TIGR02169 531 GSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATflPLNKMRDERRDLSILSEdgvigfavdlvEFDP 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1631 Q-----------KLNLENIETE-----NIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKEnLRETITrdlKI 1694
Cdd:TIGR02169 611 KyepafkyvfgdTLVVEDIEAArrlmgKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQR-LRERLE---GL 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1695 QEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKdvnETQKKVSEMEQL 1774
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ---EIENVKSELKEL 763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1775 KKQIKDQSLTLSKLEIENLNLAQKL-HENLEEMksvmkeRDNLRRVEETLKLERDQLKESLQETKARDLEIQQelktarm 1853
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALNDLEARLsHSRIPEI------QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY------- 830
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1854 LSKEHKEtvdkLREKISEKTIQISDIQKDLDKSKDELQKKDRQnhqvkpekrllsdgqqhltesLREKCSRIKELLKRYS 1933
Cdd:TIGR02169 831 LEKEIQE----LQEQRIDLKEQIKSIEKEIENLNGKKEELEEE---------------------LEELEAALRDLESRLG 885
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1934 emddhyeclnrlslDLEKEIEfqkelsmrvkanlslpylqtkhieklftanqrcsmefhrimkKLKYVLSYVTKIKEEQH 2013
Cdd:TIGR02169 886 --------------DLKKERD------------------------------------------ELEAQLRELERKIEELE 909
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2014 ESINKFEmdfidevEKQKELLIKIQHLQQDCDvpsrelrdlklnqnmdlHIEEILKdfSESEFPSIKTEFQQVLSNRKEM 2093
Cdd:TIGR02169 910 AQIEKKR-------KRLSELKAKLEALEEELS-----------------EIEDPKG--EDEEIPEEELSLEDVQAELQRV 963
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348663 2094 TQfleewlntrfDIEKLKNgiqkendricqvnnfFNNRIIaimnesTEFEERsatiskewEQDLKSLKEKNEKLFK 2169
Cdd:TIGR02169 964 EE----------EIRALEP---------------VNMLAI------QEYEEV--------LKRLDELKEKRAKLEE 1000
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
624-1187 |
1.85e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.83 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 624 LELKEKMKELA---TTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLEL------- 693
Cdd:PRK01156 169 DKLKDVIDMLRaeiSNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALnelssle 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 694 ------EGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVER--------LRKEIQDKSEELHIITSEKDKLfsEV 759
Cdd:PRK01156 249 dmknryESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRnyindyfkYKNDIENKKQILSNIDAEINKY--HA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 760 VHKEsrvqglLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDF-------EQKYKMVLEEN---ERMNQEIVNLSKEA 829
Cdd:PRK01156 327 IIKK------LSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYnsylksiESLKKKIEEYSkniERMSAFISEILKIQ 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 830 QKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTL----------------------QTVEREKTL 887
Cdd:PRK01156 401 EIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLngqsvcpvcgttlgeeksnhiiNHYNEKKSR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 888 ITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERdqlksdihdtVNMNIDTQEQLRNALESLKQHQETINTLKSKiseevs 967
Cdd:PRK01156 481 LEEKIREIEIEVKDIDEKIVDLKKRKEYLESEE----------INKSINEYNKIESARADLEDIKIKINELKDK------ 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 968 rnlhmeentgETKDEFQQKMVGIDKKQDLEAKNTQTLTAD-VKDNEIIEQQRKIFSLIQEK-NELQQMLESVIAEKEQLK 1045
Cdd:PRK01156 545 ----------HDKYEEIKNRYKSLKLEDLDSKRTSWLNALaVISLIDIETNRSRSNEIKKQlNDLESRLQEIEIGFPDDK 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1046 TDLKENIEmtiENQEELRLLGDELKKQQEIVAQEKnhaikkegELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEM 1125
Cdd:PRK01156 615 SYIDKSIR---EIENEANNLNNKYNEIQENKILIE--------KLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNL 683
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348663 1126 SEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSF 1187
Cdd:PRK01156 684 KKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKRLREAF 745
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1462-1830 |
2.06e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1462 KEQEETINELRVNLSEKETEISTIQKQLEAIndKLQNKIQEIY-EKEEQFNIKQISEVqekVNELKQFKEHRKAKDSALQ 1540
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSL--ERQAEKAERYkELKAELRELELALL---VLRLEELREELEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1541 SIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQierdqlkentkeivakmkesqeKEYQflkmTAVNETQEKMCE 1620
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ----------------------KELY----ALANEISRLEQQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1621 IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRI 1700
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1701 AHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLEN---SNAKLQEKIQELKANEHQ--LITLKKDVNETQKKVSEMEQLK 1775
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERlqqEIEELLKKLEEAELKELQaeLEELEEELEELQEELERLEEAL 463
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2217348663 1776 KQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQL 1830
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1496-1889 |
2.60e-07 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 56.06 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1496 LQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQE 1575
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1576 ALQIERDQLKENTKEIVAKMKESQEKeyqflKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEE 1655
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEED-----IKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1656 MRSVTKERDDLRSVEEtlkvERDQLKENLRETITRdlkIQEELRIAHMHLKEQQETIDKLRGI-----VSEKTDKLsnMQ 1730
Cdd:pfam07888 187 LRSLSKEFQELRNSLA----QRDTQVLQLQDTITT---LTQKLTTAHRKEAENEALLEELRSLqerlnASERKVEG--LG 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1731 KDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEME---QLKKQIKDQSLTLSKLEIENLNLA-QKLHENLEEm 1806
Cdd:pfam07888 258 EELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRarwAQERETLQQSAEADKDRIEKLSAElQRLEERLQE- 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1807 ksvmkERDNLRRVEETLKLERDQLKESLQETKaRDLeiqQELKTARMLSKEHKEtvdKLREKISEKTIQISDIQKDLDKS 1886
Cdd:pfam07888 337 -----ERMEREKLEVELGREKDCNRVQLSESR-REL---QELKASLRVAQKEKE---QLQAEKQELLEYIRQLEQRLETV 404
|
...
gi 2217348663 1887 KDE 1889
Cdd:pfam07888 405 ADA 407
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1620-1833 |
2.76e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 55.79 E-value: 2.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1620 EIEHLKEQFETQKLNLENIET---ENI-RLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQ 1695
Cdd:PHA02562 189 KIDHIQQQIKTYNKNIEEQRKkngENIaRKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1696 EEL----RIAHMHLKEQQ-----ETIDKLRGIVSEKTDKLSNMQKDLEnsnaKLQEKIQELKANEHQLITLKKDVNETQK 1766
Cdd:PHA02562 269 SKIeqfqKVIKMYEKGGVcptctQQISEGPDRITKIKDKLKELQHSLE----KLDTAIDELEEIMDEFNEQSKKLLELKN 344
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348663 1767 KVSEMEQ----LKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKES 1833
Cdd:PHA02562 345 KISTNKQslitLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDS 415
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1198-1780 |
3.43e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.06 E-value: 3.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1198 IREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNvkEVSETQ 1277
Cdd:PRK01156 161 INSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMD--DYNNLK 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1278 ETMNELELLTEqsttkdstTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHdqlKEHIRETLAKIQES 1357
Cdd:PRK01156 239 SALNELSSLED--------MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKN---RNYINDYFKYKNDI 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1358 QSKQEQSLNMKEKDNETTKIVSEMEQfkpkdsallrieiemlglskrLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLK 1437
Cdd:PRK01156 308 ENKKQILSNIDAEINKYHAIIKKLSV---------------------LQKDYNDYIKKKSRYDDLNNQILELEGYEMDYN 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1438 ENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQN----------KIQEIYEKE 1507
Cdd:PRK01156 367 SYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSlnqriralreNLDELSRNM 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1508 EQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQ-EALQIERDQLKE 1586
Cdd:PRK01156 447 EMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEiNKSINEYNKIES 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1587 NTKEIVAKMKESQEKEYQFLKMTAVNEtQEKMCEIEHLkEQFETQKLNL----ENIETENIR-----LTQILHENLEEMR 1657
Cdd:PRK01156 527 ARADLEDIKIKINELKDKHDKYEEIKN-RYKSLKLEDL-DSKRTSWLNAlaviSLIDIETNRsrsneIKKQLNDLESRLQ 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1658 SVTKERDDLRSVEETLKVERDQLKENLRETIT--RDLKIQ-EELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLE 1734
Cdd:PRK01156 605 EIEIGFPDDKSYIDKSIREIENEANNLNNKYNeiQENKILiEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK 684
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 2217348663 1735 NSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSE-------MEQLKKQIKD 1780
Cdd:PRK01156 685 KSRKALDDAKANRARLESTIEILRTRINELSDRINDinetlesMKKIKKAIGD 737
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1080-1803 |
3.59e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 3.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1080 KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELT----------- 1148
Cdd:TIGR04523 25 KNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKnkdkinklnsd 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1149 LEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSF-------ETERDHLRGYIREIEATGLQTKEELKIAHIHLKE 1221
Cdd:TIGR04523 105 LSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFlteikkkEKELEKLNNKYNDLKKQKEELENELNLLEKEKLN 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1222 HQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNvkEVSETQETMNELELLTEQSTTKDSTTLARI 1301
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKD--NIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1302 EMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNmKEKDNETTKIVSEM 1381
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQ-NQISQNNKIISQLN 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1382 EQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCL 1461
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEK 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1462 KEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNkiQEIYEKEEQFNIKQISevqekvNELKQFKEHRKAKDSALQS 1541
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKN--LDNTRESLETQLKVLS------RSINKIKQNLEQKQKELKS 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1542 IESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALqierdqlkenTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEI 1621
Cdd:TIGR04523 494 KEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL----------ESEKKEKESKISDLEDELNKDDFELKKENLEKEI 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1622 EHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIA 1701
Cdd:TIGR04523 564 DEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKL 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1702 HMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQ 1781
Cdd:TIGR04523 644 KQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKL 723
|
730 740
....*....|....*....|..
gi 2217348663 1782 SLTLSKLEIENLNLAQKLHENL 1803
Cdd:TIGR04523 724 DEFSKELENIIKNFNKKFDDAF 745
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
959-1577 |
4.54e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 55.68 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 959 KSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNElqqMLESVI 1038
Cdd:PRK01156 151 RKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIE---RLSIEY 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1039 AEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKkegelsrtcdrLAEVEEKLKEKSQQLQEKQqql 1118
Cdd:PRK01156 228 NNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNY-----------YKELEERHMKIINDPVYKN--- 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1119 lnvQEEMSEMQKKINEIENLKNELKN--KELTLEHMETERLELAQKLNENYEEVKS----ITKERKVLKE-------LQK 1185
Cdd:PRK01156 294 ---RNYINDYFKYKNDIENKKQILSNidAEINKYHAIIKKLSVLQKDYNDYIKKKSryddLNNQILELEGyemdynsYLK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1186 SFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVsektaqiintQDLEKSHTKLQEEIPVLHEEQE 1265
Cdd:PRK01156 371 SIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKL----------QDISSKVSSLNQRIRALRENLD 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1266 llpnvkEVSETQETMNELELL----TEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEvkhd 1341
Cdd:PRK01156 441 ------ELSRNMEMLNGQSVCpvcgTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLE---- 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1342 qlKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALlrieieMLGLSKRLQESHDEMKSVAKEKDd 1421
Cdd:PRK01156 511 --SEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSL------KLEDLDSKRTSWLNALAVISLID- 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1422 lqrlQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQ 1501
Cdd:PRK01156 582 ----IETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKK 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1502 EIYEKEEQfnIKQISEVQEKVNE-----------LKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIM---IKEK 1567
Cdd:PRK01156 658 QIAEIDSI--IPDLKEITSRINDiednlkksrkaLDDAKANRARLESTIEILRTRINELSDRINDINETLESMkkiKKAI 735
|
650
....*....|
gi 2217348663 1568 EEMKRVQEAL 1577
Cdd:PRK01156 736 GDLKRLREAF 745
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1483-1920 |
6.60e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 6.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1483 STIQKQLEAI-NDKLQNKIQEIY---EKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMleltNRLQESQE 1558
Cdd:COG4717 37 STLLAFIRAMlLERLEKEADELFkpqGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEEL----EELEAELE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1559 EIQIMIKEKEEMKRVQEALQiERDQLKENTKEIVAKMKESQEKeyqflkmtaVNETQEKMCEIEHLKEQFETQKLNLENI 1638
Cdd:COG4717 113 ELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEER---------LEELRELEEELEELEAELAELQEELEEL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1639 ETE-NIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHL------------ 1705
Cdd:COG4717 183 LEQlSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLllliaaallall 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1706 ---KEQQETIDKLRGIV---------------------SEKTDKLSNMQKDLENSNAKLQEKIQELKANE----HQLITL 1757
Cdd:COG4717 263 glgGSLLSLILTIAGVLflvlgllallflllarekaslGKEAEELQALPALEELEEEELEELLAALGLPPdlspEELLEL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1758 KKDVNETQKKVSEMEQLKKQIKDQSLtlsKLEIENLnLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQET 1837
Cdd:COG4717 343 LDRIEELQELLREAEELEEELQLEEL---EQEIAAL-LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGEL 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1838 KAR-----DLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKD--LDKSKDELQKKDRQNHQVKPEKRLLSDG 1910
Cdd:COG4717 419 EELlealdEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDgeLAELLQELEELKAELRELAEEWAALKLA 498
|
490
....*....|
gi 2217348663 1911 QQHLTESLRE 1920
Cdd:COG4717 499 LELLEEAREE 508
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1665-1884 |
7.64e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 54.64 E-value: 7.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1665 DLRSVEETLKVERDQLKENLRETITRDLK---IQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQ 1741
Cdd:PHA02562 161 DISVLSEMDKLNKDKIRELNQQIQTLDMKidhIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELT 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1742 EKIQEL-KANEHQLITLKKDVNETQKKVSEMEQLKK----------------QIKDQSLTLSKLEIENLNLAQKLH---E 1801
Cdd:PHA02562 241 DELLNLvMDIEDPSAALNKLNTAAAKIKSKIEQFQKvikmyekggvcptctqQISEGPDRITKIKDKLKELQHSLEkldT 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1802 NLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQK 1881
Cdd:PHA02562 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400
|
...
gi 2217348663 1882 DLD 1884
Cdd:PHA02562 401 EKY 403
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1308-1887 |
8.41e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 54.52 E-value: 8.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1308 LNEKFQESQEEIKSLTK--------ERDNLKTIKEALEVKHDQLKE--HIRETLAKIQeSQSKQEQSLNMKEKDNETTKI 1377
Cdd:PRK01156 188 LEEKLKSSNLELENIKKqiaddeksHSITLKEIERLSIEYNNAMDDynNLKSALNELS-SLEDMKNRYESEIKTAESDLS 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1378 VSEMEQFKPKDSALLRIEIEmlglSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLkeNIKEIVAKHLETEEELKVA 1457
Cdd:PRK01156 267 MELEKNNYYKELEERHMKII----NDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEI--NKYHAIIKKLSVLQKDYND 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1458 HCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNkiqeiYEKEEQFNIKQISEVqekvneLKQFKEHRKAKDS 1537
Cdd:PRK01156 341 YIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEE-----YSKNIERMSAFISEI------LKIQEIDPDAIKK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1538 ALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQiERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEK 1617
Cdd:PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREI 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1618 MCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSvtkERDDLRSVEETLKVERDQLKENLRETITRDLKIQEE 1697
Cdd:PRK01156 489 EIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARA---DLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDS 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1698 LRIAHMHLKEQQETID--KLRGIVSEKTDKLsnmqKDLENSNAKLQEKIQELKA-NEHQLITLKKDVNETQKKVSEMEQL 1774
Cdd:PRK01156 566 KRTSWLNALAVISLIDieTNRSRSNEIKKQL----NDLESRLQEIEIGFPDDKSyIDKSIREIENEANNLNNKYNEIQEN 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1775 KKQIkdqsltlskleienlnlaQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARdleiqqeLKTARML 1854
Cdd:PRK01156 642 KILI------------------EKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKA-------LDDAKAN 696
|
570 580 590
....*....|....*....|....*....|...
gi 2217348663 1855 SKEHKETVDKLREKISEKTIQISDIQKDLDKSK 1887
Cdd:PRK01156 697 RARLESTIEILRTRINELSDRINDINETLESMK 729
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
492-1214 |
8.54e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.59 E-value: 8.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 492 NQENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQENELSSKVELLREKEDQIKKLQE 571
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 572 YIDSQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMEndiqlyQSQL 651
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL------SSAA 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 652 EAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEV 731
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 732 ERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEfqnfKTLHMDFEQKYKMV 811
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLG----DLGVAVENYKVAIS 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 812 LEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEK 891
Cdd:pfam02463 547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVE 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 892 LQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETIN-----TLKSKISEEV 966
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKeeilrRQLEIKKKEQ 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 967 SRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKT 1046
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1047 DLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKS------QQLQEKQQQLLN 1120
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLeklaeeELERLEEEITKE 866
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1121 VQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIRE 1200
Cdd:pfam02463 867 ELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEAD 946
|
730
....*....|....
gi 2217348663 1201 IEATGLQTKEELKI 1214
Cdd:pfam02463 947 EKEKEENNKEEEEE 960
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1221-1903 |
9.20e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.80 E-value: 9.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1221 EHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHE----EQELLPNVKEV--------SETQETMNELELLTE 1288
Cdd:pfam01576 6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEqlqaETELCAEAEEMrarlaarkQELEEILHELESRLE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1289 QSTTKDSttlaRIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIreTLAKIQESQSKQEQSLnMK 1368
Cdd:pfam01576 86 EEEERSQ----QLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDI--LLLEDQNSKLSKERKL-LE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1369 EKDNETTKIVSEMEQfKPKDSALLRIEIEMLglskrLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKhl 1448
Cdd:pfam01576 159 ERISEFTSNLAEEEE-KAKSLSKLKNKHEAM-----ISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQ-- 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1449 eteeelkvahcclkeqeetINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEeqfniKQISEVQEKVNELKQF 1528
Cdd:pfam01576 231 -------------------IAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELE-----AQISELQEDLESERAA 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1529 KEH-RKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIE----RDQLKENTKEIVAKMKESQEKEY 1603
Cdd:pfam01576 287 RNKaEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEEtrshEAQLQEMRQKHTQALEELTEQLE 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1604 QFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIR--LTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLK 1681
Cdd:pfam01576 367 QAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRkkLEGQLQELQARLSESERQRAELAEKLSKLQSELESVS 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1682 ENLRETITRDLKIQEELRIAHMHLKEQQEtidkLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQE----LKANEHQLITL 1757
Cdd:pfam01576 447 SLLNEAEGKNIKLSKDVSSLESQLQDTQE----LLQEETRQKLNLSTRLRQLEDERNSLQEQLEEeeeaKRNVERQLSTL 522
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1758 KKDVNETQKKVSEMEQLKKQIKDQSLTLSKlEIENLNlaQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQET 1837
Cdd:pfam01576 523 QAQLSDMKKKLEEDAGTLEALEEGKKRLQR-ELEALT--QQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNL 599
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348663 1838 KARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQNHQVKPE 1903
Cdd:pfam01576 600 EKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAE 665
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1461-1958 |
9.35e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 9.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1461 LKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEqfNIKQISEVQEKVNELKQFKEHRKAKDSALQ 1540
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISS--ELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1541 SIESKMLELTNRLQESQEEIQIMIKEKEEmkrvqealqiERDQLKENTKEIvakmKESQEKEyqflkmtavnetqEKMCE 1620
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKK----------EIEELEEKVKEL----KELKEKA-------------EEYIK 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1621 IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLR--ETITRDLKIQEEL 1698
Cdd:PRK03918 298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElyEEAKAKKEELERL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1699 RIAHM-----HLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKvSEMEQ 1773
Cdd:PRK03918 378 KKRLTgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK-ELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1774 LKKQIKDQSLTLSKLEienlNLAQKLHENLEEMKSVMKERDNLRRVEETLklerDQLKESLQETKARDLEiqqELktarm 1853
Cdd:PRK03918 457 YTAELKRIEKELKEIE----EKERKLRKELRELEKVLKKESELIKLKELA----EQLKELEEKLKKYNLE---EL----- 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1854 lsKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDgqqHLTESLREKCSRIKELLKRYS 1933
Cdd:PRK03918 521 --EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAE---LLKELEELGFESVEELEERLK 595
|
490 500
....*....|....*....|....*
gi 2217348663 1934 EMDDHYECLNRLSlDLEKEIEFQKE 1958
Cdd:PRK03918 596 ELEPFYNEYLELK-DAEKELEREEK 619
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1263-1509 |
1.05e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1263 EQELLPNVKEVSETQETMNElellTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQ 1342
Cdd:COG4942 26 EAELEQLQQEIAELEKELAA----LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1343 LKEHIRETLAKIQESQSKQEQSLnmkekdnettkivsemeQFKPKDSALLRIEIEMLG-LSKRLQEshdEMKSVAKEKDD 1421
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLAL-----------------LLSPEDFLDAVRRLQYLKyLAPARRE---QAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1422 LQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQ 1501
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEAL-------KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
....*...
gi 2217348663 1502 EIYEKEEQ 1509
Cdd:COG4942 235 EAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
722-927 |
1.13e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 722 SELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLH 801
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 802 MDFEQKYKMVLEENERMNQ----EIVNLSKEAQKFDSSLGALKtelsYKTQELQEKTREVQERLNEMEQLKEQLENRDST 877
Cdd:COG4942 100 EAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLK----YLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2217348663 878 LQTVEREKTLITEKLQQTLEE----VKTLTQEKDDLKQLQESLQIERDQLKSDI 927
Cdd:COG4942 176 LEALLAELEEERAALEALKAErqklLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1487-2411 |
1.17e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.28 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1487 KQLEAINDKLQNKIQEIyeKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE 1566
Cdd:TIGR00606 186 KALETLRQVRQTQGQKV--QEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1567 KEEMKRVQEALQIERDQLKENTKEIVAKMK------ESQEKEYQFLKMTAVNETQEKM--CEIEHLKEQFETQKLNLENI 1638
Cdd:TIGR00606 264 IMKLDNEIKALKSRKKQMEKDNSELELKMEkvfqgtDEQLNDLYHNHQRTVREKERELvdCQRELEKLNKERRLLNQEKT 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1639 ETEN--IRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKE-NLRETITRDLKIQE-ELRIAHMHLKEQQETIDK 1714
Cdd:TIGR00606 344 ELLVeqGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSErQIKNFHTLVIERQEdEAKTAAQLCADLQSKERL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1715 LRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLK---KDVNETQKKVSEMEQLKKQIKDQSLTLSK---- 1787
Cdd:TIGR00606 424 KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEgssDRILELDQELRKAERELSKAEKNSLTETLkkev 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1788 --LEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQlKESLQETKARDLEIQQELKTARMLSKEHKETVDKL 1865
Cdd:TIGR00606 504 ksLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDK-DEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1866 REKISEKTIQISDIQKdldkskdELQKKDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKrysemddhyecLNRL 1945
Cdd:TIGR00606 583 SKEINQTRDRLAKLNK-------ELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD-----------LERL 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1946 SLDLEKEiefQKELSMRVKANlslpYLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEM--DF 2023
Cdd:TIGR00606 645 KEEIEKS---SKQRAMLAGAT----AVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSteSE 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2024 IDEVEKQKE-LLIKIQHLQQDCDVPSRELRDLK-LNQNMDLHIEEILKDFSESEfpsikTEFQQVLSNRKEMTQFLEEWL 2101
Cdd:TIGR00606 718 LKKKEKRRDeMLGLAPGRQSIIDLKEKEIPELRnKLQKVNRDIQRLKNDIEEQE-----TLLGTIMPEEESAKVCLTDVT 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2102 NTRFDIEKLKNGIQKENDRICQVNNFFNNRIIAIMN-ESTEFEERSATISKEWEQDLKSLKEKNEKLfkNYQTLKTSLAS 2180
Cdd:TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNqEKQEKQHELDTVVSKIELNRKLIQDQQEQI--QHLKSKTNELK 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2181 GAQVNPTTQDNKNPHVTSRATQLTTEkIRELENSLHEAKESAMHKESKIIKMQKELEVT----NDIIAKLQAKVHESNKC 2256
Cdd:TIGR00606 871 SEKLQIGTNLQRRQQFEEQLVELSTE-VQSLIREIKDAKEQDSPLETFLEKDQQEKEELisskETSNKKAQDKVNDIKEK 949
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2257 LEKTKETIQVLQDKVALGAKPYKEEIEDLKMKLVKIDLEKMKNAKEFEKEISATKATVEYQKEVIRLLRENLRRSQQAQD 2336
Cdd:TIGR00606 950 VKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENE 1029
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348663 2337 TSVISEhtdpqpsnkplTCGGGSGIVQNTKALILKSEHIRLEKEISKLKQQNEQLIKQKNELLSNNQHLSNEVKT 2411
Cdd:TIGR00606 1030 LKEVEE-----------ELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1134-1683 |
1.43e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1134 EIENLKNELKNKELTLEHMET--ERLELAQKLNENYEEVKSITKERKVLKELQKSF-----ETERDHLRGYIREIEATGL 1206
Cdd:COG4913 226 AADALVEHFDDLERAHEALEDarEQIELLEPIRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1207 QTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINT-----QDLEKSHTKLQE------------EIPVLHEEQELLPN 1269
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQlereiERLERELEERERrrarleallaalGLPLPASAEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1270 VKEVSETQETMNELELLTEQsttkdstTLARIEMERLRLNEKFQESQEEIKSLTKERDNL--------KTIKEALEVKHD 1341
Cdd:COG4913 386 RAEAAALLEALEEELEALEE-------ALAEAEAALRDLRRELRELEAEIASLERRKSNIparllalrDALAEALGLDEA 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1342 QLK---EHIretlakiqesqskqeqslNMKEKDNE-------------TTKIVSEmEQFKpkdsALLRIeIEMLGLSKRL 1405
Cdd:COG4913 459 ELPfvgELI------------------EVRPEEERwrgaiervlggfaLTLLVPP-EHYA----AALRW-VNRLHLRGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1406 --QESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHL-----ETEEELK----------------VAHCC-- 1460
Cdd:COG4913 515 vyERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFdyvcvDSPEELRrhpraitragqvkgngTRHEKdd 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1461 ---LKEQ-------EETINELRVNLSEKETEISTIQKQLEAINDKLQN--KIQEIYEK--EEQFNIKQISEVQEKVNELK 1526
Cdd:COG4913 595 rrrIRSRyvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDAlqERREALQRlaEYSWDEIDVASAEREIAELE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1527 QFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAkmKESQEKEYQFL 1606
Cdd:COG4913 675 AELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED--LARLELRALLE 752
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348663 1607 KMTAVNETQEKMCEI-EHLKEQFETQKLNLENIETeniRLTQILHENLEEMRSVTKE-RDDLRSVEETLKvERDQLKEN 1683
Cdd:COG4913 753 ERFAAALGDAVERELrENLEERIDALRARLNRAEE---ELERAMRAFNREWPAETADlDADLESLPEYLA-LLDRLEED 827
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
530-1644 |
1.49e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.90 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 530 EKNDLDEFEALERKTKKDQENELSSKVellrekedqikklqEYIDSQKLENIKMDLSYsLESIEDPKQMKQTLFDAETVA 609
Cdd:TIGR00606 106 KKTEFKTLEGVITRYKHGEKVSLSSKC--------------AEIDREMISHLGVSKAV-LNNVIFCHQEDSNWPLSEGKA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 610 LDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKdllc 689
Cdd:TIGR00606 171 LKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENE---- 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 690 nlelegkiTDLQKELNKEVEEN-EALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESR--- 765
Cdd:TIGR00606 247 --------LDPLKNRLKEIEHNlSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVReke 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 766 -----VQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENErMNQEIVNLSKEA---QKFDSSLG 837
Cdd:TIGR00606 319 relvdCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLA-TRLELDGFERGPfseRQIKNFHT 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 838 ALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQE-----KDDLKQL 912
Cdd:TIGR00606 398 LVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQlegssDRILELD 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 913 QESLQIERDQLKSDIHDTVnmnidtqEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDK 992
Cdd:TIGR00606 478 QELRKAERELSKAEKNSLT-------ETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQ 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 993 KQDLEAKNTQTLTADVKDneiieqqrkifslIQEKNELQQMLESVIAEKEQLKtdlkeniemtienqEELRLLGDELKKQ 1072
Cdd:TIGR00606 551 IRKIKSRHSDELTSLLGY-------------FPNKKQLEDWLHSKSKEINQTR--------------DRLAKLNKELASL 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1073 QEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNvQEEMSEMQKKINEIENLKNELKNKELTLEHM 1152
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKS-SKQRAMLAGATAVYSQFITQLTDENQSCCPV 682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1153 ETERLELAQKLNENYEEVKSITK----ERKVLKELQKSFETERDHLRGYIrEIEATGLQTKEElkiahiHLKEHQETIDE 1228
Cdd:TIGR00606 683 CQRVFQTEAELQEFISDLQSKLRlapdKLKSTESELKKKEKRRDEMLGLA-PGRQSIIDLKEK------EIPELRNKLQK 755
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1229 LRRSVSEKtaqiinTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTK-DSTTLARIEMErlr 1307
Cdd:TIGR00606 756 VNRDIQRL------KNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKlQGSDLDRTVQQ--- 826
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1308 LNEKFQESQEEIKSLTKERDNLKTIKE-------ALEVKHDQLKEHIRETLAKIQESQSKQEQSLnmkEKDNETTKIVSE 1380
Cdd:TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQdqqeqiqHLKSKTNELKSEKLQIGTNLQRRQQFEEQLV---ELSTEVQSLIRE 903
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1381 MEQFKPKDSALLRIeiemlgLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKvahcc 1460
Cdd:TIGR00606 904 IKDAKEQDSPLETF------LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYL----- 972
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1461 lKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQ-NKIQEIYEKEEQFNIKQISEVQEKVNELKQF-KEHRKAKDSA 1538
Cdd:TIGR00606 973 -KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDtQKIQERWLQDNLTLRKRENELKEVEEELKQHlKEMGQMQVLQ 1051
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1539 LQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERD--QLKENTKEIVAKMKESQE------KEYQFLKMTA 1610
Cdd:TIGR00606 1052 MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQfrDAEEKYREMMIVMRTTELvnkdldIYYKTLDQAI 1131
|
1130 1140 1150
....*....|....*....|....*....|....
gi 2217348663 1611 VNETQEKMCEIEHLKEQFETQKLNLENIETENIR 1644
Cdd:TIGR00606 1132 MKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIR 1165
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1620-1852 |
1.59e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1620 EIEHLKEQFETqklnLENIETENIR-------LTQILhENLEEMRSVTKERDDLRSVEETLKVERDQLK----ENLRETI 1688
Cdd:COG4913 226 AADALVEHFDD----LERAHEALEDareqielLEPIR-ELAERYAAARERLAELEYLRAALRLWFAQRRlellEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1689 TRDL-KIQEELRIAHMHLKEQQETIDKLRGIVSE-KTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQK 1766
Cdd:COG4913 301 RAELaRLEAELERLEARLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1767 kvsEMEQLKKQIKDQSLTLSkleienlnlaqklhenlEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQ 1846
Cdd:COG4913 381 ---EFAALRAEAAALLEALE-----------------EELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPA 440
|
....*.
gi 2217348663 1847 ELKTAR 1852
Cdd:COG4913 441 RLLALR 446
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1200-1788 |
1.68e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1200 EIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEktAQIINtqdlEKSHTKLQEEIpvlheeQELLPNVKEVSETQET 1279
Cdd:pfam05483 89 KIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQE--LQFEN----EKVSLKLEEEI------QENKDLIKENNATRHL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1280 MNELELLTEQSTTKDSttlaRIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVkhdQLKEHIRETLAKIQESQS 1359
Cdd:pfam05483 157 CNLLKETCARSAEKTK----KYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARL---EMHFKLKEDHEKIQHLEE 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1360 KQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEmlglsKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKEN 1439
Cdd:pfam05483 230 EYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESR-----DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMS 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1440 IKEIVAKHLETEEELKVAH---CCLKEQEET----INELRVNLSEKETEISTIQKQLEAIndkLQNKIQEIYEKEEQFNI 1512
Cdd:pfam05483 305 LQRSMSTQKALEEDLQIATktiCQLTEEKEAqmeeLNKAKAAHSFVVTEFEATTCSLEEL---LRTEQQRLEKNEDQLKI 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1513 KQIsEVQEKVNELKQFKEHRKAKDSALQSIESKMLE-------------LTNRLQESQEEIQIMIKEKE-EMKRVQEALQ 1578
Cdd:pfam05483 382 ITM-ELQKKSSELEEMTKFKNNKEVELEELKKILAEdeklldekkqfekIAEELKGKEQELIFLLQAREkEIHDLEIQLT 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1579 IERDQLKENTKEIVAKMKESQEKEYQFLKMTAVN-----ETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILhENL 1653
Cdd:pfam05483 461 AIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCdklllENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQI-ENL 539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1654 EEMRsvTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDL 1733
Cdd:pfam05483 540 EEKE--MNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQEN 617
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348663 1734 ENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEM-EQLKKQIKDQSLTLSKL 1788
Cdd:pfam05483 618 KALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIiDNYQKEIEDKKISEEKL 673
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1403-1827 |
1.73e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.62 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1403 KRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEI--VAKHLETEEELKVAHCCLKEQEETINELRV------N 1474
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELeeLREELEKLEKLLQLLPLYQELEALEAELAElperleE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1475 LSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQ 1554
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1555 ESQEEIQImikeKEEMKRVQEALQI------------ERDQLKENTKEIVAKMKESQE----KEYQFLKMTAVNETQEKM 1618
Cdd:COG4717 231 QLENELEA----AALEERLKEARLLlliaaallallgLGGSLLSLILTIAGVLFLVLGllalLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1619 CEIEHLKEQFETQKLN--LENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE--RDQLKENLRETITRDLki 1694
Cdd:COG4717 307 LQALPALEELEEEELEelLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEelEQEIAALLAEAGVEDE-- 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1695 qEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSN-AKLQEKIQELKAnehQLITLKKDVNETQKKVSEMEQ 1773
Cdd:COG4717 385 -EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeEELEEELEELEE---ELEELEEELEELREELAELEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 2217348663 1774 LKKQIKDQSlTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLER 1827
Cdd:COG4717 461 ELEQLEEDG-ELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
629-1602 |
2.62e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.26 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 629 KMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKvpkdllcNLELEGKITDLQKELNKEV 708
Cdd:pfam01576 16 KVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAAR-------KQELEEILHELESRLEEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 709 EENEALReevillselkslpSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYK 788
Cdd:pfam01576 89 ERSQQLQ-------------NEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 789 STDQEFQNFKTLHMDFEQKYKMVLE---ENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLnemE 865
Cdd:pfam01576 156 LLEERISEFTSNLAEEEEKAKSLSKlknKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQI---A 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 866 QLKEQLENRDSTLQTVErekTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQ-----------------LKSDIH 928
Cdd:pfam01576 233 ELRAQLAKKEEELQAAL---ARLEEETAQKNNALKKIRELEAQISELQEDLESERAArnkaekqrrdlgeeleaLKTELE 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 929 DTVNMNIDTQE----------QLRNALES-LKQHQETINTLKSKISEEVsrnlhmeENTGETKDEFQQKMVGIDK-KQDL 996
Cdd:pfam01576 310 DTLDTTAAQQElrskreqevtELKKALEEeTRSHEAQLQEMRQKHTQAL-------EELTEQLEQAKRNKANLEKaKQAL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 997 EAKNT------QTLTADVKDNEiiEQQRKIFSLIQE-----------KNELQQMLESVIAEKEQLKTDLKENIEMTIENQ 1059
Cdd:pfam01576 383 ESENAelqaelRTLQQAKQDSE--HKRKKLEGQLQElqarlseserqRAELAEKLSKLQSELESVSSLLNEAEGKNIKLS 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1060 EELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKIN------ 1133
Cdd:pfam01576 461 KDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEedagtl 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1134 ------------EIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFET------------ 1189
Cdd:pfam01576 541 ealeegkkrlqrELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQmlaeekaisary 620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1190 --ERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRS----VSEKTAQIINTQDLEKSHTKLQEeipvlhee 1263
Cdd:pfam01576 621 aeERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEmedlVSSKDDVGKNVHELERSKRALEQ-------- 692
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1264 qellpnvkEVSETQETMNELEllTEQSTTKDSTTLARIEMERLRLNEkfqesqeeiksltkERDnLKTIKEALEVKHDQL 1343
Cdd:pfam01576 693 --------QVEEMKTQLEELE--DELQATEDAKLRLEVNMQALKAQF--------------ERD-LQARDEQGEEKRRQL 747
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1344 KEHIRETLAKIQESQSKQEQSLNMKEkdnettKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQEshdEMKSVAKEKDDLQ 1423
Cdd:pfam01576 748 VKQVRELEAELEDERKQRAQAVAAKK------KLELDLKELEAQIDAANKGREEAVKQLKKLQA---QMKDLQRELEEAR 818
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1424 RLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEI 1503
Cdd:pfam01576 819 ASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEEL 898
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1504 yeKEEQFNIKQISEVQEKV--------NELKQFKEHRKAKDSALQSIESKMLELTNRLQEsqEEIQIMIKEKEEMKRVQE 1575
Cdd:pfam01576 899 --EEEQSNTELLNDRLRKStlqveqltTELAAERSTSQKSESARQQLERQNKELKAKLQE--MEGTVKSKFKSSIAALEA 974
|
1050 1060
....*....|....*....|....*..
gi 2217348663 1576 ALQIERDQLKENTKEIVAKMKESQEKE 1602
Cdd:pfam01576 975 KIAQLEEQLEQESRERQAANKLVRRTE 1001
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
477-1071 |
2.79e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 477 DTLSEIEwNPATKLLNQENIESELNSLRADYDNLVLDYEQLRTEKE-------EMELKLKEkNDLDEFEAlERKTKKDQE 549
Cdd:COG4913 235 DDLERAH-EALEDAREQIELLEPIRELAERYAAARERLAELEYLRAalrlwfaQRRLELLE-AELEELRA-ELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 550 NELSSKVELLREKEDQIKKLQEYIDSQKLENIKMDLSySLESIEDPKQMKQTLFDAETVALDAKRESAflRSENLELKEK 629
Cdd:COG4913 312 ERLEARLDALREELDELEAQIRGNGGDRLEQLEREIE-RLERELEERERRRARLEALLAALGLPLPAS--AEEFAALRAE 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 630 MKELATTYKQMENDIQLYQSQLEAKKKmqvDLEKELQSAFNEITKLT---SLIDGKVP--KDLLCNlELEGKITDLQ--K 702
Cdd:COG4913 389 AAALLEALEEELEALEEALAEAEAALR---DLRRELRELEAEIASLErrkSNIPARLLalRDALAE-ALGLDEAELPfvG 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 703 ELnKEVEENEALREEVI----------LLSELKSLP---SEVERLRKE-------IQDKSEELHIITSEKDKLFSEVVHK 762
Cdd:COG4913 465 EL-IEVRPEEERWRGAIervlggfaltLLVPPEHYAaalRWVNRLHLRgrlvyerVRTGLPDPERPRLDPDSLAGKLDFK 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 763 ESRVQGLLE-EIGKTKDDLATTqsnyksTDQEFQNF-------------KTLH-MDF--------------EQKYKMVLE 813
Cdd:COG4913 544 PHPFRAWLEaELGRRFDYVCVD------SPEELRRHpraitragqvkgnGTRHeKDDrrrirsryvlgfdnRAKLAALEA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 814 ENERMNQEIVNLSKEAQKFDSSLGALKTELS-----YKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLI 888
Cdd:COG4913 618 ELAELEEELAEAEERLEALEAELDALQERREalqrlAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEEL 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 889 TEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNM--------------NIDTQEQLRNALESLKQHQET 954
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLarlelralleerfaAALGDAVERELRENLEERIDA 777
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 955 INTLKSKISEEVSRnlHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQtltadVKDNEIIEQQRKIFSLIQEKNelqqml 1034
Cdd:COG4913 778 LRARLNRAEEELER--AMRAFNREWPAETADLDADLESLPEYLALLDR-----LEEDGLPEYEERFKELLNENS------ 844
|
650 660 670
....*....|....*....|....*....|....*..
gi 2217348663 1035 esvIAEKEQLKTDLKENIEmTIEnqEELRLLGDELKK 1071
Cdd:COG4913 845 ---IEFVADLLSKLRRAIR-EIK--ERIDPLNDSLKR 875
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1436-1698 |
3.18e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 52.62 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1436 LKENIKEIVAK-HleteeELKVAHCCLKEQEETINELRvNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQ 1514
Cdd:PRK05771 14 LKSYKDEVLEAlH-----ELGVVHIEDLKEELSNERLR-KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1515 ISEVQEKVNElkqfkehrkakdsalqsIESKMLELTNRLQESQEEIQIMIKEKEEMKRVqEALQIERDQLK--ENTKEIV 1592
Cdd:PRK05771 88 IKDVEEELEK-----------------IEKEIKELEEEISELENEIKELEQEIERLEPW-GNFDLDLSLLLgfKYVSVFV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1593 AKMKESQEKEYQ----FLKMTAVNETQEKM-----CEIEHLKEQFET-QKLNLENIETENIR-LTQILHENLEEMRSVTK 1661
Cdd:PRK05771 150 GTVPEDKLEELKlesdVENVEYISTDKGYVyvvvvVLKELSDEVEEElKKLGFERLELEEEGtPSELIREIKEELEEIEK 229
|
250 260 270
....*....|....*....|....*....|....*..
gi 2217348663 1662 ERDDLRSVEETLKVERDQLKENLRETITRDLKIQEEL 1698
Cdd:PRK05771 230 ERESLLEELKELAKKYLEELLALYEYLEIELERAEAL 266
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1410-1604 |
4.95e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 4.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1410 DEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELrvnlsekETEISTIQKQL 1489
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-------LEALQAEIDKL-------QAEIAEAEAEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1490 EAINDKLQNKIQEIYEKEEQFN--------------------IKQISE-VQEKVNELKQFKEHRKAKDSALQSIESKMLE 1548
Cdd:COG3883 82 EERREELGERARALYRSGGSVSyldvllgsesfsdfldrlsaLSKIADaDADLLEELKADKAELEAKKAELEAKLAELEA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348663 1549 LTNRLQESQEEIQimiKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQ 1604
Cdd:COG3883 162 LKAELEAAKAELE---AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
978-1578 |
5.17e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 5.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 978 ETKDEFQQKM---VGIDKKQDLE-------AKNTQTLTADVKDN-----EIIEQQRKIFSLIQEKNELQQMLESVIAEKE 1042
Cdd:COG4913 173 DSFSAYLARLrrrLGIGSEKALRllhktqsFKPIGDLDDFVREYmleepDTFEAADALVEHFDDLERAHEALEDAREQIE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1043 QLkTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRtcDRLAEVEEKLKEKSQQLQEKQQQLLNVQ 1122
Cdd:COG4913 253 LL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELR--AELARLEAELERLEARLDALREELDELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1123 EEMSemQKKINEIENLKNELKNKELTLEHMETERLELAQKLN----ENYEEVKSITKERKVLKELQKSFETERDHLRGYI 1198
Cdd:COG4913 330 AQIR--GNGGDRLEQLEREIERLERELEERERRRARLEALLAalglPLPASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1199 REIEATGLQTKEElkiahihLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKL-QEEIPVLHEEQELLPN-------- 1269
Cdd:COG4913 408 AEAEAALRDLRRE-------LRELEAEIASLERRKSNIPARLLALRDALAEALGLdEAELPFVGELIEVRPEeerwrgai 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1270 --------------------------------------VKEVSETQETMNELE-LLTEQSTTKDSTTLARIEMErlrLNE 1310
Cdd:COG4913 481 ervlggfaltllvppehyaaalrwvnrlhlrgrlvyerVRTGLPDPERPRLDPdSLAGKLDFKPHPFRAWLEAE---LGR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1311 KFQ----ESQEEI----KSLTKE-------------------------RDNLKTIkEALEVKHDQLKEHIRETLAKIQES 1357
Cdd:COG4913 558 RFDyvcvDSPEELrrhpRAITRAgqvkgngtrhekddrrrirsryvlgFDNRAKL-AALEAELAELEEELAEAEERLEAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1358 QSKQEQslnMKEKDNETTKIvsEMEQFKPKDSALLRIEIEMLGLSK-RLQESHDEMKSVAKEKDDLQRLQEVLQSESDQL 1436
Cdd:COG4913 637 EAELDA---LQERREALQRL--AEYSWDEIDVASAEREIAELEAELeRLDASSDDLAALEEQLEELEAELEELEEELDEL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1437 KENIKEIVAKHLETEEELKVAHCCLKEQEETINEL----------RVNLSEKETEIS-TIQKQLEAINDKLQNKIQEIYE 1505
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralleerfaAALGDAVERELReNLEERIDALRARLNRAEEELER 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1506 KEEQFNIKQISEVQE------------------KVNELKQFKEhrKAKDSALQSIESKMLELTNRLQESQEEIqimikeK 1567
Cdd:COG4913 792 AMRAFNREWPAETADldadleslpeylalldrlEEDGLPEYEE--RFKELLNENSIEFVADLLSKLRRAIREI------K 863
|
730
....*....|.
gi 2217348663 1568 EEMKRVQEALQ 1578
Cdd:COG4913 864 ERIDPLNDSLK 874
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1485-1789 |
5.49e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.05 E-value: 5.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1485 IQKQLEAINDKLQnkiQEIYEKEEQFNIKQisEVQEKVNEL---KQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQ 1561
Cdd:pfam17380 277 IVQHQKAVSERQQ---QEKFEKMEQERLRQ--EKEEKAREVerrRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1562 IMIKE--KEEMKRV-QEALQIERDQLKEnTKEIVAKMKESQEKEYQFLKMTAVNETQEkmceiEHLKEQFETQKLNLENI 1638
Cdd:pfam17380 352 RIRQEerKRELERIrQEEIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVKILE-----EERQRKIQQQKVEMEQI 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1639 ETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE--RDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLR 1716
Cdd:pfam17380 426 RAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVErlRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERK 505
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348663 1717 GIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQlitlkkdvnETQKKVSEMEQLKKQIKDQSLTLSKLE 1789
Cdd:pfam17380 506 QAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEER---------RKQQEMEERRRIQEQMRKATEERSRLE 569
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1381-1840 |
5.62e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 51.67 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1381 MEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKekdDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVahcc 1460
Cdd:pfam05557 19 KQMELEHKRARIELEKKASALKRQLDRESDRNQELQK---RIRLLEKREAEAEEALREQAELNRLKKKYLEALNKK---- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1461 LKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQisevqEKVNELKQFKEHRKAKDSALQ 1540
Cdd:pfam05557 92 LNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLK-----AKASEAEQLRQNLEKQQSSLA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1541 SIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEaLQIERDQLKENTKEIvakmkeSQEKEYQFLKMTAVNETQEKMCE 1620
Cdd:pfam05557 167 EAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPE-LEKELERLREHNKHL------NENIENKLLLKEEVEDLKRKLER 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1621 IEHLKEQFETQKLNLENIETEN---IRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEE 1697
Cdd:pfam05557 240 EEKYREEAATLELEKEKLEQELqswVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1698 LRIAHMH-------LKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEhQLITLKKDVNETQKKVSE 1770
Cdd:pfam05557 320 LAQYLKKiedlnkkLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLE-RIEEAEDMTQKMQAHNEE 398
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348663 1771 ME----QLKKQIKDQSLTLSKLEIENLNLAQKlhENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKAR 1840
Cdd:pfam05557 399 MEaqlsVAEEELGGYKQQAQTLERELQALRQQ--ESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEME 470
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1304-1524 |
5.96e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 5.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1304 ERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSK-QEQSLNMKEKDNETTKIVSEME 1382
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1383 QFKPKDSALLRiEIEMLGLSKRLQE--SHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCC 1460
Cdd:COG4942 101 AQKEELAELLR-ALYRLGRQPPLALllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348663 1461 LKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEiyEKEEQFNIKQISEVQEKVNE 1524
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE--AEELEALIARLEAEAAAAAE 241
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1406-1920 |
6.12e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.15 E-value: 6.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1406 QESHDEMKSVAKEKDDLQRLQEV------LQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKE 1479
Cdd:pfam12128 217 RLNRQQVEHWIRDIQAIAGIMKIrpeftkLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1480 TEIST----IQKQLEAINDKLQNKIQEIYEKEEQFNIKQisevQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQE 1555
Cdd:pfam12128 297 DQWKEkrdeLNGELSAADAAVAKDRSELEALEDQHGAFL----DADIETAAADQEQLPSWQSELENLEERLKALTGKHQD 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1556 SQEEIQIMI-KEKEEMKRVQEALQIERDqlkeNTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFEtqkln 1634
Cdd:pfam12128 373 VTAKYNRRRsKIKEQNNRDIAGIKDKLA----KIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLK----- 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1635 lENIETENIRLTQ--ILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETI 1712
Cdd:pfam12128 444 -SRLGELKLRLNQatATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSAL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1713 DKLRGIVSEKTDKL----SNMQKDLENSNAKLQEKIQELKANehqlitLKKDVNETQKKvsemeqlkkqikdQSLTLSKL 1788
Cdd:pfam12128 523 DELELQLFPQAGTLlhflRKEAPDWEQSIGKVISPELLHRTD------LDPEVWDGSVG-------------GELNLYGV 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1789 eieNLNLAQKLHENLEEMksvmkerdnlrrvEETLKLERDQLKESLQETKARDLEIQQELKTARM-LSKEHKETVDKLR- 1866
Cdd:pfam12128 584 ---KLDLKRIDVPEWAAS-------------EEELRERLDKAEEALQSAREKQAAAEEQLVQANGeLEKASREETFARTa 647
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1867 -EKISEKTIQISDIQKDLDKSKDE-----LQKKDRQNHQVKPEKRLLSDGQQHLTESLRE 1920
Cdd:pfam12128 648 lKNARLDLRRLFDEKQSEKDKKNKalaerKDSANERLNSLEAQLKQLDKKHQAWLEEQKE 707
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
991-1502 |
6.27e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.84 E-value: 6.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 991 DKKQDLEAKNTQTL-TADVKdneiieqqrkifSLIQEKNELQQMLES---VIAEKEQLKTDLKENIEMTIENQEELrllg 1066
Cdd:PRK11281 40 DVQAQLDALNKQKLlEAEDK------------LVQQDLEQTLALLDKidrQKEETEQLKQQLAQAPAKLRQAQAEL---- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1067 DELKKQQEIVAQE--KNHAIKK-EGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELK 1143
Cdd:PRK11281 104 EALKDDNDEETREtlSTLSLRQlESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1144 NKELTLEHMETERLELAQKLNEnyeevKSITKERKVLK---ELQKSFETERDHLRGYIREIEAtglqtkeelkiahiHLK 1220
Cdd:PRK11281 184 VGGKALRPSQRVLLQAEQALLN-----AQNDLQRKSLEgntQLQDLLQKQRDYLTARIQRLEH--------------QLQ 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1221 EHQETIDELRRSVSEKTA-QIINTQDLEKSHTKlqeeiPVLHEEQELlpNVKeVSEtqetmnelELLteQSTTkdsttla 1299
Cdd:PRK11281 245 LLQEAINSKRLTLSEKTVqEAQSQDEAARIQAN-----PLVAQELEI--NLQ-LSQ--------RLL--KATE------- 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1300 riemerlRLNEKFQESQEeikslTKER-DNL----KTIKEALEVKHDQLkehireTLAKIqesQSKQEQSLnmkekdnET 1374
Cdd:PRK11281 300 -------KLNTLTQQNLR-----VKNWlDRLtqseRNIKEQISVLKGSL------LLSRI---LYQQQQAL-------PS 351
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1375 TKIVSEMeqfkPKDSALLRIEIemlglsKRLQESHDEMKSVAKEKDDLQRLQEvlQSESDQLKENIKEIvakhLETEEEL 1454
Cdd:PRK11281 352 ADLIEGL----ADRIADLRLEQ------FEINQQRDALFQPDAYIDKLEAGHK--SEVTDEVRDALLQL----LDERREL 415
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 2217348663 1455 kvahcclkeQEETINELRVNLSEKET-EIStiQKQLEAINDKLQNKIQE 1502
Cdd:PRK11281 416 ---------LDQLNKQLNNQLNLAINlQLN--QQQLLSVSDSLQSTLTQ 453
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1497-1769 |
6.33e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 6.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1497 QNKIQEIYEKEEQFNIKQISEVQEKVNELKQfkeHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEA 1576
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKK---EEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1577 LQIERDQLKENTKEIVAKM-KESQEKEYQFLkmtavnetqekmceiehlkeqfetqkLNLENIETENIRLT---QILHEN 1652
Cdd:COG4942 95 LRAELEAQKEELAELLRALyRLGRQPPLALL--------------------------LSPEDFLDAVRRLQylkYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1653 LEEMRSVTKERDDLRSVEETLKVERDQLKENLretitrdlkiqeelriahmhlKEQQETIDKLRGIVSEKTDKLSNMQKD 1732
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALL---------------------AELEEERAALEALKAERQKLLARLEKE 207
|
250 260 270
....*....|....*....|....*....|....*..
gi 2217348663 1733 LENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVS 1769
Cdd:COG4942 208 LAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1699-2055 |
7.02e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 7.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1699 RIAHMHLKEQQETIDKLRGIvsektdklsnmqKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEmEQLKKqI 1778
Cdd:TIGR02169 146 DFISMSPVERRKIIDEIAGV------------AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRR-EREKA-E 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1779 KDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRveetlklERDQLKESLQETKARDLEIQQELKT-ARMLSKE 1857
Cdd:TIGR02169 212 RYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE-------ELEKLTEEISELEKRLEEIEQLLEElNKKIKDL 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1858 HKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDD 1937
Cdd:TIGR02169 285 GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1938 HYECLNRLSLDLEKEIEFQKELSMRVKANLSlpylQTKH-IEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESI 2016
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDYREKLE----KLKReINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
330 340 350
....*....|....*....|....*....|....*....
gi 2217348663 2017 NKFEmDFIDEVEKQKElliKIQHLQQDCDVPSRELRDLK 2055
Cdd:TIGR02169 441 EEKE-DKALEIKKQEW---KLEQLAADLSKYEQELYDLK 475
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1260-2392 |
7.61e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.98 E-value: 7.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1260 LHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLAR-IEMERLRLNEKFQESQEEIKSLTKERDNL-----KTIK 1333
Cdd:TIGR01612 514 LYKPDEVPSKNIIGFDIDQNIKAKLYKEIEAGLKESYELAKnWKKLIHEIKKELEEENEDSIHLEKEIKDLfdkylEIDD 593
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1334 EALEVkhDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEM---------EQFKPKDSALLRIEIEMLGLSK- 1403
Cdd:TIGR01612 594 EIIYI--NKLKLELKEKIKNISDKNEYIKKAIDLKKIIENNNAYIDELakispyqvpEHLKNKDKIYSTIKSELSKIYEd 671
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1404 RLQESHDEMKSVAKEKD--------DLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKvahcclKEQEETINELRVNL 1475
Cdd:TIGR01612 672 DIDALYNELSSIVKENAidntedkaKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKK------NELLDIIVEIKKHI 745
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1476 -SEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNI--KQISEVQEKVNELKQFkEHRKAKDSALQSIESKmlELTNR 1552
Cdd:TIGR01612 746 hGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKykSKISEIKNHYNDQINI-DNIKDEDAKQNYDKSK--EYIKT 822
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1553 LQESQEEIQIMIKEKEEMK---------------RVQEALQIERDQLKENTKEIVAKMKESQEKEYQflkmTAVNETQEK 1617
Cdd:TIGR01612 823 ISIKEDEIFKIINEMKFMKddflnkvdkfinfenNCKEKIDSEHEQFAELTNKIKAEISDDKLNDYE----KKFNDSKSL 898
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1618 MCEIEHLKEQfETQKLNLENIETENIRLTQILHENLEEMRSvtkerddlrsveetlkvERDQLKENLRETITRdlkiqee 1697
Cdd:TIGR01612 899 INEINKSIEE-EYQNINTLKKVDEYIKICENTKESIEKFHN-----------------KQNILKEILNKNIDT------- 953
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1698 lrIAHMHLKEQQETiDKLRGIVSEKTDKLSNMQKDL-----ENSNAKLQEKIQELKAN--EHQLITLKKDVNETQKKVSE 1770
Cdd:TIGR01612 954 --IKESNLIEKSYK-DKFDNTLIDKINELDKAFKDAslndyEAKNNELIKYFNDLKANlgKNKENMLYHQFDEKEKATND 1030
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1771 MEQlkkQIKDQSLTLSKLEIENLNLAQKLHENLEEM--KSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQEL 1848
Cdd:TIGR01612 1031 IEQ---KIEDANKNIPNIEIAIHTSIYNIIDEIEKEigKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDDFGKEENI 1107
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1849 KTARMLSKEhKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQNHQVKpEKRLLSDGQQHLTESLREKCSRIKEL 1928
Cdd:TIGR01612 1108 KYADEINKI-KDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVA-DKAISNDDPEEIEKKIENIVTKIDKK 1185
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1929 LKRYSEMDDHYECLNRLSLDlEKEIEFQKELSMRVKANLSLPYLQTKHIEKLFTANQRCSMEfhRIMKKLKYVLSYVTKI 2008
Cdd:TIGR01612 1186 KNIYDEIKKLLNEIAEIEKD-KTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAME--AYIEDLDEIKEKSPEI 1262
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2009 KEEQH-ESINKFEMDF--IDEVEKQKELLIKIQHLQQDCDVPSRELRdlklnqnmdlhieeILKDFS-ESEFPSIKTEFQ 2084
Cdd:TIGR01612 1263 ENEMGiEMDIKAEMETfnISHDDDKDHHIISKKHDENISDIREKSLK--------------IIEDFSeESDINDIKKELQ 1328
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2085 QVLSNRKEMTQFLEEWLNtrfdieklkngiqkendricQVNNFFN----NRIIAIMNESTEFEERSatisKEWEQDLKSL 2160
Cdd:TIGR01612 1329 KNLLDAQKHNSDINLYLN--------------------EIANIYNilklNKIKKIIDEVKEYTKEI----EENNKNIKDE 1384
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2161 KEKNEKLFK------NYQTLKTSLAS---GAQVNPTTQDNK--NPHVTSRATQLTTEKIRELENS-----LHEAKESAMH 2224
Cdd:TIGR01612 1385 LDKSEKLIKkikddiNLEECKSKIEStldDKDIDECIKKIKelKNHILSEESNIDTYFKNADENNenvllLFKNIEMADN 1464
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2225 KESKIIKMQKElEVTNDI---IAKLQAKVHESNKC-LEKTKETIQVLQDKVALgaKPYKEEIEDLKMKLVKIdlekmkna 2300
Cdd:TIGR01612 1465 KSQHILKIKKD-NATNDHdfnINELKEHIDKSKGCkDEADKNAKAIEKNKELF--EQYKKDVTELLNKYSAL-------- 1533
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2301 kEFEKEISATKATVEyqkEVIRLLREnlrrsqqAQDTSVISEHTDPQPSNKpltcgggsgivqntkaliLKSEHIRLEKE 2380
Cdd:TIGR01612 1534 -AIKNKFAKTKKDSE---IIIKEIKD-------AHKKFILEAEKSEQKIKE------------------IKKEKFRIEDD 1584
|
1210
....*....|..
gi 2217348663 2381 ISKLKQQNEQLI 2392
Cdd:TIGR01612 1585 AAKNDKSNKAAI 1596
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
694-898 |
9.68e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 9.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 694 EGKITDLQKELNKEVEENEALREEvillseLKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEI 773
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAE------LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 774 GKTKDDLATTQSNYKSTDQEF--QNFKtlhmDFEQKYKMVLEENERmNQEIVNLSKEAQKfdsSLGALKTELSYKTQELQ 851
Cdd:COG3883 89 GERARALYRSGGSVSYLDVLLgsESFS----DFLDRLSALSKIADA-DADLLEELKADKA---ELEAKKAELEAKLAELE 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2217348663 852 EKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEE 898
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
530-777 |
1.12e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.70 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 530 EKNDLDEFEALERKTKKDQE-NELSSKVELLREKEDQIKKLQEYIDSQKLENIKMDLSYSLESIEDpkqmkqtlfdaetv 608
Cdd:PRK05771 35 DLKEELSNERLRKLRSLLTKlSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEK-------------- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 609 aldakresaflrsenlELKEKMKELattyKQMENDIQLYQSQLEAKKKMQ---VDLEKELQSafneitKLTSLIDGKVPK 685
Cdd:PRK05771 101 ----------------EIKELEEEI----SELENEIKELEQEIERLEPWGnfdLDLSLLLGF------KYVSVFVGTVPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 686 DLLCNLELEGKIT--------------------DLQKELNKEVEENEALREEV-----------ILLSELKSLPSEVERL 734
Cdd:PRK05771 155 DKLEELKLESDVEnveyistdkgyvyvvvvvlkELSDEVEEELKKLGFERLELeeegtpselirEIKEELEEIEKERESL 234
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2217348663 735 RKEIQDKSEELHIITSEKDKLFSEVVHKESrvqgLLEEIGKTK 777
Cdd:PRK05771 235 LEELKELAKKYLEELLALYEYLEIELERAE----ALSKFLKTD 273
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1060-1211 |
1.20e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.55 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1060 EELRLLGDELKKQQEIVAQEKNHAIKKEGElsrtcdrlAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLK 1139
Cdd:PRK12704 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFE--------KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKE 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348663 1140 NELKNKELTLEHMETERLELAQKLNENYEEVKSITKE---RKVLKELQKSFETERDHlrgYIREIEAtglQTKEE 1211
Cdd:PRK12704 117 KELEQKQQELEKKEEELEELIEEQLQELERISGLTAEeakEILLEKVEEEARHEAAV---LIKEIEE---EAKEE 185
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
913-1584 |
1.33e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 913 QESLQIERDQLKSDIHDT-----VNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKM 987
Cdd:pfam12128 213 PPKSRLNRQQVEHWIRDIqaiagIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 988 VGIDK--KQDLEAKNTQTLTADVK------DNEIIEQQRKIFsliqekneLQQMLESVIAEKEQLktdlkENIEMTIENQ 1059
Cdd:pfam12128 293 RTLDDqwKEKRDELNGELSAADAAvakdrsELEALEDQHGAF--------LDADIETAAADQEQL-----PSWQSELENL 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1060 EELR--LLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEV-EEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINE-- 1134
Cdd:pfam12128 360 EERLkaLTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIrEARDRQLAVAEDDLQALESELREQLEAGKLEFNEee 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1135 --IENLKNELKNKELTLEHMETERLELAQK---LNENYEEVKSITKERKVLKELQKSFETERDhlrgyireieatglQTK 1209
Cdd:pfam12128 440 yrLKSRLGELKLRLNQATATPELLLQLENFderIERAREEQEAANAEVERLQSELRQARKRRD--------------QAS 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1210 EELKIAHIHLKEHQETIDELRRSVSEKTAQII-----NTQDLEKSHTKLQEeiPVLHEEQELLPNVKEVSETQETmnele 1284
Cdd:pfam12128 506 EALRQASRRLEERQSALDELELQLFPQAGTLLhflrkEAPDWEQSIGKVIS--PELLHRTDLDPEVWDGSVGGEL----- 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1285 llteqsttkdSTTLARIEMERLRLNEKFQESQEeiksLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQS 1364
Cdd:pfam12128 579 ----------NLYGVKLDLKRIDVPEWAASEEE----LRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFA 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1365 LN-MKEKDNETTKIVSEMEQFKPKDSAllrieiemlGLSKRLQESHDEMKSVAKEKDDLQR-LQEVLQSESDQLKENIKE 1442
Cdd:pfam12128 645 RTaLKNARLDLRRLFDEKQSEKDKKNK---------ALAERKDSANERLNSLEAQLKQLDKkHQAWLEEQKEQKREARTE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1443 IVAKHLETEEELKVAHCCLKEQEETINE-LRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQfnIKQISEVQEK 1521
Cdd:pfam12128 716 KQAYWQVVEGALDAQLALLKAAIAARRSgAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERK--IERIAVRRQE 793
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1522 VNELKQFKEH-----RKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQL 1584
Cdd:pfam12128 794 VLRYFDWYQEtwlqrRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSEN 861
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
494-926 |
1.54e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 494 ENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTkkdqeNELSSKVELLREKEDQIKKLQEYI 573
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAEL-----AELPERLEELEERLEELRELEEEL 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 574 DSQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEA 653
Cdd:COG4717 166 EELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 654 KKKMQVDLekeLQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLpsever 733
Cdd:COG4717 246 KEARLLLL---IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL------ 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 734 LRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLAtTQSNYKSTDQEFQNFK-TLHMDFEQKYKMvL 812
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ-LEELEQEIAALLAEAGvEDEEELRAALEQ-A 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 813 EENERMNQEIVNLSKEAQKFDSSLGALKTELSYKT--QELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTL--I 888
Cdd:COG4717 395 EEYQELKEELEELEEQLEELLGELEELLEALDEEEleEELEELEEELEELEEELEELREELAELEAELEQLEEDGELaeL 474
|
410 420 430
....*....|....*....|....*....|....*...
gi 2217348663 889 TEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSD 926
Cdd:COG4717 475 LQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1512-2307 |
2.14e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1512 IKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMikeKEEMKRVQEALQIERDQLKENTKEI 1591
Cdd:TIGR04523 29 NKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKIL---EQQIKDLNDKLKKNKDKINKLNSDL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1592 VAKMKESQEKEYQFLKmtavnetqeKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEE 1671
Cdd:TIGR04523 106 SKINSEIKNDKEQKNK---------LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELN 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1672 TLKVERDQLKENLRETITRDLKIQEELRIahmhLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANE 1751
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKLLKLELLLSN----LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1752 HQLITLK----KDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENL-EEMKSVMKERDNLRRVEET---- 1822
Cdd:TIGR04523 253 TQLNQLKdeqnKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWnKELKSELKNQEKKLEEIQNqisq 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1823 -------LKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDR 1895
Cdd:TIGR04523 333 nnkiisqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1896 QNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKELSMRVKANLSlpylqtk 1975
Cdd:TIGR04523 413 QIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE------- 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1976 hieklftanqrcsmefhRIMKKLKYVLSYVTKIKEEQHESINKFEmdfiDEVEKQKELLIKIQHLQQDCDVPSRELRDLK 2055
Cdd:TIGR04523 486 -----------------QKQKELKSKEKELKKLNEEKKELEEKVK----DLTKKISSLKEKIEKLESEKKEKESKISDLE 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2056 lnqnmdlhiEEILKDFSESEFPSIKTEFQQVLSNRKEMTQFLEEWLNTRFDIEKLKNGIQKENDRIcqvnnffnnriiai 2135
Cdd:TIGR04523 545 ---------DELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL-------------- 601
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2136 mneSTEFEERSATISkEWEQDLKSLKEKNEKLFKNYQTLKTSLasgaqvnpttqdnknphvtsratqlttEKIRELENSL 2215
Cdd:TIGR04523 602 ---IKEIEEKEKKIS-SLEKELEKAKKENEKLSSIIKNIKSKK---------------------------NKLKQEVKQI 650
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2216 HEAKESAMHKESKIIKMQKELEVTNDIIAKLQAKvHESNKCLEKTKETIQVLQDKVALGAKPYKEEIEDLKMKLVKIDLE 2295
Cdd:TIGR04523 651 KETIKEIRNKWPEIIKKIKESKTKIDDIIELMKD-WLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKE 729
|
810
....*....|..
gi 2217348663 2296 KMKNAKEFEKEI 2307
Cdd:TIGR04523 730 LENIIKNFNKKF 741
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
473-1536 |
2.27e-05 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 50.22 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 473 SNTLDTLSEIEWNPATKLLNQE---------NIESELNSLRADYDNLVLDYEQ--------LRTEKEEMELKLKEKNDLD 535
Cdd:PTZ00440 405 YTNIISLSEHTLKAAEDVLKENsqkiadyalYSNLEIIEIKKKYDEKINELKKsinqlktlISIMKSFYDLIISEKDSMD 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 536 EFEALERKTKKDQE--NELSSKVELLREKE----DQIKKLQEYidSQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVA 609
Cdd:PTZ00440 485 SKEKKESSDSNYQEkvDELLQIINSIKEKNnivnNNFKNIEDY--YITIEGLKNEIEGLIELIKYYLQSIETLIKDEKLK 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 610 LDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNeitKLTSLIDGKVPKDLLc 689
Cdd:PTZ00440 563 RSMKNDIKNKIKYIEENVDHIKDIISLNDEIDNIIQQIEELINEALFNKEKFINEKNDLQE---KVKYILNKFYKGDLQ- 638
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 690 nlELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQD------KSEELHIITSEKDKLFSEVVHKE 763
Cdd:PTZ00440 639 --ELLDELSHFLDDHKYLYHEAKSKEDLQTLLNTSKNEYEKLEFMKSDNIDniiknlKKELQNLLSLKENIIKKQLNNIE 716
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 764 SRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTEL 843
Cdd:PTZ00440 717 QDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLYENDKDLPDGKNTYEEFLQYKDTILNKENKI 796
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 844 SYKTQELQEKTREVQERLNEMEQLKEQLENRdstlqtVEREKTLITEKLQQTLEEVKTLTQEKDDlKQLQESLQIERDQL 923
Cdd:PTZ00440 797 SNDINILKENKKNNQDLLNSYNILIQKLEAH------TEKNDEELKQLLQKFPTEDENLNLKELE-KEFNENNQIVDNII 869
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 924 KsDIhDTVNMNIDTQEQLRNALESLKQHQETINTLKskiseevsrnlhmeENTGETKDEFQQKMVGIDKKQDLEAKNTQT 1003
Cdd:PTZ00440 870 K-DI-ENMNKNINIIKTLNIAINRSNSNKQLVEHLL--------------NNKIDLKNKLEQHMKIINTDNIIQKNEKLN 933
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1004 LTADV-KDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDEL------------- 1069
Cdd:PTZ00440 934 LLNNLnKEKEKIEKQLSDTKINNLKMQIEKTLEYYDKSKENINGNDGTHLEKLDKEKDEWEHFKSEIdklnvnynilnkk 1013
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1070 ------KKQQEIVAQEKNHAIKKEGELSRTCDR----LAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKI------- 1132
Cdd:PTZ00440 1014 iddlikKQHDDIIELIDKLIKEKGKEIEEKVDQyislLEKMKTKLSSFHFNIDIKKYKNPKIKEEIKLLEEKVeallkki 1093
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1133 ----NEIENLKNEL--------KNKELTLEHMETERLELA---QKLNENYEEVKSITKERKVLKELQksfETERDHLRGY 1197
Cdd:PTZ00440 1094 denkNKLIEIKNKShehvvnadKEKNKQTEHYNKKKKSLEkiyKQMEKTLKELENMNLEDITLNEVN---EIEIEYERIL 1170
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1198 IREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINT----------QDLEKSHTKLQEEIPVLHEEQELL 1267
Cdd:PTZ00440 1171 IDHIVEQINNEAKKSKTIMEEIESYKKDIDQVKKNMSKERNDHLTTfeynayydkaTASYENIEELTTEAKGLKGEANRS 1250
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1268 PNVKEVSETQETMNELELLTEQSTTKDSTTLARIE-MERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEH 1346
Cdd:PTZ00440 1251 TNVDELKEIKLQVFSYLQQVIKENNKMENALHEIKnMYEFLISIDSEKILKEILNSTKKAEEFSNDAKKELEKTDNLIKQ 1330
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1347 IRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSAllrIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQ 1426
Cdd:PTZ00440 1331 VEAKIEQAKEHKNKIYGSLEDKQIDDEIKKIEQIKEEISNKRKE---INKYLSNIKSNKEKCDLHVRNASRGKDKIDFLN 1407
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1427 EVLQSESDQLKE----NIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSE--KETEISTIQKQLEAINDKLQNKI 1500
Cdd:PTZ00440 1408 KHEAIEPSNSKEvniiKITDNINKCKQYSNEAMETENKADENNDSIIKYEKEITNilNNSSILGKKTKLEKKKKEATNIM 1487
|
1130 1140 1150
....*....|....*....|....*....|....*..
gi 2217348663 1501 QEIyeKEEQFNIKQISEV-QEKVNELKQFKEHRKAKD 1536
Cdd:PTZ00440 1488 DDI--NGEHSIIKTKLTKsSEKLNQLNEQPNIKREGD 1522
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
336-1202 |
2.38e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 336 NEVSTDEALLKRYRKEIMDLKKQLEEVSlETRAQAMEKDQLAQLLEEKDLLQKVQNEKIENLTRMLVTSSSLTL------ 409
Cdd:TIGR00606 231 AQLESSREIVKSYENELDPLKNRLKEIE-HNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLndlyhn 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 410 -QQELKAKRKRRVTwCLGKINKMkNSNYADQFNIPTNITTKTHKLSINLLREIDESVCSESDVFSNTL---------DTL 479
Cdd:TIGR00606 310 hQRTVREKERELVD-CQRELEKL-NKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATrleldgferGPF 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 480 SEIEWNPATKLL--NQENIESELNSLRADY-DNLVLDYEQ---LRTEKEEMELKLKEKNDLDEFEALERKTKKDQENELS 553
Cdd:TIGR00606 388 SERQIKNFHTLVieRQEDEAKTAAQLCADLqSKERLKQEQadeIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 554 SKVELLREKEDQIKKLQEyiDSQKLEniKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKEL 633
Cdd:TIGR00606 468 GSSDRILELDQELRKAER--ELSKAE--KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 634 ATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEA 713
Cdd:TIGR00606 544 KMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSS 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 714 LREEVILLSELKSLPSEVERLRKEIQDKSEELHII---TSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLattqsnykst 790
Cdd:TIGR00606 624 YEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLagaTAVYSQFITQLTDENQSCCPVCQRVFQTEAEL---------- 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 791 dQEFQNfktlhmDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQ 870
Cdd:TIGR00606 694 -QEFIS------DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 871 LENRDSTLQTVEREKTL---------ITEKLQQTLEEV-KTLTQEKDDLKQLQESLQI----ERDQLKSDIHDTVNMNID 936
Cdd:TIGR00606 767 IEEQETLLGTIMPEEESakvcltdvtIMERFQMELKDVeRKIAQQAAKLQGSDLDRTVqqvnQEKQEKQHELDTVVSKIE 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 937 TQEQLRNALESLKQH-QETINTLKS---KISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNE 1012
Cdd:TIGR00606 847 LNRKLIQDQQEQIQHlKSKTNELKSeklQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1013 IIEQQRkifsliQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEelrllgDELKKQQEivaqekNHAIKKEGELSR 1092
Cdd:TIGR00606 927 ELISSK------ETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGK------DDYLKQKE------TELNTVNAQLEE 988
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1093 TCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKiNEIENLKNELKNKELTLEHMETerLELAQKLNENYEEVKS 1172
Cdd:TIGR00606 989 CEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRE-NELKEVEEELKQHLKEMGQMQV--LQMKQEHQKLEENIDL 1065
|
890 900 910
....*....|....*....|....*....|
gi 2217348663 1173 ITKERKVLKELQKSFETERDHLRGYIREIE 1202
Cdd:TIGR00606 1066 IKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1414-1586 |
2.71e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1414 SVAKEKDDLQRLQEvLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAIN 1493
Cdd:COG1579 1 AMPEDLRALLDLQE-LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1494 DKLQ----NKIQEIYEKEEQFNIKQISEVQEkvnELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQimiKEKEE 1569
Cdd:COG1579 80 EQLGnvrnNKEYEALQKEIESLKRRISDLED---EILELMERIEELEEELAELEAELAELEAELEEKKAELD---EELAE 153
|
170
....*....|....*..
gi 2217348663 1570 MKRVQEALQIERDQLKE 1586
Cdd:COG1579 154 LEAELEELEAEREELAA 170
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1495-2089 |
2.73e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1495 KLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQ 1574
Cdd:pfam05483 78 RLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLC 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1575 EALQIERDQLKENTKEIvakmkESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENirltqilHENLE 1654
Cdd:pfam05483 158 NLLKETCARSAEKTKKY-----EYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKED-------HEKIQ 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1655 EMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLkiqEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSnmqKDLE 1734
Cdd:pfam05483 226 HLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLL---EESRDKANQLEEKTKLQDENLKELIEKKDHLT---KELE 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1735 NSNAKLQEKIQELKANEHQL-ITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHenleemksvmKER 1813
Cdd:pfam05483 300 DIKMSLQRSMSTQKALEEDLqIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLR----------TEQ 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1814 DNLRRVEETLKLERDQLKEslqetKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDE---- 1889
Cdd:pfam05483 370 QRLEKNEDQLKIITMELQK-----KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQElifl 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1890 LQKKDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHyecLNRLSLDLEKEIEFQKELSMRVKA---- 1965
Cdd:pfam05483 445 LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAH---CDKLLLENKELTQEASDMTLELKKhqed 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1966 ---NLSLPYLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEMDFIDEVEKQKELLIKIQHLQQ 2042
Cdd:pfam05483 522 iinCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKK 601
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348663 2043 DCDVPSRELRDLKLN----------QNMDLHIEEILKDFSESEFPSIKTEFQQVLSN 2089
Cdd:pfam05483 602 QIENKNKNIEELHQEnkalkkkgsaENKQLNAYEIKVNKLELELASAKQKFEEIIDN 658
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
838-1079 |
3.06e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 3.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 838 ALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEkddLKQLQESLQ 917
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE---IAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 918 IERDQLKsdihdtvnmnidtqEQLRnALESLKQHQETINTLKSKISEEVSRNLHMeentgetkdefQQKMVGIDKKQDLE 997
Cdd:COG4942 101 AQKEELA--------------ELLR-ALYRLGRQPPLALLLSPEDFLDAVRRLQY-----------LKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 998 AKNTQTLTADVKDnEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKEN-------IEMTIENQEELRLLGDELK 1070
Cdd:COG4942 155 LRADLAELAALRA-ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKElaelaaeLAELQQEAEELEALIARLE 233
|
....*....
gi 2217348663 1071 KQQEIVAQE 1079
Cdd:COG4942 234 AEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1403-1843 |
3.20e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1403 KRLQESHDEMKSVAKEKDDLQRL------------QEVLQSESDQLKENIKEIVAKHLETEEELKvahcclkEQEETINE 1470
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLraalrlwfaqrrLELLEAELEELRAELARLEAELERLEARLD-------ALREELDE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1471 LRVNLSEKETE-ISTIQKQLEAINDKLQNKIQ--EIYEKE-EQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKM 1546
Cdd:COG4913 328 LEAQIRGNGGDrLEQLEREIERLERELEERERrrARLEALlAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1547 LELTNRLQESQEEIQIMIKEKEEMKRVQ----EALQIERDQLKENTKEIVAKM---------KESQEK------------ 1601
Cdd:COG4913 408 AEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALAEALGLDEAELpfvgelievRPEEERwrgaiervlggf 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1602 --------EY--QFLKmtAVNETqekmceieHLKEQFETQKLNLENIETENIR--------------------LTQILH- 1650
Cdd:COG4913 488 altllvppEHyaAALR--WVNRL--------HLRGRLVYERVRTGLPDPERPRldpdslagkldfkphpfrawLEAELGr 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1651 -------ENLEEM----RSVTKE--------------RDDLRSV----------EETLKVERDQLKENLRE------TIT 1689
Cdd:COG4913 558 rfdyvcvDSPEELrrhpRAITRAgqvkgngtrhekddRRRIRSRyvlgfdnrakLAALEAELAELEEELAEaeerleALE 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1690 RDLKIQEELRIAHMHLKEQQETIDKLRGIVSEkTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVS 1769
Cdd:COG4913 638 AELDALQERREALQRLAEYSWDEIDVASAERE-IAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIG 716
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348663 1770 EMEQLKKQIKDQ-SLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLqETKARDLE 1843
Cdd:COG4913 717 RLEKELEQAEEElDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL-NRAEEELE 790
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
619-1135 |
3.27e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 619 LRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEG--- 695
Cdd:TIGR04523 223 LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlnn 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 696 -KITDLQKELNKEVEENEalREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIG 774
Cdd:TIGR04523 303 qKEQDWNKELKSELKNQE--KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 775 KTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKT 854
Cdd:TIGR04523 381 SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLD 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 855 REVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMN 934
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 935 IDTQEQLRNALESLKQHQ--ETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNE 1012
Cdd:TIGR04523 541 SDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1013 IIEQQRKifSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMT---IENQEELRLLGDELKKQQEIVAQEKNHAIKKEGE 1089
Cdd:TIGR04523 621 KAKKENE--KLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWpeiIKKIKESKTKIDDIIELMKDWLKELSLHYKKYIT 698
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 2217348663 1090 LSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEI 1135
Cdd:TIGR04523 699 RMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKFDDA 744
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1161-1663 |
3.69e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1161 QKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEAtgLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQI 1240
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEE--LEAELEELREELEKLEKLLQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1241 intQDLEKSHTKLQEEIPVLHEEQELLPNVKEvsETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIK 1320
Cdd:COG4717 142 ---AELPERLEELEERLEELRELEEELEELEA--ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1321 SLTKERDNLKTIKEALEVKHdqlkehireTLAKIQESQSKQEQSLNmkekdneTTKIVSEMEQFKPKDSALLRIEIEMLG 1400
Cdd:COG4717 217 EAQEELEELEEELEQLENEL---------EAAALEERLKEARLLLL-------IAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1401 LSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHccLKEQEETINELRVNLSEKET 1480
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE--LLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1481 EISTIQKQleaindKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEI 1560
Cdd:COG4717 359 LEEELQLE------ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1561 QImikekEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEyqflkmtavnetqekmcEIEHLKEQFETQKLNLENIET 1640
Cdd:COG4717 433 EL-----EELEEELEELEEELEELREELAELEAELEQLEEDG-----------------ELAELLQELEELKAELRELAE 490
|
490 500
....*....|....*....|...
gi 2217348663 1641 ENIRLtQILHENLEEMRSVTKER 1663
Cdd:COG4717 491 EWAAL-KLALELLEEAREEYREE 512
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1652-1913 |
3.85e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.31 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1652 NLEEMRSVTKERDDLRSVEETLkverdqlkENLRETITRDLKIQEELRIAHMHLKEqqETIDKLrgivsEKTDKLSNMQK 1731
Cdd:COG5022 798 KLQPLLSLLGSRKEYRSYLACI--------IKLQKTIKREKKLRETEEVEFSLKAE--VLIQKF-----GRSLKAKKRFS 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1732 DLENSNAKLQEKiQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMK---- 1807
Cdd:COG5022 863 LLKKETIYLQSA-QRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLnnid 941
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1808 ----------------SVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREkISE 1871
Cdd:COG5022 942 leegpsieyvklpelnKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQ-LKE 1020
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2217348663 1872 KTIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDGQQH 1913
Cdd:COG5022 1021 LPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQL 1062
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1298-1454 |
3.86e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 3.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1298 LARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNettkI 1377
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEA----L 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1378 VSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKS-VAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEEL 1454
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAeLAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1000-1363 |
4.43e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 4.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1000 NTQTLTADVKDNEI--IEQQRKIFSLIQEKNELQQM-LESVIAEKEQLKTDLKENIEMtiENQEELRllGDELKKQQEIV 1076
Cdd:pfam17380 261 NGQTMTENEFLNQLlhIVQHQKAVSERQQQEKFEKMeQERLRQEKEEKAREVERRRKL--EEAEKAR--QAEMDRQAAIY 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1077 AQEKNHAIKKEGELSRTcdrlaEVEEKLKEKSQQLqekqqqllnvQEEMSEMQKKINEIENLKNELKNKELTLEhmetER 1156
Cdd:pfam17380 337 AEQERMAMERERELERI-----RQEERKRELERIR----------QEEIAMEISRMRELERLQMERQQKNERVR----QE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1157 LELAQKLNENYEEVKSITKERKVLKELQKSFETErdhlrgyIREIEATGLQTKEELKIAHIHLK--EHQETIDELRRSVS 1234
Cdd:pfam17380 398 LEAARKVKILEEERQRKIQQQKVEMEQIRAEQEE-------ARQREVRRLEEERAREMERVRLEeqERQQQVERLRQQEE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1235 EKTAQIINtQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQE 1314
Cdd:pfam17380 471 ERKRKKLE-LEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 2217348663 1315 S----QEEIKSLTKERDNLKTIkealevkhdqlkEHIRETLAKIQESQSKQEQ 1363
Cdd:pfam17380 550 ErrriQEQMRKATEERSRLEAM------------EREREMMRQIVESEKARAE 590
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
848-1443 |
4.48e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 4.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 848 QELQEKTREVQERLNEMEQLKEQLEnrdstLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDI 927
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALR-----LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 928 hdtvnMNIDTQ--EQLRNALESLKQHQETINTlKSKISEEVSRNLHMEENtgETKDEFQQKMVGI----DKKQDLEAKNT 1001
Cdd:COG4913 333 -----RGNGGDrlEQLEREIERLERELEERER-RRARLEALLAALGLPLP--ASAEEFAALRAEAaallEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1002 QTLTAdvKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTienQEELRLLGDELkkqqEIVAQEKN 1081
Cdd:COG4913 405 EALAE--AEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLD---EAELPFVGELI----EVRPEEER 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1082 --HAIkkEGELS--RTC-----DRLAEV-----EEKLKEKsqqlqekqqqllnVQ-EEMSEMQKKINEIENLKNELKNKE 1146
Cdd:COG4913 476 wrGAI--ERVLGgfALTllvppEHYAAAlrwvnRLHLRGR-------------LVyERVRTGLPDPERPRLDPDSLAGKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1147 LTLEHMETERL--ELAQKLN----ENYEEV----KSITKERKVlkelqKSFETERDH-LRGYIREIEATGLQTKEelKIA 1215
Cdd:COG4913 541 DFKPHPFRAWLeaELGRRFDyvcvDSPEELrrhpRAITRAGQV-----KGNGTRHEKdDRRRIRSRYVLGFDNRA--KLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1216 HIhlkehQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSET-QETMNELELLteqstTKD 1294
Cdd:COG4913 614 AL-----EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREiAELEAELERL-----DAS 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1295 STTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLK------------------------EHIRET 1350
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdrleaaedlarlelralleerfaaALGDAV 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1351 LAKIQESQSKQEQSLNmKEKDNETTKIVSEMEQFK---PKDSALLRIEIEMLG----LSKRLQESH-----DEMKSVAKE 1418
Cdd:COG4913 764 ERELRENLEERIDALR-ARLNRAEEELERAMRAFNrewPAETADLDADLESLPeylaLLDRLEEDGlpeyeERFKELLNE 842
|
650 660
....*....|....*....|....*..
gi 2217348663 1419 --KDDLQRLQEVLQSESDQLKENIKEI 1443
Cdd:COG4913 843 nsIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1650-2418 |
5.05e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1650 HENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNM 1729
Cdd:pfam02463 155 RLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1730 QKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKK--VSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMK 1807
Cdd:pfam02463 235 NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKenKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1808 SVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSK 1887
Cdd:pfam02463 315 KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1888 DELQKKDRQNHQVKPEKRLLSDgQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKELSMRVKANL 1967
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELARQ-LEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDL 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1968 SLPYLQTKHIEKLFTANQRcSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEMDFIDEVEKQKELLIKIQHLQQDCDVP 2047
Cdd:pfam02463 474 LKETQLVKLQEQLELLLSR-QKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2048 SRELRDLKLNQNMDLHIEEILKDFSESEFPSIKTEFQQVLSNRKemtqflEEWLNTRFDIEKLKNGIQKENDRICQVNNF 2127
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAV------LEIDPILNLAQLDKATLEADEDDKRAKVVE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2128 FNNRIIAIMnESTEFEERSATISKEWEQDLKSLKEKNEKLFKNYQTLKTSLASGAQVNPTTQDNKNPHVTSRATQLTTEK 2207
Cdd:pfam02463 627 GILKDTELT-KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2208 IRELENSLHEAKESamhKESKIIKMQKELEVTNDIIAKLQAKVHESNKCLEKTK-ETIQVLQDKVALGAKPYKEEIEDLK 2286
Cdd:pfam02463 706 QREKEELKKLKLEA---EELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRlKKEEKEEEKSELSLKEKELAEEREK 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2287 MKLVKIDLEKMKNAKEFEKEISATKATVEYQKEVIRLLRENLRRSQQAQDTSVISEHTDPQPSNKpltcggGSGIVQNTK 2366
Cdd:pfam02463 783 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK------LEKLAEEEL 856
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 2217348663 2367 ALILKSEHIRLEKEISKLKQQNEQLIKQKNELLSNNQHLSNEVKTWKERTLK 2418
Cdd:pfam02463 857 ERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 908
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
529-948 |
5.36e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 5.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 529 KEKNDLDEFEALERKTKkdqenELSSKVELLREKEDQIKKLQEYIdsQKLENIKMDLSYSLESIEDPKQMKQtlfdaetv 608
Cdd:COG4717 65 KPELNLKELKELEEELK-----EAEEKEEEYAELQEELEELEEEL--EELEAELEELREELEKLEKLLQLLP-------- 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 609 aldakresafLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEkELQSAFNEITKLTSLIDGKVPKDLL 688
Cdd:COG4717 130 ----------LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLATEEELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 689 CNLE-LEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEE--LHIITSEKDKLFSEVVH---- 761
Cdd:COG4717 199 EELEeLQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaaLLALLGLGGSLLSLILTiagv 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 762 -----------------KESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVN 824
Cdd:COG4717 279 lflvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 825 LSKEAQ------KFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTL--ITEKLQQTL 896
Cdd:COG4717 359 LEEELQleeleqEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEeeLEEELEELE 438
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 2217348663 897 EEVKTLTQEKDDLKQLQESLQIERDQLKSDihDTVNMNIDTQEQLRNALESL 948
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQLEED--GELAELLQELEELKAELREL 488
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
855-1186 |
5.91e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 5.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 855 REVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQT-LEEVKTLTQEkddlkqlQESLQIERDQLKSDIHdtvnm 933
Cdd:pfam17380 287 RQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAeMDRQAAIYAE-------QERMAMERERELERIR----- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 934 nidtQEQLRNALESLKQHQetintlkskISEEVSRNLHMEentgETKDEFQQKMVGIdkKQDLEAKNTQTLTADVKDNEI 1013
Cdd:pfam17380 355 ----QEERKRELERIRQEE---------IAMEISRMRELE----RLQMERQQKNERV--RQELEAARKVKILEEERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1014 IEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEElRLLGDELKKQQEIVAQEKNHAIKKEGELSRT 1093
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVE-RLRQQEEERKRKKLELEKEKRDRKRAEEQRR 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1094 cdrlAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERL-ELAQKLNENYEEVKS 1172
Cdd:pfam17380 495 ----KILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIqEQMRKATEERSRLEA 570
|
330
....*....|....
gi 2217348663 1173 ITKERKVLKELQKS 1186
Cdd:pfam17380 571 MEREREMMRQIVES 584
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
526-1937 |
6.00e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 6.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 526 LKLKEKNDLDEFEALERKTKKDQENELSSKVE------LLREKEDQIKKLQEYIDSQK--LENIKMDLS-YSLESIEDPK 596
Cdd:TIGR01612 500 MRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDqnikakLYKEIEAGLKESYELAKNWKklIHEIKKELEeENEDSIHLEK 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 597 QMKQtLFDAETVALDakrESAFLRSENLELKEKMKELATTYKQMENDIQLyQSQLEAKKKMQVDLEKELQSAFNEITKLT 676
Cdd:TIGR01612 580 EIKD-LFDKYLEIDD---EIIYINKLKLELKEKIKNISDKNEYIKKAIDL-KKIIENNNAYIDELAKISPYQVPEHLKNK 654
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 677 SLIDGKVPKDLlcNLELEGKITDLQKELNKEVEENEAlrEEVILLSELKSLPSEVERLRKEIQDKSEE-----LHIITSE 751
Cdd:TIGR01612 655 DKIYSTIKSEL--SKIYEDDIDALYNELSSIVKENAI--DNTEDKAKLDDLKSKIDKEYDKIQNMETAtvelhLSNIENK 730
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 752 KDKLFSEVVHKESRVQGLL-EEIGKTKDDLATTQSNYKSTDQEFQNFKtlhmDFEQKYKMVLEE-----NERMNQEIVNL 825
Cdd:TIGR01612 731 KNELLDIIVEIKKHIHGEInKDLNKILEDFKNKEKELSNKINDYAKEK----DELNKYKSKISEiknhyNDQINIDNIKD 806
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 826 SKEAQKFDSSLGALKTelsyktqeLQEKTREVQERLNEMEQLKEQLENRDSTLQTVERE-KTLITEKLQQTLEEVKTLTQ 904
Cdd:TIGR01612 807 EDAKQNYDKSKEYIKT--------ISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNcKEKIDSEHEQFAELTNKIKA 878
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 905 EKDDlKQLQESLQIERDQlKSDIHDTVN------MNIDTQEQLRNALESLKQHQETINTLKSK---ISEEVSRNLHMEEN 975
Cdd:TIGR01612 879 EISD-DKLNDYEKKFNDS-KSLINEINKsieeeyQNINTLKKVDEYIKICENTKESIEKFHNKqniLKEILNKNIDTIKE 956
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 976 TGETKDEFQQKMVG--IDKKQDLEAKNTQTLTAD--VKDNEIIEQ---------QRKIFSLIQEKNELQQMLESVIAEKE 1042
Cdd:TIGR01612 957 SNLIEKSYKDKFDNtlIDKINELDKAFKDASLNDyeAKNNELIKYfndlkanlgKNKENMLYHQFDEKEKATNDIEQKIE 1036
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1043 QLKTDLKeNIEMTIENQeeLRLLGDELKKQQEIVAQEKNHAIKKEGELSRTcdRLAEVEEKLK----------------- 1105
Cdd:TIGR01612 1037 DANKNIP-NIEIAIHTS--IYNIIDEIEKEIGKNIELLNKEILEEAEINIT--NFNEIKEKLKhynfddfgkeenikyad 1111
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1106 EKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEH-----METERLELAQKLNEN-----------YEE 1169
Cdd:TIGR01612 1112 EINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDvadkaISNDDPEEIEKKIENivtkidkkkniYDE 1191
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1170 VKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIH----LKEHQETIDELRRSVSEKTAQIINTQD 1245
Cdd:TIGR01612 1192 IKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHmikaMEAYIEDLDEIKEKSPEIENEMGIEMD 1271
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1246 LEK-------SHTKLQEEIPVLHEEQELLPNVKE-------------------------VSETQETMNELEL-LTEQSTT 1292
Cdd:TIGR01612 1272 IKAemetfniSHDDDKDHHIISKKHDENISDIREkslkiiedfseesdindikkelqknLLDAQKHNSDINLyLNEIANI 1351
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1293 KDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDN----LKTIKEALEVKHDQLK-------EHIRETLAKIQESQS-- 1359
Cdd:TIGR01612 1352 YNILKLNKIKKIIDEVKEYTKEIEENNKNIKDELDKseklIKKIKDDINLEECKSKiestlddKDIDECIKKIKELKNhi 1431
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1360 -KQEQSL-----NMKEKDNETTKIVSEMEQFKPKDSALLRIEI-----EMLGLSKRLQESHDEMKSVAKEKDDLQRLQEV 1428
Cdd:TIGR01612 1432 lSEESNIdtyfkNADENNENVLLLFKNIEMADNKSQHILKIKKdnatnDHDFNINELKEHIDKSKGCKDEADKNAKAIEK 1511
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1429 LQSESDQLKENIKEIVAKHLETEEELKVAHC------CLKEQEETINELRVNLSEKETEISTIQKQLEAI------NDKL 1496
Cdd:TIGR01612 1512 NKELFEQYKKDVTELLNKYSALAIKNKFAKTkkdseiIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIeddaakNDKS 1591
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1497 QNKIQEIYEKEEQFNIK--QISEVQEKVNELKQFKEHRKAKDSALqSIESKMLELTNR-------------LQESQEEIQ 1561
Cdd:TIGR01612 1592 NKAAIDIQLSLENFENKflKISDIKKKINDCLKETESIEKKISSF-SIDSQDTELKENgdnlnslqeflesLKDQKKNIE 1670
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1562 IMIKEKEEMKRVQEALQIERDQLKENTK-EIVAKMKESQEKEYQflKMTAVNETQEKMceIEHLKEQFETQKLN----LE 1636
Cdd:TIGR01612 1671 DKKKELDELDSEIEKIEIDVDQHKKNYEiGIIEKIKEIAIANKE--EIESIKELIEPT--IENLISSFNTNDLEgidpNE 1746
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1637 NIETENIRLTQILHENLEE-------MRSVTKERDDLRSVEETLKVERDQLKENLR-----ETITRDLKIQEELRIAHmH 1704
Cdd:TIGR01612 1747 KLEEYNTEIGDIYEEFIELyniiagcLETVSKEPITYDEIKNTRINAQNEFLKIIEiekksKSYLDDIEAKEFDRIIN-H 1825
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1705 LKEQQETI-DKLRGIVSEKTDKLSNMQKDLENSNAKLQEK-----IQELKANEHQLITLK--KDVNETQKKVSEMEQLKK 1776
Cdd:TIGR01612 1826 FKKKLDHVnDKFTKEYSKINEGFDDISKSIENVKNSTDENllfdiLNKTKDAYAGIIGKKyySYKDEAEKIFINISKLAN 1905
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1777 QIKDQSLTLSKLEI-ENLNLA--------------------------QKLHENLEEMKSVMKERDNLRRVEE-TLKL--- 1825
Cdd:TIGR01612 1906 SINIQIQNNSGIDLfDNINIAilssldsekedtlkfipspekepeiyTKIRDSYDTLLDIFKKSQDLHKKEQdTLNIife 1985
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1826 ---------ERDQLKESLQETKARDLEIQQELKTARMLSKE---------------HKETVDKLREKIS----EK----- 1872
Cdd:TIGR01612 1986 nqqlyekiqASNELKDTLSDLKYKKEKILNDVKLLLHKFDElnklscdsqnydtilELSKQDKIKEKIDnyekEKekfgi 2065
|
1610 1620 1630 1640 1650 1660 1670
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348663 1873 -------TIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDD 1937
Cdd:TIGR01612 2066 dfdvkamEEKFDNDIKDIEKFENNYKHSEKDNHDFSEEKDNIIQSKKKLKELTEAFNTEIKIIEDKIIEKND 2137
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1645-2339 |
6.40e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 6.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1645 LTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTD 1724
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1725 KLSNMQKDLENSNA-------KLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQsltLSKLEIENLNLAQ 1797
Cdd:TIGR02168 310 RLANLERQLEELEAqleelesKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR---LEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1798 KLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEiqQELKTARMLSKEHKETVDKLREKISEKTIQIS 1877
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1878 DIQKDLDKSKDELQKKDRQNHQVKPEKRLLSDGQQHLTESLREkcsrIKELLKRYSEMDDHYECLNRLsldlekeIEFQK 1957
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG----VKALLKNQSGLSGILGVLSEL-------ISVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1958 ELSMRVKANL--SLPYLQTKHIEKLFTANQrcSMEFHRIMKKLKYVLS-----YVTKIKEEQHESINKFEMDFIDEVEKQ 2030
Cdd:TIGR02168 534 GYEAAIEAALggRLQAVVVENLNAAKKAIA--FLKQNELGRVTFLPLDsikgtEIQGNDREILKNIEGFLGVAKDLVKFD 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2031 KELLIKIQHLqqdcdvpsreLRDLKLNQNMDLHIEeILKDFSESEfpSIKTEFQQVLSNRKEMTQFLEEW----LNTRFD 2106
Cdd:TIGR02168 612 PKLRKALSYL----------LGGVLVVDDLDNALE-LAKKLRPGY--RIVTLDGDLVRPGGVITGGSAKTnssiLERRRE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2107 IEKLKNGIQKENDRICQVNNffnnRIIAIMNESTEFEERSATISKEWEQDLKSLKEknekLFKNYQTLKTSLASGAQVNP 2186
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEK----ALAELRKELEELEEELEQLRKELEELSRQISA----LRKDLARLEAEVEQLEERIA 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2187 TTQDNKNPHVTSRATQLttEKIRELENSLHEAKESAMHKESKIIKMQKELEVTNDIIAKLQAKVHESNKCLEKTKETIQV 2266
Cdd:TIGR02168 751 QLSKELTELEAEIEELE--ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348663 2267 LQDKVALGAKPY---KEEIEDLKMKLVKIDLEkMKNAKEFEKEISATKATVEYQKEVIRLLRENLRRSQQAQDTSV 2339
Cdd:TIGR02168 829 LERRIAATERRLedlEEQIEELSEDIESLAAE-IEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
709-1191 |
7.34e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 7.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 709 EENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLfsevvHKESRVQGLLEEIGKTKDDLATTQSNYK 788
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKL-----EKLLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 789 STDQEFQNFKTLHmdfeqkykmvleenermnQEIVNLSKEAQKFDSSLGALKTELSYKTQElqektrEVQERLNEMEQLK 868
Cdd:COG4717 150 ELEERLEELRELE------------------EELEELEAELAELQEELEELLEQLSLATEE------ELQDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 869 EQLENRDSTLQTVEREKTLITEKLQQtLEEVKTLTQEKDDLKQLQESLQIerdqlksdihdtvnmnIDTQEQLRNALESL 948
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQ-LENELEAAALEERLKEARLLLLI----------------AAALLALLGLGGSL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 949 KQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRkIFSLIQEKN 1028
Cdd:COG4717 269 LSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE-LLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1029 ELQQMLESVIAEKEQLKTDLKEN------IEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEV-E 1101
Cdd:COG4717 348 ELQELLREAEELEEELQLEELEQeiaallAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdE 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1102 EKLKEKsqqLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKElTLEHMETERLELAQKLNENYEEVKSITKERKVLK 1181
Cdd:COG4717 428 EELEEE---LEELEEELEELEEELEELREELAELEAELEQLEEDG-ELAELLQELEELKAELRELAEEWAALKLALELLE 503
|
490
....*....|
gi 2217348663 1182 ELQKSFETER 1191
Cdd:COG4717 504 EAREEYREER 513
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
507-1090 |
7.66e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 7.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 507 YDNLVLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQENELSSKVELLREKEDQIKKLQEYIdsQKLENIKMDLS 586
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV--KELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 587 YSLESIEDPKQMKQTLfDAETVALDAKRESafLRSENLELKEKMKELattykqmeNDIQLYQSQLEAKKKMQVDLEKELQ 666
Cdd:PRK03918 242 ELEKELESLEGSKRKL-EEKIRELEERIEE--LKKEIEELEEKVKEL--------KELKEKAEEYIKLSEFYEEYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 667 SAFNEITKLTSLIDGkVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKS-EEL 745
Cdd:PRK03918 311 EIEKRLSRLEEEING-IEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTpEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 746 HIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEF---------QNFKTLHMDFEQKYKMVLEENE 816
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrelteEHRKELLEEYTAELKRIEKELK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 817 RMNQEIVNLSKEAQKFDSSLGALKTELSYKtqELQEKTREVQERLNEMEqlKEQLENRDSTLQTVEREKTLITEKLQQTL 896
Cdd:PRK03918 470 EIEEKERKLRKELRELEKVLKKESELIKLK--ELAEQLKELEEKLKKYN--LEELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 897 EEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSkISEEVSRNLHMEENT 976
Cdd:PRK03918 546 KELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKD-AEKELEREEKELKKL 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 977 GETKDEFQQKMVGIDKKQDLEAKNTQTL-------TADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLK 1049
Cdd:PRK03918 625 EEELDKAFEELAETEKRLEELRKELEELekkyseeEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1050 ---------ENIEMTIENQEELRllgdelKKQQEIVAQEKNHAIKKEGEL 1090
Cdd:PRK03918 705 erekakkelEKLEKALERVEELR------EKVKKYKALLKERALSKVGEI 748
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1403-1604 |
7.98e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.52 E-value: 7.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1403 KRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEI 1482
Cdd:COG3883 23 KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1483 STIQ---------------KQLEAINDKLQNKIQEIYEKEEQFNIKQiSEVQEKVNELKQFK----EHRKAKDSALQSIE 1543
Cdd:COG3883 103 SYLDvllgsesfsdfldrlSALSKIADADADLLEELKADKAELEAKK-AELEAKLAELEALKaeleAAKAELEAQQAEQE 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348663 1544 SKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQ 1604
Cdd:COG3883 182 ALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
493-964 |
1.10e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 493 QENIESELNSLRADYDNLVLDYEQL------------RTEKEEMELKLKEKNDLDEFEALERKTKKDQENELSSKVELLR 560
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAqaeeyellaelaRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 561 EKEDQIKKLQEYIDSQKLENIKMDLSYSLESIEDPKQmkQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQM 640
Cdd:COG1196 342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE--EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 641 ENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDL------------QKELNKEV 708
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALaelleelaeaaaRLLLLLEA 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 709 EENEALREEVILLSELKSLPSEVER-LRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTK---------- 777
Cdd:COG1196 500 EADYEGFLEGVKAALLLAGLRGLAGaVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflpl 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 778 DDLATTQSNYKSTDQEFQNFKTLHMDFEQKY----KMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELS-YKTQELQE 852
Cdd:COG1196 580 DKIRARAALAAALARGAIGAAVDLVASDLREadarYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTlEGEGGSAG 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 853 KTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVN 932
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
490 500 510
....*....|....*....|....*....|..
gi 2217348663 933 MNIDTQEQLRNALESLKQHQETINTLKSKISE 964
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
834-1091 |
1.12e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 834 SSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTverektlITEKLQQTLEEVKTLTQEKDDLKQLQ 913
Cdd:COG3883 2 LALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEE-------LNEEYNELQAELEALQAEIDKLQAEI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 914 ESLQIERDQLksdihdtvnmnidtQEQLRNALESLKQHQETINTLKSKISeevSRNLhmeentgetkDEFQQKMVGIDKK 993
Cdd:COG3883 75 AEAEAEIEER--------------REELGERARALYRSGGSVSYLDVLLG---SESF----------SDFLDRLSALSKI 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 994 QDLEAKNTQTLTADVKDNE-----IIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDE 1068
Cdd:COG3883 128 ADADADLLEELKADKAELEakkaeLEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
|
250 260
....*....|....*....|...
gi 2217348663 1069 LKKQQEIVAQEKNHAIKKEGELS 1091
Cdd:COG3883 208 AEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
452-965 |
1.21e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 452 KLSINLLREIDES--VCSESDVFSNTLDTLSEIEWNPATKLLNQENIESELNSLRADYDN----LVLDYEQLRTEKE--E 523
Cdd:pfam05483 131 KVSLKLEEEIQENkdLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNniekMILAFEELRVQAEnaR 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 524 MELKLKEKNDLDEFEALERKTKKDQENelsskvellreKEDQIKKLqeYIDSQKLENIKMDLSYSLESIEDPKQMKQTLF 603
Cdd:pfam05483 211 LEMHFKLKEDHEKIQHLEEEYKKEIND-----------KEKQVSLL--LIQITEKENKMKDLTFLLEESRDKANQLEEKT 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 604 DAETVALDAKRESA-FLRSENLELKEKMKELATTYKQMENDIQLyqsqlEAKKKMQVDLEKELQSAFNEITKLTSLIDGK 682
Cdd:pfam05483 278 KLQDENLKELIEKKdHLTKELEDIKMSLQRSMSTQKALEEDLQI-----ATKTICQLTEEKEAQMEELNKAKAAHSFVVT 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 683 VPKDLLCNLElegkitDLQKELNKEVEENEalREEVILLSELKSLPSEVERLRKEIQDKS---EELHIITSEKDKLFSEv 759
Cdd:pfam05483 353 EFEATTCSLE------ELLRTEQQRLEKNE--DQLKIITMELQKKSSELEEMTKFKNNKEvelEELKKILAEDEKLLDE- 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 760 vhkESRVQGLLEEIGKTKDDLA----TTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSS 835
Cdd:pfam05483 424 ---KKQFEKIAEELKGKEQELIfllqAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLE 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 836 LGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQES 915
Cdd:pfam05483 501 NKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEY 580
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 2217348663 916 LQIERDQLKSDIHDTVNmniDTQEQLRNALESLKQHQETINTLKSKISEE 965
Cdd:pfam05483 581 EVLKKEKQMKILENKCN---NLKKQIENKNKNIEELHQENKALKKKGSAE 627
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1253-1890 |
1.23e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.51 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1253 LQEEIPVLHEEQELLP-NVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKT 1331
Cdd:pfam10174 58 LKEQYRVTQEENQHLQlTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1332 IKEALEVKHDQLKEHIRETLAKIQE----SQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQE 1407
Cdd:pfam10174 138 TLEEMELRIETQKQTLGARDESIKKllemLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHR 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1408 SHDEMKSVAKEK-------------DDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVN 1474
Cdd:pfam10174 218 RNQLQPDPAKTKalqtviemkdtkiSSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1475 LSEKETEISTIQKQLEAINDklqnkiqeiyekeEQFNIKQISEVqekvnelkqFKEHRKAKDSALQSIESKMLELTNRLQ 1554
Cdd:pfam10174 298 LSKKESELLALQTKLETLTN-------------QNSDCKQHIEV---------LKESLTAKEQRAAILQTEVDALRLRLE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1555 ESQeeiQIMIKEKEEMKRVQEAlqierdqlKENTKEIVAKMKESQEkeyqfLKMTAVNETQEKmceIEHLKEQFETQKLN 1634
Cdd:pfam10174 356 EKE---SFLNKKTKQLQDLTEE--------KSTLAGEIRDLKDMLD-----VKERKINVLQKK---IENLQEQLRDKDKQ 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1635 LENietenirltqiLHENLEEMRSVTKERDD-LRSVEETLKvERDQLKENLRETITR-DLKIQEELRIAHMHLKEQQETI 1712
Cdd:pfam10174 417 LAG-----------LKERVKSLQTDSSNTDTaLTTLEEALS-EKERIIERLKEQREReDRERLEELESLKKENKDLKEKV 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1713 DKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQ---KKVSEMEQLKKQIKDQSLTLSKLE 1789
Cdd:pfam10174 485 SALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLEnqlKKAHNAEEAVRTNPEINDRIRLLE 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1790 IE---NLNLAQKLHENLEEMKSVMKERDNL-----RRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKET 1861
Cdd:pfam10174 565 QEvarYKEESGKAQAEVERLLGILREVENEkndkdKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRR 644
|
650 660
....*....|....*....|....*....
gi 2217348663 1862 VDKLREKISEKtiQISDIQKDLDKSKDEL 1890
Cdd:pfam10174 645 EDNLADNSQQL--QLEELMGALEKTRQEL 671
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1739-1892 |
1.30e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1739 KLQEKIQELKANEHQLITLKKDVNETQKKV----SEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVM--KE 1812
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELaaleARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1813 RDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARmlsKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQK 1892
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELE---AELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1705-1892 |
1.60e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1705 LKEQQETIDKLRGIVSEKTDK-LSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNET----QKKVSEMEQLKKQIK 1779
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKdLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVleehEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1780 DQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHK 1859
Cdd:PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2217348663 1860 ETVDKLREKI-------SEKTIQISDIQKDLDKSKDELQK 1892
Cdd:PRK02224 342 EEAESLREDAddleeraEELREEAAELESELEEAREAVED 381
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
696-906 |
1.89e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 696 KITDLQKELNKEVEENEALREEVI-LLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIG 774
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAaLKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 775 KTKDDLAT-TQSNYKSTDQEFQNFKTLHMDFEQKYKM------VLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKT 847
Cdd:COG4942 101 AQKEELAElLRALYRLGRQPPLALLLSPEDFLDAVRRlqylkyLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348663 848 QELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEK 906
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
812-1490 |
1.95e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 812 LEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLkeQLENRDSTL---QTVEREKTLI 888
Cdd:pfam05483 70 FENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQEL--QFENEKVSLkleEEIQENKDLI 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 889 TEK-----LQQTLEEVKTLTQEKDDLKQLQESlqiERDQLKSDIHDTVNMNIDTQEQLRNALES--------LKQHQETI 955
Cdd:pfam05483 148 KENnatrhLCNLLKETCARSAEKTKKYEYERE---ETRQVYMDLNNNIEKMILAFEELRVQAENarlemhfkLKEDHEKI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 956 NTLKSKISEEVSRN--------LHMEENTGETKDEFQQKMVGIDKKQDLEAKntqTLTADVKDNEIIEQQRKIFSLIQE- 1026
Cdd:pfam05483 225 QHLEEEYKKEINDKekqvslllIQITEKENKMKDLTFLLEESRDKANQLEEK---TKLQDENLKELIEKKDHLTKELEDi 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1027 KNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLK- 1105
Cdd:pfam05483 302 KMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKi 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1106 ------EKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKV 1179
Cdd:pfam05483 382 itmelqKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTA 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1180 LKELQKSFETERDHLRG-----YIREIEATG------LQTKE---ELKIAHIHLKEHQETIDELRRSVSEKTAQIintQD 1245
Cdd:pfam05483 462 IKTSEEHYLKEVEDLKTelekeKLKNIELTAhcdkllLENKEltqEASDMTLELKKHQEDIINCKKQEERMLKQI---EN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1246 LEKSHTKLQEEIPVLHEE-----QELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIK 1320
Cdd:pfam05483 539 LEEKEMNLRDELESVREEfiqkgDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENK 618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1321 SLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNEttKIVSEMEQFKPKDSALLRIEIEmlg 1400
Cdd:pfam05483 619 ALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEE--KLLEEVEKAKAIADEAVKLQKE--- 693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1401 LSKRLQESHDEMKSvakekddlqrLQEVLQSESDQLKEnikeivakhlETEEELKVAHCCLKEQEETINELRVNLSEKET 1480
Cdd:pfam05483 694 IDKRCQHKIAEMVA----------LMEKHKHQYDKIIE----------ERDSELGLYKNKEQEQSSAKAALEIELSNIKA 753
|
730
....*....|
gi 2217348663 1481 EISTIQKQLE 1490
Cdd:pfam05483 754 ELLSLKKQLE 763
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1539-1699 |
1.95e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1539 LQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQE--KEYQFLKMTAVNETqe 1616
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEAriKKYEEQLGNVRNNK-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1617 kmcEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQE 1696
Cdd:COG1579 90 ---EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
...
gi 2217348663 1697 ELR 1699
Cdd:COG1579 167 ELA 169
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1405-1569 |
2.31e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1405 LQESHDEMKSVAKEKddlqrLQEVlQSESDQLKEnikeivakhlETEEELKVAHCCLKEQEETINELRVNLSEKETEIST 1484
Cdd:PRK12704 44 LEEAKKEAEAIKKEA-----LLEA-KEEIHKLRN----------EFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1485 IQKQLEAINDKLQNKIQEIYEKEEqfnikqisEVQEKVNELKQFKEHRkakdSALQSIESKMLELTNRLQESQEEIQIMI 1564
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEE--------ELEELIEEQLQELERI----SGLTAEEAKEILLEKVEEEARHEAAVLI 175
|
....*
gi 2217348663 1565 KEKEE 1569
Cdd:PRK12704 176 KEIEE 180
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1725-2424 |
2.57e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1725 KLSNMQKDLEnsnaKLQEKIQELKAnehQLITLKKDVnetqKKVSEMEQLKKQIKDQSLTLSKLEIENLNlaQKLHENLE 1804
Cdd:TIGR02168 180 KLERTRENLD----RLEDILNELER---QLKSLERQA----EKAERYKELKAELRELELALLVLRLEELR--EELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1805 EMKSVMKERDNLRRVE-------ETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQIS 1877
Cdd:TIGR02168 247 ELKEAEEELEELTAELqeleeklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1878 DIQKDLDKSKDELQKKDRQNHQVKPEKRLLSdgqqhltESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEfqk 1957
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLE-------AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA--- 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1958 ELSMRVKANLSLPYLQTKHIEKLFTANQRCSMEFHRimKKLKYVLSYVTKIKEEQHESINKFEmDFIDEVEKQKELLIKI 2037
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELE-RLEEALEELREELEEA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2038 QhlqQDCDVPSRELRDLKLNQNMDLHIEEILKDFSE---------SEFPSIKTEFQQVLSNRKEMTQFLEEWLNTR---- 2104
Cdd:TIGR02168 474 E---QALDAAERELAQLQARLDSLERLQENLEGFSEgvkallknqSGLSGILGVLSELISVDEGYEAAIEAALGGRlqav 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2105 ----FDIEKLKNGIQKENDR----ICQVNNFFNNRIIAIMNESTEFEERSATISKEWEQDLKSLKEKNEKLFKNY---QT 2173
Cdd:TIGR02168 551 vvenLNAAKKAIAFLKQNELgrvtFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvDD 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2174 LKTSLASGAQVNPT----TQD----------NKNPHVTSRATQLTTEKIRELENSLHEAKESAMHKESKIIKMQKELEVT 2239
Cdd:TIGR02168 631 LDNALELAKKLRPGyrivTLDgdlvrpggviTGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEEL 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2240 NDIIAKLQAKVHESNKCLEKTKETIQVLQDKVALGAKPY---KEEIEDLKMKLVKIDLEKMKN---AKEFEKEISATKAT 2313
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIaqlSKELTELEAEIEELEERLEEAeeeLAEAEAEIEELEAQ 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2314 VEYQKEVIRLLRENLrRSQQAQDTSVISEHTDPQPSNKPLTCGGGSGIVQNTKaliLKSEHIRLEKEISKLKQQNEQLIK 2393
Cdd:TIGR02168 791 IEQLKEELKALREAL-DELRAELTLLNEEAANLRERLESLERRIAATERRLED---LEEQIEELSEDIESLAAEIEELEE 866
|
730 740 750
....*....|....*....|....*....|.
gi 2217348663 2394 QKNELLSNNQHLSNEVKTWKERTLKREAHKQ 2424
Cdd:TIGR02168 867 LIEELESELEALLNERASLEEALALLRSELE 897
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
795-1203 |
2.73e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.27 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 795 QNFKTLHMDFEQKYKMVLEENE---RMNQEIVNLSKEAQKFDSSLGALKTELsyktQELQEKTREVQERLNEMEQLKEQL 871
Cdd:pfam05557 83 KYLEALNKKLNEKESQLADAREvisCLKNELSELRRQIQRAELELQSTNSEL----EELQERLDLLKAKASEAEQLRQNL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 872 ENRDSTLQTVE-REKTLITEKLQQT--LEEVKTLTQEK---DDLKQLQESLQIERDQLKSDIHD---------------- 929
Cdd:pfam05557 159 EKQQSSLAEAEqRIKELEFEIQSQEqdSEIVKNSKSELariPELEKELERLREHNKHLNENIENklllkeevedlkrkle 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 930 ----------TVNMNIDTQEQLRNALESLKQ-HQETINT---LKSKISEEVSRNL-HMEENTGETKDEFQQKMVGIDKKQ 994
Cdd:pfam05557 239 reekyreeaaTLELEKEKLEQELQSWVKLAQdTGLNLRSpedLSRRIEQLQQREIvLKEENSSLTSSARQLEKARRELEQ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 995 DLEAKNTQTLTADVKDNEIIEQ----QRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENiemtienqEELRLLGDELK 1070
Cdd:pfam05557 319 ELAQYLKKIEDLNKKLKRHKALvrrlQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLL--------ERIEEAEDMTQ 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1071 KQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNvqEEMSEMQKKINEIENLKNELKNKELTLE 1150
Cdd:pfam05557 391 KMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSK--EEVDSLRRKLETLELERQRLREQKNELE 468
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1151 hMETERLELAQKLNENYEEV-----KSITKERKVLKELQKSFETERDHLRGYIREIEA 1203
Cdd:pfam05557 469 -MELERRCLQGDYDPKKTKVlhlsmNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLED 525
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
514-924 |
2.73e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.27 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 514 YEQLRTEKEEMELKLKEKNDLDEFEALERKTK----KDQENELSSKVELLREKE-DQIKKLQEYIDSQKLENIKMDLSYS 588
Cdd:pfam05557 11 LSQLQNEKKQMELEHKRARIELEKKASALKRQldreSDRNQELQKRIRLLEKREaEAEEALREQAELNRLKKKYLEALNK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 589 LESIEDPKQ---------MKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQ----LEAKK 655
Cdd:pfam05557 91 KLNEKESQLadareviscLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQqsslAEAEQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 656 KMQvDLEKELQSAFNeitkltsliDGKVPKDLLCNLElegKITDLQKELNKEVEENEALRE---EVILLSE--------- 723
Cdd:pfam05557 171 RIK-ELEFEIQSQEQ---------DSEIVKNSKSELA---RIPELEKELERLREHNKHLNEnieNKLLLKEevedlkrkl 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 724 ---------LKSLPSEVERLRKEIQ-----DKSEELHIITSEkdKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKS 789
Cdd:pfam05557 238 ereekyreeAATLELEKEKLEQELQswvklAQDTGLNLRSPE--DLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 790 TDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKE-------AQKFDSSLGALKT--ELSYKTQELQEKTREVQER 860
Cdd:pfam05557 316 LEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKErdgyraiLESYDKELTMSNYspQLLERIEEAEDMTQKMQAH 395
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 861 LNEME----QLKEQLENRDSTLQTVEREKTLIteKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLK 924
Cdd:pfam05557 396 NEEMEaqlsVAEEELGGYKQQAQTLERELQAL--RQQESLADPSYSKEEVDSLRRKLETLELERQRLR 461
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1653-2429 |
2.75e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1653 LEEMRSVTKERDDLRSVEETLKVERDQLKENlRETITRDLKIQEELR--IAHMHLKEQQETIDKLRGIVSEktdkLSNMQ 1730
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRRE-REKAERYQALLKEKReyEGYELLKEKEALERQKEAIERQ----LASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1731 KDLENSNAKLQEKIQELKANEHQLITLKKDVNEtqKKVSEMEQLKKQIKDQSLTLSKLE--IENLN-----LAQKLHENL 1803
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKD--LGEEEQLRVKEKIGELEAEIASLErsIAEKEreledAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1804 EEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDL 1883
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1884 DKSKDELQKKDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIE-FQKELSmR 1962
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDrVEKELS-K 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1963 VKANLSLPYLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQH---ESINKFEMDFI----DEVEKQKELLI 2035
Cdd:TIGR02169 488 LQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYAtaiEVAAGNRLNNVvvedDAVAKEAIELL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2036 KIQHLQQDCDVPSRELRD-------LKLNQNMDLHIEeiLKDFSESEFPSIKTEFQQVL------SNRKEMTQFleewln 2102
Cdd:TIGR02169 568 KRRKAGRATFLPLNKMRDerrdlsiLSEDGVIGFAVD--LVEFDPKYEPAFKYVFGDTLvvedieAARRLMGKY------ 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2103 trfdieklkngiqkendricqvnnffnnRIIAImneSTEFEERSATI------SKEWEQDLKSLKEKNEKLFKNYQTLKT 2176
Cdd:TIGR02169 640 ----------------------------RMVTL---EGELFEKSGAMtggsraPRGGILFSRSEPAELQRLRERLEGLKR 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2177 SLASGAQvnpttqdnknphvtsratqltteKIRELENSLHEAKESAMHKESKIIKMQKELEVTNDIIAKLQAKVHESNKC 2256
Cdd:TIGR02169 689 ELSSLQS-----------------------ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2257 LEKTKETIQVLQDKVALGAK---PYKEEIEDLKMKLVKI-DLEKMKNAKEFEKEISATKATVEYQKEVIRLLRENLRRSQ 2332
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEArieELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2333 QA--------QDTSVISEHTDPQPSNKPLTCGGGSGIVQNTKALI--LKSEHIRLEKEISKLKQQNEQLIKQKNELLSNN 2402
Cdd:TIGR02169 826 LEkeylekeiQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELeeLEAALRDLESRLGDLKKERDELEAQLRELERKI 905
|
810 820
....*....|....*....|....*..
gi 2217348663 2403 QHLSNEVKTWKERTLKREAHKQVTCEN 2429
Cdd:TIGR02169 906 EELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1121-1337 |
2.77e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1121 VQEEMSEMQKKIN----EIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKErkvLKELQKSFETERDHLRG 1196
Cdd:COG4942 32 LQQEIAELEKELAalkkEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE---IAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1197 YIREIEATGLQTKEELKIahihlkeHQETIDELRRSVsektaqiintQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSET 1276
Cdd:COG4942 109 LLRALYRLGRQPPLALLL-------SPEDFLDAVRRL----------QYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217348663 1277 QETMNElELLTEQSTTKDSTTLARIEMERL--RLNEKFQESQEEIKSLTKERDNLKTIKEALE 1337
Cdd:COG4942 172 ERAELE-ALLAELEEERAALEALKAERQKLlaRLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1015-1542 |
2.97e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.27 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1015 EQQRKIFSLIQEKNELQQM---LESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEivaqEKNHAIKKEGELS 1091
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMeleHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREA----EAEEALREQAELN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1092 RTCDR-LAEVEEKLKEKSQQlqekqqqllnvQEEMSEMQKKI-NEIENLKNELKNKELTLEHMETERLELAQKLNENYEE 1169
Cdd:pfam05557 79 RLKKKyLEALNKKLNEKESQ-----------LADAREVISCLkNELSELRRQIQRAELELQSTNSELEELQERLDLLKAK 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1170 VKSITKERKVLKELQKSFETERDHLRGYIREIEATGlQTKEELKIAHI-------------HLKEHQETIDELRRSVS-- 1234
Cdd:pfam05557 148 ASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQE-QDSEIVKNSKSelaripelekeleRLREHNKHLNENIENKLll 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1235 --------------EKTAQIINTQDLEKSH--TKLQEEIPVLHEEQELLPNVKEVSETQETMNELEL-LTEQSTTKDSTT 1297
Cdd:pfam05557 227 keevedlkrklereEKYREEAATLELEKEKleQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIvLKEENSSLTSSA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1298 LA------RIEMERLRLNEKFQESQEEIKS--------------LTKERDNLKTI-----KEALEVKHD-QLKEHIRETL 1351
Cdd:pfam05557 307 RQlekarrELEQELAQYLKKIEDLNKKLKRhkalvrrlqrrvllLTKERDGYRAIlesydKELTMSNYSpQLLERIEEAE 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1352 AKIQESQSKQEQSLNMKEKDNETTKIVSEMeqfkpkdSALLRIEIEMLglskRLQESHDEMKSVAKEKDDLQRLQEVLQS 1431
Cdd:pfam05557 387 DMTQKMQAHNEEMEAQLSVAEEELGGYKQQ-------AQTLERELQAL----RQQESLADPSYSKEEVDSLRRKLETLEL 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1432 ESDQLKENIKEIvakhleteeELKVAHCCLKEQEETINELRVNLSEKETEISTIQK-----QLEAINDKLQNKIQEIYEK 1506
Cdd:pfam05557 456 ERQRLREQKNEL---------EMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRknqleKLQAEIERLKRLLKKLEDD 526
|
570 580 590
....*....|....*....|....*....|....*....
gi 2217348663 1507 EEQ---FNIKQISEVQEKVNELKQFKEHRKAKDSALQSI 1542
Cdd:pfam05557 527 LEQvlrLPETTSTMNFKEVLDLRKELESAELKNQRLKEV 565
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
910-1520 |
3.12e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.43 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 910 KQLQESLQIER-----DQLKsDIHDTVNMNIDTQEQLRNALESlkqHQETINTLKSKISEEVSRNLHMEENTGETKDEFQ 984
Cdd:PRK01156 153 KILDEILEINSlernyDKLK-DVIDMLRAEISNIDYLEEKLKS---SNLELENIKKQIADDEKSHSITLKEIERLSIEYN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 985 QKMVGIDK-KQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESViaeKEQLKTDLKENIEMTIENQEELR 1063
Cdd:PRK01156 229 NAMDDYNNlKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERH---MKIINDPVYKNRNYINDYFKYKN 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1064 LLGDELKKQQEIVAQeknhaIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELK 1143
Cdd:PRK01156 306 DIENKKQILSNIDAE-----INKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1144 NKELTLEHMETERLELAQKLNENYEEVKSITKE-RKVLKELQ---KSFETERDHLRGYIREIE--ATGLQTKEELKIAHI 1217
Cdd:PRK01156 381 EYSKNIERMSAFISEILKIQEIDPDAIKKELNEiNVKLQDISskvSSLNQRIRALRENLDELSrnMEMLNGQSVCPVCGT 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1218 HLKEhqETIDELRRSVSEKTAQIINTQD-LEKSHTKLQEEIPVLHEEQELLpNVKEVSETQETMNELELLtEQSTTKDST 1296
Cdd:PRK01156 461 TLGE--EKSNHIINHYNEKKSRLEEKIReIEIEVKDIDEKIVDLKKRKEYL-ESEEINKSINEYNKIESA-RADLEDIKI 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1297 TLARIEMERLrlneKFQESQEEIKSLTKERDNLKtikealevKHDQLKEHIRETLAKIQESQS-KQEQSLNMKEKDNETT 1375
Cdd:PRK01156 537 KINELKDKHD----KYEEIKNRYKSLKLEDLDSK--------RTSWLNALAVISLIDIETNRSrSNEIKKQLNDLESRLQ 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1376 KIVSEMEQFKP-KDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLqSESDQLKENIKEIVAKHLETEEEl 1454
Cdd:PRK01156 605 EIEIGFPDDKSyIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQI-AEIDSIIPDLKEITSRINDIEDN- 682
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217348663 1455 kvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLqNKIQEIYEKEEQFnIKQISEVQE 1520
Cdd:PRK01156 683 ------LKKSRKALDDAKANRARLESTIEILRTRINELSDRI-NDINETLESMKKI-KKAIGDLKR 740
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1253-1605 |
3.19e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.27 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1253 LQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIE-MERLRLNEKFQESQEEIKSLTKERDNLKT 1331
Cdd:pfam17380 245 LAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEkMEQERLRQEKEEKAREVERRRKLEEAEKA 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1332 IKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKpkdsALLRIEIEMLGLSKRLQESHDE 1411
Cdd:pfam17380 325 RQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMR----ELERLQMERQQKNERVRQELEA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1412 MKSVAKEKDDLQRLQEVLQSESDQLK---ENIKEIVAKHLETEEElkvahcclKEQEetinelRVNLSEKETeistiQKQ 1488
Cdd:pfam17380 401 ARKVKILEEERQRKIQQQKVEMEQIRaeqEEARQREVRRLEEERA--------REME------RVRLEEQER-----QQQ 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1489 LEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKA---KDSALQSIESKMLELTNRLQESQ-----EEI 1560
Cdd:pfam17380 462 VERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAmieEERKRKLLEKEMEERQKAIYEEErrreaEEE 541
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1561 QIMIKEKEEMKRVQEALQI---ERDQLK--ENTKEIVAKMKESQEKEYQF 1605
Cdd:pfam17380 542 RRKQQEMEERRRIQEQMRKateERSRLEamEREREMMRQIVESEKARAEY 591
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
494-970 |
3.76e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 494 ENIESELNSLRADYDNLVLDYEQLRTEKEEMElKLKEkndldEFEALERKTKKdQENELSSKVELLREKEDQIKKLQEYI 573
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELE-ELKE-----EIEELEKELES-LEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 574 dsQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKELattykqmendiqlyqSQLEA 653
Cdd:PRK03918 276 --EELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL---------------EEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 654 KKKMQVDLEKELQSAFNEITKLTSLIDgkVPKDLLCNLE-LEGKITDLQKE-LNKEVEENEALREEVIL-LSELKSLPSE 730
Cdd:PRK03918 339 RLEELKKKLKELEKRLEELEERHELYE--EAKAKKEELErLKKRLTGLTPEkLEKELEELEKAKEEIEEeISKITARIGE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 731 VERLRKEIQDKSEELH------------IITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFK 798
Cdd:PRK03918 417 LKKEIKELKKAIEELKkakgkcpvcgreLTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 799 TLHMDFEQ-------KYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSyKTQELQEKTREVQERLNEMEQLKEQL 871
Cdd:PRK03918 497 KLKELAEQlkeleekLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEEELAEL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 872 ENRdstlqtVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSdIHDTVNMNIDTQEQLRNALESLKqh 951
Cdd:PRK03918 576 LKE------LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKK-LEEELDKAFEELAETEKRLEELR-- 646
|
490
....*....|....*....
gi 2217348663 952 qETINTLKSKISEEVSRNL 970
Cdd:PRK03918 647 -KELEELEKKYSEEEYEEL 664
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
695-1296 |
4.19e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 695 GKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLfSEVV--HKESRvqgllEE 772
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEA-DEVLeeHEERR-----EE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 773 IGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQE 852
Cdd:PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 853 KTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDqlksdihdtvn 932
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG----------- 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 933 mniDTQEQLRNALESLKQHQETINTLKSKISeEVSRNLHMEENTGETKDEFqqkmvgidkkqdLEAKNTQTLTADVKDNE 1012
Cdd:PRK02224 402 ---DAPVDLGNAEDFLEELREERDELREREA-ELEATLRTARERVEEAEAL------------LEAGKCPECGQPVEGSP 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1013 I---IEQQRkifsliQEKNELQQMLESVIAEKEQLKTDLkENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGE 1089
Cdd:PRK02224 466 HvetIEEDR------ERVEELEAELEDLEEEVEEVEERL-ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRER 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1090 LSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELknkeltlehmetERLELAQKLNENYEE 1169
Cdd:PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL------------ERIRTLLAAIADAED 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1170 vkSITKERKVLKELQKSFETERDHL---RGYIREIEATGLQTK-EELKIAHIHLKEHQETIDElrrsvsektaqiiNTQD 1245
Cdd:PRK02224 607 --EIERLREKREALAELNDERRERLaekRERKRELEAEFDEARiEEAREDKERAEEYLEQVEE-------------KLDE 671
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 2217348663 1246 LEKSHTKLQEEIPVLHEEQELLPNVKEVSET-QETMNELELLTEQSTTKDST 1296
Cdd:PRK02224 672 LREERDDLQAEIGAVENELEELEELRERREAlENRVEALEALYDEAEELESM 723
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
870-1093 |
4.36e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 870 QLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIhDTVNMNIDT-QEQLRNALESL 948
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI-AEAEAEIEErREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 949 KQHQETINTLKSKISeevSRNLhmeentgetkDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEiieqqrkifsliQEKN 1028
Cdd:COG3883 96 YRSGGSVSYLDVLLG---SESF----------SDFLDRLSALSKIADADADLLEELKADKAELE------------AKKA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348663 1029 ELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT 1093
Cdd:COG3883 151 ELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1400-1529 |
4.57e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 45.01 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1400 GLSKRLQESHDEMKS-----------VAKEKDDLQRLQEVLQSESDQLKENIKEIVAKhleTEEELKVAHCCLKEQEETI 1468
Cdd:smart00787 144 GLKEGLDENLEGLKEdykllmkelelLNSIKPKLRDRKDALEEELRQLKQLEDELEDC---DPTELDRAKEKLKKLLQEI 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348663 1469 NELRVNLSEKETEISTIQKQLEAINDKLQ------NKIQEIYEKEEQFNIKQISEVQEKVNELKQFK 1529
Cdd:smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSelnteiAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLT 287
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1732-2306 |
4.68e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1732 DLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMK 1811
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1812 ERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELktarmlsKEHKETVDKLrEKISEKTIQISDIQKDLDKSKDELQ 1891
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI-------EELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1892 KKDRQNHQVKPEKRllsdGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKELSmRVKANLSLpy 1971
Cdd:PRK03918 311 EIEKRLSRLEEEIN----GIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE-RLKKRLTG-- 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1972 LQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFE----------------------MDFIDEVEK 2029
Cdd:PRK03918 384 LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteehrkellEEYTAELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2030 QKELLIKIQHLQQDCDVPSRELRDLKLNQNMDLHIEEILKDFSESEFPSIKTEFQQVLSNRKEMTQFLEEWLNTRFDIEK 2109
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2110 LKNGIQKENDricqvnnfFNNRIIAIMNESTEFEERSATISKEWE-------QDLKSLKEKNEKLFKNYQTLKTSLASGA 2182
Cdd:PRK03918 544 LKKELEKLEE--------LKKKLAELEKKLDELEEELAELLKELEelgfesvEELEERLKELEPFYNEYLELKDAEKELE 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2183 QVNPTTQDNKNPHVTSRAT-QLTTEKIRELENSLHEAKESAMHKESKiiKMQKELEVTNDIIAKLQAKVHESNKCLEKTK 2261
Cdd:PRK03918 616 REEKELKKLEEELDKAFEElAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRREEIK 693
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 2217348663 2262 ETIQVLQDKVAlGAKPYKEEIEDLKMKLVKID--LEKMKNAKEFEKE 2306
Cdd:PRK03918 694 KTLEKLKEELE-EREKAKKELEKLEKALERVEelREKVKKYKALLKE 739
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
891-1626 |
5.14e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.84 E-value: 5.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 891 KLQQTLEEVKTLTQEKDDLKQLQESlqierdqlksDIHDTVNMNIDTQEQLRNAL--ESLKQHQETINTLKSKISEEVSR 968
Cdd:COG5022 763 RYLQALKRIKKIQVIQHGFRLRRLV----------DYELKWRLFIKLQPLLSLLGsrKEYRSYLACIIKLQKTIKREKKL 832
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 969 NLHMEENTGETKDEFQQKMVgidkkqdlEAKNTQTLTADVKDNEIIEQQRKIFSLIQEK-NELQQMLESVIAEKEQLKTD 1047
Cdd:COG5022 833 RETEEVEFSLKAEVLIQKFG--------RSLKAKKRFSLLKKETIYLQSAQRVELAERQlQELKIDVKSISSLKLVNLEL 904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1048 LKENIEMTIENQEELRLlgdELKKQQEIVAQEKNHAIKKEGELSRTCDRlaeveEKLKEKsqqlqekqqqlLNVQEEMSE 1127
Cdd:COG5022 905 ESEIIELKKSLSSDLIE---NLEFKTELIARLKKLLNNIDLEEGPSIEY-----VKLPEL-----------NKLHEVESK 965
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1128 MQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKElqksfeterdhlrgyiREIEATGLQ 1207
Cdd:COG5022 966 LKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKE----------------LPVEVAELQ 1029
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1208 TkEELKIAHIHLKEHQET-IDELRRsvsektaqiintqDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQET----MNE 1282
Cdd:COG5022 1030 S-ASKIISSESTELSILKpLQKLKG-------------LLLLENNQLQARYKALKLRRENSLLDDKQLYQLEStenlLKT 1095
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1283 LELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLK-----EHIRETLAKIQES 1357
Cdd:COG5022 1096 INVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDglfweANLEALPSPPPFA 1175
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1358 QSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQEShdemksvAKEKDDLQRLQEVLQSESDQLK 1437
Cdd:COG5022 1176 ALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKL-------ISEGWVPTEYSTSLKGFNNLNK 1248
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1438 ENIKEIVAKHLETEEELKVAHCCLKEQEEtinelrvnlsEKETEISTIQKQLEAINDKLQNkiqEIYEKEEQFNIKQISE 1517
Cdd:COG5022 1249 KFDTPASMSNEKLLSLLNSIDNLLSSYKL----------EEEVLPATINSLLQYINVGLFN---ALRTKASSLRWKSATE 1315
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1518 VQEKVNELKQFKEHRKAKDSALQSIEskmleltnrLQESQEEIQIMIKEKEEMKRV----QEALQIERDQLKEN------ 1587
Cdd:COG5022 1316 VNYNSEELDDWCREFEISDVDEELEE---------LIQAVKVLQLLKDDLNKLDELldacYSLNPAEIQNLKSRydpadk 1386
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 2217348663 1588 ----TKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKE 1626
Cdd:COG5022 1387 ennlPKEILKKIEALLIKQELQLSLEGKDETEVHLSEIFSEEK 1429
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
765-1203 |
5.51e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 5.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 765 RVQGLLEEIGKTKDDLATTQSNYkstdQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVnLSKEAQKFdSSLGALKTElS 844
Cdd:PRK04863 234 DMEAALRENRMTLEAIRVTQSDR----DLFKHLITESTNYVAADYMRHANERRVHLEEA-LELRRELY-TSRRQLAAE-Q 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 845 YKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLI----------TEKLQQTLEEVKTLTQEKDDLKQLQE 914
Cdd:PRK04863 307 YRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIeryqadleelEERLEEQNEVVEEADEQQEENEARAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 915 SLQIERDQLKSDIHDtVNMNIDTQE----QLRNALESLKQHQE-------TINTLKSKISEEVSRnlhmEENTGETKDEF 983
Cdd:PRK04863 387 AAEEEVDELKSQLAD-YQQALDVQQtraiQYQQAVQALERAKQlcglpdlTADNAEDWLEEFQAK----EQEATEELLSL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 984 QQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESViaekEQLKTDLKEnIEMTIENQEELR 1063
Cdd:PRK04863 462 EQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQL----QQLRMRLSE-LEQRLRQQQRAE 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1064 LLGDELKKQqeivaqeknhaikkegeLSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELK 1143
Cdd:PRK04863 537 RLLAEFCKR-----------------LGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348663 1144 NKElTLEHMETERLE-LAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEA 1203
Cdd:PRK04863 600 ARA-PAWLAAQDALArLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDE 659
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
733-1824 |
5.55e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 733 RLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQ---EFQNFKTLHMDFEQKYK 809
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEmraRLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 810 MVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQtveREKTLIT 889
Cdd:pfam01576 82 SRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLS---KERKLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 890 EKLQqtlEEVKTLTQEKDDLKQLQEsLQIERDQLKSDIHDtvnmNIDTQEQLRNALESLKQHQE-TINTLKSKISEEVSR 968
Cdd:pfam01576 159 ERIS---EFTSNLAEEEEKAKSLSK-LKNKHEAMISDLEE----RLKKEEKGRQELEKAKRKLEgESTDLQEQIAELQAQ 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 969 NLHMEENTGETKDEFQQKMVGIDKKQdlEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDL 1048
Cdd:pfam01576 231 IAELRAQLAKKEEELQAALARLEEET--AQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTEL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1049 KENIEMTIENQEELRLLGDELKKQQEIVAQE-KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSE 1127
Cdd:pfam01576 309 EDTLDTTAAQQELRSKREQEVTELKKALEEEtRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAE 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1128 MQKKINEIENLKNElknkeltlehMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQ 1207
Cdd:pfam01576 389 LQAELRTLQQAKQD----------SEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIK 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1208 TKEELKIAHIHLKEHQETIDELRRsvsEKTAQIINTQDLEKSHTKLQEEipvLHEEQELLPNV-KEVSETQETMNELELL 1286
Cdd:pfam01576 459 LSKDVSSLESQLQDTQELLQEETR---QKLNLSTRLRQLEDERNSLQEQ---LEEEEEAKRNVeRQLSTLQAQLSDMKKK 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1287 TEQsttkDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQL---KEHIRETLAKIQESQSKQEQ 1363
Cdd:pfam01576 533 LEE----DAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLlvdLDHQRQLVSNLEKKQKKFDQ 608
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1364 SLnmKEKDNETTKIVSEMEQfkpKDSALLRIEIEMLGLSKRLQESHDemksvakEKDDLQRLQEVLQSESDQLKENIKEI 1443
Cdd:pfam01576 609 ML--AEEKAISARYAEERDR---AEAEAREKETRALSLARALEEALE-------AKEELERTNKQLRAEMEDLVSSKDDV 676
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1444 VAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVN 1523
Cdd:pfam01576 677 GKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEA 756
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1524 ELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKey 1603
Cdd:pfam01576 757 ELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKK-- 834
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1604 qflkmtavnetqekmceiehlkeqfetqklnLENIETENIRLTQILHENLEEMRSVTKERDDLrsveetlkveRDQLKE- 1682
Cdd:pfam01576 835 -------------------------------LKNLEAELLQLQEDLAASERARRQAQQERDEL----------ADEIASg 873
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1683 NLRETITRDLKIQEELRIAHMhlkeqQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVN 1762
Cdd:pfam01576 874 ASGKSALQDEKRRLEARIAQL-----EEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNK 948
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348663 1763 ETQKKVSEMEQLKKQikDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKerdNLRRVEETLK 1824
Cdd:pfam01576 949 ELKAKLQEMEGTVKS--KFKSSIAALEAKIAQLEEQLEQESRERQAANK---LVRRTEKKLK 1005
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
493-718 |
5.58e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 5.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 493 QENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNDldEFEALERKTKKdQENELSSKVELLREKEDQIKKLQEY 572
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER--RIAALARRIRA-LEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 573 IDSQKLENIKMDLSYSLESIEDPKQMkqtLFDAETvALDAKRESAFLRSENLELKEKMKELATTYKQME---NDIQLYQS 649
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLAL---LLSPED-FLDAVRRLQYLKYLAPARREQAEELRADLAELAalrAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348663 650 QLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEV 718
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1437-1934 |
5.67e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 5.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1437 KENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNK--IQEIYEKEEQFNIKQ 1514
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKreAQEEQLKKQQLLKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1515 ISEVQEKVNELKQFKEHRKAKDSA-----LQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTK 1589
Cdd:TIGR00618 266 RARIEELRAQEAVLEETQERINRArkaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1590 EIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSv 1669
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQG- 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1670 eeTLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRgivsEKTDKLSNMQKDLENSNAKLQE---KIQE 1746
Cdd:TIGR00618 425 --QLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLK----EREQQLQTKEQIHLQETRKKAVvlaRLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1747 LKANEHQLI----------------------------TLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQK 1798
Cdd:TIGR00618 499 LQEEPCPLCgscihpnparqdidnpgpltrrmqrgeqTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1799 LHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQ------ETKARDLEIQQELKT-----ARMLSKEHKETVDKLRE 1867
Cdd:TIGR00618 579 DNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHallrklQPEQDLQDVRLHLQQcsqelALKLTALHALQLTLTQE 658
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1868 KISEKTIQISDIQKDLDKSKD-ELQKKDRQNHQVKPEKRLLSdgqqHLTESLREKCSRIKELLKRYSE 1934
Cdd:TIGR00618 659 RVREHALSIRVLPKELLASRQlALQKMQSEKEQLTYWKEMLA----QCQTLLRELETHIEEYDREFNE 722
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
493-677 |
5.75e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 5.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 493 QENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNdlDEFEALERKTKKDQEnELSSKVELLREKEDQIKKLQEY 572
Cdd:COG3883 32 LEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQ--AEIAEAEAEIEERRE-ELGERARALYRSGGSVSYLDVL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 573 IDSQ-------KLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKREsafLRSENLELKEKMKELATTYKQMENDIQ 645
Cdd:COG3883 109 LGSEsfsdfldRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAE---LEALKAELEAAKAELEAQQAEQEALLA 185
|
170 180 190
....*....|....*....|....*....|..
gi 2217348663 646 LYQSQLEAKKKMQVDLEKELQSAFNEITKLTS 677
Cdd:COG3883 186 QLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1465-1632 |
5.90e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1465 EETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNI--KQISEVQEKVNEL-KQFKEHRKAKDSALQS 1541
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEAlqAEIDKLQAEIAEAeAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1542 I--------------ESKM-------LELTNRLQESQ-EEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMK--E 1597
Cdd:COG3883 95 LyrsggsvsyldvllGSESfsdfldrLSALSKIADADaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAelE 174
|
170 180 190
....*....|....*....|....*....|....*
gi 2217348663 1598 SQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQK 1632
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1736-1896 |
6.58e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1736 SNAKLQEKIQELKANEHQLITLKKDVNETQKKV----SEMEQLKKQIKDQSLTLSKLE---------IENLNLAQ-KLHE 1801
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEkallKQLAALERRIAALARRIRALEqelaaleaeLAELEKEIaELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1802 NLEEMKSVMKER-----------------------------DNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTAR 1852
Cdd:COG4942 98 ELEAQKEELAELlralyrlgrqpplalllspedfldavrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2217348663 1853 MLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQ 1896
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1712-1871 |
7.98e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 7.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1712 IDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKD--QSLTLSKlE 1789
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYEALQK-E 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1790 IENLNLAQKLHEnlEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARmlsKEHKETVDKLREKI 1869
Cdd:COG1579 98 IESLKRRISDLE--DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL---EELEAEREELAAKI 172
|
..
gi 2217348663 1870 SE 1871
Cdd:COG1579 173 PP 174
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
712-1204 |
9.02e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 9.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 712 EALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVhkESRVQGLLEEIGKTKDDLATTQSNYKSTD 791
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 792 QEFQNFKTLHMDFEQKYKMVLE-ENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQ 870
Cdd:COG4913 323 EELDELEAQIRGNGGDRLEQLErEIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEA 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 871 LENRDSTLQTverektliteKLQQTLEEVKTLTQEKDDLKQLQ-----ESLQIeRDQLKSDI-HDTVNMNI--------D 936
Cdd:COG4913 403 LEEALAEAEA----------ALRDLRRELRELEAEIASLERRKsnipaRLLAL-RDALAEALgLDEAELPFvgelievrP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 937 TQEQLRNALESL---------------KQHQETINTLKSK---ISEEVSRNLHMEENTGETKDEFQQKMVGIDKK----- 993
Cdd:COG4913 472 EEERWRGAIERVlggfaltllvppehyAAALRWVNRLHLRgrlVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPfrawl 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 994 -------------QDLEA-KNTQ---TLTADVKDN----------EIIEQ-------QRKIFSLIQEKNELQQMLESVIA 1039
Cdd:COG4913 552 eaelgrrfdyvcvDSPEElRRHPraiTRAGQVKGNgtrhekddrrRIRSRyvlgfdnRAKLAALEAELAELEEELAEAEE 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1040 EKEQLKTDLKENiemtienQEELRLLGDELKKQQEIV----AQEKNHAIKKE-GELSRTCDRLAEVEEKLKEKSQQLQEK 1114
Cdd:COG4913 632 RLEALEAELDAL-------QERREALQRLAEYSWDEIdvasAEREIAELEAElERLDASSDDLAALEEQLEELEAELEEL 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1115 QQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEhmETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHL 1194
Cdd:COG4913 705 EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE--DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL 782
|
570
....*....|
gi 2217348663 1195 RGYIREIEAT 1204
Cdd:COG4913 783 NRAEEELERA 792
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1025-1265 |
9.80e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 9.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1025 QEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKL 1104
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1105 KEKsqqlqekqqqLLNVQEEMSEMQkKINEIENLKNELKNKEltLEHMETERLELAQKLNENYEEVKSITKERKVLKELQ 1184
Cdd:COG4942 100 EAQ----------KEELAELLRALY-RLGRQPPLALLLSPED--FLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1185 KSFETERDHLRGYIREIEatglQTKEELKIAhihLKEHQETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQ 1264
Cdd:COG4942 167 AELEAERAELEALLAELE----EERAALEAL---KAERQKLLARLEKELAELAAEL---AELQQEAEELEALIARLEAEA 236
|
.
gi 2217348663 1265 E 1265
Cdd:COG4942 237 A 237
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
712-967 |
1.02e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 712 EALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKdklfsevvhkESRVQGLLEEIGKTKDDlattqsnykstd 791
Cdd:pfam07888 38 ECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRREL----------ESRVAELKEELRQSREK------------ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 792 qefqnfktlHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKtelsyktQELQEKTREVQERLNEMEQLKEQL 871
Cdd:pfam07888 96 ---------HEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELE-------EDIKTLTQRVLERETELERMKERA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 872 ENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDI----------HDTVNMNIDTQEQL 941
Cdd:pfam07888 160 KKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTIttltqklttaHRKEAENEALLEEL 239
|
250 260
....*....|....*....|....*.
gi 2217348663 942 RNALESLKQHQETINTLKSKISEEVS 967
Cdd:pfam07888 240 RSLQERLNASERKVEGLGEELSSMAA 265
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
480-1076 |
1.06e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 480 SEIEWNPATKLLNQEN-IESELNSLRADYDNLVLDYEQLRTEKEEMELKLKE-KNDLDEFEALE------RKTKKDQENE 551
Cdd:PRK02224 194 AQIEEKEEKDLHERLNgLESELAELDEEIERYEEQREQARETRDEADEVLEEhEERREELETLEaeiedlRETIAETERE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 552 LSSKVELLREKEDQIKKLQEYI------------DSQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAF- 618
Cdd:PRK02224 274 REELAEEVRDLRERLEELEEERddllaeaglddaDAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADd 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 619 LRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkDLLCNL-ELEGKI 697
Cdd:PRK02224 354 LEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLE-----ELREERdELRERE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 698 TDLQ---KELNKEVEENEALREEvillselkslpsevERLRKEIQDKSEELHIITSEKDKlfsevvhkesrvqgllEEIG 774
Cdd:PRK02224 429 AELEatlRTARERVEEAEALLEA--------------GKCPECGQPVEGSPHVETIEEDR----------------ERVE 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 775 KTKDDLATTQsnykstdqefqnfktlhmdfeqkykmvlEENERMNQEIvNLSKEAQKFDSSLGALKTELSYKTQELQEKT 854
Cdd:PRK02224 479 ELEAELEDLE----------------------------EEVEEVEERL-ERAEDLVEAEDRIERLEERREDLEELIAERR 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 855 REVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLksdihdtvnmn 934
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL----------- 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 935 iDTQEQLRNALESLKQHQETINtlkskiseevsrnlhmEENTgETKDEFQQKMvgiDKKQDLEAKntqtltadvKDNEII 1014
Cdd:PRK02224 599 -AAIADAEDEIERLREKREALA----------------ELND-ERRERLAEKR---ERKRELEAE---------FDEARI 648
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217348663 1015 EQQRkifsliQEKNELQQMLESV---IAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIV 1076
Cdd:PRK02224 649 EEAR------EDKERAEEYLEQVeekLDELREERDDLQAEIGAVENELEELEELRERREALENRV 707
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1657-1880 |
1.10e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1657 RSVTKERDDLRSVEETLKVERDQLKENLRETitrdlkiQEELRiahmHLKEQQETIDklrgiVSEKTDKLSNMQKDLENS 1736
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEA-------EAALE----EFRQKNGLVD-----LSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1737 NAKLQEKIQELKANEHQLITLKKDVNETQKKVSE---MEQLKKQIKDQSLTLSKL----------------EIENLNlAQ 1797
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELLQspvIQQLRAQLAELEAELAELsarytpnhpdvialraQIAALR-AQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1798 KLHENLEEMKSVMKERDNLRRVEETLKLERDQLKE---SLQETKARDLEIQQELKTARMLskeHKETVDKLREKISEKTI 1874
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREASLQAQLAQLEArlaELPELEAELRRLEREVEVAREL---YESLLQRLEEARLAEAL 383
|
....*.
gi 2217348663 1875 QISDIQ 1880
Cdd:COG3206 384 TVGNVR 389
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1282-1564 |
1.31e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.18 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1282 ELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKER-DNLKTIKEALEVKHDQLKEHIRETLAKIQESQSK 1360
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESsKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1361 QEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKdDLQRLQEVLQSESDQLKENI 1440
Cdd:COG5185 312 ESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEV-ELSKSSEELDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1441 KEIVAKHLETEEELKVAhccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQE 1520
Cdd:COG5185 391 ESLDEIPQNQRGYAQEI---LATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEE 467
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2217348663 1521 KVNELKQFKEHRKAK-DSALQSIESKMLELTNRLQESQEEIQIMI 1564
Cdd:COG5185 468 AYDEINRSVRSKKEDlNEELTQIESRVSTLKATLEKLRAKLERQL 512
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
1429-1753 |
1.32e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.90 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1429 LQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAindklqnkiqeiyEKEE 1508
Cdd:pfam19220 67 LRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLAA-------------ETEQ 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1509 QFNIKQisevqekvnELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMkrVQEALQIERdQLKENT 1588
Cdd:pfam19220 134 NRALEE---------ENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQ--AAELAELTR-RLAELE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1589 KEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLEnIETENIRltqilHENLEEMrsVTKERDDLRS 1668
Cdd:pfam19220 202 TQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERASLRMK-LEALTAR-----AAATEQL--LAEARNQLRD 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1669 VEETLKVERDQLKENLRETITRDLKIqEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKD-------LENSNAKLQ 1741
Cdd:pfam19220 274 RDEAIRAAERRLKEASIERDTLERRL-AGLEADLERRTQQFQEMQRARAELEERAEMLTKALAAkdaalerAEERIASLS 352
|
330
....*....|..
gi 2217348663 1742 EKIQELKANEHQ 1753
Cdd:pfam19220 353 DRIAELTKRFEV 364
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
824-952 |
1.41e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 824 NLSKEAQKFD---SSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLEnrdstlqtvEREKTLITEKLQQTLEEVK 900
Cdd:PRK00409 510 LIGEDKEKLNeliASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ---------EEEDKLLEEAEKEAQQAIK 580
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2217348663 901 TLTQEKDD-LKQLQESLQIERDQLKSdiHDTvnmnIDTQEQLRNALESLKQHQ 952
Cdd:PRK00409 581 EAKKEADEiIKELRQLQKGGYASVKA--HEL----IEARKRLNKANEKKEKKK 627
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
734-1066 |
1.53e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 734 LRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLE 813
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 814 ENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKtLITEKLQ 893
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE-AEQALDE 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 894 QTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHME 973
Cdd:COG4372 188 LLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAI 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 974 ENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIE 1053
Cdd:COG4372 268 LVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLL 347
|
330
....*....|...
gi 2217348663 1054 MTIENQEELRLLG 1066
Cdd:COG4372 348 VGLLDNDVLELLS 360
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1763-1896 |
1.64e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.42 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1763 ETQKKVSEMEQLKKQIKDqsltLSKLeienLNLAQKLHENLEEmkSVMKERDNLRRVE---ETLKLERDQLKESLQETKA 1839
Cdd:PRK09039 47 EISGKDSALDRLNSQIAE----LADL----LSLERQGNQDLQD--SVANLRASLSAAEaerSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348663 1840 RDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQ 1896
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1025-1230 |
1.66e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.73 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1025 QEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKL 1104
Cdd:pfam07888 41 QERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDAL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1105 -KEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKEL 1183
Cdd:pfam07888 121 lAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNS 200
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2217348663 1184 QKSFETERDHLRGYIReieatglQTKEELKIAHIHLKEHQETIDELR 1230
Cdd:pfam07888 201 LAQRDTQVLQLQDTIT-------TLTQKLTTAHRKEAENEALLEELR 240
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
817-973 |
1.69e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 817 RMNQEIVNLSKEAQKFDSSLGALKTELSyktqELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITE--KLQQ 894
Cdd:COG3206 202 RQKNGLVDLSEEAKLLLQQLSELESQLA----EARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEA 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 895 TLEEVKTLTQE--------KDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISE-- 964
Cdd:COG3206 278 ELAELSARYTPnhpdvialRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRle 357
|
170
....*....|..
gi 2217348663 965 ---EVSRNLHME 973
Cdd:COG3206 358 revEVARELYES 369
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1514-2304 |
1.71e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1514 QISEVQEKVNELKQFkeHRKAKDSALQSIeskmLELTNRLQESQEEIQIMIKEKEEMKRVQEALqieRDQLKENTKEIVA 1593
Cdd:pfam15921 86 QVKDLQRRLNESNEL--HEKQKFYLRQSV----IDLQTKLQEMQMERDAMADIRRRESQSQEDL---RNQLQNTVHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1594 KmkesqekeyqflkmtavnetqekmceiEHLKEQFetqkLNLENIETENIRLTQILHEN-LEEMRSVtkerddLRSVEET 1672
Cdd:pfam15921 157 A---------------------------KCLKEDM----LEDSNTQIEQLRKMMLSHEGvLQEIRSI------LVDFEEA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1673 lkverdqlkenlretitRDLKIQEELRIAHMHLKEQQETIDK-LRGIVSEKT---DKLSNMQKDLENSNAKLQEKIqELK 1748
Cdd:pfam15921 200 -----------------SGKKIYEHDSMSTMHFRSLGSAISKiLRELDTEISylkGRIFPVEDQLEALKSESQNKI-ELL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1749 ANEHQlITLKKDVNETQKKVSEMEQLKKQIKDQSLTL-SKLEIENlnlAQKLHENLEEMKsvmkerdNLRRVEETLKLER 1827
Cdd:pfam15921 262 LQQHQ-DRIEQLISEHEVEITGLTEKASSARSQANSIqSQLEIIQ---EQARNQNSMYMR-------QLSDLESTVSQLR 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1828 DQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKDRQNHQVKPEKRLL 1907
Cdd:pfam15921 331 SELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGN 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1908 SDGQQHLTESLREK---CSRIKELLKRYS-----EMDDHYECLNRLSLDLEKEIEFQKELSmrvkanlSLPYLQTKHIEK 1979
Cdd:pfam15921 411 SITIDHLRRELDDRnmeVQRLEALLKAMKsecqgQMERQMAAIQGKNESLEKVSSLTAQLE-------STKEMLRKVVEE 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1980 LfTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEMDF---IDEVEKQKELLIKIQHLQQDCDVpsrelrdLKL 2056
Cdd:pfam15921 484 L-TAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVdlkLQELQHLKNEGDHLRNVQTECEA-------LKL 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2057 NQNMDLHIEEILKDFSESEFPSIKTEFQQVLSNRKEMTQFLEEWLNTRFDIEKLKNGIQKENDRICQVNNFFNN---RII 2133
Cdd:pfam15921 556 QMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDlelEKV 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2134 AIMNESTEFEERSATISKEWEQDLKSLKE-KNE--KLFKNYQTLKTSLASGAQVNPTTQDNKNPHVTSRATQLttekiRE 2210
Cdd:pfam15921 636 KLVNAGSERLRAVKDIKQERDQLLNEVKTsRNElnSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSEL-----EQ 710
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 2211 LENSLHEAKESAMHKESKIIKMQKELEVTNDIIAKLQAKVHESNKCLEKTKETIQVLqdkvalgakpyKEEIEDLKMKLV 2290
Cdd:pfam15921 711 TRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL-----------KEEKNKLSQELS 779
|
810
....*....|....
gi 2217348663 2291 KIDLEKMKNAKEFE 2304
Cdd:pfam15921 780 TVATEKNKMAGELE 793
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1304-1505 |
1.78e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1304 ERLRLNEKFQESQEEIKS---------LTKERDNLKTIKEALEVKHDQLKEHIREtlakiQESQSKQEQSLNMKekdneT 1374
Cdd:PHA02562 195 QQIKTYNKNIEEQRKKNGeniarkqnkYDELVEEAKTIKAEIEELTDELLNLVMD-----IEDPSAALNKLNTA-----A 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1375 TKIVSEMEQFKpKDSALLRIEIE----MLGLS---KRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEI--VA 1445
Cdd:PHA02562 265 AKIKSKIEQFQ-KVIKMYEKGGVcptcTQQISegpDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLleLK 343
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217348663 1446 KHLETEE-ELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYE 1505
Cdd:PHA02562 344 NKISTNKqSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1533-2038 |
2.02e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1533 KAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIV------AKMKESQEKEYQFL 1606
Cdd:PRK01156 124 ISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISnidyleEKLKSSNLELENIK 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1607 KMTAVNETQEKMC--EIEHLKEQFETQKLNLENIETENIRLTQiLHENLEEMRSVTKERDDLRSVEETLKVERDQLKENL 1684
Cdd:PRK01156 204 KQIADDEKSHSITlkEIERLSIEYNNAMDDYNNLKSALNELSS-LEDMKNRYESEIKTAESDLSMELEKNNYYKELEERH 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1685 RETITRDLKIQEELRIAHMHLKEQQETIDK-LRGIVSEKTDKLSNMQK--DLENSNAKLQEKIQELKANEHQLITLKKDV 1761
Cdd:PRK01156 283 MKIINDPVYKNRNYINDYFKYKNDIENKKQiLSNIDAEINKYHAIIKKlsVLQKDYNDYIKKKSRYDDLNNQILELEGYE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1762 NETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKE-RDNLRRVE---ETLKLERDQLKESLQET 1837
Cdd:PRK01156 363 MDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEiNVKLQDISskvSSLNQRIRALRENLDEL 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1838 KaRDLEIQQEL------------KTARMLSKEHKETVDKLREKISEKTIQISDI---QKDLDKSKDELQKKDRQnhQVKP 1902
Cdd:PRK01156 443 S-RNMEMLNGQsvcpvcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIdekIVDLKKRKEYLESEEIN--KSIN 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1903 EKRLLSDGQQHLTEsLREKCSRIKELLKRYSEMDDHYECLNRLSLDlEKEIEFQKELSMR----VKANLSLPYLQTKHIE 1978
Cdd:PRK01156 520 EYNKIESARADLED-IKIKINELKDKHDKYEEIKNRYKSLKLEDLD-SKRTSWLNALAVIslidIETNRSRSNEIKKQLN 597
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1979 KLFTANQRCSMEFHRIMkklKYVLSYVTKIKEEQHESINKfemdfIDEVEKQKELLIKIQ 2038
Cdd:PRK01156 598 DLESRLQEIEIGFPDDK---SYIDKSIREIENEANNLNNK-----YNEIQENKILIEKLR 649
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1057-1267 |
2.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1057 ENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEksqqlqekqqqllnVQEEMSEMQKKINEIE 1136
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA--------------LEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1137 NLKNELKNKELTLEHMETERLELAQKLNE--------NYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQT 1208
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217348663 1209 KEELKIAHIHLKEHQETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQELL 1267
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLL---ARLEKELAELAAELAELQQEAEEL 225
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1644-1890 |
2.15e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 43.29 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1644 RLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRE-----------------TITRDLKIQEELRI------ 1700
Cdd:PRK04778 109 EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRElrksllanrfsfgpaldELEKQLENLEEEFSqfvelt 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1701 -------AHMHLKEQQETIDKLRgivsEKTDKLSNMQKDLENsnaKLQEKIQELKANEHQLITlKKDVNETQKKVSEMEQ 1773
Cdd:PRK04778 189 esgdyveAREILDQLEEELAALE----QIMEEIPELLKELQT---ELPDQLQELKAGYRELVE-EGYHLDHLDIEKEIQD 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1774 LKKQIKDQSLTLSKLEIENLN-LAQKLHENLEEMKSVM-KERDNLRRVEETLKLERDQLKESLQETKARDLEIQQ----- 1846
Cdd:PRK04778 261 LKEQIDENLALLEELDLDEAEeKNEEIQERIDQLYDILeREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRvkqsy 340
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2217348663 1847 -----ELKTARMLSKEHKET---VDKLREKISEKTIQISDIQKDLDKSKDEL 1890
Cdd:PRK04778 341 tlnesELESVRQLEKQLESLekqYDEITERIAEQEIAYSELQEELEEILKQL 392
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1709-1891 |
2.20e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1709 QETIDKLRGIVSEKTDKLSNMQK--DLENSNAKLQEKIQELKANEHQLITLKKDVNETQkkvSEMEQLKKQIKDQSLTLS 1786
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQknGLVDLSEEAKLLLQQLSELESQLAEARAELAEAE---ARLAALRAQLGSGPDALP 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1787 klEIENLNLAQKLHENLEEMKSvmKERDNLRRVEE------TLKLERDQLKESLQETKARDL-EIQQELKTARMLSKEHK 1859
Cdd:COG3206 258 --ELLQSPVIQQLRAQLAELEA--ELAELSARYTPnhpdviALRAQIAALRAQLQQEAQRILaSLEAELEALQAREASLQ 333
|
170 180 190
....*....|....*....|....*....|....*
gi 2217348663 1860 ETVDKLREKIS---EKTIQISDIQKDLDKSKDELQ 1891
Cdd:COG3206 334 AQLAQLEARLAelpELEAELRRLEREVEVARELYE 368
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
1136-1427 |
2.35e-03 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 43.50 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1136 ENLKNELKNKELTLEHMETERLELAQKLNENYEEvkSITKERKVLKElqksfETERDHLRGYIREIEatglqtkeeLKIA 1215
Cdd:PRK12903 657 DNLLRITHFKFSEKDFENYHKEELAQYLIEALNE--IYFKKRQVILD-----KIALNTFFESERYII---------LSAL 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1216 HIHLKEHQETIDELRRSV-----SEKTAQIINTQDLEKSHTKLQEEIPvlheeQELLPNVKEVSETQETMNELELLTEQS 1290
Cdd:PRK12903 721 DKYWQNHIDTMDKLRSGVnlvqySQKNPYQVYTEEGTKKFNILLQEIA-----YDVIVSLFNNPNAEKILIITEILSDGI 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1291 TTKDSTTLARIEMERLRLNEkfqesQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEK 1370
Cdd:PRK12903 796 NNSDINDRPQELIDQIIESE-----EERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINEN 870
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348663 1371 DNettkivsEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQE 1427
Cdd:PRK12903 871 KN-------EFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEK 920
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1740-1940 |
2.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1740 LQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIkdQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRV 1819
Cdd:COG4913 240 AHEALEDAREQIELLEPIRELAERYAAARERLAELEYLR--AALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1820 EETLKLERDQLKESLQETKARDLE-IQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDL----DKSKDELQKKD 1894
Cdd:COG4913 318 LDALREELDELEAQIRGNGGDRLEqLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFaalrAEAAALLEALE 397
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2217348663 1895 RQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYE 1940
Cdd:COG4913 398 EELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLL 443
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
720-874 |
2.61e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 720 LLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSN--YKSTDQEFQNF 797
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeYEALQKEIESL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348663 798 KTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSyktQELQEKTREVQERLNEMEQLKEQLENR 874
Cdd:COG1579 102 KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELD---EELAELEAELEELEAEREELAAKIPPE 175
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1738-1891 |
2.61e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1738 AKLQEKIQELKAnehqlitLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLeienlnlaQKLHENLEEMKSVMKERDNLR 1817
Cdd:COG4913 610 AKLAALEAELAE-------LEEELAEAEERLEALEAELDALQERREALQRL--------AEYSWDEIDVASAEREIAELE 674
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348663 1818 RVEETLKLERDQLKeslqetkardlEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQ 1891
Cdd:COG4913 675 AELERLDASSDDLA-----------ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
496-959 |
2.67e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 496 IESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNDLDEfealERKTKKDQENELSSKVELLREKEDQIKKLQEYIDS 575
Cdd:PRK01156 216 TLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYES----EIKTAESDLSMELEKNNYYKELEERHMKIINDPVY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 576 QKLENIKMDLSYsLESIEDPKQMKQTLFDAETVALDAKRESAFL---RSENLELKEKMKELATTYKQMENDIQLYQSQL- 651
Cdd:PRK01156 292 KNRNYINDYFKY-KNDIENKKQILSNIDAEINKYHAIIKKLSVLqkdYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLk 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 652 --EAKKKMQVDLEKELQSAFNEITKLTSL--IDGKVPKDLLCNL-----ELEGKITDLQKELNKEVEENEALREEVILLS 722
Cdd:PRK01156 371 siESLKKKIEEYSKNIERMSAFISEILKIqeIDPDAIKKELNEInvklqDISSKVSSLNQRIRALRENLDELSRNMEMLN 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 723 --------------------------ELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHK----ESRVQGLLEE 772
Cdd:PRK01156 451 gqsvcpvcgttlgeeksnhiinhyneKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKsineYNKIESARAD 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 773 IGKTKDDLATTQSNYKSTDQEFQNFKTLHM-DFEQKYKMVLEEN---------------ERMNQEIVNLSKEAQKFDSSL 836
Cdd:PRK01156 531 LEDIKIKINELKDKHDKYEEIKNRYKSLKLeDLDSKRTSWLNALavislidietnrsrsNEIKKQLNDLESRLQEIEIGF 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 837 GALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESL 916
Cdd:PRK01156 611 PDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKAL 690
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 2217348663 917 Q---IERDQLKSdIHDTVNMNIDTQEQ----LRNALESLKQHQETINTLK 959
Cdd:PRK01156 691 DdakANRARLES-TIEILRTRINELSDrindINETLESMKKIKKAIGDLK 739
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
612-1257 |
2.69e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 612 AKRESAFLRSENLELKekmkeLATTYKQMENDIQLYQSQLEAKKKMQVDL-------EKELQSAFNEITKLTSLIDGKVP 684
Cdd:pfam12128 244 TKLQQEFNTLESAELR-----LSHLHFGYKSDETLIASRQEERQETSAELnqllrtlDDQWKEKRDELNGELSAADAAVA 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 685 KD------------LLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLR--------KEIQDKSEE 744
Cdd:pfam12128 319 KDrselealedqhgAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRskikeqnnRDIAGIKDK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 745 LHIITSEKDKLFSEV-VHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFqNFKTLHMDFEQKYKMVLEEN----ERMN 819
Cdd:pfam12128 399 LAKIREARDRQLAVAeDDLQALESELREQLEAGKLEFNEEEYRLKSRLGEL-KLRLNQATATPELLLQLENFderiERAR 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 820 QEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVERE----------KTLIT 889
Cdd:pfam12128 478 EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKeapdweqsigKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 890 EKLQQT-LEEVKTLTQEKD---------DLKQLQ--------ESLQIERDQLKSDIHDtvnmnidtqeqlrnALESLKQH 951
Cdd:pfam12128 558 ELLHRTdLDPEVWDGSVGGelnlygvklDLKRIDvpewaaseEELRERLDKAEEALQS--------------AREKQAAA 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 952 QETINTLKSKIsEEVSRNLHMEENTGETKDEFQQKMVgiDKKQDLEAKNTQTLTAdvkdneiiEQQRKIFSLIQEKNELQ 1031
Cdd:pfam12128 624 EEQLVQANGEL-EKASREETFARTALKNARLDLRRLF--DEKQSEKDKKNKALAE--------RKDSANERLNSLEAQLK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1032 QMLESVIAEKEQLKTDLKENiemTIENQEELRLLGDELKKQ-----QEIVAQEKNHAIKKEG---ELSRTCDRLAEVEEK 1103
Cdd:pfam12128 693 QLDKKHQAWLEEQKEQKREA---RTEKQAYWQVVEGALDAQlallkAAIAARRSGAKAELKAletWYKRDLASLGVDPDV 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1104 LKEKSQQLQEKQQQLLNV---QEEMSEMQKKINEIENLKNElkNKELTLEHMETERLELAQKLNENYEEVKSITKErkvl 1180
Cdd:pfam12128 770 IAKLKREIRTLERKIERIavrRQEVLRYFDWYQETWLQRRP--RLATQLSNIERAISELQQQLARLIADTKLRRAK---- 843
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1181 kelqksFETERDHLRGyiREIEATGLQTKEELKIAHI-HLKEHQeTIDELRRSVSEKTAQIintQDLEKSHTKLQEEI 1257
Cdd:pfam12128 844 ------LEMERKASEK--QQVRLSENLRGLRCEMSKLaTLKEDA-NSEQAQGSIGERLAQL---EDLKLKRDYLSESV 909
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
901-1198 |
2.90e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 901 TLTQEKDD-LKQLQES--LQIErdQLKSDIHDtvnmnidtqEQLRNALESLKQHQETINTLKSKISEEvsrnlhmeentg 977
Cdd:PRK05771 13 TLKSYKDEvLEALHELgvVHIE--DLKEELSN---------ERLRKLRSLLTKLSEALDKLRSYLPKL------------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 978 ETKDEFQQKMvgidKKQDLEAkntqtlTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKtdLKENIEMTIE 1057
Cdd:PRK05771 70 NPLREEKKKV----SVKSLEE------LIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE--PWGNFDLDLS 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1058 NQEELRL-------LGDELKKQQEIVAQEKNHAIKKEGELSRTC------DRLAEVEEKLKeKSQQLQEKQQQLLNVQEE 1124
Cdd:PRK05771 138 LLLGFKYvsvfvgtVPEDKLEELKLESDVENVEYISTDKGYVYVvvvvlkELSDEVEEELK-KLGFERLELEEEGTPSEL 216
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1125 MSEMQKKINEIENLKNELKNKeltLEhmeterlELAQKLNE---NYEEVKSITKERKVLKELQKsfETER-DHLRGYI 1198
Cdd:PRK05771 217 IREIKEELEEIEKERESLLEE---LK-------ELAKKYLEellALYEYLEIELERAEALSKFL--KTDKtFAIEGWV 282
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
846-1085 |
3.06e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 846 KTQELQEKTREVQERLnemEQLKEQLENRDSTLQTVEREktliTEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKS 925
Cdd:PRK11281 67 QTLALLDKIDRQKEET---EQLKQQLAQAPAKLRQAQAE----LEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQN 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 926 DIHDTVNMNID-----TQ-EQLRNAL-ESLKQHQETINTLKS-KISEEVSRN-----LHMEENTGETKDEFQQK-MVGID 991
Cdd:PRK11281 140 AQNDLAEYNSQlvslqTQpERAQAALyANSQRLQQIRNLLKGgKVGGKALRPsqrvlLQAEQALLNAQNDLQRKsLEGNT 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 992 KKQDLEAK-------NTQTLTADVKD-NEIIEQQRkifsLIQEKNELQQMLESVIAEKEQ----LKTDLKENIEMT---I 1056
Cdd:PRK11281 220 QLQDLLQKqrdyltaRIQRLEHQLQLlQEAINSKR----LTLSEKTVQEAQSQDEAARIQanplVAQELEINLQLSqrlL 295
|
250 260 270
....*....|....*....|....*....|.
gi 2217348663 1057 ENQEEL-RLLGDELK-KQQEIVAQEKNHAIK 1085
Cdd:PRK11281 296 KATEKLnTLTQQNLRvKNWLDRLTQSERNIK 326
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1000-1213 |
3.12e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1000 NTQTLTADVKDNEIIEQ---QRKIFSLIQEKN-----ELQQMLESVIAEKEQLKTDLKE------NIEMTIENQEE-LRL 1064
Cdd:PHA02562 180 NQQIQTLDMKIDHIQQQiktYNKNIEEQRKKNgeniaRKQNKYDELVEEAKTIKAEIEEltdellNLVMDIEDPSAaLNK 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1065 LGDELKKQQEIVAQ-EKNHAIKKEGELSRTCDRLAEVEEKLKEKsqqlqekqqqllnVQEEMSEMQKKINEIENLKNELK 1143
Cdd:PHA02562 260 LNTAAAKIKSKIEQfQKVIKMYEKGGVCPTCTQQISEGPDRITK-------------IKDKLKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348663 1144 NKELTLEHMETERLELAQKLNENYE----EVKSITKERKVLKELQKSFETERDHLRGYIREIEATGlQTKEELK 1213
Cdd:PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKQslitLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIV-KTKSELV 399
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
805-1079 |
3.30e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 805 EQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVERE 884
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 885 KTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQ---IERDQLKSDIHDTVNMNIDTQEQLRNALESLKQhQETINTLKSK 961
Cdd:COG4372 110 AEELQEELEELQKERQDLEQQRKQLEAQIAELQseiAEREEELKELEEQLESLQEELAALEQELQALSE-AEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 962 ISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEK 1041
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270
....*....|....*....|....*....|....*...
gi 2217348663 1042 EQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQE 1079
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAA 306
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
1475-1583 |
3.42e-03 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 42.84 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1475 LSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFK---EHRKAKDSALQSIESKMLELTN 1551
Cdd:NF037998 639 LTNKEKLSSKLLLKIKKINDKIDLLKKKEENKEAKKNAKLIEKVKAKIKKLEQKItklKLNKKKSNKIIKIRWKKKDWIF 718
|
90 100 110
....*....|....*....|....*....|..
gi 2217348663 1552 RLQESQEEiqIMIKEKEEMKRVQEALQIERDQ 1583
Cdd:NF037998 719 FLKDNTDV--ILAIESEIEIQVIEKIKVKRNE 748
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1130-1497 |
3.61e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.82 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1130 KKINEIENLKNELKNKELTLEHMETERLELAQKlnenyEEVKSITKERKVLKElqkSFETERDHLRGYIREIEATGLQTK 1209
Cdd:pfam09731 121 KSEQEKEKALEEVLKEAISKAESATAVAKEAKD-----DAIQAVKAHTDSLKE---ASDTAEISREKATDSALQKAEALA 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1210 EELKIAHIHLKEHQET-----IDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVkEVSETQETMNELE 1284
Cdd:pfam09731 193 EKLKEVINLAKQSEEEaapplLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIV-FQQELVSIFPDII 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1285 L----LTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKsltkerdnlKTIKEALEVKHDQLKEHIRETLAKIQESQSK 1360
Cdd:pfam09731 272 PvlkeDNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREE---------KHIERALEKQKEELDKLAEELSARLEEVRAA 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1361 QEQSLNmKEKDNETTKIVSEMEQfkpkdsaLLRIEIEmlglskRLQESHDEmksvakekddlqRLQEVLQSESDQLKENI 1440
Cdd:pfam09731 343 DEAQLR-LEFEREREEIRESYEE-------KLRTELE------RQAEAHEE------------HLKDVLVEQEIELQREF 396
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217348663 1441 KEIVAKHLETEEELkvahcclkeQEETINELRVNLSEKETEISTIqKQLEAINDKLQ 1497
Cdd:pfam09731 397 LQDIKEKVEEERAG---------RLLKLNELLANLKGLEKATSSH-SEVEDENRKAQ 443
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
628-877 |
3.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 628 EKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkdllcnlELEGKITDLQKELNKE 707
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-----------ALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 708 VEENEALREEvilLSELKSLPSEVERLRKEIQDKSEELHIITSEKdklFSEVVHKESRVQGLLEEIGKTKDDLATTQSNY 787
Cdd:COG4942 89 EKEIAELRAE---LEAQKEELAELLRALYRLGRQPPLALLLSPED---FLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 788 KSTDQEFQNFKtlhmdfeQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQL 867
Cdd:COG4942 163 AALRAELEAER-------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
250
....*....|
gi 2217348663 868 KEQLENRDST 877
Cdd:COG4942 236 AAAAAERTPA 245
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1532-1893 |
3.77e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.52 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1532 RKAKdSALQSIESKMLELTNRLQESQEEIQimikekeEMKRVQEALQIERDQLKENTKEIvakMKESQEKEYQFlkMTAV 1611
Cdd:PRK04778 101 RKAK-HEINEIESLLDLIEEDIEQILEELQ-------ELLESEEKNREEVEQLKDLYREL---RKSLLANRFSF--GPAL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1612 NETQEKMCEIEHLKEQFETQKLNLENIETENIRLTqiLHENLEEMRSVTKERDDLrsVEETLKVERDQLKEnLRETItrd 1691
Cdd:PRK04778 168 DELEKQLENLEEEFSQFVELTESGDYVEAREILDQ--LEEELAALEQIMEEIPEL--LKELQTELPDQLQE-LKAGY--- 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1692 lkiqEELRIAHMHLKEQQ--ETIDKLRGIVSEKTDKLSNMQ-KDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKV 1768
Cdd:PRK04778 240 ----RELVEEGYHLDHLDieKEIQDLKEQIDENLALLEELDlDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTL 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1769 SEMEQlkkQIKDQSLTLsKLEIENLNLAQKL-HENLEEMKSVMKERDNLRRVeetlkleRDQLKESLQETKARDLEIQQE 1847
Cdd:PRK04778 316 PDFLE---HAKEQNKEL-KEEIDRVKQSYTLnESELESVRQLEKQLESLEKQ-------YDEITERIAEQEIAYSELQEE 384
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2217348663 1848 LKTArmlsKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKK 1893
Cdd:PRK04778 385 LEEI----LKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
803-923 |
4.05e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 803 DFEQKYKMVLEEN-------ERMNQEIVNLSKEAqkfdSSLGALKTELSYKTQELQEKTREVQERLNE-------MEQLK 868
Cdd:PRK04863 541 EFCKRLGKNLDDEdeleqlqEELEARLESLSESV----SEARERRMALRQQLEQLQARIQRLAARAPAwlaaqdaLARLR 616
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2217348663 869 EQLENRDSTLQTVerektliTEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL 923
Cdd:PRK04863 617 EQSGEEFEDSQDV-------TEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1264-1931 |
5.17e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1264 QELLPNVKEVSETQETM----NELELLTE-----QSTTKDSTTLARIEMERLRLN-----EKFQESQEEIKSLTKERDNL 1329
Cdd:COG4913 228 DALVEHFDDLERAHEALedarEQIELLEPirelaERYAAARERLAELEYLRAALRlwfaqRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1330 KTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKivSEMEQfkpkDSALLRIEIEMLGLSkrLQESH 1409
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLEREL--EERER----RRARLEALLAALGLP--LPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1410 DEMKSVAKEkddLQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELR---VNLSEKETEIstiq 1486
Cdd:COG4913 380 EEFAALRAE---AAALLEALEEELEALEEALAEAEAALRDLRRE-------LRELEAEIASLErrkSNIPARLLAL---- 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1487 kqLEAINDKLQNKIQ---------EIYEKEEQ-------------FNI----KQISEVQEKVNELKQ------FKEHRKA 1534
Cdd:COG4913 446 --RDALAEALGLDEAelpfvgeliEVRPEEERwrgaiervlggfaLTLlvppEHYAAALRWVNRLHLrgrlvyERVRTGL 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1535 KDSALQSIESKML--ELTNRLQESQEEIQIMIKEK---------EEMKRVQEALQIERdQLKENtKEIVAKMKESQEKEY 1603
Cdd:COG4913 524 PDPERPRLDPDSLagKLDFKPHPFRAWLEAELGRRfdyvcvdspEELRRHPRAITRAG-QVKGN-GTRHEKDDRRRIRSR 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1604 QFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETEnIRLTQILHENLEEMRSVTKERDDLRSVEETLkVERDQLKEN 1683
Cdd:COG4913 602 YVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAE-LDALQERREALQRLAEYSWDEIDVASAEREI-AELEAELER 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1684 LRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNE 1763
Cdd:COG4913 680 LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAAL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1764 TQKKVSEM-EQLKKQIKDQSLTLSKLE--IENL---------NLAQKLHENLEEMKSVMKERDNLRRVEetLKLERDQLK 1831
Cdd:COG4913 760 GDAVERELrENLEERIDALRARLNRAEeeLERAmrafnrewpAETADLDADLESLPEYLALLDRLEEDG--LPEYEERFK 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1832 ESLQETKARDLE-IQQELKTARmlsKEHKETVDKLREKIS------EKTIQIsDIQKDLDKSKDELQKKDRQnhqvkpek 1904
Cdd:COG4913 838 ELLNENSIEFVAdLLSKLRRAI---REIKERIDPLNDSLKripfgpGRYLRL-EARPRPDPEVREFRQELRA-------- 905
|
730 740
....*....|....*....|....*...
gi 2217348663 1905 rlLSDGQQHLTESLREK-CSRIKELLKR 1931
Cdd:COG4913 906 --VTSGASLFDEELSEArFAALKRLIER 931
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1302-1584 |
5.39e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1302 EMERLrLNEKFQESQEEIKSLTKERDNlktIKEALEVKHDQLKEhiretlakiQESQSKQeqslNMKEKDNETTKIVSEM 1381
Cdd:PHA02562 167 EMDKL-NKDKIRELNQQIQTLDMKIDH---IQQQIKTYNKNIEE---------QRKKNGE----NIARKQNKYDELVEEA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1382 EQFKPkdsallriEIEMLglskrlqesHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIvAKHLETEEELKVAHCCL 1461
Cdd:PHA02562 230 KTIKA--------EIEEL---------TDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF-QKVIKMYEKGGVCPTCT 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1462 KEQEETINELrvnlSEKETEISTIQKQLEAINDKlqnkIQEIYEKEEQFNiKQISEVQEKVNELKQFKEHRKAKDSALQS 1541
Cdd:PHA02562 292 QQISEGPDRI----TKIKDKLKELQHSLEKLDTA----IDELEEIMDEFN-EQSKKLLELKNKISTNKQSLITLVDKAKK 362
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2217348663 1542 IESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQL 1584
Cdd:PHA02562 363 VKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1709-1859 |
6.16e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 6.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1709 QETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQikdqsltlskl 1788
Cdd:PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE----------- 569
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217348663 1789 eienlNLAQKLHENLEEMKSVmkerdnlrrVEETLKLERDQLKESLQETKARDL-EIQQELKTARMLSKEHK 1859
Cdd:PRK00409 570 -----EAEKEAQQAIKEAKKE---------ADEIIKELRQLQKGGYASVKAHELiEARKRLNKANEKKEKKK 627
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
719-1075 |
6.88e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 6.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 719 ILLSELKSLPSEVERLRKEIQDKsEELHIITSEKDKLFSEVVHKesrVQGLLEEIGKTKDDLATTQSNYKSTDqefqNFK 798
Cdd:PRK10929 7 FLMAWLLSWGAYAATAPDEKQIT-QELEQAKAAKTPAQAEIVEA---LQSALNWLEERKGSLERAKQYQQVID----NFP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 799 TLHMDFEQKyKMVLEENER---MNQEIVNLSKEAQKFDSSLgalkTELSYKTQELQEKTREVQERLNEMEQL----KEQL 871
Cdd:PRK10929 79 KLSAELRQQ-LNNERDEPRsvpPNMSTDALEQEILQVSSQL----LEKSRQAQQEQDRAREISDSLSQLPQQqteaRRQL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 872 ENRDSTLQTVEREKTLITE---KLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQ-EQLRNALES 947
Cdd:PRK10929 154 NEIERRLQTLGTPNTPLAQaqlTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYlQALRNQLNS 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 948 LKQhQETINTLKS--KISEE-------VSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNT----QTLtadvkdNEII 1014
Cdd:PRK10929 234 QRQ-REAERALESteLLAEQsgdlpksIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTlqvrQAL------NTLR 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1015 EQQ-------------RKIFSLIQEKNELQQmLESVIA-------------EKEQLKTDLKENIEMTIENQEElRLLGDE 1068
Cdd:PRK10929 307 EQSqwlgvsnalgealRAQVARLPEMPKPQQ-LDTEMAqlrvqrlryedllNKQPQLRQIRQADGQPLTAEQN-RILDAQ 384
|
....*..
gi 2217348663 1069 LKKQQEI 1075
Cdd:PRK10929 385 LRTQREL 391
|
|
| ATG17_like |
pfam04108 |
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ... |
1320-1528 |
7.01e-03 |
|
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs.
Pssm-ID: 427715 [Multi-domain] Cd Length: 360 Bit Score: 41.22 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1320 KSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQfkpkdsallrIEIEML 1399
Cdd:pfam04108 112 DSVEILRDALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELES----------LEEEMA 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1400 GLSKRLQESHDE-MKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSek 1478
Cdd:pfam04108 182 SLLESLTNHYDQcVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYERLQKLLEQKNSLIDELLSALQ-- 259
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1479 etEISTIQKQLEAINDKLQnKIQEIYEKEEQFNIKQISEVQEKVNELKQF 1528
Cdd:pfam04108 260 --LIAEIQSRLPEYLAALK-EFEERWEEEKETIEDYLSELEDLREFYEGF 306
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
812-923 |
7.44e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 7.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 812 LEENERMNQEIVNLSKE-----AQKFDSS--LGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVE-- 882
Cdd:COG3096 524 LEQRLRQQQNAERLLEEfcqriGQQLDAAeeLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARApa 603
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 883 -----------REKT--------LITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL 923
Cdd:COG3096 604 wlaaqdalerlREQSgealadsqEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1620-1791 |
7.60e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 7.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1620 EIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETI----------- 1688
Cdd:COG4942 42 ELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLralyrlgrqpp 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1689 ----------TRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQ----L 1754
Cdd:COG4942 122 lalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAErqklL 201
|
170 180 190
....*....|....*....|....*....|....*..
gi 2217348663 1755 ITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIE 1791
Cdd:COG4942 202 ARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
516-1140 |
8.08e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 516 QLRTEKEEMELKLKEKNDLDEfeALERKTKKDQENELSSKVELLREKEDQI-KKLQEYIDS-QKLENIKMDLSYSLESIE 593
Cdd:TIGR00618 264 QLRARIEELRAQEAVLEETQE--RINRARKAAPLAAHIKAVTQIEQQAQRIhTELQSKMRSrAKLLMKRAAHVKQQSSIE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 594 DPKQMKQTLFDAETVALDAKRESAFLR---SENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFN 670
Cdd:TIGR00618 342 EQRRLLQTLHSQEIHIRDAHEVATSIReisCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRD 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 671 EITKLTSLIDGKVPK---DLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHI 747
Cdd:TIGR00618 422 LQGQLAHAKKQQELQqryAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQE 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 748 ITSEKDKLFSEVVHK----------ESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENER 817
Cdd:TIGR00618 502 EPCPLCGSCIHPNPArqdidnpgplTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNR 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 818 MNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEME--QLKEQLENRDSTLQTV--EREKTLITEKLQ 893
Cdd:TIGR00618 582 SKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDvrLHLQQCSQELALKLTAlhALQLTLTQERVR 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 894 QTLEEVKTLTQEKDDLKQLQES-LQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHM 972
Cdd:TIGR00618 662 EHALSIRVLPKELLASRQLALQkMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDAL 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 973 EENTGETKDEFQQKmvgidkkqdleakntqtLTADVKDNEIIEQQRKIfsLIQEKNELQQMLESVIAEKEQLKTDLKENI 1052
Cdd:TIGR00618 742 NQSLKELMHQARTV-----------------LKARTEAHFNNNEEVTA--ALQTGAELSHLAAEIQFFNRLREEDTHLLK 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1053 EMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQllnvQEEMSEMQKKI 1132
Cdd:TIGR00618 803 TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQE----QAKIIQLSDKL 878
|
....*...
gi 2217348663 1133 NEIENLKN 1140
Cdd:TIGR00618 879 NGINQIKI 886
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1301-1518 |
8.17e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 8.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1301 IEMERLR-LNEKFQESQEEIKSLTKERDNLKTIKEALEV----KHDQLKEHIRETLAKIQESQSKQEQSLNmkEKDNETT 1375
Cdd:PRK05771 40 LSNERLRkLRSLLTKLSEALDKLRSYLPKLNPLREEKKKvsvkSLEELIKDVEEELEKIEKEIKELEEEIS--ELENEIK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1376 KIVSEMEQFKP-KDsalLRIEIEMLGLSKRLQ--------------ESHDEMKSVAKEKDDLQRLQEVLQSESDQLKEnI 1440
Cdd:PRK05771 118 ELEQEIERLEPwGN---FDLDLSLLLGFKYVSvfvgtvpedkleelKLESDVENVEYISTDKGYVYVVVVVLKELSDE-V 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217348663 1441 KEIVAKHLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEqfNIKQISEV 1518
Cdd:PRK05771 194 EEELKKLGFERLELEE----EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLE--IELERAEA 265
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1645-1904 |
8.18e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 8.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1645 LTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTD 1724
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1725 KLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQ--SLTLSKLEIENLNLAQKLHEN 1802
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEElaALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1803 LEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKD 1882
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260
....*....|....*....|..
gi 2217348663 1883 LDKSKDELQKKDRQNHQVKPEK 1904
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEE 290
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1725-1934 |
8.43e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1725 KLSNMQKDLEnsnaKLQEKIQELKAnehQLITLKKDVNETQKKvsemEQLKKQIKDQSLTLSKLEIENLNLAQKLHEnlE 1804
Cdd:COG1196 180 KLEATEENLE----RLEDILGELER---QLEPLERQAEKAERY----RELKEELKELEAELLLLKLRELEAELEELE--A 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1805 EMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELktarmlsKEHKETVDKLREKISEKTIQISDIQKDLD 1884
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-------YELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1885 KSKDELQKKDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSE 1934
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1517-1779 |
8.51e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.66 E-value: 8.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1517 EVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMK 1596
Cdd:COG1340 16 KIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLNELREELD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1597 ESQEKEYQFLKMTAVNETQEKmcEIEHLKEQFETQKLNLENiETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE 1676
Cdd:COG1340 96 ELRKELAELNKAGGSIDKLRK--EIERLEWRQQTEVLSPEE-EKELVEKIKELEKELEKAKKALEKNEKLKELRAELKEL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1677 RDQLKEnlretitrdlkiqeelriAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLIT 1756
Cdd:COG1340 173 RKEAEE------------------IHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIE 234
|
250 260
....*....|....*....|...
gi 2217348663 1757 LKKDVNETQKKVSEMEQLKKQIK 1779
Cdd:COG1340 235 LQKELRELRKELKKLRKKQRALK 257
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1476-1601 |
8.71e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 8.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1476 SEKETEISTIQKQLEAiNDKLQNKIQEIyekEEQFNIKQiSEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQE 1555
Cdd:PRK12704 47 AKKEAEAIKKEALLEA-KEEIHKLRNEF---EKELRERR-NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQ 121
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1556 SQEEIQIMIKEKEEMKRVQ-------------EALQIERDQLKENTK-EIVAKMKESQEK 1601
Cdd:PRK12704 122 KQQELEKKEEELEELIEEQlqelerisgltaeEAKEILLEKVEEEARhEAAVLIKEIEEE 181
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
554-890 |
8.89e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 8.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 554 SKVELL---REKEDQIKKLQEyidSQKLEnikmdlsyslesIEDPKQMKQTLF--DAETVALDAKRESAFLRSEnLELKE 628
Cdd:PRK05771 7 KKVLIVtlkSYKDEVLEALHE---LGVVH------------IEDLKEELSNERlrKLRSLLTKLSEALDKLRSY-LPKLN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 629 KMKELATTYKqmendiqlYQSQLEAKKkmqvDLEKELQSAFNEITKLTSLIDgkvpkdllcnlELEGKITDLQKELNkev 708
Cdd:PRK05771 71 PLREEKKKVS--------VKSLEELIK----DVEEELEKIEKEIKELEEEIS-----------ELENEIKELEQEIE--- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 709 eenealreeviLLSELKSLPSEVERLRkeiqdKSEELHIITSEKDKLFSEVVHKESrVQGLLEEIGKTKDD----LATTQ 784
Cdd:PRK05771 125 -----------RLEPWGNFDLDLSLLL-----GFKYVSVFVGTVPEDKLEELKLES-DVENVEYISTDKGYvyvvVVVLK 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 785 SNYKSTDQEFQNFktlhmDFEqkyKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQErlnEM 864
Cdd:PRK05771 188 ELSDEVEEELKKL-----GFE---RLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYE---YL 256
|
330 340
....*....|....*....|....*.
gi 2217348663 865 EQLKEQLEnrdSTLQTVEREKTLITE 890
Cdd:PRK05771 257 EIELERAE---ALSKFLKTDKTFAIE 279
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
848-1136 |
8.95e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.43 E-value: 8.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 848 QELQEKTREVQERLNEMEQLKE-QLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSD 926
Cdd:PLN02939 106 EAIAAIDNEQQTNSKDGEQLSDfQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDAR 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 927 IHDTVNMNIDTQ---EQLRNALESLKQHQETINTLKSKISEEVSrnLHMEENtgetkdefqqkmvgIDKKQDLEAKNTQT 1003
Cdd:PLN02939 186 IKLAAQEKIHVEileEQLEKLRNELLIRGATEGLCVHSLSKELD--VLKEEN--------------MLLKDDIQFLKAEL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217348663 1004 LtadvkdnEIIEQQRKIFSLIQEKNELQ---QMLES--VIAEKEQLKTDLKEnIEMTIENQEELRLLGDELKKQQE--IV 1076
Cdd:PLN02939 250 I-------EVAETEERVFKLEKERSLLDaslRELESkfIVAQEDVSKLSPLQ-YDCWWEKVENLQDLLDRATNQVEkaAL 321
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217348663 1077 AQEKNHAIKkegelsrtcDRLAEVEEKLKEksqqlqekqqqlLNVQEEMSE----MQKKINEIE 1136
Cdd:PLN02939 322 VLDQNQDLR---------DKVDKLEASLKE------------ANVSKFSSYkvelLQQKLKLLE 364
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