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Conserved domains on  [gi|2413409771|ref|XP_052542240|]
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G1/S-specific cyclin-E1 [Tympanuchus pallidicinctus]

Protein Classification

G1/S-specific cyclin-E( domain architecture ID 15334740)

G1/S-specific cyclin-E is essential for the control of the cell cycle at the G1/S (start) transition

Gene Ontology:  GO:0000082|GO:0044772|GO:0016538|GO:0097134

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYCLIN_CCNE1_rpt1 cd20579
first cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control ...
 100-236 5.27e-104

first cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control of the cell cycle at the G1/S (start) transition. It interacts with CDK2 protein kinase to form a serine/threonine kinase holoenzyme complex. CCNE1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


:

Pssm-ID: 410282 [Multi-domain]  Cd Length: 137  Bit Score: 303.72  E-value: 5.27e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 100 SPLPILGWANRDDVWKNMINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQN 179
Cdd:cd20579     1 SPLPVLGWANRDEVWKNMLNKDKTYLRDKNFLQKHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQEN 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2413409771 180 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNW 236
Cdd:cd20579    81 VVKTRLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALKW 137
CYCLIN_CCNE1_rpt2 cd20581
second cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control ...
 240-353 2.64e-80

second cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control of the cell cycle at the G1/S (start) transition. It interacts with CDK2 protein kinase to form a serine/threonine kinase holoenzyme complex. CCNE1 contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


:

Pssm-ID: 410284  Cd Length: 114  Bit Score: 242.38  E-value: 2.64e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 240 PLTVVSWLNIYMQVAYLNELYEVLLPQYPQQIFVQIAELLDLCVLDIGCLEYTYGVLAASALYHFSSSELMQKVSGYEWC 319
Cdd:cd20581     1 PLTIVSWLNVYMQVAYLNELQEVLLPQYPQEIFIQIAELLDLCVLDICCLEFPYGVLAASALYHFSSSELMQKVSGYKWC 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2413409771 320 EIEECVKWMVPFAMAIREVGSSKLKHFRGIAPED 353
Cdd:cd20581    81 EIEECVKWMVPFAMAIREVGSSKLKFFKGVAIED 114
 
Name Accession Description Interval E-value
CYCLIN_CCNE1_rpt1 cd20579
first cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control ...
 100-236 5.27e-104

first cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control of the cell cycle at the G1/S (start) transition. It interacts with CDK2 protein kinase to form a serine/threonine kinase holoenzyme complex. CCNE1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410282 [Multi-domain]  Cd Length: 137  Bit Score: 303.72  E-value: 5.27e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 100 SPLPILGWANRDDVWKNMINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQN 179
Cdd:cd20579     1 SPLPVLGWANRDEVWKNMLNKDKTYLRDKNFLQKHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQEN 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2413409771 180 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNW 236
Cdd:cd20579    81 VVKTRLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALKW 137
CYCLIN_CCNE1_rpt2 cd20581
second cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control ...
 240-353 2.64e-80

second cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control of the cell cycle at the G1/S (start) transition. It interacts with CDK2 protein kinase to form a serine/threonine kinase holoenzyme complex. CCNE1 contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410284  Cd Length: 114  Bit Score: 242.38  E-value: 2.64e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 240 PLTVVSWLNIYMQVAYLNELYEVLLPQYPQQIFVQIAELLDLCVLDIGCLEYTYGVLAASALYHFSSSELMQKVSGYEWC 319
Cdd:cd20581     1 PLTIVSWLNVYMQVAYLNELQEVLLPQYPQEIFIQIAELLDLCVLDICCLEFPYGVLAASALYHFSSSELMQKVSGYKWC 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2413409771 320 EIEECVKWMVPFAMAIREVGSSKLKHFRGIAPED 353
Cdd:cd20581    81 EIEECVKWMVPFAMAIREVGSSKLKFFKGVAIED 114
Cyclin_N pfam00134
Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 112-239 4.58e-57

Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain.


Pssm-ID: 459686 [Multi-domain]  Cd Length: 127  Bit Score: 183.10  E-value: 4.58e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 112 DVWKNMINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMAtQQNVVKTLLQLIGIS 191
Cdd:pfam00134   1 DIFQYLRELELKYLPKPDYMDQQPDINPKMRAILIDWLVEVHEKFKLLPETLYLAVNYLDRFLS-KKSVPKNKLQLVGVT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2413409771 192 SLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNWNLN 239
Cdd:pfam00134  80 CLFIAAKYEEIYPPTVEDLVYITDNAYTREEILRMERLILETLNFDLS 127
COG5024 COG5024
Cyclin [Cell division and chromosome partitioning];
117-239 9.39e-27

Cyclin [Cell division and chromosome partitioning];


Pssm-ID: 227357 [Multi-domain]  Cd Length: 440  Bit Score: 111.02  E-value: 9.39e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 117 MINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMAtQQNVVKTLLQLIGISSLFIA 196
Cdd:COG5024   188 LLKLELIDLPNPNYLIKQSLYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLS-SRVVSLEKYQLVGISALFIA 266

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2413409771 197 AKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNWNLN 239
Cdd:COG5024   267 SKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVLDFNIS 309
CYCLIN smart00385
domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and ...
 147-232 1.61e-20

domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.


Pssm-ID: 214641 [Multi-domain]  Cd Length: 83  Bit Score: 84.95  E-value: 1.61e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771  147 DWLMEVCEVYKLHRETFYLAQDFFDRFMaTQQNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDgaCTEDEILSM 226
Cdd:smart00385   1 DFLRRVCKALNLDPETLNLAVNLLDRFL-SDYKFLKYSPSLIAAAALYLASKTEETPPWTKELVHYTGY--FTEEEILRM 77


                   ....*.
gi 2413409771  227 ELIIMK 232
Cdd:smart00385  78 ERLLLE 83
Cyclin_C pfam02984
Cyclin, C-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 242-360 1.51e-13

Cyclin, C-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the C-terminal domain.


Pssm-ID: 397230  Cd Length: 119  Bit Score: 66.88  E-value: 1.51e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 242 TVVSWLNIYMQVAYLNELYEVL-LPQYpqqifvqiaeLLDLCVLDIGCLEYTYGVLAASALYHFSS-------SELMQKV 313
Cdd:pfam02984   2 TPLSFLRRFSKAADYLHDLELRtLAKY----------LLELTLLDYDFLKYPPSLIAAAAVYLARKtlnspewTETLEHY 71

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2413409771 314 SGYEWCEIEECVKWMVPFAMAIREvgSSKLKHFRGIAPEDLHNIQTH 360
Cdd:pfam02984  72 TGYSEEDLKPCVKLLLELLLNAPS--SKLQAVRRKYSSSKFMKVSTL 116
 
Name Accession Description Interval E-value
CYCLIN_CCNE1_rpt1 cd20579
first cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control ...
 100-236 5.27e-104

first cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control of the cell cycle at the G1/S (start) transition. It interacts with CDK2 protein kinase to form a serine/threonine kinase holoenzyme complex. CCNE1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410282 [Multi-domain]  Cd Length: 137  Bit Score: 303.72  E-value: 5.27e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 100 SPLPILGWANRDDVWKNMINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQN 179
Cdd:cd20579     1 SPLPVLGWANRDEVWKNMLNKDKTYLRDKNFLQKHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQEN 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2413409771 180 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNW 236
Cdd:cd20579    81 VVKTRLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALKW 137
CYCLIN_CCNE_rpt1 cd20519
first cyclin box found in G1/S-specific cyclin-E (CCNE) family; The CCNE family includes two ...
 106-236 5.58e-90

first cyclin box found in G1/S-specific cyclin-E (CCNE) family; The CCNE family includes two E-type cyclins, CCNE1 and CCNE2. CCNE1 is essential for the control of the cell cycle at the G1/S (start) transition. It interacts with CDK2 protein kinase to form a serine/threonine kinase holoenzyme complex. CCNE2 is essential for the control of the cell cycle at the late G1 and early S phase. It interacts with the CDK2 (in vivo) and CDK3 (in vitro) protein kinases to form a serine/threonine kinase holoenzyme complexes. Members of this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410223  Cd Length: 131  Bit Score: 267.64  E-value: 5.58e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 106 GWANRDDVWKNMINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQNVVKTLL 185
Cdd:cd20519     1 SWADSEEVWDLMLKKEELYKRDRDFLNRHPSLQPRMRAILLDWLMEVCEVYRLHRETFYLAVDFVDRYLSTQTNVPKTQL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2413409771 186 QLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNW 236
Cdd:cd20519    81 QLIGITCLFIAAKLEEIYPPKLSEFAYVTDGACTEDEILTMELIILKALNW 131
CYCLIN_CCNE2_rpt1 cd20580
first cyclin box found in G1/S-specific cyclin-E2 (CCNE2); CCNE2 is essential for the control ...
 100-236 2.63e-82

first cyclin box found in G1/S-specific cyclin-E2 (CCNE2); CCNE2 is essential for the control of the cell cycle at the late G1 and early S phase. It interacts with the CDK2 (in vivo) and CDK3 (in vitro) protein kinases to form a serine/threonine kinase holoenzyme complexes. CCNE2 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410283 [Multi-domain]  Cd Length: 137  Bit Score: 248.22  E-value: 2.63e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 100 SPLPILGWANRDDVWKNMINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQN 179
Cdd:cd20580     1 SPLPELSWGNSKDVWLNMLKKESKYVHDKHFLQLHPALQPKMRSILLDWLLEVCEVYTLHRETFYLAQDFFDRFMLTQKN 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2413409771 180 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNW 236
Cdd:cd20580    81 INKSMLQLIGITSLFIASKLEEIYPPKLHEFAYVTDGACSEDDILDMELIILKALKW 137
CYCLIN_CCNE1_rpt2 cd20581
second cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control ...
 240-353 2.64e-80

second cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control of the cell cycle at the G1/S (start) transition. It interacts with CDK2 protein kinase to form a serine/threonine kinase holoenzyme complex. CCNE1 contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410284  Cd Length: 114  Bit Score: 242.38  E-value: 2.64e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 240 PLTVVSWLNIYMQVAYLNELYEVLLPQYPQQIFVQIAELLDLCVLDIGCLEYTYGVLAASALYHFSSSELMQKVSGYEWC 319
Cdd:cd20581     1 PLTIVSWLNVYMQVAYLNELQEVLLPQYPQEIFIQIAELLDLCVLDICCLEFPYGVLAASALYHFSSSELMQKVSGYKWC 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2413409771 320 EIEECVKWMVPFAMAIREVGSSKLKHFRGIAPED 353
Cdd:cd20581    81 EIEECVKWMVPFAMAIREVGSSKLKFFKGVAIED 114
Cyclin_N pfam00134
Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 112-239 4.58e-57

Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain.


Pssm-ID: 459686 [Multi-domain]  Cd Length: 127  Bit Score: 183.10  E-value: 4.58e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 112 DVWKNMINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMAtQQNVVKTLLQLIGIS 191
Cdd:pfam00134   1 DIFQYLRELELKYLPKPDYMDQQPDINPKMRAILIDWLVEVHEKFKLLPETLYLAVNYLDRFLS-KKSVPKNKLQLVGVT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2413409771 192 SLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNWNLN 239
Cdd:pfam00134  80 CLFIAAKYEEIYPPTVEDLVYITDNAYTREEILRMERLILETLNFDLS 127
CYCLIN_CCNB1-like_rpt1 cd20507
first cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two ...
 111-235 1.67e-46

first cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two B-type cyclins, CCNB1 and CCNB2, both of which are essential for the control of the cell cycle at the G2/M (mitosis) transition. Members in this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410211 [Multi-domain]  Cd Length: 130  Bit Score: 155.77  E-value: 1.67e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 111 DDVWKNMINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQnVVKTLLQLIGI 190
Cdd:cd20507     6 KDIYKYLRQLEKKYAIDPDYLSGQPEITERMRAILVDWLVEVHLKFKLLPETLYLTVNIIDRYLSKKQ-VPRKKLQLVGV 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2413409771 191 SSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALN 235
Cdd:cd20507    85 TALLIASKYEEIYPPEIKDFVYITDNAYTREEILQMERDILKTLD 129
CYCLIN_CCNA_rpt1 cd20504
first cyclin box found in cyclin-A (CCNA) family; The CCNA family includes two A-type cyclins, ...
 111-235 7.00e-42

first cyclin box found in cyclin-A (CCNA) family; The CCNA family includes two A-type cyclins, CCNA1 and CCNA2. CCNA1 may primarily function in the control of the germline meiotic cell cycle and additionally in the control of mitotic cell cycle in some somatic cells. CCNA2 controls both the G1/S and the G2/M transition phases of the cell cycle. Members in this family contain two cyclin boxes. The model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410208 [Multi-domain]  Cd Length: 128  Bit Score: 143.93  E-value: 7.00e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 111 DDVWKNMINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMaTQQNVVKTLLQLIGI 190
Cdd:cd20504     4 DDIYEYLRESELKHRPKPDYMRKQPDINPSMRSILVDWLVEVAEEYKLVPETLYLAVNYIDRFL-SQMSVLRSKLQLVGT 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2413409771 191 SSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALN 235
Cdd:cd20504    83 ACMFIAAKYEEIYPPEVEEFVYITDDTYTKKQVLRMEHLVLKVLS 127
CYCLIN_CCNE_rpt2 cd20520
second cyclin box found in G1/S-specific cyclin-E (CCNE) family; The CCNE family includes two ...
 240-338 8.54e-40

second cyclin box found in G1/S-specific cyclin-E (CCNE) family; The CCNE family includes two E-type cyclins, CCNE1 and CCNE2. CCNE1 is essential for the control of the cell cycle at the G1/S (start) transition. It interacts with CDK2 protein kinase to form a serine/threonine kinase holoenzyme complex. CCNE2 is essential for the control of the cell cycle at the late G1 and early S phase. It interacts with the CDK2 (in vivo) and CDK3 (in vitro) protein kinases to form serine/threonine kinase holoenzyme complexes. Members in this family contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410224 [Multi-domain]  Cd Length: 105  Bit Score: 137.41  E-value: 8.54e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 240 PLTVVSWLNIYMQVAYLNELY-----EVLLPQYPQQIFVQIAELLDLCVLDIGCLEYTYGVLAASALYH-FSSSELMQKV 313
Cdd:cd20520     1 PPTPNSWLNLYLQLAQLNPPPkendsAFLLPQYSLDRFVRAAQLLDLCILDIGSLQFSYSVLAASALYLvSPDDEAIEQV 80

                          90       100
                  ....*....|....*....|....*
gi 2413409771 314 SGYEWCEIEECVKWMVPFAMAIREV 338
Cdd:cd20520    81 TGYSWEQLAPCVEWMTPFAEVLEEE 105
CYCLIN_CCNE2_rpt2 cd20582
second cyclin box found in G1/S-specific cyclin-E2 (CCNE2); CCNE2 is essential for the control ...
 240-338 9.50e-40

second cyclin box found in G1/S-specific cyclin-E2 (CCNE2); CCNE2 is essential for the control of the cell cycle at the late G1 and early S phase. It interacts with the CDK2 (in vivo) and CDK3 (in vitro) protein kinases to form serine/threonine kinase holoenzyme complexes. CCNE2 contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410285  Cd Length: 99  Bit Score: 137.21  E-value: 9.50e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 240 PLTVVSWLNIYMQVAYLNELYEVLLPQYPQQIFVQIAELLDLCVLDIGCLEYTYGVLAASALYHFSSSELMQKVSGYEWC 319
Cdd:cd20582     1 PVTIISWLNLYLQVDSLKDHPNVLLPQYSQETFIQIAQLLDLCILDINSLDFQYRVLAAAALCHFTSFEVVKKASGLEWD 80

                          90
                  ....*....|....*....
gi 2413409771 320 EIEECVKWMVPFAMAIREV 338
Cdd:cd20582    81 CISECVNWMVPFVRTVREC 99
CYCLIN_CLBs_yeast_rpt1 cd20568
first cyclin box found in yeast B-type cyclins; This subfamily includes Saccharomyces ...
 111-236 4.48e-34

first cyclin box found in yeast B-type cyclins; This subfamily includes Saccharomyces cerevisiae G2/mitotic-specific cyclins 1-4 (ScCLB1-4), S-phase entry cyclins 5-6 (ScCLB5-6), and Schizosaccharomyces pombe G2/mitotic-specific cyclins, cig1, cig2 and cdc13. ScCLB1-4 are essential for the control of the cell cycle at the G2/M (mitosis) transition. They interact with the CDC2 protein kinase to form maturation promoting factor (MPF). ScCLB5-6 interact with CDC28 and are involved in DNA replication in Saccharomyces cerevisiae. ScCLB5 is required for efficient progression through S phase and possibly for the normal progression through meiosis. ScCLB6 is involved in G1/S and or S phase progression. Cig1 is required for efficient passage of the G1/S transition. Cig2 and cdc13 are essential for the control of the cell cycle at the G2/M and G1/S (mitosis) transitions. They interact with the cdc2 protein kinase to form MPF. Members in this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410271  Cd Length: 134  Bit Score: 123.56  E-value: 4.48e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 111 DDVWKNMINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMAtqQNVVK-TLLQLIG 189
Cdd:cd20568    10 PEIFEYLRELELKTLPNPNYMDDQKELRWKMRGILVDWLVEVHEKFRLLPETLFLAVNIIDRFLS--KRVVSlNKLQLVG 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2413409771 190 ISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNW 236
Cdd:cd20568    88 ISALFIASKYEEVNSPSIKNFAYMTDGAYTVEDILRAERYMLNTLEF 134
CYCLIN_CCNB3_rpt1 cd20508
first cyclin box found in G2/mitotic-specific cyclin-B3 (CCNB3) and similar proteins; CCNB3 is ...
 112-235 1.37e-32

first cyclin box found in G2/mitotic-specific cyclin-B3 (CCNB3) and similar proteins; CCNB3 is a mitotic B-type cyclin that promotes the metaphase-anaphase transition. It controls anaphase onset independent of spindle assembly checkpoint in meiotic oocytes. CCNB3 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410212 [Multi-domain]  Cd Length: 142  Bit Score: 119.67  E-value: 1.37e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 112 DVWKNMINKEETYVRDKlYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQqNVVKTLLQLIGIS 191
Cdd:cd20508    19 DIFDYMKEREEKFVVPD-YLEKQTELTPSMRAILVDWLVEVQENFELNHETLYLAVKLVDLYLSKK-VVKKEKLQLLGAT 96

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2413409771 192 SLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALN 235
Cdd:cd20508    97 AILIASKFDERCPPCVDDFLYICDDAYTREELLKMEREILKTLD 140
CYCLIN_CCNA2_rpt1 cd20561
first cyclin box found in cyclin-A2 (CCNA2) and similar proteins; CCNA2 controls both the G1/S ...
 130-237 9.03e-32

first cyclin box found in cyclin-A2 (CCNA2) and similar proteins; CCNA2 controls both the G1/S and the G2/M transition phases of the cell cycle. It is significantly over-expressed in various cancer types, and can be used as a prognostic biomarker for estrogen receptor positive (ER+) breast cancer and tamoxifen resistance. CCNA2 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410264 [Multi-domain]  Cd Length: 131  Bit Score: 117.47  E-value: 9.03e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 130 YMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQqNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQ 209
Cdd:cd20561    25 YMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSM-SVLRGKLQLVGTAAMLLASKFEEIYPPEVAE 103

                          90       100
                  ....*....|....*....|....*...
gi 2413409771 210 FAYVTDGACTEDEILSMELIIMKALNWN 237
Cdd:cd20561   104 FVYITDDTYTKKQVLRMEHLVLKVLTFD 131
CYCLIN_CCNA1_rpt1 cd20560
first cyclin box found in cyclin-A1 (CCNA1); CCNA1 may primarily function in the control of ...
 130-234 9.83e-30

first cyclin box found in cyclin-A1 (CCNA1); CCNA1 may primarily function in the control of the germline meiotic cell cycle and additionally in the control of mitotic cell cycle in some somatic cells. CCNA1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410263  Cd Length: 163  Bit Score: 113.01  E-value: 9.83e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 130 YMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATqQNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQ 209
Cdd:cd20560    57 YMRKQPDITTGMRTILVDWLVEVGEEYKLQTETLYLAVNYLDRFLSC-MSVLRGKLQLVGTAAILLASKYEEIYPPEVDE 135

                          90       100
                  ....*....|....*....|....*
gi 2413409771 210 FAYVTDGACTEDEILSMELIIMKAL 234
Cdd:cd20560   136 FVYITDDTYTKKQLLRMEHLLLKVL 160
CYCLIN_AtCycB-like_rpt1 cd20567
first cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins; ...
 130-236 1.37e-28

first cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins; Plant B-type cyclins (CycBs) correspond to a group of G2/mitotic-specific cyclins that are functionally linked to S- and M-phases of the mitotic cycle, which predicts their involvement also in meiosis. CycBs associate with their partner cyclin-dependent kinases (CDKs) to trigger the kinase activity. They contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410270  Cd Length: 147  Bit Score: 109.36  E-value: 1.37e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 130 YMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQnVVKTLLQLIGISSLFIAAKLEEIYPPKLHQ 209
Cdd:cd20567    42 YMSQQPDINEKMRAILIDWLIEVHLKFELMPETLYLTVNLIDRFLSVKQ-VPRKELQLVGVTAMLIASKYEEIWAPEVND 120

                          90       100
                  ....*....|....*....|....*..
gi 2413409771 210 FAYVTDGACTEDEILSMELIIMKALNW 236
Cdd:cd20567   121 FVYISDNAYTRKQILVMEKTMLNTLEF 147
CYCLIN_AtCycA_like_rpt1 cd20562
first cyclin box found in Arabidopsis thaliana A-type cyclins (CycAs) and similar proteins; ...
 139-234 1.22e-27

first cyclin box found in Arabidopsis thaliana A-type cyclins (CycAs) and similar proteins; Plant A-type cyclins (CycAs) correspond to a group of G2/mitotic-specific cyclins that are functionally linked to S- and M-phases of the mitotic cycle, which predicts their involvement also in meiosis. CycAs associate with their partner cyclin-dependent kinases (CDKs) to trigger the kinase activity. They contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410265  Cd Length: 136  Bit Score: 106.34  E-value: 1.22e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 139 PKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMaTQQNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGAC 218
Cdd:cd20562    39 PSMRGILVDWLVEVAEEYKLVPDTLYLTVSYIDRFL-SGNYVNRQRLQLLGVSCMLIASKYEEICAPQVEEFCYITDNTY 117

                          90
                  ....*....|....*.
gi 2413409771 219 TEDEILSMELIIMKAL 234
Cdd:cd20562   118 TKQEVLEMEIDVLNAL 133
CYCLIN_CCNO_rpt1 cd20536
first cyclin box found in cyclin-O (CCNO) and similar proteins; CCNO is specifically required ...
 141-234 5.71e-27

first cyclin box found in cyclin-O (CCNO) and similar proteins; CCNO is specifically required for generation of multiciliated cells, possibly by promoting a cell cycle state compatible with centriole amplification and maturation. It acts downstream of MCIDAS (multiciliate differentiation and DNA synthesis associated cell cycle protein) to promote mother centriole amplification and maturation in preparation for apical docking. CCNO is involved in the activation of cyclin-dependent kinase 2. CCNO contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410239  Cd Length: 93  Bit Score: 103.18  E-value: 5.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 141 MRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQqNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTE 220
Cdd:cd20536     1 MRAKLISWLIPVHRHFNLSQETLFLAVNILDRFLATT-PVARDCFQLLGVTSLLIACKQEEIYPPEVKDLLALCCGAYTR 79

                          90
                  ....*....|....
gi 2413409771 221 DEILSMELIIMKAL 234
Cdd:cd20536    80 EQICNLECIILTKL 93
COG5024 COG5024
Cyclin [Cell division and chromosome partitioning];
117-239 9.39e-27

Cyclin [Cell division and chromosome partitioning];


Pssm-ID: 227357 [Multi-domain]  Cd Length: 440  Bit Score: 111.02  E-value: 9.39e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 117 MINKEETYVRDKLYMQRHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMAtQQNVVKTLLQLIGISSLFIA 196
Cdd:COG5024   188 LLKLELIDLPNPNYLIKQSLYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLS-SRVVSLEKYQLVGISALFIA 266

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2413409771 197 AKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNWNLN 239
Cdd:COG5024   267 SKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVLDFNIS 309
CYCLIN_CCND_rpt1 cd20515
first cyclin box found in cyclin-D (CCND) family; The CCND family includes three ...
 109-237 3.68e-25

first cyclin box found in cyclin-D (CCND) family; The CCND family includes three mitogen-induced D-type cyclins, CCND1, CCND2 and CCND3, which function as regulatory subunits of the cyclin-dependent kinases CDK4 and CDK6, that drive progression through the G1 phase of the cell cycle. Members in this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410219  Cd Length: 150  Bit Score: 100.07  E-value: 3.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 109 NRDDVWKNMINKEETYVRDKLY---MQRHplLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMAtQQNVVKTLL 185
Cdd:cd20515    22 LDDRVLQNLLSLEERYLPSASYfkcVQTE--IQPFMRKMVTTWMLEVCEEQNCEEEVFPLAVNYLDRFLS-LVPIRKSQL 98

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2413409771 186 QLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNWN 237
Cdd:cd20515    99 QLLGAVCLFLASKLKETIPLTAEKLCIYTDNSITLQELLDWELLVLTKLKWD 150
CYCLIN_CCNB1_rpt1 cd20565
first cyclin box found in G2/mitotic-specific cyclin-B1 (CCNB1); CCNB1 is essential for the ...
 141-236 9.42e-24

first cyclin box found in G2/mitotic-specific cyclin-B1 (CCNB1); CCNB1 is essential for the control of the cell cycle at the G2/M (mitosis) transition. It is required for embryo development. Over-expression of human CCNB1 has been found in numerous cancers and has been associated with tumor aggressiveness. CCNB1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410268 [Multi-domain]  Cd Length: 129  Bit Score: 95.72  E-value: 9.42e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 141 MRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMatQQNVV-KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACT 219
Cdd:cd20565    35 MRAILIDWLVQVQMKFRLLQETMYMTVAIIDRFL--QNNPVpKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYT 112

                          90
                  ....*....|....*..
gi 2413409771 220 EDEILSMELIIMKALNW 236
Cdd:cd20565   113 KHQIRQMEMKILRALDF 129
CYCLIN_CCNB2_rpt1 cd20566
first cyclin box found in G2/mitotic-specific cyclin-B2 (CCNB2) and similar proteins; CCNB2 is ...
 140-236 2.55e-22

first cyclin box found in G2/mitotic-specific cyclin-B2 (CCNB2) and similar proteins; CCNB2 is essential for the control of the cell cycle at the G2/M (mitosis) transition. It is required for progression through meiosis. CCNB2 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410269 [Multi-domain]  Cd Length: 133  Bit Score: 91.85  E-value: 2.55e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 140 KMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQnVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACT 219
Cdd:cd20566    38 RMRAILVDWLVQVHSRFQLLQETLYMCVAIMDRFLQVQP-VSRKKLQLVGVTALLLASKYEEMYSPEIGDFVYITDNAYT 116

                          90
                  ....*....|....*..
gi 2413409771 220 EDEILSMELIIMKALNW 236
Cdd:cd20566   117 KAQIREMEMLILKELNF 133
CYCLIN_CCND1_rpt1 cd20573
first cyclin box found in G1/S-specific cyclin-D1 (CCND1); CCND1, also called B-cell lymphoma ...
 111-237 7.35e-22

first cyclin box found in G1/S-specific cyclin-D1 (CCND1); CCND1, also called B-cell lymphoma 1 protein (BCL-1), or BCL-1 oncogene, or PRAD1 oncogene, is a regulatory component of the cyclin D1-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family, including RB1. The complex also regulates the cell-cycle during G(1)/S transition. It is an important cell cycle regulatory protein involved in carcinogenesis of various human cancers. CCND1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410276  Cd Length: 149  Bit Score: 91.19  E-value: 7.35e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 111 DDVWKNMINKEETYVRDKLY---MQRHPLlqPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQnVVKTLLQL 187
Cdd:cd20573    23 DRVLQTMLKAEETCLPSVSYfkcVQKEIL--PSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSVEP-TKKSRLQL 99

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2413409771 188 IGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNWN 237
Cdd:cd20573   100 LGATCMFLASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLVLNKLKWD 149
CYCLIN_CNTD2 cd20542
cyclin box found in Cyclin N-terminal domain-containing protein 2 (CNTD2) and similar proteins; ...
 142-238 2.98e-21

cyclin box found in Cyclin N-terminal domain-containing protein 2 (CNTD2) and similar proteins; CNTD2 is an atypical cyclin upregulated in human cancer tissues. It promotes cell proliferation and migration, as well as increases tumor growth in vivo. It can function as a prognostic factor and drug target. CNTD2 contains one cyclin box. The cyclin box is a protein binding domain.


Pssm-ID: 410245 [Multi-domain]  Cd Length: 96  Bit Score: 87.38  E-value: 2.98e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 142 RTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMaTQQNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTED 221
Cdd:cd20542     1 RAILVDWLVQVQEHLELSTQTLHLAVALLDRYL-SRQKISLSLLQLLGITCLFIACKFEERFPPEVATLCYLTDDSYSKK 79

                          90
                  ....*....|....*..
gi 2413409771 222 EILSMELIIMKALNWNL 238
Cdd:cd20542    80 QVLRMERRVLRRLRFDL 96
CYCLIN smart00385
domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and ...
 147-232 1.61e-20

domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.


Pssm-ID: 214641 [Multi-domain]  Cd Length: 83  Bit Score: 84.95  E-value: 1.61e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771  147 DWLMEVCEVYKLHRETFYLAQDFFDRFMaTQQNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDgaCTEDEILSM 226
Cdd:smart00385   1 DFLRRVCKALNLDPETLNLAVNLLDRFL-SDYKFLKYSPSLIAAAALYLASKTEETPPWTKELVHYTGY--FTEEEILRM 77


                   ....*.
gi 2413409771  227 ELIIMK 232
Cdd:smart00385  78 ERLLLE 83
CYCLIN_CCND2_rpt1 cd20574
first cyclin box found in G1/S-specific cyclin-D2 (CCND2); CCND2 is a regulatory component of ...
 98-237 1.37e-19

first cyclin box found in G1/S-specific cyclin-D2 (CCND2); CCND2 is a regulatory component of the cyclin D2-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family, including RB1, and regulates the cell-cycle during G(1)/S transition. It is a critical mediator of exercise-induced cardiac hypertrophy. It also acts as a regulator of cell cycle proteins affecting SAMHD1-mediated HIV-1 restriction in non-proliferating macrophages. CCND2 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410277  Cd Length: 150  Bit Score: 84.66  E-value: 1.37e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771  98 RSSPLPILGWANRddVWKNMINKEETYVRDKLYMQ-RHPLLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMAT 176
Cdd:cd20574    13 RALPDPNLLYDDR--VLQNLLTIEERYLPQCSYFKcVQKDIQPFMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAV 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2413409771 177 QQnVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNWN 237
Cdd:cd20574    91 VP-TRKCHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWN 150
CYCLIN_CCND3_rpt1 cd20575
first cyclin box found in G1/S-specific cyclin-D3 (CCND3) and similar proteins; CCND3 is a ...
 113-237 7.16e-19

first cyclin box found in G1/S-specific cyclin-D3 (CCND3) and similar proteins; CCND3 is a regulatory component of the cyclin D3-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family, including RB1, and regulates the cell-cycle during G(1)/S transition. In skeletal muscle, CCND3 plays a unique function in controlling the proliferation/differentiation balance of myogenic progenitor cells. CCND3 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410278  Cd Length: 150  Bit Score: 82.73  E-value: 7.16e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 113 VWKNMINKEETYVRDKLYMQ---RHplLQPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQnVVKTLLQLIG 189
Cdd:cd20575    26 VLQNLLRLEERYVPRVSYFQcvqRE--IKPYMRKMLAYWMLEVCEEQKCEEEVFPLAMNYVDRYLSCVP-TRKAQLQLLG 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2413409771 190 ISSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALNWN 237
Cdd:cd20575   103 AVCMLLASKLRETTPLTIEKLCIYTDNSISPRQLLDWEILVLGKLKWD 150
CYCLIN_CCNJ-like_rpt1 cd20528
first cyclin box found in cyclin-J (CCNJ) family; The CCNJ family includes two cyclins, CCNJ ...
 138-236 2.17e-15

first cyclin box found in cyclin-J (CCNJ) family; The CCNJ family includes two cyclins, CCNJ and CCNJ-like. CCNJ may regulate the cell cycle or transcription. Members of this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410231 [Multi-domain]  Cd Length: 103  Bit Score: 71.48  E-value: 2.17e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 138 QPKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMaTQQNVVKTLLQLIGISSLFIAAKLEEIYP--PKLHQF-AYVT 214
Cdd:cd20528     3 QLHLRRYLVDWLAVVSERLKLSDTTLHLAVYLLDRFM-DRYDISEDQLHLVALTCLLLAAKFEELDDniPKISDLnRYLC 81

                          90       100
                  ....*....|....*....|..
gi 2413409771 215 DGACTEDEILSMELIIMKALNW 236
Cdd:cd20528    82 NSVYSKQEYLQMELLILEFFQW 103
CYCLIN_CCNI-like cd20526
cyclin box found in cyclin-I (CCNI) and similar proteins; CCNI is an atypical cyclin because ...
 148-238 1.32e-14

cyclin box found in cyclin-I (CCNI) and similar proteins; CCNI is an atypical cyclin because it is most abundant in post-mitotic cells. It is involved in various biological processes, such as cell survival, angiogenesis, cell differentiation, and cell cycle progression. CCNI contains a typical cyclin box near the N-terminus and a PEST sequence near the C-terminus. The cyclin box is a protein binding domain.


Pssm-ID: 410230  Cd Length: 99  Bit Score: 69.26  E-value: 1.32e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 148 WLMEVCEVYKLHRETFYLAQDFFDRFMATQQNVVKtLLQLIGISSLFIAAKLEE----IypPKLHQFAYVTDGACTEDEI 223
Cdd:cd20526     8 WLAELNSQFKFYPETFALAVSILDRFLASVKARPK-YLRCIAISCLFLAAKTNEedevI--PSTKDLVRVSKCGCSVAEV 84

                          90
                  ....*....|....*
gi 2413409771 224 LSMELIIMKALNWNL 238
Cdd:cd20526    85 LRMERIILDKLHWDL 99
Cyclin_C pfam02984
Cyclin, C-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 242-360 1.51e-13

Cyclin, C-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the C-terminal domain.


Pssm-ID: 397230  Cd Length: 119  Bit Score: 66.88  E-value: 1.51e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 242 TVVSWLNIYMQVAYLNELYEVL-LPQYpqqifvqiaeLLDLCVLDIGCLEYTYGVLAASALYHFSS-------SELMQKV 313
Cdd:pfam02984   2 TPLSFLRRFSKAADYLHDLELRtLAKY----------LLELTLLDYDFLKYPPSLIAAAAVYLARKtlnspewTETLEHY 71

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2413409771 314 SGYEWCEIEECVKWMVPFAMAIREvgSSKLKHFRGIAPEDLHNIQTH 360
Cdd:pfam02984  72 TGYSEEDLKPCVKLLLELLLNAPS--SKLQAVRRKYSSSKFMKVSTL 116
CYCLIN_vCyC_rpt1 cd20517
first cyclin box found in viral cyclin (v-cyclin); v-Cyclin modulates host cell cycle ...
 141-236 1.84e-13

first cyclin box found in viral cyclin (v-cyclin); v-Cyclin modulates host cell cycle progression and apoptotic signaling pathways. It forms an active kinase complex with cellular CDK6, a cellular cyclin-dependent kinase known to interact with cellular type D cyclins. v-Cyclin belongs to Cyclin D subfamily. It contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410221  Cd Length: 99  Bit Score: 66.05  E-value: 1.84e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 141 MRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQnVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACTE 220
Cdd:cd20517     5 NRKILLTWMFLVCESFELDKNVFPLAVSLLDRLLLKKQ-GTKETLQKTGAACLLIASKIRTVKPITVSKLTYLSCDCFTN 83

                          90
                  ....*....|....*.
gi 2413409771 221 DEILSMELIIMKALNW 236
Cdd:cd20517    84 LELINQEKDILEALKW 99
CYCLIN_AtCycD-like_rpt1 cd20543
first cyclin box found in plant cyclin-delta family; This subfamily is composed of plant delta ...
 142-236 1.93e-12

first cyclin box found in plant cyclin-delta family; This subfamily is composed of plant delta family cyclins, including a group of G1/S-specific D-type cyclins from Arabidopsis thaliana which may activate the cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion. Members of this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410246  Cd Length: 99  Bit Score: 63.11  E-value: 1.93e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 142 RTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQ--QNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFA-YVTDGAC 218
Cdd:cd20543     2 RNEAIDWILKVRSRYGFGPLTAYLAVNYLDRFLSSYdlPKDKPWMLQLLAVACLSLAAKMEETDVPLLVDLQvEEPKYVF 81

                          90
                  ....*....|....*...
gi 2413409771 219 TEDEILSMELIIMKALNW 236
Cdd:cd20543    82 EAKTIQRMELLVLSTLEW 99
CYCLIN_SF cd00043
Cyclin box fold superfamily; The cyclin box is a protein binding domain that functions in ...
 145-229 2.34e-12

Cyclin box fold superfamily; The cyclin box is a protein binding domain that functions in cell-cycle and transcriptional control. It is about 100 amino acids in length, composed of five helices, and is present in cyclins, transcription initiation factor IIB (TFIIB), and retinoblastoma tumour suppressor protein (Rb). Cyclins consist of 8 classes of cell cycle regulators that function as regulatory subunits of cyclin-dependent kinases (CDKs), which are serine/threonine kinases. The catalytic activities of CDKs are modulated not only by their interactions with cyclins but also by CDK inhibitors (CKIs). CDKs, cyclins and CKIs play key roles in transcription, epigenetic regulation, metabolism, stem cell self-renewal, neuronal functions, and spermatogenesis. TFIIB is a transcription factor that binds the TATA box. Members in this superfamily contain one or two copies of the cyclin box.


Pssm-ID: 410207 [Multi-domain]  Cd Length: 82  Bit Score: 62.43  E-value: 2.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 145 LLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQNVVKTlLQLIGISSLFIAAKLEEIyPPKLHQFAYVTDgaCTEDEIL 224
Cdd:cd00043     2 AVDFIRRLCSKLGLPEEVLELAIELLDRFLSKGLLLGRS-PELIAAACLYLACKLEEL-PRTLKEIAKVSG--VSEKELR 77


                  ....*
gi 2413409771 225 SMELI 229
Cdd:cd00043    78 KAEKE 82
CYCLIN_CCNF_rpt1 cd20521
first cyclin box found in G2/mitotic-specific cyclin-F (CCNF) and similar proteins; CCNF, also ...
 139-234 9.86e-12

first cyclin box found in G2/mitotic-specific cyclin-F (CCNF) and similar proteins; CCNF, also termed F-box only protein 1 (FBXO1), is a substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of CP110 during G2 phase, thereby acting as an inhibitor of centrosome reduplication. It is the largest among all cyclins and oscillates in the cell cycle like other cyclins. CCNF contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410225  Cd Length: 95  Bit Score: 60.79  E-value: 9.86e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 139 PKMRTILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQnVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGAC 218
Cdd:cd20521     1 DTMRYILVDWLVEVATMKDFSSLTLHVAVSCVDRYLMVRK-VPRSKLQLLGIACMVIATRFLGKDILTIREAAWLTDNTY 79

                          90
                  ....*....|....*.
gi 2413409771 219 TEDEILSMELIIMKAL 234
Cdd:cd20521    80 KYEDVVRMMGEIVAAL 95
CYCLIN_ScCLN_like cd20559
cyclin box found in Saccharomyces cerevisiae G1/S-specific cyclins (ScCLNs) and similar ...
 145-237 4.31e-09

cyclin box found in Saccharomyces cerevisiae G1/S-specific cyclins (ScCLNs) and similar proteins; ScCLNs, including ScCLN1-3, are essential for the control of the cell cycle at the G1/S (start) transition in Saccharomyces. ScCLN1 and ScCLN2 interact with the CDC28 protein kinase to form maturation promoting factor (MPF). ScCLN3 may be an upstream activator of the G1 cyclins that directly initiate G1/S transition. This family also includes Schizosaccharomyces pombe cyclin puc1, which contributes to negative regulation of the timing of sexual development in fission yeast, and functions at the transition between cycling and non-cycling cells. It interacts with protein kinase A. Members of this family contain one cyclin box. The cyclin box is a protein binding domain.


Pssm-ID: 410262 [Multi-domain]  Cd Length: 95  Bit Score: 53.54  E-value: 4.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 145 LLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQQnVVKTLLQLIGISSLFIAAKLEEIYP--PKLHQFAYVTDGACTEDE 222
Cdd:cd20559     2 LLDFLFELHVELRLSPQTFFLSVNLIDRYCSKRI-VLKKHYQLVGCTCLWIASKFWESKArvPLLSELSKMCCNSYGEEL 80

                          90
                  ....*....|....*
gi 2413409771 223 ILSMELIIMKALNWN 237
Cdd:cd20559    81 FIQMEMHILNTLNWD 95
CYCLIN_CCNH_rpt1 cd20524
first cyclin box found in cyclin-H (CCNH) and similar proteins; CCNH, also called ...
 149-238 7.18e-09

first cyclin box found in cyclin-H (CCNH) and similar proteins; CCNH, also called MO15-associated protein, p34, or p37, is normally associated with the cyclin-dependent kinase cdk7, the catalytic subunit of the CDK-activating kinase (CAK) enzymatic complex. CCNH contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410228  Cd Length: 150  Bit Score: 54.14  E-value: 7.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 149 LMEVCEVYKLHRETFYLAQDFFDRFmATQQNVVKTLLQLIGISSLFIAAKLEEIYPPkLHQFAYVTDGA-CTEDEILSME 227
Cdd:cd20524    62 LLEFCRAFKLPDSVLATALTYFKRF-YLKNSVMEYHPKEIMLTCLYLACKVEEFNIS-IDQFVGNIKESeKTAEIILEYE 139

                          90
                  ....*....|.
gi 2413409771 228 LIIMKALNWNL 238
Cdd:cd20524   140 LLLLQGLNFHL 150
CYCLIN_CCNG2 cd20584
cyclin box found in cyclin-G2 (CCNG2) and similar proteins; CCNG2 may play a role in growth ...
 161-235 9.25e-06

cyclin box found in cyclin-G2 (CCNG2) and similar proteins; CCNG2 may play a role in growth regulation and in negative regulation of cell cycle progression. It has been identified as a tumor suppressor in several cancers. CCNG2 contains one cyclin box. The cyclin box is a protein binding domain.


Pssm-ID: 410287  Cd Length: 96  Bit Score: 44.07  E-value: 9.25e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2413409771 161 ETFYLAQDFFDRFMATQQnVVKTLLQLIGISSLFIAAKL--EEIYPPKLHQFAYVTDGACTEDEILSMELIIMKALN 235
Cdd:cd20584    21 ETFVLAVNILDRFLALMK-VKPKHLSCIGICCFHLAARVveEECNIPSSHDLIRISQCKCTVSDLKRMEKIISEKLH 96
CYCLIN_CCNG cd20523
cyclin box found in the cyclin-G (CCNG) family; The CCNG family includes two cyclins, CCNG1 ...
 153-234 1.32e-05

cyclin box found in the cyclin-G (CCNG) family; The CCNG family includes two cyclins, CCNG1 and CCNG2. CCNG1 is the only cyclin that has either positive or negative effects on cell growth. It is associated with G2/M phase arrest in response to DNA damage. It is also involved in the development of human carcinoma. CCNG2 may play a role in growth regulation and in negative regulation of cell cycle progression. It has been identified as a tumor suppressor in several cancers. Members of this family contain one cyclin box. The cyclin box is a protein binding domain.


Pssm-ID: 410227  Cd Length: 94  Bit Score: 43.50  E-value: 1.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 153 CEVYKLHRETFYLAQDFFDRFMAtqqnVVKT---LLQLIGISSLFIAAKL--EEIYPPKLHQFAYVTDGACTEDEILSME 227
Cdd:cd20523    12 HRFYGFSPETFALAVNLLDRFLS----KVKVkpkHLACITVSCFHIAIKSveEDQNIPSAEDLIRISQCGCTAADLMRME 87


                  ....*..
gi 2413409771 228 LIIMKAL 234
Cdd:cd20523    88 GIILEKL 94
CYCLIN_CCNO-like_rpt2 cd20537
second cyclin box found in cyclin-O (CCNO) and similar proteins; This subfamily is composed of ...
 242-326 2.20e-04

second cyclin box found in cyclin-O (CCNO) and similar proteins; This subfamily is composed of CCNO and similar proteins including Schizosaccharomyces pombe meiosis-specific cyclin rem1, Drosophila melanogaster G2/mitotic-specific cyclin-A (CCNA), and Candida albicans G1/S-specific cyclin CCN1, among others. Rem1 is required for pre-meiotic DNA synthesis and S phase progression. CCNA is essential for the control of the cell cycle at the G2/M (mitosis) transition. CCN1 is essential for the control of the cell cycle at the G1/S (start) transition and for maintenance of filamentous growth. CCNO is specifically required for generation of multiciliated cells, possibly by promoting a cell cycle state compatible with centriole amplification and maturation. It is involved in the activation of cyclin-dependent kinase 2. Members of this subfamily contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410240 [Multi-domain]  Cd Length: 91  Bit Score: 39.98  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 242 TVVSWLNIYMQVAYLNELYEVLLpQYpqqifvqiaeLLDLCVLDIGCLEYTYGVLAASALY--------HFSSSELMQKV 313
Cdd:cd20537     2 TPLSFLRRYLSLLGLDEKVRHLA-RY----------LLELSLLDYEFLKYRPSLIAAAALYlarkilgePPPSPQLLQLV 70

                          90
                  ....*....|...
gi 2413409771 314 SGYEWCEIEECVK 326
Cdd:cd20537    71 TGYSENDLQECAK 83
Cyt_c_Oxidase_IV cd00922
Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 94-242 4.62e-03

Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.


Pssm-ID: 238462  Cd Length: 136  Bit Score: 37.25  E-value: 4.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771  94 VASTRSSPLPILgwANRDDVWKNMIN-KEETYVRDKLYmQRHpllqpkmrtiLLDWL-MEVCEVYKLHRETFylaQDFFD 171
Cdd:cd00922     2 VVGYGANSLPTY--ADIPDRPLPMIRfRELSAEIKALR-EKE----------KGDWKqLTLEEKKALYRISF---GETGP 65

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2413409771 172 RFMAT---QQNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAyvtdgacteDEILSMELIIMKALNWnlNPLT 242
Cdd:cd00922    66 EMNAPtgeWKTVFGGVLAFIGITGVIFGLQRAFVYGPKPHTFT---------EEWQEAQLERMLDMKV--NPIT 128
CYCLIN_CCNG1 cd20583
cyclin box found in cyclin-G1 (CCNG1) and similar proteins; CCNG1 is the only cyclin that has ...
 149-236 6.55e-03

cyclin box found in cyclin-G1 (CCNG1) and similar proteins; CCNG1 is the only cyclin that has either positive or negative effects on cell growth. It is associated with G2/M phase arrest in response to DNA damage. It is also involved in the development of human carcinoma. CCNG1 contains one cyclin box. The cyclin box is a protein binding domain.


Pssm-ID: 410286  Cd Length: 98  Bit Score: 35.95  E-value: 6.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2413409771 149 LMEVCEVYKLHRETFYLAQDFFDRFMATQQnVVKTLLQLIGISSLFIAAKL--EEIYPPKLHQFAYVTDGACTEDEILSM 226
Cdd:cd20583     9 LLSLTQFFGFSTETFSLAVNLLDRFLAKMK-VQPKHLGCVGLSCFYLAVKAieEERNVPLATDLIRISQYRFTVSDMMRM 87

                          90
                  ....*....|
gi 2413409771 227 ELIIMKALNW 236
Cdd:cd20583    88 EKIILEKLCW 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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