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centrosome-associated protein 350 isoform X17 [Homo sapiens]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
CAP_GLY
pfam01302 CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
2498-2562
3.02e-29
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain]
Cd Length: 65
Bit Score: 112.11
E-value: 3.02e-29
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462515874 2498 I GDRV LIGNVQP G IL R FK G ETS FA K G F W A GVELD K P E G N N N G TYD G IA YFEC KE KHG I F AP P Q K I 2562
Cdd:pfam01302 1 V GDRV EVPGGRR G TV R YV G PVP FA P G V W V GVELD E P V G K N D G SVK G VR YFEC PP KHG V F VR P S K V 65
NIP100 super family
cl34954 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
2498-2781
1.66e-15
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
COG5244 :Pssm-ID: 227569 [Multi-domain]
Cd Length: 669
Bit Score: 83.20
E-value: 1.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2498 IG DRVL I G N v QP G IL RF K G E T S F AK G F W A G V ELD K P E G N N N G TYD G IA YF E CK EK HGIF AP P QKI S HIPE N f DD Y VD I NE 2577
Cdd:COG5244 6 VN DRVL L G D - KF G TV RF I G K T K F KD G I W I G L ELD D P V G K N D G SVN G VR YF H CK KR HGIF IR P DDD S LLNG N - AA Y EK I KG 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2578 DED C ysderyq CYNQEQN D T E GPKDREK D VSEYFYE K SLPSVND IEA SVNRSRSLKI E TDNVQD isgvlea HVHQQSSVD 2657
Cdd:COG5244 84 GLV C ------- ESKGMDK D G E IKQENHE D RIHFEES K IRRLEET IEA LKSTEKEEIV E LRRENE ------- ELDKINLSL 149
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2658 SQIS S K E NKD L IS D AT e K V S IAAEDDTLDNTFSE ----- EL EKQQQF T EEEDNLYAEA S EKL C -- TPLL D L L TREKNQ L E 2730
Cdd:COG5244 150 RERI S S E EPE L NK D GS - K L S YDELKEFVEESRVQ vydmv EL VSDISE T LNRNGSIQRS S VRE C er SNIH D V L FLVNGI L D 228
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462515874 2731 AQLKSSLN E EKKSKQ QL ------ EK I SLLTD S L LK VFVKDTVNQLQQIKKTRD E KI Q 2781
Cdd:COG5244 229 GVIDELNG E LERLRR QL vslmss HG I EVEEN S R LK ATLEKFQSLELKVNTLQE E LY Q 285
PTZ00121 super family
cl31754 MAEBL; Provisional
1340-1963
3.36e-07
MAEBL; Provisional
PTZ00121 :Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 56.69
E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1340 E SV R QLSD V ERVRGISL A QQ esvs LAQIIK A QQQRH ER DLALLKLKAEQEAL E SQRQL EE TRNK A AQVH - AE SLQQVVQS 1418
Cdd:PTZ00121 1179 E AA R KAEE V RKAEELRK A ED ---- ARKAEA A RKAEE ER KAEEARKAEDAKKA E AVKKA EE AKKD A EEAK k AE EERNNEEI 1254
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1419 QREVTEVLQEATCKI AA QQS E T AR l TT D AARQIC E MAELTRTHISDAV -------- V A SG A PL A ILYDHQRQHLPDFVKQ 1490
Cdd:PTZ00121 1255 RKFEEARMAHFARRQ AA IKA E E AR - KA D ELKKAE E KKKADEAKKAEEK kkadeakk K A EE A KK A DEAKKKAEEAKKKADA 1333
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1491 LRTRT E TDR K SPSVSLSQSKEGTLDSKHQKYS A SYDSYSESSGY K NH D RRSSSGSSRQESPSVPSCK E NE KK ---- L NGE 1566
Cdd:PTZ00121 1334 AKKKA E EAK K AAEAAKAEAEAAADEAEAAEEK A EAAEKKKEEAK K KA D AAKKKAEEKKKADEAKKKA E ED KK kade L KKA 1413
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1567 KIESSIDEQVQTA A DDSLRS D SVPSLPD E KDS tsi A T E YSL K FD E SMTED E IEEQSFRSLLPS E SHRRFNME K RRGHHDD 1646
Cdd:PTZ00121 1414 AAAKKKADEAKKK A EEKKKA D EAKKKAE E AKK --- A D E AKK K AE E AKKAE E AKKKAEEAKKAD E AKKKAEEA K KADEAKK 1490
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1647 SD EEA SPEKTTLST A K E LNMPFSGGQDSFSKFTMEMVR qym K E EE MRA A HQSSLLRLRE KA LKE K TKA EL AWL E HQ KK - H 1725
Cdd:PTZ00121 1491 KA EEA KKKADEAKK A A E AKKKADEAKKAEEAKKADEAK --- K A EE AKK A DEAKKAEEKK KA DEL K KAE EL KKA E EK KK a E 1567
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1726 LRD K G E D DK MPP LRK KQ rglllrl QQE KAE IK R LQ E AN K AARK E RQL ilk QQ EE IE K IRQTT IK LQ E KL K SAG E S K LDSH 1805
Cdd:PTZ00121 1568 EAK K A E E DK NMA LRK AE ------- EAK KAE EA R IE E VM K LYEE E KKM --- KA EE AK K AEEAK IK AE E LK K AEE E K K KVEQ 1637
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1806 SDDDTKDN K ATSPGPTDL E TRSPSPISISSSETSSIMQ K LKKMRSRMDEK fl T K REQK L MQRRQH A EELL E W K RR lda E E 1885
Cdd:PTZ00121 1638 LKKKEAEE K KKAEELKKA E EENKIKAAEEAKKAEEDKK K AEEAKKAEEDE -- K K AAEA L KKEAEE A KKAE E L K KK --- E A 1712
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462515874 1886 A E IRQM E k QALA A WDKEL IK PKTP KKE L E DQRTEQK E IASE EE SPVPL y S HL NS E SSIPE E LGSPAV E Y V PS E SIGQ E 1963
Cdd:PTZ00121 1713 E E KKKA E - ELKK A EEENK IK AEEA KKE A E EDKKKAE E AKKD EE EKKKI - A HL KK E EEKKA E EIRKEK E A V IE E ELDE E 1788
SMC_N super family
cl47134 RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
1687-2477
5.56e-04
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
pfam02463 :Pssm-ID: 481474 [Multi-domain]
Cd Length: 1161
Bit Score: 45.73
E-value: 5.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1687 M KEE E M R AAHQSSLLRL R E K AL K EKTKAE L AWLEHQKKH L RDKG E DD K MPP L R - K K Q RGLL L RLQ Q E K AEIKRLQ E ANKA 1765
Cdd:pfam02463 149 M MKP E R R LEIEEEAAGS R L K RK K KEALKK L IEETENLAE L IIDL E EL K LQE L K l K E Q AKKA L EYY Q L K EKLELEE E YLLY 228
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1766 ARKE ---------- RQ L ILKQ QEEIE KIR Q TTI K LQ EKL K --------- SAGESKLDSHSDDDT K DNKATSPGPTD LE T R 1826
Cdd:pfam02463 229 LDYL klneeridll QE L LRDE QEEIE SSK Q EIE K EE EKL A qvlkenkee EKEKKLQEEELKLLA K EEEELKSELLK LE R R 308
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1827 SPSPI -------- SISSS E TSSIMQ K LKKMRSRMDE K F L TKREQKLMQRRQHA E E L L E WKRR L DA E EAEIRQM E KQA L AA 1898
Cdd:pfam02463 309 KVDDE eklkesek EKKKA E KELKKE K EEIEELEKEL K E L EIKREAEEEEEEEL E K L Q E KLEQ L EE E LLAKKKL E SER L SS 388
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1899 WD K ELIKPKTP K K E L E DQRTEQK E I A SEE E S pv P L YSHLNS E SS I P EE LGSPAVEYVPSESIGQ E qpgspdhs I L TEEMI 1978
Cdd:pfam02463 389 AA K LKEEELEL K S E E E KEAQLLL E L A RQL E D -- L L KEEKKE E LE I L EE EEESIELKQGKLTEEK E -------- E L EKQEL 458
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1979 CSQEL E SSTSP S KHS L PKSCTSVSKQESSKGSH R TGGQCHLPIK S HQHCYSWSDES L SMTQSETTSDQSDIEGRIRALKD 2058
Cdd:pfam02463 459 KLLKD E LELKK S EDL L KETQLVKLQEQLELLLS R QKLEERSQKE S KARSGLKVLLA L IKDGVGGRIISAHGRLGDLGVAV 538
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2059 E LR K RKSVVNQLKKEQK krqkerl K A Q E ASLIKQ L ESYDEFIKKTEAE L SQDLETSPTAKPQ I KT L SSASEKPKIKPL -- 2136
Cdd:pfam02463 539 E NY K VAISTAVIVEVSA ------- T A D E VEERQK L VRALTELPLGARK L RLLIPKLKLPLKS I AV L EIDPILNLAQLD ka 611
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2137 --------- TPLHRSETA K NWKSLTES E RSRGSLESIAEH V DASLSGS E R S VSER SLS AYA K RVN E WDSRT E DFQ --- TP 2204
Cdd:pfam02463 612 tleadeddk RAKVVEGIL K DTELTKLK E SAKAKESGLRKG V SLEEGLA E K S EVKA SLS ELT K ELL E IQELQ E KAE sel AK 691
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2205 SPV LR SSRK I REESGDSL E NVPA L H L LK E LNATS R I - LDMSDGKVGESSK K SE I K E I E y TKLK KS KIEDAFSK E G KS DVL 2283
Cdd:pfam02463 692 EEI LR RQLE I KKKEQREK E ELKK L K L EA E ELLAD R V q EAQDKINEELKLL K QK I D E E E - EEEE KS RLKKEEKE E E KS ELS 770
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2284 LK LVLEQGDSSEILSK K DLPLDS E NVQKDLVG L AIENLHKS EE MLKERQSDQDMNHSPN I QS g KDIH E QKNTKEKDLSWS 2363
Cdd:pfam02463 771 LK EKELAEEREKTEKL K VEEEKE E KLKAQEEE L RALEEELK EE AELLEEEQLLIEQEEK I KE - EELE E LALELKEEQKLE 849
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2364 EHLFAPK E IPYS E DFEVSSFKKEISA E LYKDDFEVSSL L SLRKDSQSCRD K PQPMR S STSGA tsfg SN E EIS E CLSEKSL 2443
Cdd:pfam02463 850 KLAEEEL E RLEE E ITKEELLQELLLK E EELEEQKLKDE L ESKEEKEKEEK K ELEEE S QKLNL ---- LE E KEN E IEERIKE 925
810 820 830
....*....|....*....|....*....|....*
gi 2462515874 2444 SIHSNVHSDRLL - EL KSPTELM K S KE RSDV E H E QQ 2477
Cdd:pfam02463 926 EAEILLKYEEEP e EL LLEEADE K E KE ENNK E E E EE 960
Name
Accession
Description
Interval
E-value
CAP_GLY
pfam01302 CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
2498-2562
3.02e-29
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain]
Cd Length: 65
Bit Score: 112.11
E-value: 3.02e-29
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462515874 2498 I GDRV LIGNVQP G IL R FK G ETS FA K G F W A GVELD K P E G N N N G TYD G IA YFEC KE KHG I F AP P Q K I 2562
Cdd:pfam01302 1 V GDRV EVPGGRR G TV R YV G PVP FA P G V W V GVELD E P V G K N D G SVK G VR YFEC PP KHG V F VR P S K V 65
CAP_GLY
smart01052 Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
2498-2563
3.25e-26
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain]
Cd Length: 68
Bit Score: 103.82
E-value: 3.25e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462515874 2498 I GDRV LI - G NVQP G IL R FK G E T S FA K G F W A GVELD K P E - G N N N G TYD G IA YFEC KE KHGIF AP P Q K IS 2563
Cdd:smart01052 1 V GDRV EV g G GGRR G TV R YV G P T P FA P G V W V GVELD E P L r G K N D G SVK G VR YFEC PP KHGIF VR P S K VE 68
NIP100
COG5244 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
2498-2781
1.66e-15
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain]
Cd Length: 669
Bit Score: 83.20
E-value: 1.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2498 IG DRVL I G N v QP G IL RF K G E T S F AK G F W A G V ELD K P E G N N N G TYD G IA YF E CK EK HGIF AP P QKI S HIPE N f DD Y VD I NE 2577
Cdd:COG5244 6 VN DRVL L G D - KF G TV RF I G K T K F KD G I W I G L ELD D P V G K N D G SVN G VR YF H CK KR HGIF IR P DDD S LLNG N - AA Y EK I KG 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2578 DED C ysderyq CYNQEQN D T E GPKDREK D VSEYFYE K SLPSVND IEA SVNRSRSLKI E TDNVQD isgvlea HVHQQSSVD 2657
Cdd:COG5244 84 GLV C ------- ESKGMDK D G E IKQENHE D RIHFEES K IRRLEET IEA LKSTEKEEIV E LRRENE ------- ELDKINLSL 149
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2658 SQIS S K E NKD L IS D AT e K V S IAAEDDTLDNTFSE ----- EL EKQQQF T EEEDNLYAEA S EKL C -- TPLL D L L TREKNQ L E 2730
Cdd:COG5244 150 RERI S S E EPE L NK D GS - K L S YDELKEFVEESRVQ vydmv EL VSDISE T LNRNGSIQRS S VRE C er SNIH D V L FLVNGI L D 228
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462515874 2731 AQLKSSLN E EKKSKQ QL ------ EK I SLLTD S L LK VFVKDTVNQLQQIKKTRD E KI Q 2781
Cdd:COG5244 229 GVIDELNG E LERLRR QL vslmss HG I EVEEN S R LK ATLEKFQSLELKVNTLQE E LY Q 285
PTZ00121
PTZ00121 MAEBL; Provisional
1340-1963
3.36e-07
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 56.69
E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1340 E SV R QLSD V ERVRGISL A QQ esvs LAQIIK A QQQRH ER DLALLKLKAEQEAL E SQRQL EE TRNK A AQVH - AE SLQQVVQS 1418
Cdd:PTZ00121 1179 E AA R KAEE V RKAEELRK A ED ---- ARKAEA A RKAEE ER KAEEARKAEDAKKA E AVKKA EE AKKD A EEAK k AE EERNNEEI 1254
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1419 QREVTEVLQEATCKI AA QQS E T AR l TT D AARQIC E MAELTRTHISDAV -------- V A SG A PL A ILYDHQRQHLPDFVKQ 1490
Cdd:PTZ00121 1255 RKFEEARMAHFARRQ AA IKA E E AR - KA D ELKKAE E KKKADEAKKAEEK kkadeakk K A EE A KK A DEAKKKAEEAKKKADA 1333
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1491 LRTRT E TDR K SPSVSLSQSKEGTLDSKHQKYS A SYDSYSESSGY K NH D RRSSSGSSRQESPSVPSCK E NE KK ---- L NGE 1566
Cdd:PTZ00121 1334 AKKKA E EAK K AAEAAKAEAEAAADEAEAAEEK A EAAEKKKEEAK K KA D AAKKKAEEKKKADEAKKKA E ED KK kade L KKA 1413
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1567 KIESSIDEQVQTA A DDSLRS D SVPSLPD E KDS tsi A T E YSL K FD E SMTED E IEEQSFRSLLPS E SHRRFNME K RRGHHDD 1646
Cdd:PTZ00121 1414 AAAKKKADEAKKK A EEKKKA D EAKKKAE E AKK --- A D E AKK K AE E AKKAE E AKKKAEEAKKAD E AKKKAEEA K KADEAKK 1490
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1647 SD EEA SPEKTTLST A K E LNMPFSGGQDSFSKFTMEMVR qym K E EE MRA A HQSSLLRLRE KA LKE K TKA EL AWL E HQ KK - H 1725
Cdd:PTZ00121 1491 KA EEA KKKADEAKK A A E AKKKADEAKKAEEAKKADEAK --- K A EE AKK A DEAKKAEEKK KA DEL K KAE EL KKA E EK KK a E 1567
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1726 LRD K G E D DK MPP LRK KQ rglllrl QQE KAE IK R LQ E AN K AARK E RQL ilk QQ EE IE K IRQTT IK LQ E KL K SAG E S K LDSH 1805
Cdd:PTZ00121 1568 EAK K A E E DK NMA LRK AE ------- EAK KAE EA R IE E VM K LYEE E KKM --- KA EE AK K AEEAK IK AE E LK K AEE E K K KVEQ 1637
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1806 SDDDTKDN K ATSPGPTDL E TRSPSPISISSSETSSIMQ K LKKMRSRMDEK fl T K REQK L MQRRQH A EELL E W K RR lda E E 1885
Cdd:PTZ00121 1638 LKKKEAEE K KKAEELKKA E EENKIKAAEEAKKAEEDKK K AEEAKKAEEDE -- K K AAEA L KKEAEE A KKAE E L K KK --- E A 1712
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462515874 1886 A E IRQM E k QALA A WDKEL IK PKTP KKE L E DQRTEQK E IASE EE SPVPL y S HL NS E SSIPE E LGSPAV E Y V PS E SIGQ E 1963
Cdd:PTZ00121 1713 E E KKKA E - ELKK A EEENK IK AEEA KKE A E EDKKKAE E AKKD EE EKKKI - A HL KK E EEKKA E EIRKEK E A V IE E ELDE E 1788
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
1684-1928
4.20e-04
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 46.08
E-value: 4.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1684 R QYMK E E E MRA A HQSS L LRLR E KALK E KTKA E LAWL E HQKKHLRDKG E DDK mpp LRKKQRG LL LR L QQEKAE I K RL Q E AN 1763
Cdd:COG1196 235 R ELEA E L E ELE A ELEE L EAEL E ELEA E LAEL E AELE E LRLELEELEL E LEE --- AQAEEYE LL AE L ARLEQD I A RL E E RR 311
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1764 KAARKERQ lil KQQ EE IEKIRQTTIK L Q E K L KSAG E SKLDSHSDDDTKDNKAT spgpt DL E TRSPSPISISSSETSSIMQ 1843
Cdd:COG1196 312 RELEERLE --- ELE EE LAELEEELEE L E E E L EELE E ELEEAEEELEEAEAELA ----- EA E EALLEAEAELAEAEEELEE 383
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1844 KLKKMRSRMDEKF -------- L TKR E QK L MQ R RQHA EE L LE WKRRLD AE EA E IRQM E KQ AL AAWDK E LIKPKTPKKE L ED 1915
Cdd:COG1196 384 LAEELLEALRAAA elaaqlee L EEA E EA L LE R LERL EE E LE ELEEAL AE LE E EEEE E EE AL EEAAE E EAELEEEEEA L LE 463
250
....*....|...
gi 2462515874 1916 QRT E QK E I A SEE E 1928
Cdd:COG1196 464 LLA E LL E E A ALL E 476
SMC_N
pfam02463 RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
1687-2477
5.56e-04
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain]
Cd Length: 1161
Bit Score: 45.73
E-value: 5.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1687 M KEE E M R AAHQSSLLRL R E K AL K EKTKAE L AWLEHQKKH L RDKG E DD K MPP L R - K K Q RGLL L RLQ Q E K AEIKRLQ E ANKA 1765
Cdd:pfam02463 149 M MKP E R R LEIEEEAAGS R L K RK K KEALKK L IEETENLAE L IIDL E EL K LQE L K l K E Q AKKA L EYY Q L K EKLELEE E YLLY 228
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1766 ARKE ---------- RQ L ILKQ QEEIE KIR Q TTI K LQ EKL K --------- SAGESKLDSHSDDDT K DNKATSPGPTD LE T R 1826
Cdd:pfam02463 229 LDYL klneeridll QE L LRDE QEEIE SSK Q EIE K EE EKL A qvlkenkee EKEKKLQEEELKLLA K EEEELKSELLK LE R R 308
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1827 SPSPI -------- SISSS E TSSIMQ K LKKMRSRMDE K F L TKREQKLMQRRQHA E E L L E WKRR L DA E EAEIRQM E KQA L AA 1898
Cdd:pfam02463 309 KVDDE eklkesek EKKKA E KELKKE K EEIEELEKEL K E L EIKREAEEEEEEEL E K L Q E KLEQ L EE E LLAKKKL E SER L SS 388
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1899 WD K ELIKPKTP K K E L E DQRTEQK E I A SEE E S pv P L YSHLNS E SS I P EE LGSPAVEYVPSESIGQ E qpgspdhs I L TEEMI 1978
Cdd:pfam02463 389 AA K LKEEELEL K S E E E KEAQLLL E L A RQL E D -- L L KEEKKE E LE I L EE EEESIELKQGKLTEEK E -------- E L EKQEL 458
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1979 CSQEL E SSTSP S KHS L PKSCTSVSKQESSKGSH R TGGQCHLPIK S HQHCYSWSDES L SMTQSETTSDQSDIEGRIRALKD 2058
Cdd:pfam02463 459 KLLKD E LELKK S EDL L KETQLVKLQEQLELLLS R QKLEERSQKE S KARSGLKVLLA L IKDGVGGRIISAHGRLGDLGVAV 538
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2059 E LR K RKSVVNQLKKEQK krqkerl K A Q E ASLIKQ L ESYDEFIKKTEAE L SQDLETSPTAKPQ I KT L SSASEKPKIKPL -- 2136
Cdd:pfam02463 539 E NY K VAISTAVIVEVSA ------- T A D E VEERQK L VRALTELPLGARK L RLLIPKLKLPLKS I AV L EIDPILNLAQLD ka 611
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2137 --------- TPLHRSETA K NWKSLTES E RSRGSLESIAEH V DASLSGS E R S VSER SLS AYA K RVN E WDSRT E DFQ --- TP 2204
Cdd:pfam02463 612 tleadeddk RAKVVEGIL K DTELTKLK E SAKAKESGLRKG V SLEEGLA E K S EVKA SLS ELT K ELL E IQELQ E KAE sel AK 691
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2205 SPV LR SSRK I REESGDSL E NVPA L H L LK E LNATS R I - LDMSDGKVGESSK K SE I K E I E y TKLK KS KIEDAFSK E G KS DVL 2283
Cdd:pfam02463 692 EEI LR RQLE I KKKEQREK E ELKK L K L EA E ELLAD R V q EAQDKINEELKLL K QK I D E E E - EEEE KS RLKKEEKE E E KS ELS 770
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2284 LK LVLEQGDSSEILSK K DLPLDS E NVQKDLVG L AIENLHKS EE MLKERQSDQDMNHSPN I QS g KDIH E QKNTKEKDLSWS 2363
Cdd:pfam02463 771 LK EKELAEEREKTEKL K VEEEKE E KLKAQEEE L RALEEELK EE AELLEEEQLLIEQEEK I KE - EELE E LALELKEEQKLE 849
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2364 EHLFAPK E IPYS E DFEVSSFKKEISA E LYKDDFEVSSL L SLRKDSQSCRD K PQPMR S STSGA tsfg SN E EIS E CLSEKSL 2443
Cdd:pfam02463 850 KLAEEEL E RLEE E ITKEELLQELLLK E EELEEQKLKDE L ESKEEKEKEEK K ELEEE S QKLNL ---- LE E KEN E IEERIKE 925
810 820 830
....*....|....*....|....*....|....*
gi 2462515874 2444 SIHSNVHSDRLL - EL KSPTELM K S KE RSDV E H E QQ 2477
Cdd:pfam02463 926 EAEILLKYEEEP e EL LLEEADE K E KE ENNK E E E EE 960
PTZ00121
PTZ00121 MAEBL; Provisional
1681-2346
2.25e-03
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 43.98
E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1681 E MV R QY mk E EEMR A AH qssl LRLR E K A L K EKTK A EL A WL E HQKKHL R d K G E DDK M PPLRKK Q RGLLLRLQQEKA E I K RLQ 1760
Cdd:PTZ00121 1215 E EA R KA -- E DAKK A EA ---- VKKA E E A K K DAEE A KK A EE E RNNEEI R - K F E EAR M AHFARR Q AAIKAEEARKAD E L K KAE 1287
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1761 E AN KA ARKERQLIL K QQE E IE K IRQTTI K LQ E KL K S A G E S K ldshsdddtkd N KA TSPGPTDL E TRSPSPISISSS E TSS 1840
Cdd:PTZ00121 1288 E KK KA DEAKKAEEK K KAD E AK K KAEEAK K AD E AK K K A E E A K ----------- K KA DAAKKKAE E AKKAAEAAKAEA E AAA 1356
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1841 IMQKLKKMRSRMD EK FLTKREQ K LMQRRQH AEE llew K RRL D AEEAEIRQME K Q A laawd K EL I K PKTP KK ELEDQRTEQ 1920
Cdd:PTZ00121 1357 DEAEAAEEKAEAA EK KKEEAKK K ADAAKKK AEE ---- K KKA D EAKKKAEEDK K K A ----- D EL K K AAAA KK KADEAKKKA 1427
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1921 K E IASEE E S pvply SHLNS E SSIPE E LGSP A V E YVPS E SI --- GQ E QPGSPDHSILT EE MICSQ E LESSTSPS K hslp K S 1997
Cdd:PTZ00121 1428 E E KKKAD E A ----- KKKAE E AKKAD E AKKK A E E AKKA E EA kkk AE E AKKADEAKKKA EE AKKAD E AKKKAEEA K ---- K K 1498
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1998 CTSVS K QESS K GS hrtggqchlpikshqhcysw S DE SLSMTQSETTSDQSDI E GRIR A lk DE LR K RKSV vnqlkkeqkkr 2077
Cdd:PTZ00121 1499 ADEAK K AAEA K KK -------------------- A DE AKKAEEAKKADEAKKA E EAKK A -- DE AK K AEEK ----------- 1545
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2078 qker L KA Q E ASLIKQ L ESYD E FI K KT EA ELSQDLETSPTA K PQI ktl SSAS E KPK I KPLTP L HRS E TAKNWKSLTES E RS 2157
Cdd:PTZ00121 1546 ---- K KA D E LKKAEE L KKAE E KK K AE EA KKAEEDKNMALR K AEE --- AKKA E EAR I EEVMK L YEE E KKMKAEEAKKA E EA 1618
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2158 RGSL E SI -- AE HVDASLSGSERSVS E RSLS A YAKRVN E WDSRTEDFQTPSPVLRSSR K IR E ESGDSLENVP A LHL LK ELN 2235
Cdd:PTZ00121 1619 KIKA E EL kk AE EEKKKVEQLKKKEA E EKKK A EELKKA E EENKIKAAEEAKKAEEDKK K AE E AKKAEEDEKK A AEA LK KEA 1698
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2236 ATSRILDMSDG K VG E SS KK S E -- I K EI E YT K L K KSKIEDAFSKEG K SDVLL K lv LEQGDSSE I LS - KK DLPLDS E NVQ K D 2312
Cdd:PTZ00121 1699 EEAKKAEELKK K EA E EK KK A E el K K AE E EN K I K AEEAKKEAEEDK K KAEEA K -- KDEEEKKK I AH l KK EEEKKA E EIR K E 1776
650 660 670
....*....|....*....|....*....|....*..
gi 2462515874 2313 LVGLAI E N L HKSE E --- M LKERQSDQDMNHSP NI QS G 2346
Cdd:PTZ00121 1777 KEAVIE E E L DEED E krr M EVDKKIKDIFDNFA NI IE G 1813
Name
Accession
Description
Interval
E-value
CAP_GLY
pfam01302 CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
2498-2562
3.02e-29
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain]
Cd Length: 65
Bit Score: 112.11
E-value: 3.02e-29
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462515874 2498 I GDRV LIGNVQP G IL R FK G ETS FA K G F W A GVELD K P E G N N N G TYD G IA YFEC KE KHG I F AP P Q K I 2562
Cdd:pfam01302 1 V GDRV EVPGGRR G TV R YV G PVP FA P G V W V GVELD E P V G K N D G SVK G VR YFEC PP KHG V F VR P S K V 65
CAP_GLY
smart01052 Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
2498-2563
3.25e-26
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain]
Cd Length: 68
Bit Score: 103.82
E-value: 3.25e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462515874 2498 I GDRV LI - G NVQP G IL R FK G E T S FA K G F W A GVELD K P E - G N N N G TYD G IA YFEC KE KHGIF AP P Q K IS 2563
Cdd:smart01052 1 V GDRV EV g G GGRR G TV R YV G P T P FA P G V W V GVELD E P L r G K N D G SVK G VR YFEC PP KHGIF VR P S K VE 68
NIP100
COG5244 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
2498-2781
1.66e-15
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain]
Cd Length: 669
Bit Score: 83.20
E-value: 1.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2498 IG DRVL I G N v QP G IL RF K G E T S F AK G F W A G V ELD K P E G N N N G TYD G IA YF E CK EK HGIF AP P QKI S HIPE N f DD Y VD I NE 2577
Cdd:COG5244 6 VN DRVL L G D - KF G TV RF I G K T K F KD G I W I G L ELD D P V G K N D G SVN G VR YF H CK KR HGIF IR P DDD S LLNG N - AA Y EK I KG 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2578 DED C ysderyq CYNQEQN D T E GPKDREK D VSEYFYE K SLPSVND IEA SVNRSRSLKI E TDNVQD isgvlea HVHQQSSVD 2657
Cdd:COG5244 84 GLV C ------- ESKGMDK D G E IKQENHE D RIHFEES K IRRLEET IEA LKSTEKEEIV E LRRENE ------- ELDKINLSL 149
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2658 SQIS S K E NKD L IS D AT e K V S IAAEDDTLDNTFSE ----- EL EKQQQF T EEEDNLYAEA S EKL C -- TPLL D L L TREKNQ L E 2730
Cdd:COG5244 150 RERI S S E EPE L NK D GS - K L S YDELKEFVEESRVQ vydmv EL VSDISE T LNRNGSIQRS S VRE C er SNIH D V L FLVNGI L D 228
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462515874 2731 AQLKSSLN E EKKSKQ QL ------ EK I SLLTD S L LK VFVKDTVNQLQQIKKTRD E KI Q 2781
Cdd:COG5244 229 GVIDELNG E LERLRR QL vslmss HG I EVEEN S R LK ATLEKFQSLELKVNTLQE E LY Q 285
PTZ00121
PTZ00121 MAEBL; Provisional
1340-1963
3.36e-07
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 56.69
E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1340 E SV R QLSD V ERVRGISL A QQ esvs LAQIIK A QQQRH ER DLALLKLKAEQEAL E SQRQL EE TRNK A AQVH - AE SLQQVVQS 1418
Cdd:PTZ00121 1179 E AA R KAEE V RKAEELRK A ED ---- ARKAEA A RKAEE ER KAEEARKAEDAKKA E AVKKA EE AKKD A EEAK k AE EERNNEEI 1254
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1419 QREVTEVLQEATCKI AA QQS E T AR l TT D AARQIC E MAELTRTHISDAV -------- V A SG A PL A ILYDHQRQHLPDFVKQ 1490
Cdd:PTZ00121 1255 RKFEEARMAHFARRQ AA IKA E E AR - KA D ELKKAE E KKKADEAKKAEEK kkadeakk K A EE A KK A DEAKKKAEEAKKKADA 1333
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1491 LRTRT E TDR K SPSVSLSQSKEGTLDSKHQKYS A SYDSYSESSGY K NH D RRSSSGSSRQESPSVPSCK E NE KK ---- L NGE 1566
Cdd:PTZ00121 1334 AKKKA E EAK K AAEAAKAEAEAAADEAEAAEEK A EAAEKKKEEAK K KA D AAKKKAEEKKKADEAKKKA E ED KK kade L KKA 1413
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1567 KIESSIDEQVQTA A DDSLRS D SVPSLPD E KDS tsi A T E YSL K FD E SMTED E IEEQSFRSLLPS E SHRRFNME K RRGHHDD 1646
Cdd:PTZ00121 1414 AAAKKKADEAKKK A EEKKKA D EAKKKAE E AKK --- A D E AKK K AE E AKKAE E AKKKAEEAKKAD E AKKKAEEA K KADEAKK 1490
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1647 SD EEA SPEKTTLST A K E LNMPFSGGQDSFSKFTMEMVR qym K E EE MRA A HQSSLLRLRE KA LKE K TKA EL AWL E HQ KK - H 1725
Cdd:PTZ00121 1491 KA EEA KKKADEAKK A A E AKKKADEAKKAEEAKKADEAK --- K A EE AKK A DEAKKAEEKK KA DEL K KAE EL KKA E EK KK a E 1567
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1726 LRD K G E D DK MPP LRK KQ rglllrl QQE KAE IK R LQ E AN K AARK E RQL ilk QQ EE IE K IRQTT IK LQ E KL K SAG E S K LDSH 1805
Cdd:PTZ00121 1568 EAK K A E E DK NMA LRK AE ------- EAK KAE EA R IE E VM K LYEE E KKM --- KA EE AK K AEEAK IK AE E LK K AEE E K K KVEQ 1637
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1806 SDDDTKDN K ATSPGPTDL E TRSPSPISISSSETSSIMQ K LKKMRSRMDEK fl T K REQK L MQRRQH A EELL E W K RR lda E E 1885
Cdd:PTZ00121 1638 LKKKEAEE K KKAEELKKA E EENKIKAAEEAKKAEEDKK K AEEAKKAEEDE -- K K AAEA L KKEAEE A KKAE E L K KK --- E A 1712
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462515874 1886 A E IRQM E k QALA A WDKEL IK PKTP KKE L E DQRTEQK E IASE EE SPVPL y S HL NS E SSIPE E LGSPAV E Y V PS E SIGQ E 1963
Cdd:PTZ00121 1713 E E KKKA E - ELKK A EEENK IK AEEA KKE A E EDKKKAE E AKKD EE EKKKI - A HL KK E EEKKA E EIRKEK E A V IE E ELDE E 1788
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
1684-1928
4.20e-04
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 46.08
E-value: 4.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1684 R QYMK E E E MRA A HQSS L LRLR E KALK E KTKA E LAWL E HQKKHLRDKG E DDK mpp LRKKQRG LL LR L QQEKAE I K RL Q E AN 1763
Cdd:COG1196 235 R ELEA E L E ELE A ELEE L EAEL E ELEA E LAEL E AELE E LRLELEELEL E LEE --- AQAEEYE LL AE L ARLEQD I A RL E E RR 311
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1764 KAARKERQ lil KQQ EE IEKIRQTTIK L Q E K L KSAG E SKLDSHSDDDTKDNKAT spgpt DL E TRSPSPISISSSETSSIMQ 1843
Cdd:COG1196 312 RELEERLE --- ELE EE LAELEEELEE L E E E L EELE E ELEEAEEELEEAEAELA ----- EA E EALLEAEAELAEAEEELEE 383
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1844 KLKKMRSRMDEKF -------- L TKR E QK L MQ R RQHA EE L LE WKRRLD AE EA E IRQM E KQ AL AAWDK E LIKPKTPKKE L ED 1915
Cdd:COG1196 384 LAEELLEALRAAA elaaqlee L EEA E EA L LE R LERL EE E LE ELEEAL AE LE E EEEE E EE AL EEAAE E EAELEEEEEA L LE 463
250
....*....|...
gi 2462515874 1916 QRT E QK E I A SEE E 1928
Cdd:COG1196 464 LLA E LL E E A ALL E 476
SMC_N
pfam02463 RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
1687-2477
5.56e-04
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain]
Cd Length: 1161
Bit Score: 45.73
E-value: 5.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1687 M KEE E M R AAHQSSLLRL R E K AL K EKTKAE L AWLEHQKKH L RDKG E DD K MPP L R - K K Q RGLL L RLQ Q E K AEIKRLQ E ANKA 1765
Cdd:pfam02463 149 M MKP E R R LEIEEEAAGS R L K RK K KEALKK L IEETENLAE L IIDL E EL K LQE L K l K E Q AKKA L EYY Q L K EKLELEE E YLLY 228
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1766 ARKE ---------- RQ L ILKQ QEEIE KIR Q TTI K LQ EKL K --------- SAGESKLDSHSDDDT K DNKATSPGPTD LE T R 1826
Cdd:pfam02463 229 LDYL klneeridll QE L LRDE QEEIE SSK Q EIE K EE EKL A qvlkenkee EKEKKLQEEELKLLA K EEEELKSELLK LE R R 308
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1827 SPSPI -------- SISSS E TSSIMQ K LKKMRSRMDE K F L TKREQKLMQRRQHA E E L L E WKRR L DA E EAEIRQM E KQA L AA 1898
Cdd:pfam02463 309 KVDDE eklkesek EKKKA E KELKKE K EEIEELEKEL K E L EIKREAEEEEEEEL E K L Q E KLEQ L EE E LLAKKKL E SER L SS 388
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1899 WD K ELIKPKTP K K E L E DQRTEQK E I A SEE E S pv P L YSHLNS E SS I P EE LGSPAVEYVPSESIGQ E qpgspdhs I L TEEMI 1978
Cdd:pfam02463 389 AA K LKEEELEL K S E E E KEAQLLL E L A RQL E D -- L L KEEKKE E LE I L EE EEESIELKQGKLTEEK E -------- E L EKQEL 458
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1979 CSQEL E SSTSP S KHS L PKSCTSVSKQESSKGSH R TGGQCHLPIK S HQHCYSWSDES L SMTQSETTSDQSDIEGRIRALKD 2058
Cdd:pfam02463 459 KLLKD E LELKK S EDL L KETQLVKLQEQLELLLS R QKLEERSQKE S KARSGLKVLLA L IKDGVGGRIISAHGRLGDLGVAV 538
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2059 E LR K RKSVVNQLKKEQK krqkerl K A Q E ASLIKQ L ESYDEFIKKTEAE L SQDLETSPTAKPQ I KT L SSASEKPKIKPL -- 2136
Cdd:pfam02463 539 E NY K VAISTAVIVEVSA ------- T A D E VEERQK L VRALTELPLGARK L RLLIPKLKLPLKS I AV L EIDPILNLAQLD ka 611
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2137 --------- TPLHRSETA K NWKSLTES E RSRGSLESIAEH V DASLSGS E R S VSER SLS AYA K RVN E WDSRT E DFQ --- TP 2204
Cdd:pfam02463 612 tleadeddk RAKVVEGIL K DTELTKLK E SAKAKESGLRKG V SLEEGLA E K S EVKA SLS ELT K ELL E IQELQ E KAE sel AK 691
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2205 SPV LR SSRK I REESGDSL E NVPA L H L LK E LNATS R I - LDMSDGKVGESSK K SE I K E I E y TKLK KS KIEDAFSK E G KS DVL 2283
Cdd:pfam02463 692 EEI LR RQLE I KKKEQREK E ELKK L K L EA E ELLAD R V q EAQDKINEELKLL K QK I D E E E - EEEE KS RLKKEEKE E E KS ELS 770
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2284 LK LVLEQGDSSEILSK K DLPLDS E NVQKDLVG L AIENLHKS EE MLKERQSDQDMNHSPN I QS g KDIH E QKNTKEKDLSWS 2363
Cdd:pfam02463 771 LK EKELAEEREKTEKL K VEEEKE E KLKAQEEE L RALEEELK EE AELLEEEQLLIEQEEK I KE - EELE E LALELKEEQKLE 849
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2364 EHLFAPK E IPYS E DFEVSSFKKEISA E LYKDDFEVSSL L SLRKDSQSCRD K PQPMR S STSGA tsfg SN E EIS E CLSEKSL 2443
Cdd:pfam02463 850 KLAEEEL E RLEE E ITKEELLQELLLK E EELEEQKLKDE L ESKEEKEKEEK K ELEEE S QKLNL ---- LE E KEN E IEERIKE 925
810 820 830
....*....|....*....|....*....|....*
gi 2462515874 2444 SIHSNVHSDRLL - EL KSPTELM K S KE RSDV E H E QQ 2477
Cdd:pfam02463 926 EAEILLKYEEEP e EL LLEEADE K E KE ENNK E E E EE 960
PTZ00121
PTZ00121 MAEBL; Provisional
1681-2346
2.25e-03
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 43.98
E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1681 E MV R QY mk E EEMR A AH qssl LRLR E K A L K EKTK A EL A WL E HQKKHL R d K G E DDK M PPLRKK Q RGLLLRLQQEKA E I K RLQ 1760
Cdd:PTZ00121 1215 E EA R KA -- E DAKK A EA ---- VKKA E E A K K DAEE A KK A EE E RNNEEI R - K F E EAR M AHFARR Q AAIKAEEARKAD E L K KAE 1287
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1761 E AN KA ARKERQLIL K QQE E IE K IRQTTI K LQ E KL K S A G E S K ldshsdddtkd N KA TSPGPTDL E TRSPSPISISSS E TSS 1840
Cdd:PTZ00121 1288 E KK KA DEAKKAEEK K KAD E AK K KAEEAK K AD E AK K K A E E A K ----------- K KA DAAKKKAE E AKKAAEAAKAEA E AAA 1356
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1841 IMQKLKKMRSRMD EK FLTKREQ K LMQRRQH AEE llew K RRL D AEEAEIRQME K Q A laawd K EL I K PKTP KK ELEDQRTEQ 1920
Cdd:PTZ00121 1357 DEAEAAEEKAEAA EK KKEEAKK K ADAAKKK AEE ---- K KKA D EAKKKAEEDK K K A ----- D EL K K AAAA KK KADEAKKKA 1427
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1921 K E IASEE E S pvply SHLNS E SSIPE E LGSP A V E YVPS E SI --- GQ E QPGSPDHSILT EE MICSQ E LESSTSPS K hslp K S 1997
Cdd:PTZ00121 1428 E E KKKAD E A ----- KKKAE E AKKAD E AKKK A E E AKKA E EA kkk AE E AKKADEAKKKA EE AKKAD E AKKKAEEA K ---- K K 1498
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1998 CTSVS K QESS K GS hrtggqchlpikshqhcysw S DE SLSMTQSETTSDQSDI E GRIR A lk DE LR K RKSV vnqlkkeqkkr 2077
Cdd:PTZ00121 1499 ADEAK K AAEA K KK -------------------- A DE AKKAEEAKKADEAKKA E EAKK A -- DE AK K AEEK ----------- 1545
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2078 qker L KA Q E ASLIKQ L ESYD E FI K KT EA ELSQDLETSPTA K PQI ktl SSAS E KPK I KPLTP L HRS E TAKNWKSLTES E RS 2157
Cdd:PTZ00121 1546 ---- K KA D E LKKAEE L KKAE E KK K AE EA KKAEEDKNMALR K AEE --- AKKA E EAR I EEVMK L YEE E KKMKAEEAKKA E EA 1618
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2158 RGSL E SI -- AE HVDASLSGSERSVS E RSLS A YAKRVN E WDSRTEDFQTPSPVLRSSR K IR E ESGDSLENVP A LHL LK ELN 2235
Cdd:PTZ00121 1619 KIKA E EL kk AE EEKKKVEQLKKKEA E EKKK A EELKKA E EENKIKAAEEAKKAEEDKK K AE E AKKAEEDEKK A AEA LK KEA 1698
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 2236 ATSRILDMSDG K VG E SS KK S E -- I K EI E YT K L K KSKIEDAFSKEG K SDVLL K lv LEQGDSSE I LS - KK DLPLDS E NVQ K D 2312
Cdd:PTZ00121 1699 EEAKKAEELKK K EA E EK KK A E el K K AE E EN K I K AEEAKKEAEEDK K KAEEA K -- KDEEEKKK I AH l KK EEEKKA E EIR K E 1776
650 660 670
....*....|....*....|....*....|....*..
gi 2462515874 2313 LVGLAI E N L HKSE E --- M LKERQSDQDMNHSP NI QS G 2346
Cdd:PTZ00121 1777 KEAVIE E E L DEED E krr M EVDKKIKDIFDNFA NI IE G 1813
PRK12704
PRK12704 phosphodiesterase; Provisional
1681-1783
2.78e-03
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain]
Cd Length: 520
Bit Score: 43.23
E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1681 E MVRQYMK E EEMR A AH -- QSS LL RLR E KAL K EKTKA E ------ LAW L EHQK K H L RD K G E -- D D K MPP L R K KQR glll R L Q 1750
Cdd:PRK12704 38 E EAKRILE E AKKE A EA ik KEA LL EAK E EIH K LRNEF E kelrer RNE L QKLE K R L LQ K E E nl D R K LEL L E K REE ---- E L E 113
90 100 110
....*....|....*....|....*....|....
gi 2462515874 1751 QEKA E IKRL Q EANKAARK E - RQ LI LK Q QE E I E K I 1783
Cdd:PRK12704 114 KKEK E LEQK Q QELEKKEE E l EE LI EE Q LQ E L E R I 147
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
1330-1803
3.05e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 43.39
E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1330 AEL SY L NAIEESVRQLSDVERV R GIS L AQQESVSLAQIIKAQQQRH E RDLA L LKLKA E Q E AL E sq RQ L E E TRNKAAQVH A 1409
Cdd:COG1196 295 AEL AR L EQDIARLEERRRELEE R LEE L EEELAELEEELEELEEELE E LEEE L EEAEE E L E EA E -- AE L A E AEEALLEAE A 372
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1410 E SLQQVVQSQREVT E V L QEAT c KI A AQQSETAR L TTDAARQICEMAE L TRTHISDA vv ASG A P L AILYDHQRQH L pdf VK 1489
Cdd:COG1196 373 E LAEAEEELEELAE E L L EALR - AA A ELAAQLEE L EEAEEALLERLER L EEELEELE -- EAL A E L EEEEEEEEEA L --- EE 446
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1490 QLRTRT E TDRKSPSVSLSQSKEGTLDSKHQKYS A SYDSYSESSGYKNHDRRSSSGSSRQESPS V PSCKENEKKLNGEK -- 1567
Cdd:COG1196 447 AAEEEA E LEEEEEALLELLAELLEEAALLEAAL A ELLEELAEAAARLLLLLEAEADYEGFLEG V KAALLLAGLRGLAG av 526
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1568 - IESSIDEQVQT A ADDS L RSDSVPSLPDEKDSTSI A T EY SLKFDES - M T EDEIEEQSF R SL L PSESH R RFNMEKRRGHHD 1645
Cdd:COG1196 527 a VLIGVEAAYEA A LEAA L AAALQNIVVEDDEVAAA A I EY LKAAKAG r A T FLPLDKIRA R AA L AAALA R GAIGAAVDLVAS 606
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1646 D SD E EASPEKTTLS T AKELNMPFSGGQDSFSKFTMEMV R QYMKEE E MRAAHQS - SL LRLREKA L KEKTKAEL A W LE HQKK 1724
Cdd:COG1196 607 D LR E ADARYYVLGD T LLGRTLVAARLEAALRRAVTLAG R LREVTL E GEGGSAG g SL TGGSRRE L LAALLEAE A E LE ELAE 686
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462515874 1725 H L RDKGEDDK mppl RKKQRGLLLRLQQEK AE IK RL Q E ANKAARK E R QL ILKQQ E EI E KIRQTTIK L Q E KLKSAGESKL D 1803
Cdd:COG1196 687 R L AEEELELE ---- EALLAEEEEERELAE AE EE RL E E ELEEEAL E E QL EAERE E LL E ELLEEEEL L E E EALEELPEPP D 761
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
1684-1929
9.76e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 41.85
E-value: 9.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1684 RQ Y M -- KEE EMRAAHQSS LL R LRE K alkekt K AEL AW LE HQKKH L RDKG E D dkmpp L RKKQRG L LLR L QQEKA E IKR L QE 1761
Cdd:COG1196 213 ER Y R el KEE LKELEAELL LL K LRE L ------ E AEL EE LE AELEE L EAEL E E ----- L EAELAE L EAE L EELRL E LEE L EL 281
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1762 ANKA A RK E RQLI L KQQEEI E KIRQ tti K L Q E KLKSAG E SK ldshsdddtkdnkatspgptdletrspspisisssetssi 1841
Cdd:COG1196 282 ELEE A QA E EYEL L AELARL E QDIA --- R L E E RRRELE E RL ---------------------------------------- 318
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462515874 1842 mqklkkmrsrmd E KFLTKREQKLMQRRQHA EEL L E WKRR L DAE E A E IRQM E KQALA A wdkelikpktp KKE L EDQRT E QK 1921
Cdd:COG1196 319 ------------ E ELEEELAELEEELEELE EEL E E LEEE L EEA E E E LEEA E AELAE A ----------- EEA L LEAEA E LA 375
....*...
gi 2462515874 1922 E IAS E E E S 1929
Cdd:COG1196 376 E AEE E L E E 383
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
