|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3-774 |
1.97e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 1.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 3 RLESLMQSLKMNIFRLQTEKDLnPQKTAFLKDRLNAIQeehskdLKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATL 82
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQAEK-AERYKELKAELRELE------LALLVLRLEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 83 KIA-----------SQTKKNAAIIEEELKTTKRKMNLKIQEVHILQQNCIALRDSIQSAQELLAQEQKKKEELEIATSQL 151
Cdd:TIGR02168 263 QELeekleelrlevSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 152 KSDLTSrddliskLVEENKVLNDQLTKKCSELSCMLQTVTMEKARIIADHQAILQVEQKMmtqtfqeqnllldaahASIT 231
Cdd:TIGR02168 343 EEKLEE-------LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI----------------ASLN 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 232 NELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKrtavqkELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKT 311
Cdd:TIGR02168 400 NEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL------KELQAELEELEEELEELQEELERLEEALEELREELEEA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 312 EKEIVQercnLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASlelQQVTSDYHGLAQQKVEkiTESKNKLAYEN--- 388
Cdd:TIGR02168 474 EQALDA----AERELAQLQARLDSLERLQENLEGFSEGVKALLKN---QSGLSGILGVLSELIS--VDEGYEAAIEAalg 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 389 GKLQ-IKVKQLEEQVQSFtDTSLQNDHLRKM--------NKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKE 459
Cdd:TIGR02168 545 GRLQaVVVENLNAAKKAI-AFLKQNELGRVTflpldsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 460 DLEAVEDRENKkvgnfQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRdSEIAGLKKERDLNQQRVQKLE 539
Cdd:TIGR02168 624 GVLVVDDLDNA-----LELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 540 AEVD---QWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFK 616
Cdd:TIGR02168 698 KALAelrKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 617 DRMTEES----------KVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKDQYQKKNYEQSL--- 683
Cdd:TIGR02168 778 AEAEAEIeeleaqieqlKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIesl 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 684 --SIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVE 761
Cdd:TIGR02168 858 aaEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
|
810
....*....|...
gi 2462572048 762 SEQITANLEEAHR 774
Cdd:TIGR02168 938 IDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
235-774 |
4.41e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 4.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 235 QTVQNEKTQLQAHLdhLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRgELEASMQEKKSLLEEKERFQREVNKTEKE 314
Cdd:COG1196 216 RELKEELKELEAEL--LLLKLRELEAELEELEAELEELEAELEELEAELA-ELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 315 IVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMAslELQQVTSDYHGLAQQKVEKITESKNKLAYENGKLQIK 394
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE--ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 395 VKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRtvkcRNAALKESQKLKEDLEAVEDRENKKVGN 474
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER----LEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 475 FQRQLAEAKEDnckvtimLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVmeD 554
Cdd:COG1196 447 AAEEEAELEEE-------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL--A 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 555 QHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTK-LDHIQEQLESKELERQNLETfKDRMTEESKVEAELHAER 633
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvAAAAIEYLKAAKAGRATFLP-LDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 634 IEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRN 713
Cdd:COG1196 597 IGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462572048 714 KQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHR 774
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
42-637 |
8.64e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 8.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 42 EHSKDLKLLHLKVMNLRqqLRAVKEEEDKAQDEVQRLTATLKiasQTKKNAAIIEEELKTTKRKMNLKIQEVHILQQNCI 121
Cdd:COG1196 217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELE---ELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 122 ALRDSIQSAQELLAQEQKKKEELEIATSQLKSDLTSRDDLISKLVEENKVLNDQLTKkcselscmlqtvtmekariiadh 201
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE----------------------- 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 202 qaiLQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQcIQKAQDAEKRTAVQKELLESTIA 281
Cdd:COG1196 349 ---AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ-LEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 282 RLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKnkvdinTLTHNLQTLEEENKHLADQMASLELQQ 361
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE------AALLEAALAELLEELAEAAARLLLLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 362 VTSDYHGLAQQKVEKITESKNKLAYENGKLQIKV-KQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEEL 440
Cdd:COG1196 499 AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVeAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 441 SRTVKCRNAALKESQKLKEDLEAVE-DRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIE---LGR 516
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLvASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEgegGSA 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 517 RDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNnhLQTKLD 596
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL--EAEREE 736
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 2462572048 597 HIQEQLESKELERQNLETFKDRMTEESKVEAELHA--ERIEAL 637
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERleREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
425-746 |
9.63e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 9.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 425 KYAQVKSILERSKEELSRtvkcrnAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDnckvtimLENVLASHSKMQ 504
Cdd:COG1196 214 RYRELKEELKELEAELLL------LKLRELEAELEELEAELEELEAELEELEAELAELEAE-------LEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 505 GALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQA 584
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 585 LQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKEL 664
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 665 KQMELIKDQYQKKNYEQSLSIQRfvcEMTNLQKEMQMLAKSQYDAsvrnKQQELHLEAERKIRQELENRCQELEETVRHL 744
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLE---LLAELLEEAALLEAALAEL----LEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
..
gi 2462572048 745 KK 746
Cdd:COG1196 514 LL 515
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
317-667 |
4.51e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 4.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 317 QERCNLEKELAKNKVDINTLTHNLQTLEEEnkhladqmasleLQQVTSDYHGLAQQKVEKITESKNklayengkLQIKVK 396
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKE------------LEELEEELEQLRKELEELSRQISA--------LRKDLA 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 397 QLEEQVQSFTDTSLQNDHLRkmnkylqTKYAQVKSILERSKEELSRTVKcrnAALKESQKLKEDLEAVEDR---ENKKVG 473
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKEL-------TELEAEIEELEERLEEAEEELA---EAEAEIEELEAQIEQLKEElkaLREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 474 NFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMlvme 553
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER---- 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 554 DQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLetfKDRMTEESKVEAELHAER 633
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL---QERLSEEYSLTLEEAEAL 959
|
330 340 350
....*....|....*....|....*....|....
gi 2462572048 634 IEalrkqfqtERETTKKVAQREVAeQIEKELKQM 667
Cdd:TIGR02168 960 EN--------KIEDDEEEARRRLK-RLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
433-706 |
1.23e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 433 LERSKEELSRTVKCRNaalKESQKLKEDLEAVEDRENKKVGNFQRQLaeaKEDNCKVTIMLENVLASHS-------KMQG 505
Cdd:TIGR02169 249 LEEELEKLTEEISELE---KRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIAekereleDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 506 ALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEdqhnSEIESLQKALGVAREDNRKLAMSLEQAL 585
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR----AELEEVDKEFAETRDELKDYREKLEKLK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 586 QTNNHLQTKLDHIQEQLESKELERQNLEtfkdrmteeskveaelhaERIEALRKQfQTERETTKKVAQREVAEQiEKELK 665
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLN------------------AAIAGIEAK-INELEEEKEDKALEIKKQ-EWKLE 458
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2462572048 666 QMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQ 706
Cdd:TIGR02169 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
513-811 |
1.43e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 513 ELGRRdseIAGLKKERDlNQQRVQKLEAEVDQWQARMLVMEDQHnseiesLQKALGVAREDNRKLAMSLEQALQTNNHLQ 592
Cdd:COG1196 197 ELERQ---LEPLERQAE-KAERYRELKEELKELEAELLLLKLRE------LEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 593 TKLDHIQEQLESKELERQNLEtfKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKD 672
Cdd:COG1196 267 AELEELRLELEELELELEEAQ--AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 673 QYQKKNYEQSLSIQrfvcEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATE 752
Cdd:COG1196 345 ELEEAEEELEEAEA----ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 753 NTLKEASVESEQITANLEEAHRWFKHRFDG-LQLELTKNRLQRPSGEDRWQEKDQDVKHD 811
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEeAELEEEEEALLELLAELLEEAALLEAALA 480
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
32-767 |
2.08e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 32 LKDRLNAIQEEHSKDLKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKM-NLKI 110
Cdd:pfam15921 90 LQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMlEDSN 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 111 QEVHILQQNCIALRDSIQSAQELLAQ-EQKKKEELEIATSQLKSDLTSRDDLISKLVEENKVLNDQLTKKCSELSCMLQT 189
Cdd:pfam15921 170 TQIEQLRKMMLSHEGVLQEIRSILVDfEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEA 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 190 VTMEKARIIadhQAILQVEQKMMTQTFQEQNLLLdaahASITNELQTVQNEKTQLQAHLDhlILEhnqciQKAQDAEKRT 269
Cdd:pfam15921 250 LKSESQNKI---ELLLQQHQDRIEQLISEHEVEI----TGLTEKASSARSQANSIQSQLE--IIQ-----EQARNQNSMY 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 270 AVQKELLESTIARLRGELeasmqekkslleekerfqREVNKTEKEIVQErcnLEKELAKNKVDINTLTHNLQTLEEENKH 349
Cdd:pfam15921 316 MRQLSDLESTVSQLRSEL------------------REAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 350 LADQmasleLQQVTSDYHglAQQKVEKITESKNKLAYENGklqikvkqleeqvqsfTDTSLQNDHLRKMNKYLQTKYAQV 429
Cdd:pfam15921 375 LDDQ-----LQKLLADLH--KREKELSLEKEQNKRLWDRD----------------TGNSITIDHLRRELDDRNMEVQRL 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 430 KSILERSKEELSRTVKCRNAALkesQKLKEDLEAVEDReNKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEK 509
Cdd:pfam15921 432 EALLKAMKSECQGQMERQMAAI---QGKNESLEKVSSL-TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 510 VQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQaRMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNN 589
Cdd:pfam15921 508 KERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR-NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAG 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 590 HLQTKLDHIQEQLESKELERQNLETFKDRmtEESKVeaelhaeriealrkqfqteRETTKKVAQREV--AEQIEKELKQM 667
Cdd:pfam15921 587 AMQVEKAQLEKEINDRRLELQEFKILKDK--KDAKI-------------------RELEARVSDLELekVKLVNAGSERL 645
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 668 ELIKDQYQKKNYEQSlSIQRFVCEMTNLQKEMQMLAKsqydaSVRNKQQELHLEAErKIRQELENRCQELEETVRHLKKC 747
Cdd:pfam15921 646 RAVKDIKQERDQLLN-EVKTSRNELNSLSEDYEVLKR-----NFRNKSEEMETTTN-KLKMQLKSAQSELEQTRNTLKSM 718
|
730 740
....*....|....*....|
gi 2462572048 748 KEATENTLKEASVESEQITA 767
Cdd:pfam15921 719 EGSDGHAMKVAMGMQKQITA 738
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
287-615 |
7.08e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 7.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 287 LEASMQEKKSLLEE--------------------------------------KERFQREVNKTEK--EIVQERCNLEKEL 326
Cdd:TIGR02168 150 IEAKPEERRAIFEEaagiskykerrketerklertrenldrledilnelerqLKSLERQAEKAERykELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 327 AKNkvDINTLTHNLQTLEEENKHLADQMASLELQQVTSDyhglaqqkvEKITESKNKLAYENGKLQIKVKQLEEQVQSFT 406
Cdd:TIGR02168 230 LVL--RLEELREELEELQEELKEAEEELEELTAELQELE---------EKLEELRLEVSELEEEIEELQKELYALANEIS 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 407 DTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELsrtvKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDN 486
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKL----DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 487 CKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVME-DQHNSEIESLQK 565
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 2462572048 566 ALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETF 615
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
513-772 |
8.96e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 8.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 513 ELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEdqhnSEIESLQKALGVAREDNRKLAMSLEQalqtnnhLQ 592
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS----RKIGEIEKEIEQLEQEEEKLKERLEE-------LE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 593 TKLDHIQEQLESKELERQNLETFKDRMTEE--------SKVEAELHAERIEALRKQFQTERETTKKvaQREVAEQIEKEL 664
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDlhkleealNDLEARLSHSRIPEIQAELSKLEEEVSR--IEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 665 KQMELIKDQYQKknyeqslsiqrfvcEMTNLQKEMQMLaKSQyDASVRNKQQELHLEAERKIRQ--ELENRCQELEETVR 742
Cdd:TIGR02169 822 NRLTLEKEYLEK--------------EIQELQEQRIDL-KEQ-IKSIEKEIENLNGKKEELEEEleELEAALRDLESRLG 885
|
250 260 270
....*....|....*....|....*....|
gi 2462572048 743 HLKKCKEATENTLKEASVESEQITANLEEA 772
Cdd:TIGR02169 886 DLKKERDELEAQLRELERKIEELEAQIEKK 915
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
217-739 |
1.12e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 217 QEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTAVQKEL---LESTIARLRGELEASMQE 293
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERrreLEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 294 KKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMAslELQQVTSDYHGLAQQK 373
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR--AAAELAAQLEELEEAE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 374 VEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKE 453
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 454 SQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQ 533
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 534 RVQKLEAevdqwqarmLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQtnnhlqtKLDHIQEQLESKELERQNLE 613
Cdd:COG1196 570 KAGRATF---------LPLDKIRARAALAAALARGAIGAAVDLVASDLREADA-------RYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 614 TFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKDQYQKKNYEQSLSIQRfvcemt 693
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER------ 707
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 2462572048 694 nlQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEE 739
Cdd:COG1196 708 --ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
33-548 |
1.21e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 33 KDRLNAIQEEHSKDLKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKMNLKIQE 112
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 113 vhiLQQNCIALRDSIQSAQELLAQEQKKKEELEiatSQLKSDLTSRDDLISKLVEENKVLNDQLTKKCSELScmlqtvtm 192
Cdd:COG1196 335 ---LEEELEELEEELEEAEEELEEAEAELAEAE---EALLEAEAELAEAEEELEELAEELLEALRAAAELAA-------- 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 193 EKARIIADHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTAVQ 272
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 273 KELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLAD 352
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 353 QMAS------------LELQQVTSDYHGLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNK 420
Cdd:COG1196 561 AAIEylkaakagratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 421 YLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASH 500
Cdd:COG1196 641 TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 2462572048 501 SKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQAR 548
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
248-665 |
2.24e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 248 LDHLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNktekEIVQERCNLEKELA 327
Cdd:TIGR02169 644 LEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD----ELSQELSDASRKIG 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 328 KNKVDINTLTHNLQTLEEENKHLADQMASLElqqvtsdyhglaqQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTD 407
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLE-------------QEIENVKSELKELEARIEELEEDLHKLEEALNDLEA 786
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 408 tslqndhlrkmnKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDrenkKVGNFQRQLAEAKEDNC 487
Cdd:TIGR02169 787 ------------RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK----EIQELQEQRIDLKEQIK 850
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 488 KVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERD-------LNQQRVQKLEAEVDQWQARMLVMEDQ---HN 557
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDeleaqlrELERKIEELEAQIEKKRKRLSELKAKleaLE 930
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 558 SEIESLQKALGVAREDNRKLaMSLEQalqtnnhLQTKLDHIQEQLESKE----LERQNLETFKDRMTEESKVEAELHAER 633
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEE-LSLED-------VQAELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAKLEEER 1002
|
410 420 430
....*....|....*....|....*....|..
gi 2462572048 634 IEALRKQFQTEREttKKVAQREVAEQIEKELK 665
Cdd:TIGR02169 1003 KAILERIEEYEKK--KREVFMEAFEAINENFN 1032
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
518-764 |
2.28e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 518 DSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKAlgvAREDNRKLAMSLEQALQTNNHLQTKLDH 597
Cdd:pfam17380 338 EQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQME---RQQKNERVRQELEAARKVKILEEERQRK 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 598 IQEQLESKELERQNLETFKDRMTE--ESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKDQyQ 675
Cdd:pfam17380 415 IQQQKVEMEQIRAEQEEARQREVRrlEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQ-R 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 676 KKNYEQSLSIQRFvcEMTNLQKEMQMLAKSQYDasvrnKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTL 755
Cdd:pfam17380 494 RKILEKELEERKQ--AMIEEERKRKLLEKEMEE-----RQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERS 566
|
....*....
gi 2462572048 756 KEASVESEQ 764
Cdd:pfam17380 567 RLEAMERER 575
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
65-821 |
2.56e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 65 KEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKMNLKIQEVHILQQncialrdsIQSAQELLAQEQKKKEEL 144
Cdd:pfam02463 142 GKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEEL--------KLQELKLKEQAKKALEYY 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 145 EIATSQLKSDLTSRDDLISKLVEENKVLNDQLTKKCSELSCMLQTVTMEKARIIADHQAILQVEQKmmtqtfQEQNLLLD 224
Cdd:pfam02463 214 QLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK------EKKLQEEE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 225 AAHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEK--------RTAVQKELLESTIARLRGELEASMQEKKS 296
Cdd:pfam02463 288 LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELkkekeeieELEKELKELEIKREAEEEEEEELEKLQEK 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 297 LLEEKERFQREVNKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQ-VTSDYHGLAQQKVE 375
Cdd:pfam02463 368 LEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILeEEEESIELKQGKLT 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 376 KITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQ-TKYAQVKSILERSKEELSRTVKCRNAALKES 454
Cdd:pfam02463 448 EEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLeERSQKESKARSGLKVLLALIKDGVGGRIISA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 455 QKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQR 534
Cdd:pfam02463 528 HGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQ 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 535 VQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQL----ESKELERQ 610
Cdd:pfam02463 608 LDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELleiqELQEKAES 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 611 NLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKdqyqKKNYEQSLSIQRFVC 690
Cdd:pfam02463 688 ELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE----EEEEEKSRLKKEEKE 763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 691 EMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLE 770
Cdd:pfam02463 764 EEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK 843
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 2462572048 771 EAHRWFKHRFDGLQL---ELTKNRLQRPSGEDRWQEKDQDVKHDVMSNQSVLHR 821
Cdd:pfam02463 844 EEQKLEKLAEEELERleeEITKEELLQELLLKEEELEEQKLKDELESKEEKEKE 897
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
519-739 |
6.70e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 6.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 519 SEIAGLKKERDLNQQRVQKLEAEVDQWQARmlvmEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHI 598
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 599 QEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKkvAQREVAEQIEKELKQMELIKDQYQKKN 678
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAP--ARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462572048 679 YEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEE 739
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
53-576 |
7.03e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 7.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 53 KVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKMNLKIQEVHILQQNCIALRDSIQSAQE 132
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 133 LLAQEQKKKEELEIATSQL--KSDLTSRDDLISKLVEENKVLNDQL------TKKCSELSCMLQTV-TMEKARIIADHQA 203
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAkkKAEEKKKADEAKKKAEEDKKKADELkkaaaaKKKADEAKKKAEEKkKADEAKKKAEEAK 1444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 204 ILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQlqahLDHLILEHNQCIQKAQDAEKRTAVQKELLESTIARL 283
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK----ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 284 RGELEASMQEKKSLLEEKERFQREVNKTEKeiVQERCNLEKELAKNKVDintlthnLQTLEEENKHLADQMASlelqqvt 363
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKADEAKKAEEKKKADE--LKKAEELKKAEEKKKAE-------EAKKAEEDKNMALRKAE------- 1584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 364 sdyhgLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYA-QVKSILERSKEELSR 442
Cdd:PTZ00121 1585 -----EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAeEKKKAEELKKAEEEN 1659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 443 TVKCRNAALK--ESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEdnckvtimlenvlASHSKMQGALEKVQIELGRRDSE 520
Cdd:PTZ00121 1660 KIKAAEEAKKaeEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-------------AEELKKKEAEEKKKAEELKKAEE 1726
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462572048 521 IAGLKKERdlnqqrvQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRK 576
Cdd:PTZ00121 1727 ENKIKAEE-------AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
259-774 |
1.00e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 259 IQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIvqercNLEKELAKNKVDINTLTH 338
Cdd:PTZ00121 1193 LRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEER-----NNEEIRKFEEARMAHFAR 1267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 339 NLQTLEEENKHLADQMASLElqQVTSDYHGLAQQKVEKITESKNKlAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKM 418
Cdd:PTZ00121 1268 RQAAIKAEEARKADELKKAE--EKKKADEAKKAEEKKKADEAKKK-AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 419 NKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKvgnfqrqlAEAKEDNCKvtimlenvlA 498
Cdd:PTZ00121 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK--------KKAEEDKKK---------A 1407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 499 SHSKMQGALEKVQIELGRRDSEIaglKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKAlgvarEDNRKLA 578
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEK---KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA-----DEAKKKA 1479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 579 MSLEQAlqtnnhlqTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAEriEALRKQFQTERETTKKVAQREVAE 658
Cdd:PTZ00121 1480 EEAKKA--------DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD--EAKKAEEAKKADEAKKAEEKKKAD 1549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 659 QIEK--ELKQMELIKDQYQKKNYEQSLSIQ-RFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQ 735
Cdd:PTZ00121 1550 ELKKaeELKKAEEKKKAEEAKKAEEDKNMAlRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
|
490 500 510
....*....|....*....|....*....|....*....
gi 2462572048 736 ELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHR 774
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
214-673 |
1.40e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 214 QTFQEQNLLLDAaHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTavqkELLESTIARLRGELEASMQE 293
Cdd:PRK02224 234 ETRDEADEVLEE-HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERL----EELEEERDDLLAEAGLDDAD 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 294 KKSLLEEKERFQREVNKTEKEIVQERCNLEkelAKNKvDINTLTHNLQTLEEENKHLADQMASLElqqvtsdyhglaqqk 373
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQ---AHNE-EAESLREDADDLEERAEELREEAAELE--------------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 374 vEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKyaqvKSILERSKEELSRTVKCRNAALKE 453
Cdd:PRK02224 370 -SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE----RDELREREAELEATLRTARERVEE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 454 SQKLKE---------------DLEAVEDREnKKVGNFQRQLAEAKEDNCKVTIMLENvLASHSKMQGALEKVQIELGRRD 518
Cdd:PRK02224 445 AEALLEagkcpecgqpvegspHVETIEEDR-ERVEELEAELEDLEEEVEEVEERLER-AEDLVEAEDRIERLEERREDLE 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 519 SEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAmSLEQALQTNNHLQTKLDHI 598
Cdd:PRK02224 523 ELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA-ELKERIESLERIRTLLAAI 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 599 ----------QEQLESK-ELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQ--REVAEQ------ 659
Cdd:PRK02224 602 adaedeierlREKREALaELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEklDELREErddlqa 681
|
490
....*....|....*...
gi 2462572048 660 ----IEKELKQMELIKDQ 673
Cdd:PRK02224 682 eigaVENELEELEELRER 699
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
598-800 |
1.49e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 598 IQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVA------------EQIEKELK 665
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEEltaelqeleeklEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 666 QMELIKDQYQKKNYEQSLSIQRfvcemtnLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLK 745
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISR-------LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462572048 746 KCKEATENTLKEA---SVESEQITANLEEAHRWFKHRFDGLQLELTKNRLQRPSGEDR 800
Cdd:TIGR02168 351 EELESLEAELEELeaeLEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
41-771 |
2.44e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 41 EEHSKDLKLLHLKVMNLRQQLRAVKEEEDKA------QDEVQRLTATLKIAS---------QTKKNAAIIEEELKTTKRK 105
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAeryqalLKEKREYEGYELLKEkealerqkeAIERQLASLEEELEKLTEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 106 MNLKIQEVHILQQNCIALRDSIQS-AQELLAQEQKKKEELEIATSQLKSDLTSRDDLISKLVEENKVLNDQLTKKCSELS 184
Cdd:TIGR02169 260 ISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 185 CMLQTVTMEKARIIADHQAILQVEQKMMtqtfqeqnlLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQciqkAQD 264
Cdd:TIGR02169 340 ELEREIEEERKRRDKLTEEYAELKEELE---------DLRAELEEVDKEFAETRDELKDYREKLEKLKREINE----LKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 265 AEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKnkvdINTLTHNLQTLE 344
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE----LYDLKEEYDRVE 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 345 EENKHLADQMASLELQQVTSDYHGLAQQKVEKITESKNKLAYENGKLQIKVKqleEQVQSFTDTSLQNdhlRKMNKYLQT 424
Cdd:TIGR02169 483 KELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVG---ERYATAIEVAAGN---RLNNVVVED 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 425 KYAQVKSILERSKEELSRTV-----KCRnAALKESQKLKED------LEAVE-DRENKKVGNFQ-------RQLAEAKED 485
Cdd:TIGR02169 557 DAVAKEAIELLKRRKAGRATflplnKMR-DERRDLSILSEDgvigfaVDLVEfDPKYEPAFKYVfgdtlvvEDIEAARRL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 486 NCK---VTIMLENVLASHSKMQGALE---------KVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVME 553
Cdd:TIGR02169 636 MGKyrmVTLEGELFEKSGAMTGGSRAprggilfsrSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 554 dqhnSEIESLQKALGVAREDNRKLAMSLEQalqtnnhLQTKLDHIQEQLESKELERQNLETFKDRMTEE--------SKV 625
Cdd:TIGR02169 716 ----RKIGEIEKEIEQLEQEEEKLKERLEE-------LEEDLSSLEQEIENVKSELKELEARIEELEEDlhkleealNDL 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 626 EAELHAERIEALRKQFQTERETTKKvaQREVAEQIEKELKQMELIKDQYQKKnyeqslsIQRFVCEMTNLQKEMQMLAKS 705
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSR--IEARLREIEQKLNRLTLEKEYLEKE-------IQELQEQRIDLKEQIKSIEKE 855
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462572048 706 QYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEE 771
Cdd:TIGR02169 856 IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
53-781 |
2.77e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 53 KVMNLRQQLRAVKEEEDKAQDEVQRltatlkiASQTKKNAaiiEEELKTTKRKMNLKIQEVHILQQNCIALRDSIQSAQE 132
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAVKK-------AEEAKKDA---EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 133 LL-AQEQKKKEELEIATSQLKSDLTSRDDLISKLVEENKVLnDQLTKKCselscmlqtvtmEKARIIADhQAILQVEQKM 211
Cdd:PTZ00121 1277 ARkADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA-DEAKKKA------------EEAKKKAD-AAKKKAEEAK 1342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 212 MTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTAVQKELLEstiarlrgELEASM 291
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD--------ELKKAA 1414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 292 QEKKSLLEEKERFQrEVNKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSDYHGLAQ 371
Cdd:PTZ00121 1415 AAKKKADEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 372 QKVEKITESKNKlaYENGKLQIKVKQLEEQVQSftdtslqnDHLRKMNKYLQTKYAQvKSILERSKEELSRTVKCRNAal 451
Cdd:PTZ00121 1494 EAKKKADEAKKA--AEAKKKADEAKKAEEAKKA--------DEAKKAEEAKKADEAK-KAEEKKKADELKKAEELKKA-- 1560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 452 KESQKLKEDLEAVEDRENKkvgnfQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLN 531
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMA-----LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 532 QQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKAlgvarEDNRKLAMSLEQALQTNNHLQtkldhiqEQLESKELERQN 611
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA-----EEDKKKAEEAKKAEEDEKKAA-------EALKKEAEEAKK 1703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 612 LETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKDQYQKKNYEQSLSIQRFVCE 691
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 692 mtnlqkemqmlaksqydaSVRNKQQELHLEAERKIRQELENRCQELE---ETVRHLKKCKEATENTLKEASVESEQItan 768
Cdd:PTZ00121 1784 ------------------ELDEEDEKRRMEVDKKIKDIFDNFANIIEggkEGNLVINDSKEMEDSAIKEVADSKNMQ--- 1842
|
730
....*....|...
gi 2462572048 769 LEEAHRWFKHRFD 781
Cdd:PTZ00121 1843 LEEADAFEKHKFN 1855
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3-481 |
4.94e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 4.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 3 RLESLMQSLKMNIFRLQTEKDLNPQKTAFLKDRLNAIQEEHSKDLKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATL 82
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 83 KIASQTKKNAAIIEEELKTTKRKMNLKIQEVHILQQNCIALRDSIQSAQELLAQEQKKKEELEIATSQLKSDLTSRDDLI 162
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 163 SKLVEENKVLNDQLTKKcselscmLQTVTMEKARIIADHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKT 242
Cdd:COG1196 466 AELLEEAALLEAALAEL-------LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 243 QLQAHLDHLILEHN--------QCIQ--KAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTE 312
Cdd:COG1196 539 ALEAALAAALQNIVveddevaaAAIEylKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 313 KEIVQERCNLEKELAKNKVDINTLTHNLQTLEEEnkhladqmaSLELQQVTSDYHGLAQQKVEKITESKNKLAYENGKLQ 392
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE---------GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 393 IKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKV 472
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
....*....
gi 2462572048 473 GNFQRQLAE 481
Cdd:COG1196 770 ERLEREIEA 778
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
298-782 |
7.19e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 7.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 298 LEEKERFQREVNKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSDYHGLAQQKVEKI 377
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 378 TESKNklayengkLQIKVKQLEEQVQsftdtslqnDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKL 457
Cdd:COG4717 156 EELRE--------LEEELEELEAELA---------ELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 458 KEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQK 537
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 538 LEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQnletfKD 617
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQE-----IA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 618 RMTEESKVEAElhaERIEALRKQFQTERETTKKVAQREvaEQIEKELKQMELIKDQYQKKNYEQSLsiQRFVCEMTNLQK 697
Cdd:COG4717 374 ALLAEAGVEDE---EELRAALEQAEEYQELKEELEELE--EQLEELLGELEELLEALDEEELEEEL--EELEEELEELEE 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 698 EMQMLAKSQYDASVRNKQQELHLEAERKI--RQELENRCQELEETVRHLKKCKEATENTLKEAsvESEQITANLEEAHRW 775
Cdd:COG4717 447 ELEELREELAELEAELEQLEEDGELAELLqeLEELKAELRELAEEWAALKLALELLEEAREEY--REERLPPVLERASEY 524
|
....*..
gi 2462572048 776 FKHRFDG 782
Cdd:COG4717 525 FSRLTDG 531
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
35-540 |
1.03e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 35 RLNAIQEEHSKDLKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAaiiEEELKTTKRKMNLKIQEVH 114
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA---EEELEEAEAELAEAEEALL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 115 ILQQNCIALRDSIQSAQELLAQEQKKKEELEIATSQLKSDLTSRDDLISKLVEENKVLNDQLTKKCSELScMLQTVTMEK 194
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE-EEEEALEEA 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 195 ARIIADHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEhnqciqkAQDAEKRTAVQKE 274
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL-------EGVKAALLLAGLR 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 275 LLESTIARLRGELEAsmQEKKSLLEEKERFQREVNKTEkEIVQERCNLEKELAKNKVDI--NTLTHNLQTLEEENKHLAD 352
Cdd:COG1196 521 GLAGAVAVLIGVEAA--YEAALEAALAAALQNIVVEDD-EVAAAAIEYLKAAKAGRATFlpLDKIRARAALAAALARGAI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 353 QMASLELQQVTSDYHGLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKmnkyLQTKYAQVKSI 432
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL----TGGSRRELLAA 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 433 LERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQI 512
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
490 500
....*....|....*....|....*...
gi 2462572048 513 ELGRRDSEIAGLKKERDLNQQRVQKLEA 540
Cdd:COG1196 754 EELPEPPDLEELERELERLEREIEALGP 781
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
317-664 |
1.20e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.58 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 317 QERCNLEKELAKNKVDINT-LTHNLQTLEEENKHLADQMASLELQQVTSDYH--GLAQQKVEKITESKNK-LAYENGKLQ 392
Cdd:PLN02939 45 QQKKKRGKNIAPKQRSSNSkLQSNTDENGQLENTSLRTVMELPQKSTSSDDDhnRASMQRDEAIAAIDNEqQTNSKDGEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 393 IKVKQLEEQVQSFTDTSlqnDHLRKMNKYLQTKYAQVKSILeRSKEELSRTVKC-------RNAALKESQKLKEDLEAVE 465
Cdd:PLN02939 125 LSDFQLEDLVGMIQNAE---KNILLLNQARLQALEDLEKIL-TEKEALQGKINIlemrlseTDARIKLAAQEKIHVEILE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 466 DRENKKVGNFQRQLAEAKEDNCKV-----TIMLENVLAShSKMQgALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEA 540
Cdd:PLN02939 201 EQLEKLRNELLIRGATEGLCVHSLskeldVLKEENMLLK-DDIQ-FLKAELIEVAETEERVFKLEKERSLLDASLRELES 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 541 EVDQWQARMLVME----DQHNSEIESLQKALGVAREDNRKLAMSLEQalqtNNHLQTKLDHIQEQLESK----------E 606
Cdd:PLN02939 279 KFIVAQEDVSKLSplqyDCWWEKVENLQDLLDRATNQVEKAALVLDQ----NQDLRDKVDKLEASLKEAnvskfssykvE 354
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462572048 607 LERQNLETFKDRM---TEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKEL 664
Cdd:PLN02939 355 LLQQKLKLLEERLqasDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEF 415
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
514-794 |
2.45e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 514 LGR--RDSEIAGLKKERDLNQQRVQKLEAEVDQWQaRMLvmedQHNSEIESLQKALGVAREDNrklaMSLEQALQTNNHL 591
Cdd:PRK04863 779 FGRaaREKRIEQLRAEREELAERYATLSFDVQKLQ-RLH----QAFSRFIGSHLAVAFEADPE----AELRQLNRRRVEL 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 592 QTKLdhiqEQLESKELE-RQNLETFKDRMTEESKVEAEL-------HAERIEALRKQFQTERETTKKVAQREVA-EQIEK 662
Cdd:PRK04863 850 ERAL----ADHESQEQQqRSQLEQAKEGLSALNRLLPRLnlladetLADRVEEIREQLDEAEEAKRFVQQHGNAlAQLEP 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 663 EL-------KQMELIKDQYQKKNYEQSLSIQRfVCEMTNL---------QKEMQMLAKSQyDASVRNKQQELHLEAER-K 725
Cdd:PRK04863 926 IVsvlqsdpEQFEQLKQDYQQAQQTQRDAKQQ-AFALTEVvqrrahfsyEDAAEMLAKNS-DLNEKLRQRLEQAEQERtR 1003
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462572048 726 IRQEL---ENRCQELEETVRHLKKCKEATENTLKEASVESE----QITANLEEAHRwfkHRFDGLQLELTKNRLQR 794
Cdd:PRK04863 1004 AREQLrqaQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQdlgvPADSGAEERAR---ARRDELHARLSANRSRR 1076
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
247-757 |
2.80e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 247 HLDHLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRgELEASMQEKKSLLEEKERFQREVNKTEKEIVQ---ERCNLE 323
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREIN-EISSELPELREELEKLEKEVKELEELKEEIEElekELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 324 KELAKNKVDINTLTHNLQTLEEENKHLADQMASL-ELQQVTSDYHGLAQQKvEKITESKNKLAYENGKLQIKVKQLEEQV 402
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELkELKEKAEEYIKLSEFY-EEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 403 QSFTDTSLQNDHLRKMNKYLQTKYA-------------QVKSILERSKEELS-RTVKCRNAALKESQKLKEDLEAVEDRE 468
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELEKRLEeleerhelyeeakAKKEELERLKKRLTgLTPEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 469 NKKVGNFQRQLAEAKE---------DNCKVTIML------ENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERD---L 530
Cdd:PRK03918 411 TARIGELKKEIKELKKaieelkkakGKCPVCGRElteehrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvlK 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 531 NQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLA---MSLEQALQTNNHLQTKLDHIQEQLESKEL 607
Cdd:PRK03918 491 KESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKgeiKSLKKELEKLEELKKKLAELEKKLDELEE 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 608 ERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVaqrevaEQIEKELKQMELIKDQYQKKNYEQSLSIQR 687
Cdd:PRK03918 571 ELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKEL------EREEKELKKLEEELDKAFEELAETEKRLEE 644
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462572048 688 FVCEMTNLQKEMQmlakSQYDASVRNKQQELHLEAERKIRQ--ELENRCQELEETVRHLKKCKEATENTLKE 757
Cdd:PRK03918 645 LRKELEELEKKYS----EEEYEELREEYLELSRELAGLRAEleELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
581-806 |
3.01e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 581 LEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQT--------ERETTKKVA 652
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAierqlaslEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 653 QR-EVAEQIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQkemqmlakSQYDASVRNKQQELhleaerkirQELE 731
Cdd:TIGR02169 259 EIsELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEI--------ASLERSIAEKEREL---------EDAE 321
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462572048 732 NRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHRWFKHRFDGLQLELTKNRLQRPSGEDRWQEKDQ 806
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
87-771 |
5.76e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 87 QTKKNAAIIEEELKTTKRKMNLKIQEVHILQQNCIALRDSIQSAQELLAQEQKKKEELEIATSQLKSDLTSRDDLISKlv 166
Cdd:TIGR00618 177 QYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEE-- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 167 eenkvlNDQLTKKCSELSCMLQTVTMEKARIIADHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQA 246
Cdd:TIGR00618 255 ------QLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLM 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 247 HLDHLILehnqciQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKslleEKERFQREVNKTEKEIVQERCNLEKEL 326
Cdd:TIGR00618 329 KRAAHVK------QQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIS----CQQHTLTQHIHTLQQQKTTLTQKLQSL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 327 AKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTS-DYHGLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSF 405
Cdd:TIGR00618 399 CKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQqRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 406 TDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEEL-------------SRTVKCRNAALKESQKLKEDLEAVEDRENKKV 472
Cdd:TIGR00618 479 EQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPnparqdidnpgplTRRMQRGEQTYAQLETSEEDVYHQLTSERKQR 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 473 GNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEiagLKKERDLNQQRVQKLEAEVDQWQARMLVM 552
Cdd:TIGR00618 559 ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEA---EDMLACEQHALLRKLQPEQDLQDVRLHLQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 553 EDQHNSEIESL---QKALGVAREDNR-KLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAE 628
Cdd:TIGR00618 636 QCSQELALKLTalhALQLTLTQERVReHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 629 LHAERIEalrkQFQTERETTKKVAQREVAEQiEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYD 708
Cdd:TIGR00618 716 YDREFNE----IENASSSLGSDLAAREDALN-QSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFF 790
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462572048 709 ASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEE 771
Cdd:TIGR00618 791 NRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
27-567 |
6.89e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 6.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 27 QKTAFLKDRLNAIQEEHSKDLKllhlKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKK-------NAAIIEEEL 99
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLR----EINEISSELPELREELEKLEKEVKELEELKEEIEELEKeleslegSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 100 KTTKRKMNLKIQEVHILQQNCIALRDSIQSAQE------LLAQEQKKKEELEIATSQLKSDLTSRDDLISKLVEENKVLN 173
Cdd:PRK03918 262 RELEERIEELKKEIEELEEKVKELKELKEKAEEyiklseFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 174 dQLTKKCSELScmlqtvtMEKARIIADHQAILQVEQKmMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLIL 253
Cdd:PRK03918 342 -ELKKKLKELE-------KRLEELEERHELYEEAKAK-KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 254 EHNQCIQKAqdAEKRTAVQKELLESTIARLRGElEASMQEKKSLLEEkerFQREVNKTEKEIvQERCNLEKELAKNKVDI 333
Cdd:PRK03918 413 RIGELKKEI--KELKKAIEELKKAKGKCPVCGR-ELTEEHRKELLEE---YTAELKRIEKEL-KEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 334 NTLTHNLQTLeEENKHLADQMASLElqqvtSDYHGLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQND 413
Cdd:PRK03918 486 EKVLKKESEL-IKLKELAEQLKELE-----EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 414 HLRKMNKYLQTKYAQVKSILER----SKEELSRTVK------CRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAK 483
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEElgfeSVEELEERLKelepfyNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 484 EDNCKVTIMLENVLASHSKMQgaLEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEdQHNSEIESL 563
Cdd:PRK03918 640 KRLEELRKELEELEKKYSEEE--YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE-KAKKELEKL 716
|
....
gi 2462572048 564 QKAL 567
Cdd:PRK03918 717 EKAL 720
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
97-407 |
8.05e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 8.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 97 EELKTTKRKMNLKIQEVHILQQNCIALRDSIQSAQELLAQEQKKKEELEIATSQLKSDLTSRDDLISKLVEENKVLNDQL 176
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSEL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 177 TKKCSELSCMLQTVTMEKAriiadhqAILQVEQKMMTQTFQEqnllldaahasITNELQTVQNEKTQLQAHLDHLILEHN 256
Cdd:TIGR02169 761 KELEARIEELEEDLHKLEE-------ALNDLEARLSHSRIPE-----------IQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 257 QCIQKAQDAEKRTA---VQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVqercNLEKELAKNKVDI 333
Cdd:TIGR02169 823 RLTLEKEYLEKEIQelqEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG----DLKKERDELEAQL 898
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462572048 334 NTLTHNLQTLEEENKHLADQMASLE--LQQVTSDYHGLAQQKVEKITESKNKLAYEngKLQIKVKQLEEQVQSFTD 407
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKakLEALEEELSEIEDPKGEDEEIPEEELSLE--DVQAELQRVEEEIRALEP 972
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
504-668 |
8.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 8.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 504 QGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLvmeDQHNSEIESLQKALGVAREDNRKLAMSLEQ 583
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR---GNGGDRLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572048 584 ALQTNNHLQTKLDHIQEQLESKeleRQNLETFKDRMTEEskvEAELHAERIEALRKQFQTEREttkkvaqrevAEQIEKE 663
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAAL---RAEAAALLEALEEE---LEALEEALAEAEAALRDLRRE----------LRELEAE 427
|
....*
gi 2462572048 664 LKQME 668
Cdd:COG4913 428 IASLE 432
|
|
| |
