|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
736-1019 |
1.21e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 81.70 E-value: 1.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 736 EAIEYYEAAQKINGQDF-LCCDLGKLLLKLKKVNKAEKVLKQALEHDivqdipsmMNDVKCLLLLAKVYKSHKKeaviet 814
Cdd:COG2956 26 KAIDLLEEALELDPETVeAHLALGNLYRRRGEYDRAIRIHQKLLERD--------PDRAEALLELAQDYLKAGL------ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 815 LNKALDLQSRILKrvplEQPEMIPSQKQLAasiciqfaEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGH 894
Cdd:COG2956 92 LDRAEELLEKLLE----LDPDDAEALRLLA--------EIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 895 LDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrflslilDNFLVLHKLIDLLRRSGKLED 974
Cdd:COG2956 160 YDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP---------DYLPALPRLAELYEKLGDPEE 230
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462587863 975 ipaFFELAKKVSSRVPLEPGFNYCRGIYCwHIGQPNEALKFLNKA 1019
Cdd:COG2956 231 ---ALELLRKALELDPSDDLLLALADLLE-RKEGLEAALALLERQ 271
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
5-699 |
2.56e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.28 E-value: 2.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 5 DSSLMAGIIYYSQEKYfhhvQQAAAV---GLEKFSNDPVLKFFKAYGVLKEEHIQDAISDLESIR----HHPDVSLcsTM 77
Cdd:TIGR02917 194 DALLLKGDLLLSLGNI----ELALAAyrkAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLkkapNSPLAHY--LK 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 78 ALI-YAHKRCEiidrEAIQELEYSLKEIRKTVsgTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLT 156
Cdd:TIGR02917 268 ALVdFQKKNYE----DARETLQDALKSAPEYL--PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 157 SDKPHTAKKAIEYLEQGIQDTKDVLGLMGKAmyFMMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEM 236
Cdd:TIGR02917 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEA--YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIAD 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 237 GHRILEKDESNIDACQILTVHELaREGNMttatNHVRNLIKALETREPENPSLHLKkiivvsrlcgshqvilglvcsfie 316
Cdd:TIGR02917 420 LETAAQLDPELGRADLLLILSYL-RSGQF----DKALAAAKKLEKKQPDNASLHNL------------------------ 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 317 rtfmatpsyvhvateLGYLFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEflKEVQKSLGKS 396
Cdd:TIGR02917 471 ---------------LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE--KVLTIDPKNL 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 397 EVLIFLQALLMSRKHkgEEETTALLKEAVELHFSSMQG-IPLGSEYFEKLDPYFLVCIAKEYLLFCPKQPRL-----PGQ 470
Cdd:TIGR02917 534 RAILALAGLYLRTGN--EEEAVAWLEKAAELNPQEIEPaLALAQYYLGKGQLKKALAILNEAADAAPDSPEAwlmlgRAQ 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 471 IVSPLLKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHc 550
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK- 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 551 lelgVSHNFQVR--DHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPSqrASILLELVEALRL 628
Cdd:TIGR02917 691 ----IAKSLQKQhpKAALGFELEGDLYLRQKDYPAAIQAYRKALKR----------------APS--SQNAIKLHRALLA 748
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462587863 629 NGELHEATKVMQDTINEfggTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQ 699
Cdd:TIGR02917 749 SGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE 816
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
314-1019 |
3.41e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 80.90 E-value: 3.41e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 314 FIERTFMATPSYVHVATELGYLFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEFLkeVQKSL 393
Cdd:TIGR02917 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL--LKKAP 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 394 GKSEVLiFLQALLMSRKHKGEEETTALlKEAVELHFSSMQGIPLG--SEY----FEKLDPYFlvciaKEYLLFCPKQP-- 465
Cdd:TIGR02917 259 NSPLAH-YLKALVDFQKKNYEDARETL-QDALKSAPEYLPALLLAgaSEYqlgnLEQAYQYL-----NQILKYAPNSHqa 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 466 -RLPG--QIVSPLLKQVAVILNPVVKAAPalIDPLYL-MAQVRYY-SGELENAQSILQRCLELDPASVDAHLLMCQIYLA 540
Cdd:TIGR02917 332 rRLLAsiQLRLGRVDEAIATLSPALGLDP--DDPAALsLLGEAYLaLGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 541 QGNFGMCFHCLELGVSHNFQVRDhplYHLIKARALNKAGDYPEAIKTLKmviklpALKKEEGRKflrPSVQpSQRASILL 620
Cdd:TIGR02917 410 QGDPSEAIADLETAAQLDPELGR---ADLLLILSYLRSGQFDKALAAAK------KLEKKQPDN---ASLH-NLLGAIYL 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 621 ELVEALRLNGELHEATKVMQDTINEfggtpeenRITIANVDLvlSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQT 700
Cdd:TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPA--------AANLARIDI--QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 701 LRDR---RLYIRCYRE----------LCEHLpgphtsLLLGDaLMSILEAIEYYEAAQKINGQDFLCcdLGKLLLKLKKV 767
Cdd:TIGR02917 547 GNEEeavAWLEKAAELnpqeiepalaLAQYY------LGKGQ-LKKALAILNEAADAAPDSPEAWLM--LGRAQLAAGDL 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 768 NKAEKVLKQALEHDIVQDIPsmmndvkcLLLLAKVYKSHKK-EAVIETLNKALDL-----QSRILKRVPLEQPEMIPSQK 841
Cdd:TIGR02917 618 NKAVSSFKKLLALQPDSALA--------LLLLADAYAVMKNyAKAITSLKRALELkpdntEAQIGLAQLLLAAKRTESAK 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 842 QLAASICIQFAEH----------YLAEKEYDKAVQSYKDVFSYLPTDNKVMLeLAQLYLLQGHLDLCEQHCAILLQTEQN 911
Cdd:TIGR02917 690 KIAKSLQKQHPKAalgfelegdlYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPN 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 912 HETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrflslilDNFLVLHKLIDLLRRSgkleDIPAFFELAKKVSSRVPL 991
Cdd:TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP---------DNAVVLNNLAWLYLEL----KDPRALEYAERALKLAPN 835
|
730 740
....*....|....*....|....*...
gi 2462587863 992 EPGFNYCRGIYCWHIGQPNEALKFLNKA 1019
Cdd:TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
114-428 |
2.45e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.77 E-value: 2.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 114 YYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQDTKD-VLGLMGKAMYFMM 192
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEY---DRAIRIHQKLLERDPDrAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 193 QQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDACqiltvHELAREgnmttatnhv 272
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY-----CELAEL---------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 273 rnlikALETREPENPSLHLKKIIvvsrlcgshqvilglvcsfiertfMATPSYVHVATELGYLFILKNQVKEALLWYSEA 352
Cdd:COG2956 154 -----YLEQGDYDEAIEALEKAL------------------------KLDPDCARALLLLAELYLEQGDYEEAIAALERA 204
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462587863 353 MKLDKDGMAGLTGIILCHILEGHLEEAeyrLEFLKEVQKSLGKSEVLIFLQALLMsrKHKGEEETTALLKEAVELH 428
Cdd:COG2956 205 LEQDPDYLPALPRLAELYEKLGDPEEA---LELLRKALELDPSDDLLLALADLLE--RKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
482-744 |
1.03e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.84 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 482 ILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqv 561
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 562 RDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvqPSQRASILLELVEALRLNGELHEATKVMQD 641
Cdd:COG2956 107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-----------------GPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 642 TINEfggTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGP 721
Cdd:COG2956 170 ALKL---DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPSD 245
|
250 260
....*....|....*....|....*.
gi 2462587863 722 HTSLLLGDALMS---ILEAIEYYEAA 744
Cdd:COG2956 246 DLLLALADLLERkegLEAALALLERQ 271
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
507-1272 |
5.67e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.58 E-value: 5.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 507 SGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNFQVRDHplyHLIKARALNKAGDYPEAIK 586
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA---LLLKGDLLLSLGNIELALA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 587 TLKMVIKLpalkkeegrkflrpsvQPSQRASILLELVEALRLnGELHEATKVMQDTINEFGGTPEENRITiANVDLvlSK 666
Cdd:TIGR02917 215 AYRKAIAL----------------RPNNIAVLLALATILIEA-GEFEEAEKHADALLKKAPNSPLAHYLK-ALVDF--QK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 667 GNVDVALNMLRNILPKQSCYMEARE--KMANIYLQTLRDRRLYIRCYrelCEHLPGPHTSLLLgdaLMSIL-------EA 737
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLlaGASEYQLGNLEQAYQYLNQI---LKYAPNSHQARRL---LASIQlrlgrvdEA 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 738 IEYYEAAQKINGQDFLCCD-LGKLLLKLKKVNKAEKVLKQALEHDivqdipSMMNDVKCLLLLAKVYKSHKKEAvIETLN 816
Cdd:TIGR02917 349 IATLSPALGLDPDDPAALSlLGEAYLALGDFEKAAEYLAKATELD------PENAAARTQLGISKLSQGDPSEA-IADLE 421
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 817 KALDLQsrilkrvpleqPEMIPSQKQLAasiciqfaEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLD 896
Cdd:TIGR02917 422 TAAQLD-----------PELGRADLLLI--------LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLA 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 897 LCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrflslilDNFLVLHKLIDLLRRSGKledip 976
Cdd:TIGR02917 483 KAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP---------KNLRAILALAGLYLRTGN----- 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 977 affelakkvssrvplepgfnycrgiycwhigqPNEALKFLNKARKdstwgqsaiyhmvqicLNPDNEvvggeafenQGAE 1056
Cdd:TIGR02917 549 --------------------------------EEEAVAWLEKAAE----------------LNPQEI---------EPAL 571
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1057 S---NYMEKKELEQqgvstAEKLLREFyphSDSSQTQLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALA 1133
Cdd:TIGR02917 572 AlaqYYLGKGQLKK-----ALAILNEA---ADAAPDSPEAWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLLA 642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1134 QAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKE 1213
Cdd:TIGR02917 643 DAYAVMKNYAKAITSLKR------ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQ 716
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462587863 1214 QSYKDAVTNYKLAWKYSHHANPAIgfKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIR 1272
Cdd:TIGR02917 717 KDYPAAIQAYRKALKRAPSSQNAI--KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1058-1285 |
7.48e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.53 E-value: 7.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1058 NYMEKKELEQqgvstAEKLLREFYPHsDSSQTQLRLLQGLCRlatREKANMEAALGSFIQIAQAEKDSVPALLALAQAYV 1137
Cdd:COG2956 17 NYLLNGQPDK-----AIDLLEEALEL-DPETVEAHLALGNLY---RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1138 FLKQIPKARMQLKRLaktpwvLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYK 1217
Cdd:COG2956 88 KAGLLDRAEELLEKL------LELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462587863 1218 DAVTNYKLAWKYSHHANPAIgFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIREEILEKARKSLRP 1285
Cdd:COG2956 162 EAIEALEKALKLDPDCARAL-LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
852-1194 |
3.32e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.60 E-value: 3.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 852 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 931
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 932 AINLYHQVLEKAPawrflslilDNFLVLHKLIDLLRRSGKLEdipaffelakkvssrvplepgfnycrgiycwhigqpnE 1011
Cdd:COG2956 95 AEELLEKLLELDP---------DDAEALRLLAEIYEQEGDWE-------------------------------------K 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1012 ALKFLNKARKDStwGQSAIYHMVQiclnpdnevvgGEAfenqgaesnYMEKKELEQqgvstAEKLLREFYPHSDSSqtqL 1091
Cdd:COG2956 129 AIEVLERLLKLG--PENAHAYCEL-----------AEL---------YLEQGDYDE-----AIEALEKALKLDPDC---A 178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1092 RLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAktpwvlsEAEDLEKSWLL 1171
Cdd:COG2956 179 RALLLLAELYLEQG-DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLLA 250
|
330 340
....*....|....*....|...
gi 2462587863 1172 LADIYCQGSKFDLALELLRRCVQ 1194
Cdd:COG2956 251 LADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1007-1284 |
8.15e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.45 E-value: 8.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1007 GQPNEALKFLNKARKdstwgqsaiyhmvqicLNPDNEvvggEAFENQGaeSNYMEKKELEQqGVSTAEKLLrefyphsDS 1086
Cdd:COG2956 22 GQPDKAIDLLEEALE----------------LDPETV----EAHLALG--NLYRRRGEYDR-AIRIHQKLL-------ER 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1087 SQTQLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKtpwvlsEAEDLE 1166
Cdd:COG2956 72 DPDRAEALLELAQDYLKAG-LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK------LGPENA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1167 KSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgFKLAFNYL 1246
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL-PRLAELYE 223
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2462587863 1247 KDKKFVEAIEICNDVLREHPDYPKI--------REEILEKARKSLR 1284
Cdd:COG2956 224 KLGDPEEALELLRKALELDPSDDLLlaladlleRKEGLEAALALLE 269
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
664-942 |
1.89e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 66.29 E-value: 1.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 664 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSIL---EAIE 739
Cdd:COG2956 19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRR-RGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGlldRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 740 YYEAAQKINGQDFLC-CDLGKLLLKLKKVNKAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVY-KSHKKEAVIETLNK 817
Cdd:COG2956 98 LLEKLLELDPDDAEAlRLLAEIYEQEGDWEKAIEVLERLLKLGP--------ENAHAYCELAELYlEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 818 ALDLQsrilkrvpleqPEMIPSQKQLAasiciqfaEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDL 897
Cdd:COG2956 170 ALKLD-----------PDCARALLLLA--------ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462587863 898 CEQHCAILLQTEQNHETASVLmADLMFRKQKHEAAINLYHQVLEK 942
Cdd:COG2956 231 ALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRR 274
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
475-680 |
8.96e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.98 E-value: 8.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 475 LLKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELG 554
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 555 VSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPsQRASILLELVEALRLNGELHE 634
Cdd:COG2956 171 LKLD---PDCARALLLLAELYLEQGDYEEAIAALERALEQ----------------DP-DYLPALPRLAELYEKLGDPEE 230
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462587863 635 ATKVMQDTINEFGGTPEENRItianVDLVLSKGNVDVALNMLRNIL 680
Cdd:COG2956 231 ALELLRKALELDPSDDLLLAL----ADLLERKEGLEAALALLERQL 272
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
476-594 |
1.23e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 476 LKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGV 555
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 2462587863 556 SHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4783 100 KLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1059-1265 |
1.54e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.59 E-value: 1.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1059 YMEKKELEQqgvstAEKLLREFyphSDSSQTQLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVF 1138
Cdd:COG2956 86 YLKAGLLDR-----AEELLEKL---LELDPDDAEALRLLAEIYEQEG-DWEKAIEVLERLLKLGPENAHAYCELAELYLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1139 LKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKD 1218
Cdd:COG2956 157 QGDYDEAIEALEK------ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2462587863 1219 AVTNYKLAWKysHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREH 1265
Cdd:COG2956 231 ALELLRKALE--LDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
852-945 |
2.28e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.63 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 852 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 931
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|....
gi 2462587863 932 AINLYHQVLEKAPA 945
Cdd:COG4235 104 AIAAWQKLLALLPA 117
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
487-594 |
9.24e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.09 E-value: 9.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG3914 105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD---PDNAE 181
|
90 100
....*....|....*....|....*...
gi 2462587863 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
492-594 |
5.19e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.97 E-value: 5.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 492 ALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIK 571
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNL 78
|
90 100
....*....|....*....|...
gi 2462587863 572 ARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKL 101
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
487-594 |
1.45e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD---PDNPE 86
|
90 100
....*....|....*....|....*...
gi 2462587863 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
480-1269 |
1.81e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.94 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 480 AVI-LNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFgmcfhclelgvshn 558
Cdd:TIGR02917 41 AIIqLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKF-------------- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 559 fqvrdHPLYHLIKARALNKAGDYPEaIKTLKMVIKLPALKKEEGRKFLRPSVQPSQR-ASILLELVEALRLNGELHEATK 637
Cdd:TIGR02917 107 -----QQVLDELPGKTLLDDEGAAE-LLALRGLAYLGLGQLELAQKSYEQALAIDPRsLYAKLGLAQLALAENRFDEARA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 638 VMqDTIneFGGTPEENRITIANVDLVLSKGNVDVALNMLRNIL---PKQSCYmEAREKMANIYLQTLRDRRLYIRCYREL 714
Cdd:TIGR02917 181 LI-DEV--LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIalrPNNIAV-LLALATILIEAGEFEEAEKHADALLKK 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 715 CEHLPGPHTSlllgDALMS-----ILEAIEYYEAAQKINGQDFLCCDLGKLLLKlkkvnkAEKVLKQALEH--DIVQDIP 787
Cdd:TIGR02917 257 APNSPLAHYL----KALVDfqkknYEDARETLQDALKSAPEYLPALLLAGASEY------QLGNLEQAYQYlnQILKYAP 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 788 smmNDVKCLLLLAKVY-KSHKKEAVIETLNKALDLQSRIlkrvpleqpemiPSQKQLAASIciqfaehYLAEKEYDKAVQ 866
Cdd:TIGR02917 327 ---NSHQARRLLASIQlRLGRVDEAIATLSPALGLDPDD------------PAALSLLGEA-------YLALGDFEKAAE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 867 SYKDVFSYLPTDNKVMLELAQLYLLQGhldlceqhcaillqteqNHETAsvlMADLmfrkqkhEAAINLYHQVLEkapaw 946
Cdd:TIGR02917 385 YLAKATELDPENAAARTQLGISKLSQG-----------------DPSEA---IADL-------ETAAQLDPELGR----- 432
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 947 rflsliLDNFLVLHKLidllrRSGKLEDIPAffeLAKKVSSRVPLEP-GFNYCRGIYCWHiGQPNEALKFLNKARKdstw 1025
Cdd:TIGR02917 433 ------ADLLLILSYL-----RSGQFDKALA---AAKKLEKKQPDNAsLHNLLGAIYLGK-GDLAKAREAFEKALS---- 493
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1026 gqsaiyhmvqicLNPDNEvvggEAFENQgaeSNYMEKKELEQQGVSTAEKLLREfYPHSdssqtqLRLLQGLCRLATReK 1105
Cdd:TIGR02917 494 ------------IEPDFF----PAAANL---ARIDIQEGNPDDAIQRFEKVLTI-DPKN------LRAILALAGLYLR-T 546
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1106 ANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTpwvlseAEDLEKSWLLLADIYCQGSKFDLA 1185
Cdd:TIGR02917 547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA------APDSPEAWLMLGRAQLAAGDLNKA 620
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1186 LELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYK--LAWKySHHANPAIGfkLAFNYLKDKKFVEAIEICNDVLR 1263
Cdd:TIGR02917 621 VSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKraLELK-PDNTEAQIG--LAQLLLAAKRTESAKKIAKSLQK 697
|
....*.
gi 2462587863 1264 EHPDYP 1269
Cdd:TIGR02917 698 QHPKAA 703
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
844-984 |
3.27e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.66 E-value: 3.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 844 AASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLM 923
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462587863 924 FRKQKHEAAINLYHQVLEKAPawrflslilDNFLVLHKLIDLLRRSGKLEDIPAFFELAKK 984
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
878-1021 |
7.49e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 7.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 878 DNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrflslilDNFL 957
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPE 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462587863 958 VLHKLIDLLRRSGKLEDIPAFFELAKKVSsrvPLEPGFNYCRGIYCWHIGQPNEALKFLNKARK 1021
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1126-1268 |
1.36e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.12 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1126 VPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEY 1205
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEK------ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462587863 1206 MGFIMEKEQSYKDAVTNYKLAWKYsHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDY 1268
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
112-250 |
1.93e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.86 E-value: 1.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 112 ALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYF 190
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRY---EEALADYEQALElDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 191 MMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDA 250
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1073-1272 |
2.20e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.38 E-value: 2.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1073 AEKLLREFYPHSDSSQTQLRLLQGLCRLATREKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRL 1152
Cdd:COG3914 25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1153 aktpwvLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYsHH 1232
Cdd:COG3914 105 ------LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL-DP 177
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2462587863 1233 ANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIR 1272
Cdd:COG3914 178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
488-640 |
6.08e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.84 E-value: 6.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 488 KAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLY 567
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDFAEA 148
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462587863 568 HLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPsQRASILLELVEALRLNGELHEATKVMQ 640
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALEL----------------DP-DNAEALNNLGNALQDLGRLEEAIAAYR 204
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1103-1284 |
2.63e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.39 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1103 REKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKF 1182
Cdd:COG0457 19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ------ALELDPDDAEALNNLGLALQALGRY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1183 DLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHaNPAIGFKLAFNYLKDKKFVEAIEICNDVL 1262
Cdd:COG0457 93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPD-DADALYNLGIALEKLGRYEEALELLEKLE 171
|
170 180
....*....|....*....|..
gi 2462587863 1263 REHPDYPKIREEILEKARKSLR 1284
Cdd:COG0457 172 AAALAALLAAALGEAALALAAA 193
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
112-247 |
3.65e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.88 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 112 ALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYF 190
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDL---DEAIVLLHEALElDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462587863 191 MMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESN 247
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1107-1226 |
3.98e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.88 E-value: 3.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1107 NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLaktpwvLSEAEDLEKSWLLLADIYCQGSKFDLAL 1186
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPEARLNLGLALLKAGDYDEAL 92
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2462587863 1187 ELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLA 1226
Cdd:COG4783 93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
486-544 |
5.27e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.31 E-value: 5.27e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462587863 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 544
Cdd:COG4235 43 ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
43-250 |
7.41e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.34 E-value: 7.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 43 FFKAYGVLKEEHIQDAISDLES-IRHHPD-VSLCSTMALIYAhKRCEIidREAIQELEYSLKeiRKTVSGTALYYAGLFL 120
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEaLELDPEtVEAHLALGNLYR-RRGEY--DRAIRIHQKLLE--RDPDRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 121 WLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYFMMQQNYSEA 199
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW---EKAIEVLERLLKlGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462587863 200 LEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDA 250
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1116-1266 |
1.18e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1116 IQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTPWVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQY 1195
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462587863 1196 NKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYShHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHP 1266
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS-PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
486-594 |
1.22e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.08 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHP 565
Cdd:COG0457 34 ALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD---PDDA 110
|
90 100
....*....|....*....|....*....
gi 2462587863 566 LYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG0457 111 EALYNLGLALLELGRYDEAIEAYERALEL 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1110-1226 |
2.01e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1110 AALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELL 1189
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEK------ALRLDPDNADALLDLAEALLAAGDTEEAEELL 74
|
90 100 110
....*....|....*....|....*....|....*..
gi 2462587863 1190 RRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLA 1226
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1107-1194 |
2.26e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1107 NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLAL 1186
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER------ALALDPDNPEALYLLGLAAFQQGDYAEAI 105
|
....*...
gi 2462587863 1187 ELLRRCVQ 1194
Cdd:COG4235 106 AAWQKLLA 113
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
489-598 |
2.86e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 489 AAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYH 568
Cdd:COG5010 49 KLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS---PDNPNAY 125
|
90 100 110
....*....|....*....|....*....|
gi 2462587863 569 LIKARALNKAGDYPEAIKTLKMVIKLPALK 598
Cdd:COG5010 126 SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
852-944 |
3.23e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.18 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 852 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 931
Cdd:COG4783 45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
90
....*....|...
gi 2462587863 932 AINLYHQVLEKAP 944
Cdd:COG4783 125 AIAALEKALELDP 137
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
486-589 |
3.90e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.07 E-value: 3.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGM---CF-HCLELgVSHNFQV 561
Cdd:COG3914 138 ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEaiaAYrRALEL-DPDNADA 216
|
90 100
....*....|....*....|....*...
gi 2462587863 562 RDHPLYHLIKARALNKAGDYPEAIKTLK 589
Cdd:COG3914 217 HSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
517-594 |
4.02e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 4.02e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462587863 517 LQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD---PDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
487-594 |
4.79e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.54 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD---PDDAE 77
|
90 100
....*....|....*....|....*...
gi 2462587863 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALEL 105
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1169-1275 |
6.13e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 6.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1169 WLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYsHHANPAIGFKLAFNYLKD 1248
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDEPEARLNLGLALLKA 85
|
90 100
....*....|....*....|....*..
gi 2462587863 1249 KKFVEAIEICNDVLREHPDYPKIREEI 1275
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1164-1272 |
6.47e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.15 E-value: 6.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1164 DLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHaNPAIGFKLAF 1243
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD-DAEALNNLGL 84
|
90 100
....*....|....*....|....*....
gi 2462587863 1244 NYLKDKKFVEAIEICNDVLREHPDYPKIR 1272
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEAL 113
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
769-983 |
9.29e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 9.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 769 KAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVYKSHKK-EAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAASi 847
Cdd:COG0457 26 EAIEDYEKALELDP--------DDAEALYNLGLAYLRLGRyEEALADYEQALELD-----------PDDAEALNNLGLA- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 848 ciqfaehYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQ 927
Cdd:COG0457 86 -------LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462587863 928 KHEAAINLYHQVLEKAPAWRFLSLILDNFLVLHKLIDLLRRSGKLEDIPAFFELAK 983
Cdd:COG0457 159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
508-594 |
1.16e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 508 GELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHcLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKT 587
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLD---PNNAEALLNLAELLLELGDYDEALAY 81
|
....*..
gi 2462587863 588 LKMVIKL 594
Cdd:COG3063 82 LERALEL 88
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
855-947 |
1.20e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 855 YLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQhCAILLQTEQNHETASVLMADLMFRKQKHEAAIN 934
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 2462587863 935 LYHQVLEKAP-AWR 947
Cdd:COG3063 81 YLERALELDPsALR 94
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
863-953 |
1.31e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.07 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 863 KAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEK 942
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|....*
gi 2462587863 943 AP----AWRFLSLIL 953
Cdd:COG4235 81 DPdnpeALYLLGLAA 95
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
791-980 |
1.51e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.00 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 791 NDVKCLLLLAKVYKSHKK-EAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAASiciqfaehYLAEKEYDKAVQSYK 869
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRyEEAIEDYEKALELD-----------PDDAEALYNLGLA--------YLRLGRYEEALADYE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 870 DVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPawrfl 949
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP----- 141
|
170 180 190
....*....|....*....|....*....|.
gi 2462587863 950 slilDNFLVLHKLIDLLRRSGKLEDIPAFFE 980
Cdd:COG0457 142 ----DDADALYNLGIALEKLGRYEEALELLE 168
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
815-944 |
1.57e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 815 LNKALDLQSRILKRVPLEQPEMIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGH 894
Cdd:COG5010 24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2462587863 895 LDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAP 944
Cdd:COG5010 104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
500-635 |
1.76e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 45.57 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 500 MAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLElgvshnfqvrdhplyhlikaRALNKAG 579
Cdd:PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALE--------------------RVEEQDP 245
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462587863 580 DY-PEAIKTLKMVIKlpALKK-EEGRKFLRPSVQPSQRASILLELVEALRLNGELHEA 635
Cdd:PRK11788 246 EYlSEVLPKLMECYQ--ALGDeAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAA 301
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1150-1279 |
2.08e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1150 KRLAKTPwvlseaEDLEkSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKY 1229
Cdd:COG4235 8 QALAANP------NDAE-GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2462587863 1230 sHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIR--EEILEKA 1279
Cdd:COG4235 81 -DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARllEASIAEA 131
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
486-589 |
2.47e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.23 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHP 565
Cdd:COG0457 68 ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---PDDA 144
|
90 100
....*....|....*....|....
gi 2462587863 566 LYHLIKARALNKAGDYPEAIKTLK 589
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLE 168
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
736-918 |
4.61e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.60 E-value: 4.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 736 EAIEYYEAAQKINGQDFL-CCDLGKLLLKLKKVNKAEKVLKQALEHDivqdiPsmmNDVKCLLLLAKVYKSHKK-EAVIE 813
Cdd:COG3914 96 EALALYRRALALNPDNAEaLFNLGNLLLALGRLEEALAALRRALALN-----P---DFAEAYLNLGEALRRLGRlEEAIA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 814 TLNKALDLqsrilkrvpleQPEMIPSQKQLAASiciqfaehYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQG 893
Cdd:COG3914 168 ALRRALEL-----------DPDNAEALNNLGNA--------LQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
|
170 180
....*....|....*....|....*
gi 2462587863 894 HLDLCEQHCAILLQTEQNHETASVL 918
Cdd:COG3914 229 DWEVYDRFEELLAALARGPSELSPF 253
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1168-1277 |
4.83e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.56 E-value: 4.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1168 SWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgFKLAFNYLK 1247
Cdd:COG2956 10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL-LELAQDYLK 88
|
90 100 110
....*....|....*....|....*....|
gi 2462587863 1248 DKKFVEAIEICNDVLREHPDYPKIREEILE 1277
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
855-978 |
7.93e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.26 E-value: 7.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 855 YLAEKEYDKAVQSYKDVFSYLPTDNKVML-----ELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKH 929
Cdd:PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY 230
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2462587863 930 EAAINLYHQVLEKAPAwrFLSLILDnflvlhKLIDLLRRSGKLEDIPAF 978
Cdd:PRK11788 231 AAAIEALERVEEQDPE--YLSEVLP------KLMECYQALGDEAEGLEF 271
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
855-944 |
1.45e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 855 YLAEKEYDKAVQSYKDVFSYLPTDN---KVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETAS---VLMADLMFRKQK 928
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGD 82
|
90
....*....|....*.
gi 2462587863 929 HEAAINLYHQVLEKAP 944
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
858-922 |
1.47e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.33 E-value: 1.47e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462587863 858 EKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADL 922
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
92-201 |
2.07e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 92 EAIQELEYSLKEIRKtvSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLE 171
Cdd:COG4235 1 EAIARLRQALAANPN--DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDT---EEAEELLE 75
|
90 100 110
....*....|....*....|....*....|.
gi 2462587863 172 QGIQ-DTKDVLGLMGKAMYFMMQQNYSEALE 201
Cdd:COG4235 76 RALAlDPDNPEALYLLGLAAFQQGDYAEAIA 106
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
1067-1199 |
2.16e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 42.10 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1067 QQGVSTAEKLLRefyphSDSSQTQLRLLQGLCRLATREKA--NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPK 1144
Cdd:PRK11788 158 QKAIDVAERLEK-----LGGDSLRVEIAHFYCELAQQALArgDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462587863 1145 ARMQLKRLAKT-PWVLSEAEDlekswlLLADIYCQGSKFDLALELLRRCVQYNKSC 1199
Cdd:PRK11788 233 AIEALERVEEQdPEYLSEVLP------KLMECYQALGDEAEGLEFLRRALEEYPGA 282
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
507-544 |
2.38e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.56 E-value: 2.38e-03
10 20 30
....*....|....*....|....*....|....*...
gi 2462587863 507 SGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 544
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRL 38
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
91-244 |
2.43e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.25 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 91 REAIQELEYSLKEirKTVSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYL 170
Cdd:COG2956 127 EKAIEVLERLLKL--GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDY---EEAIAAL 201
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462587863 171 EQGI-QDTKDVLGLMGKAMYFMMQQNYSEALEVVNQItVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKD 244
Cdd:COG2956 202 ERALeQDPDYLPALPRLAELYEKLGDPEEALELLRKA-LELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
736-983 |
3.90e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 40.38 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 736 EAIEYYEAAQKINGQDF-LCCDLGKLLLKLKKVNKAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVYKSHKK-EAVIE 813
Cdd:COG0457 26 EAIEDYEKALELDPDDAeALYNLGLAYLRLGRYEEALADYEQALELDP--------DDAEALNNLGLALQALGRyEEALE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 814 TLNKALDLQSRIlkrvpleqpemipsqkqlaASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQG 893
Cdd:COG0457 98 DYDKALELDPDD-------------------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 894 HLDLCEQHCaillqtEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPAWRFLSLILDNFLVLHKLIDLLRRSGKLE 973
Cdd:COG0457 159 RYEEALELL------EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
|
250
....*....|
gi 2462587863 974 DIPAFFELAK 983
Cdd:COG0457 233 LRLAALALYQ 242
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1103-1278 |
5.26e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1103 REKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTPWVLSEAEDLEkswlllADIYCQGSKF 1182
Cdd:TIGR02917 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK------ALVDFQKKNY 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587863 1183 DLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIGFkLAFNYLKDKKFVEAIEICNDVL 1262
Cdd:TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL-LASIQLRLGRVDEAIATLSPAL 356
|
170 180
....*....|....*....|
gi 2462587863 1263 REHPDYPKIR----EEILEK 1278
Cdd:TIGR02917 357 GLDPDDPAALsllgEAYLAL 376
|
|
| |
