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Conserved domains on  [gi|2462587977|ref|XP_054201618|]
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dynein axonemal heavy chain 12 isoform X2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AAA_6 pfam12774
Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic ...
1238-1564 0e+00

Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities: AAA1-AAA6). This is the first site (out of four nucleotide binding sites in the dynein motor) where the movement depends on ATP hydrolysis. When this site is nucleotide free or bound to ADP, the microtubule binding domain (MTBD) binds to the microtubule and the linker adopts the straight post-power-stroke conformation. Upon ATP binding and hydrolysis, the MTBD detaches from the microtubule and the linker is primed into the pre-power-stroke conformation. Dynein's AAA+ domains are each divided into an alpha/beta large subdomain designated with an L and and alpha small subdomains designated with an S. This is the AAA1 large (AAA1L) subdomain with the accompanying small subdomain (AAA1S). AAA1L, AAA1S and AAA2L enclose ADP.vanadate (ADP.Vi, ATP-hydrolysis transition state analogue). The AAA1L sensor-I loop, which varies in position depending on dynein's nucleotide state, swings in to contact AAA2L forming the important AAA1 nucleotide-binding site.


:

Pssm-ID: 463697 [Multi-domain]  Cd Length: 327  Bit Score: 651.47  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1238 YAYEYLGNSPRLVITPLTDRCYRTLIGAFYLNLGGAPEGPAGTGKTETTKDLAKALAVQCVVFNCSDGLDYLAMGKFFKG 1317
Cdd:pfam12774    1 YGYEYLGNSGRLVITPLTDRCYLTLTQALHLHLGGAPAGPAGTGKTETVKDLAKALAKQVVVFNCSDGLDYKSMGRIFKG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1318 LASSGAWACFDEFNRIELEVLSVVAQQILCIQRAIQQKLVVFVFEGTELKLNPNCFVAITMNPGYAGRSELPDNLKVLFR 1397
Cdd:pfam12774   81 LAQCGAWGCFDEFNRIDIEVLSVVAQQILTIQQALAANLKTFVFEGSEIKLNPSCGIFITMNPGYAGRTELPDNLKALFR 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1398 TVAMMVPNYALIAEISLYSYGFLNARPLSVKIVMTYRLCSEQLSSQFHYDYGMRAVKAVLVAAGNLKLKYPNENEDILLL 1477
Cdd:pfam12774  161 PVAMMVPDYALIAEIMLFSEGFSDAKVLAKKLVTLYKLCSEQLSKQDHYDFGLRALKSVLVTAGSLKRSNPNLNEDVLLL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1478 RSIKDVNEPKFLSHDIPLFNGITSDLFPGIKLPEADYHEFLECAHEACNVHNLQPVKFFLEKIIQTYEMMIVRHGFMLVG 1557
Cdd:pfam12774  241 RALRDMNLPKLVADDVPLFLGLISDLFPGVELPPSDYGELEEAIEEVCKELGLQPHDAFILKVIQLYETMLVRHGVMLVG 320

                   ....*..
gi 2462587977 1558 EPFAAKT 1564
Cdd:pfam12774  321 PTGSGKT 327
DHC_N2 pfam08393
Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic ...
676-1110 2.27e-155

Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. This region is found C-terminal to the dynein heavy chain N-terminal region 1 (pfam08385) in many members of this family. No functions seem to have been attributed specifically to this region.


:

Pssm-ID: 462462 [Multi-domain]  Cd Length: 402  Bit Score: 488.31  E-value: 2.27e-155
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  676 LDKLKVNIEPYQKFFNFVLKWQRSEKRWMDGGFLDLNGESMEADVEEFSREIfktlkffqTKLKKELQEKRkaarkrsle 755
Cdd:pfam08393    1 LEEIKKELEPLKKLWDLVSEWQESLEEWKNGPFSDLDVEELEEELEEFLKEL--------KKLPKELRDWD--------- 63
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  756 eekieeepkdnatitMCSTVMEQIKAFKEYIPTVSILCNPGMRARHWKQISEIVGYDLTPDS-GTTLRKVLKLNLTPYLE 834
Cdd:pfam08393   64 ---------------VAEELKKKIDDFKKSLPLIEDLRNPALRERHWKQLSEILGFDFDPLSeFFTLGDLLDLNLHKYEE 128
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  835 QFEVISAGASKEFSLEKAMNTMIGTWEDIAFHISLYRDTGVCILSSVDEIQAILDDQIIKTQTMRGSPFIKPFEHEIKAW 914
Cdd:pfam08393  129 EIEEISEQASKEYSIEKALKKIEEEWKTMEFELVPYKDTGTFILKGWDEIQELLDDHLVKLQSMKSSPYVKPFEEEVSEW 208
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  915 EDRLIRIQETIDEWLKVQAQWLYLEPIFCSEDIMQQMPEEGRQFQTVDRHWRDIMKFCAKDPKVLAATSLTGLLEKLQNC 994
Cdd:pfam08393  209 EKKLSLLQEILDEWLKVQRKWLYLEPIFSSEDIRKQLPEEAKRFQNVDKEWKKIMKKAVKDPNVLEACNIPGLLEKLEEL 288
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  995 NELLEKIMKGLNAYLEKKRLFFPRFFFLSNDEMLEILSETKDPLRVQPHLKKCFEGIAKLEFLPNLDIKAMYSSEGERVE 1074
Cdd:pfam08393  289 NELLEKIQKSLNEYLEKKRLAFPRFYFLSNDELLEILSQTKDPTRVQPHLKKCFEGIASLEFDENKEITGMISKEGEVVP 368
                          410       420       430
                   ....*....|....*....|....*....|....*.
gi 2462587977 1075 LIAliSTSAARGAVEKWLIQVEDLMLRSVHDVIAAA 1110
Cdd:pfam08393  369 FSK--PPVEAKGNVEEWLNELEEEMRETLRDLLKEA 402
Dynein_C pfam18199
Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein ...
3634-3935 2.56e-146

Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading over the AAA1, AAA5 and AAA6 domain.


:

Pssm-ID: 465677  Cd Length: 301  Bit Score: 457.85  E-value: 2.56e-146
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3634 LQQTKTLFESLLLTQ--GGSKQTGASGSTDQILLEITKDILNKLPSDFDIEMALRKYPVRYEESMNTVLVQEMERFNNLI 3711
Cdd:pfam18199    1 TNETNELLSTLLSLQprSDSGGGGGGSSREEIVLELAKDILEKLPEPFDIEEAEEKYPVGYEDPLNTVLLQEIERFNKLL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3712 ITIRNTLRDLEKAIKGVVVMDSALEALSSSLLVGKVPEIWAKRSYPSLKPLGSYITDFLARLNFLQDWYN-SGKPCVFWL 3790
Cdd:pfam18199   81 KVIRRSLQDLQKAIKGLVVMSSELEELANSLLNGKVPESWAKKSYPSLKPLGSWIRDLLERLKQLQDWLDdEGPPKVFWL 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3791 SGFFFTQAFLTGAMQNYARKYTTPIDLLGYEFEV---IPSDTSDTSPEDGVYIHGLYLDGARWDRESGLLAEQYPKLLFD 3867
Cdd:pfam18199  161 SGFFFPQAFLTAVLQNYARKNGWPIDKLSFDFEVtkkVSPEEVTEPPEDGVYVHGLFLEGARWDRKNGCLVESEPKELFS 240
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462587977 3868 LMPIIWIKPTQKSRI-IKSDAYVCPLYKTSERkgtlsttgHSTNFVIAMLLKTDQPTRHWIKRGVALLC 3935
Cdd:pfam18199  241 PLPVIHLKPVESDKKkLDENTYECPVYKTSER--------HSTNFVFSVDLPTDKPPDHWILRGVALLL 301
AAA_9 pfam12781
ATP-binding dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. ...
2873-3094 6.14e-129

ATP-binding dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the fifth AAA+ domain subdomain AAA5S. Structural analysis reveal that it is the coiled-coil buttress interface. The relative movement of AAA5S together with the stalk (AAA4S), is coupled to rearrangements in the AAA+ ring. Closure of the AAA1 site and the rigid body movement of AAA2-AAA4 force the AAA4/AAA5 interface to close and the AAA6L subdomain to rotate towards the ring centre. The AAA5S subdomain rotates as a unit together with AAA6L, and this movement pulls the buttress relative to the stalk.


:

Pssm-ID: 463702 [Multi-domain]  Cd Length: 222  Bit Score: 404.52  E-value: 6.14e-129
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2873 RAWNIAGLPTDTFSIDNGVIVNNCRRWPLMIDPQGQANKWIKNSEKENQLSVIKLSDSDYMRTLENCIQFGTPLLLENVG 2952
Cdd:pfam12781    1 REWNIQGLPNDELSIENAIIVTNSRRWPLLIDPQGQANKWIKNMEKDNGLKVTSFTDKNFLKTLENAIRFGKPLLIEDVG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2953 EELDPSLEPLLLRQTFKQGGIDCIRLGEVIIEYSFDFKFYITTKLRNPHYMPELATKVSLLNFMITPEGLEDQLLGIVVA 3032
Cdd:pfam12781   81 EELDPILDPVLLKEIFKGGGRKVIKLGDKEVDYNPNFRLYLTTKLPNPHYPPEVAAKVTLINFTVTRSGLEDQLLGIVVK 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462587977 3033 KERPELEEERNALILQSAANKKQLKDIEKKILETLSSSEGNILEDESAIKVLDSAKMMSNEI 3094
Cdd:pfam12781  161 KERPDLEEQRNELIKEIAENKKQLKELEDKLLELLSSSEGNILDDEELIETLETSKKTSEEI 222
AAA_8 pfam12780
P-loop containing dynein motor region D4; The 380 kDa motor unit of dynein belongs to the AAA ...
2246-2506 8.68e-127

P-loop containing dynein motor region D4; The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D4 ATP-binding region of the motor.


:

Pssm-ID: 463701 [Multi-domain]  Cd Length: 259  Bit Score: 400.06  E-value: 8.68e-127
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2246 MNLVIFRYVLEHLSRICRVLKQSGGNALLVGLGGSGRQSLTRLATSMAKMHIFQPEISKSYGMNEWREDMKGLLRNVGMK 2325
Cdd:pfam12780    1 MDLVLFRDALEHLCRICRILRQPRGHALLVGVGGSGRQSLTKLAAFIAGYELFQIEVTRNYDMNEFREDLKKVLKKAGIK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2326 GQKTVFLITDTQIKEEAFLEDIDSVLNTGEVPNIFAADEKQEVMEGVRPVAQAGNKhdELSPLALFAFFVNRCKDNLHVV 2405
Cdd:pfam12780   81 GKPTVFLLSDTQIIEESFLEDINNLLNSGEVPNLFTDEEKEEIIESVRDDAKAQNI--EDSREAVYNYFVKRCRNNLHIV 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2406 VAFSPIGDAFRNRLRQFPSLINCCTIDWFQSWPEDALERVAVKFLETLELTEVEQQEIVPICKHFHTSIMDLSERFLHEL 2485
Cdd:pfam12780  159 LCMSPVGEAFRNRLRMFPSLVNCCTIDWFNEWPEEALLAVAEKFLEDIEIPEELKSNVVKVFVYVHSSVEDMSKKFYEEL 238
                          250       260
                   ....*....|....*....|.
gi 2462587977 2486 GRHNYVTATSYLELIGSFRQL 2506
Cdd:pfam12780  239 KRKNYVTPKSYLELLRLYKNL 259
DYN1 super family cl34955
Dynein, heavy chain [Cytoskeleton];
891-3584 1.31e-111

Dynein, heavy chain [Cytoskeleton];


The actual alignment was detected with superfamily member COG5245:

Pssm-ID: 227570 [Multi-domain]  Cd Length: 3164  Bit Score: 401.67  E-value: 1.31e-111
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  891 QIIKTQTMRGSPFIKP--FEHEIKAW----------EDRLIRIQETIDEWLKVQA-------QWLYLEPIFCS-EDIMQQ 950
Cdd:COG5245    564 GIVQLSGIRRAKRCVErqIDDEIREWcssvlsddflEERAVRVERGADGARRLRAssgspvlRRLDEYLMMMSlEDLMPL 643
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  951 MPEEGRQFQTVDRHWRDIMKFCakdpkVLAATSLTGLLEKLQNCNELLEKIMKGLNAYLEK--KRLFFPRFFFLSNDEML 1028
Cdd:COG5245    644 IPHAVHRKMSLVSGVRGIYKRV-----VSGCEAINTILEDVGDDLDLFYKEMDQVFMSIEKvlGLRWREVERASEVEELM 718
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1029 EILSETKDPLRVQPHLKKCFEGIAKLEFLPNLdIKAMYSSEGER---VELIALISTSAARGAVEKWLIQVEDLMLRSVHD 1105
Cdd:COG5245    719 DRVRELENRVYSYRFFVKKIAKEEMKTVFSSR-IQKKEPFSLDSeayVGFFRLYEKSIVIRGINRSMGRVLSQYLESVQE 797
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1106 VIAAARLAYpesarrdWVREWPGQVVLCISQMfWTSETQEVISggtEGLKKYYKELQnqlnEIVELVRGKLSKQTRTTLG 1185
Cdd:COG5245    798 ALEIEDGSF-------FVSRHRVRDGGLEKGR-GCDAWENCFD---PPLSEYFRILE----KIFPSEEGYFFDEVLKRLD 862
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1186 ALVTIDVHARDVVmDMIKMGVSHDTDFLWLAQLRYYWENENARVRIINCN--VKYAYEYLGNSPRLVITPLTDRCYRTLI 1263
Cdd:COG5245    863 PGHEIKSRIEEII-RMVTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSyrSAEMFAKNTIPFFVFEHSMDTSQHQKLF 941
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1264 GAFYLNLGGApegpAGTGKTETTKDLAKALAvqcvvfNCSDGLDYLAmgKFFKGLASSGAWAcFDEFNRIELEVLSVVAQ 1343
Cdd:COG5245    942 EAVCDEVCRF----VDTENSRVYGMLVAGKG------RIYDGTEPRS--RIEAGPICEEERG-TEESALLDEISRTILVD 1008
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1344 QILcIQRAIQ--QKLVVFVFEgtELKLNPNCFVAITMNPgyagRSELPDNLKVLFRTVAMMVPnYALIAEISlysygfln 1421
Cdd:COG5245   1009 EYL-NSDEFRmlEELNSAVVE--HGLKSPSTPVEMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSRR-------- 1072
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1422 aRPLSVKIVMTYRLCSEQLSSQFHYDYgmRAVKAVLVAAGNL---KLKYPNENEDILLLRSIKDVnepkflshdiplfng 1498
Cdd:COG5245   1073 -ESLDREIGAFNNEVDGIAREEDELMF--YPMFKSLKAKHRMleeKTEYLNKILSITGLPLISDT--------------- 1134
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1499 itsdLFPGIKLPEADYHEFLECAHEACNVHNLQPVKFFLEKIIQTYEMMIVRHGFMLVGEPFAAKTKVLHVLADtltlmn 1578
Cdd:COG5245   1135 ----LRERIDTLDAEWDSFCRISESLKKYESQQVSGLDVAQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTDACD------ 1204
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1579 ehgYGEEEKVIYRTVNPKSITMgQLFGQFDPVSHEWTDGIVANTfrefalsetpdRKWVVFDGpidtlWIESMNTVLDDN 1658
Cdd:COG5245   1205 ---YLWHVKSPYVKKKYFDADM-ELRQFFLMFNREDMEARLADS-----------KMEYEVER-----YVEKTKAEVSSL 1264
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1659 KKLCLMSGEiiqmspqMSLIFETMDlsqASPATVSRCGMIYLEPSQLGWEPLVSSWLNSLKGPL--CEPEYQALLrglFA 1736
Cdd:COG5245   1265 KLELSSVGE-------GQVVVSNLG---SIGDKVGRCLVEYDSISRLSTKGVFLDELGDTKRYLdeCLDFFSCFE---EV 1331
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1737 WLIPPSLNQrkKKCKELIPTSNSNVVVSLTRLFEVLLCNVveNDPTS--------------KHIRVWIMACFIFSLIWSI 1802
Cdd:COG5245   1332 QKEIDELSM--VFCADALRFSADLYHIVKERRFSGVLAGS--DASESlggksielaailehKDLIVEMKRGINDVLKLRI 1407
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1803 GGSCDTDGRRVFdTFIRLIILGKDDEnpvpdsvgkwECPFDEKGLVYDYMYELKNKgrwvHWNELIKNTNLGDKQIKIQD 1882
Cdd:COG5245   1408 FGDKCRESTPRF-YLISDGDLIKDLN----------ERSDYEEMLIMMFNISAVIT----NNGSIAGFELRGERVMLRKE 1472
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1883 IIVPTMDTIRYTFLMDLSITYAKPLLFVGPTGTGKSVYVKDKLMNHLEKDQyfpFYINLSARTSANQVQNIIMARLDKRR 1962
Cdd:COG5245   1473 VVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEV---KYFNFSTCTMTPSKLSVLERETEYYP 1549
                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1963 KG----VFGPPMGKKCIIFIDDMNMPALEKYGAQPPIELLRQFFD-CGHWYDLkDTSKITLVDIELIAAMGPPGG-GRNP 2036
Cdd:COG5245   1550 NTgvvrLYPKPVVKDLVLFCDEINLPYGFEYYPPTVIVFLRPLVErQGFWSSI-AVSWVTICGIILYGACNPGTDeGRVK 1628
                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2037 VTPRCIRHFNICSINSFSDETMVRIFSsivAFYLRTHEFPPEYFVIGNQIVNGTMEIYKQSVENLlPTPTKSHYTFNLRD 2116
Cdd:COG5245   1629 YYERFIRKPVFVFCCYPELASLRNIYE---AVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKT-KFFLQMNYGYKPRE 1704
                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2117 FSRVIRGCL-LIERDAVANKHTMIRLFVHEVLRVFYDRLINDDDRRWLFQ-LTKTVIKDhfkesfhsifshLRKQNAPVT 2194
Cdd:COG5245   1705 LTRSLRAIFgYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQdLYDFGLRA------------IREMIAGHI 1772
                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2195 EEdlRNLMFGDYMNPDLE----GDDRVYIEipniHHFSDVVDQCLDeynqthktrMNLVIFRYVLEHLSRICRVLKQSGG 2270
Cdd:COG5245   1773 GE--AEITFSMILFFGMAcllkKDLAVFVE----EVRKIFGSSHLD---------VEAVAYKDALLHILRSRRGLLVVGG 1837
                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2271 NALLVGLGGSGRQSLTRLATSMAKMHIFQPEISKSYGMNEWREDMKGLLRNVGMKGQKTVFLITDTQIKEEAFLEDIDSV 2350
Cdd:COG5245   1838 HGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRDELTGDFRDSLKVQDLRRNIHGGRECLFIFESIPVESSFLEDFNPL 1917
                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2351 LNTGEVPNIFAADEKQEVMEGVRPVAQA-GNKHDelSPLALFAFFVNRCKDNLHVVV-AFSPIGDAFRNRLRqFPSLINC 2428
Cdd:COG5245   1918 LDNNRFLCLFSGNERIRIPENLRFVFEStSLEKD--TEATLTRVFLVYMEENLPVVFsACCSQDTSVLAGIR-SPALKNR 1994
                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2429 CTIDWFQSWPEDALERVA-------------------VKFLETLELTEVEQQEIVPIckhfHTSIMdlsERFLHElgRHN 2489
Cdd:COG5245   1995 CFIDFKKLWDTEEMSQYAnsvetlsrdggrvffingeLGVGKGALISEVFGDDAVVI----EGRGF---EISMIE--GSL 2065
                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2490 YVTATSYLELIGSFRQLLTQKRQAVMEAKQRYMNGLDKLAFAESQVGEMQMELVELQPKLEEAKIENANMMQVIEIESVQ 2569
Cdd:COG5245   2066 GESKIKFIGGLKVYDARCVIYIEELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKNADDALSGTPGERLE 2145
                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2570 VEAKRQFVKLDEEIASGKAEEAQALKNECESDLAEAIPALEAALSALDTLKPADITIVKSMKNPPSGVKLVMAAVCvmkd 2649
Cdd:COG5245   2146 REVKSVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVC---- 2221
                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2650 ikpekisdpsgtggKILDY----WGPSKKLLGDMNFLRDLKEYD--KDNIPVAKASSAAEGLCKWIMAMEVYDRVAKVVA 2723
Cdd:COG5245   2222 --------------DLLGFeakiWFGEQQSLRRDDFIRIIGKYPdeIEFDLEARRFREARECSDPSFTGSILNRASKACG 2287
                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2724 PKKARL-SEAQKSLA-ETMELLNQ--KRAELaEVEHHLENLQ---------MTFLEKTEEKAAL--------EDQVELCA 2782
Cdd:COG5245   2288 PLKRWLvRECNRSKVlEVKIPLREeeKRIDG-EAFLVEDRLTlgkglssdlMTFKLRRRSYYSLdilrvhgkIADMDTVH 2366
                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2783 KKLERASQLIGGLGGEKSRWAQAADDLQITYENLTGDVLVSAGVIAYLGafTSGFRqtCTKDWSMLCKKkkipcseefLL 2862
Cdd:COG5245   2367 KDVLRSIFVSEILINEDSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIG--TLGFL--CRAIEFGMSFI---------RI 2433
                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2863 SKTLGDPVKIRAWNIAGL------------PTDTFSIDNGVIVNNCRRWPLMIDPQGQANKWIKNSEKENQLSVIKLSDS 2930
Cdd:COG5245   2434 SKEFRDKEIRRRQFITEGvqkiedfkeeacSTDYGLENSRIRKDLQDLTAVLNDPSSKIVTSQRQMYDEKKAILGSFREM 2513
                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2931 DYMRTLENCIQFGTPLLLEnVGEELDPSLEPLLLRQTFKQGGIDCIRLGEVIIEYSFDFKFYITTKLRNPHYMPELATKV 3010
Cdd:COG5245   2514 EFAFGLSQARREGSDKIIG-DAEALDEEIGRLIKEEFKSNLSEVKVMINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQL 2592
                         2250      2260      2270      2280      2290      2300      2310      2320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3011 SLLNFMITPEGLEDQLLGIVVAKERPELEEERNALILQSAANKKQLKDIEKKILETLSSSEGNILEDESAIKVLDSAKMM 3090
Cdd:COG5245   2593 IQVMFVSKVLGCETEIPDALEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKS 2672
                         2330      2340      2350      2360      2370      2380      2390      2400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3091 SNEITKKQQIAEKTELKIAESREGYRPIAKHSSVLFFSIADLAnidpmyqySLTWFVNLYINSIHDSNKsKILEKRLRYL 3170
Cdd:COG5245   2673 RKEIEEEESESMEIEDRIDALKSEYNASVKRLESIRVEIAMFD--------EKALMYNKSICELSSEFE-KWRRMKSKYL 2743
                         2410      2420      2430      2440      2450      2460      2470      2480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3171 NDHFTYNLYCNICrsLFEKDKLLFSFLLCANLLLARKeieyqELMFLLtggvslksaeknpdptwLQDKSWEEICRASEF 3250
Cdd:COG5245   2744 CAIRYMLMSSEWI--LDHEDRSGFIHRLDVSFLLRTK-----RFVSTL-----------------LEDKNYRQVLSSCSL 2799
                         2490      2500      2510      2520      2530      2540      2550      2560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3251 PAFrGLRQHFCEHIYewREIYDSKephnakfpapmdKNLNELQKIIILRcLRPDKITPAITNYVTDKLGKKFVEPPP--- 3327
Cdd:COG5245   2800 YGN-DVISHSCDRFD--RDVYRAL------------KHQMDNRTHSTIL-TSNSKTNPYKEYTYNDSWAEAFEVEDSgdl 2863
                         2570      2580      2590      2600      2610      2620      2630      2640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3328 FDLTKSYLD-SNCTIPLIFVLspgadpMASLlkfandksmsgnkfQAISLGQGQGPI-----AAKMIKAAIEEGTWVCLQ 3401
Cdd:COG5245   2864 YKFEEGLLElIVGHAPLIYAH------KKSL--------------ENERNVDRLGSKenevyAVLNSLFSRKEKSWFEVY 2923
                         2650      2660      2670      2680      2690      2700      2710      2720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3402 NCHLAVSWMPML--EKICEDFTSETCNSSFRLWLTSYPSSKFPVTILQNGVKMTNEPPTGLRLNLLQSYLTDP-VSDPEF 3478
Cdd:COG5245   2924 NISLSFGWFKRYveDVVYPIKASRVCGKVKNMWTSMVDADMLPIQLLIAIDSFVSSTYPETGCGYADLVEIDRyPFDYTL 3003
                         2730      2740      2750      2760      2770      2780      2790      2800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3479 FKGCRgkelawekLLFGVCFFHALVQERKKFGPLGWNIPYGFNESDLRISIRQLQ--LFINEYDTIPFEAISYLTGECNY 3556
Cdd:COG5245   3004 VIACD--------DAFYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKniLFLNHLNARKWGNNRDLIFTIVY 3075
                         2810      2820      2830
                   ....*....|....*....|....*....|..
gi 2462587977 3557 GGRVTDDWDRRLLLTML----ADFYNLYIVEN 3584
Cdd:COG5245   3076 GKKHSLMEDSKVVDKYCrgygAHETSSQILAS 3107
PRK03918 super family cl35229
DNA double-strand break repair ATPase Rad50;
591-752 5.72e-04

DNA double-strand break repair ATPase Rad50;


The actual alignment was detected with superfamily member PRK03918:

Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 46.21  E-value: 5.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  591 DELIENAKHKKE------NELMAKREKLILEIEKESRRMEE----FTEFAELERMQQYVT-DVRQLQKRIQESEEAVQFI 659
Cdd:PRK03918   192 EELIKEKEKELEevlreiNEISSELPELREELEKLEKEVKEleelKEEIEELEKELESLEgSKRKLEEKIRELEERIEEL 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  660 NKEEELFKwelTKYPELDKLKVNIEPYQKFFNFVLKWqRSEKRwmdggfldlNGESMEADVEEFSREIFKTLKFFQTKLK 739
Cdd:PRK03918   272 KKEIEELE---EKVKELKELKEKAEEYIKLSEFYEEY-LDELR---------EIEKRLSRLEEEINGIEERIKELEEKEE 338
                          170
                   ....*....|....*
gi 2462587977  740 K--ELQEKRKAARKR 752
Cdd:PRK03918   339 RleELKKKLKELEKR 353
 
Name Accession Description Interval E-value
AAA_6 pfam12774
Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic ...
1238-1564 0e+00

Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities: AAA1-AAA6). This is the first site (out of four nucleotide binding sites in the dynein motor) where the movement depends on ATP hydrolysis. When this site is nucleotide free or bound to ADP, the microtubule binding domain (MTBD) binds to the microtubule and the linker adopts the straight post-power-stroke conformation. Upon ATP binding and hydrolysis, the MTBD detaches from the microtubule and the linker is primed into the pre-power-stroke conformation. Dynein's AAA+ domains are each divided into an alpha/beta large subdomain designated with an L and and alpha small subdomains designated with an S. This is the AAA1 large (AAA1L) subdomain with the accompanying small subdomain (AAA1S). AAA1L, AAA1S and AAA2L enclose ADP.vanadate (ADP.Vi, ATP-hydrolysis transition state analogue). The AAA1L sensor-I loop, which varies in position depending on dynein's nucleotide state, swings in to contact AAA2L forming the important AAA1 nucleotide-binding site.


Pssm-ID: 463697 [Multi-domain]  Cd Length: 327  Bit Score: 651.47  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1238 YAYEYLGNSPRLVITPLTDRCYRTLIGAFYLNLGGAPEGPAGTGKTETTKDLAKALAVQCVVFNCSDGLDYLAMGKFFKG 1317
Cdd:pfam12774    1 YGYEYLGNSGRLVITPLTDRCYLTLTQALHLHLGGAPAGPAGTGKTETVKDLAKALAKQVVVFNCSDGLDYKSMGRIFKG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1318 LASSGAWACFDEFNRIELEVLSVVAQQILCIQRAIQQKLVVFVFEGTELKLNPNCFVAITMNPGYAGRSELPDNLKVLFR 1397
Cdd:pfam12774   81 LAQCGAWGCFDEFNRIDIEVLSVVAQQILTIQQALAANLKTFVFEGSEIKLNPSCGIFITMNPGYAGRTELPDNLKALFR 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1398 TVAMMVPNYALIAEISLYSYGFLNARPLSVKIVMTYRLCSEQLSSQFHYDYGMRAVKAVLVAAGNLKLKYPNENEDILLL 1477
Cdd:pfam12774  161 PVAMMVPDYALIAEIMLFSEGFSDAKVLAKKLVTLYKLCSEQLSKQDHYDFGLRALKSVLVTAGSLKRSNPNLNEDVLLL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1478 RSIKDVNEPKFLSHDIPLFNGITSDLFPGIKLPEADYHEFLECAHEACNVHNLQPVKFFLEKIIQTYEMMIVRHGFMLVG 1557
Cdd:pfam12774  241 RALRDMNLPKLVADDVPLFLGLISDLFPGVELPPSDYGELEEAIEEVCKELGLQPHDAFILKVIQLYETMLVRHGVMLVG 320

                   ....*..
gi 2462587977 1558 EPFAAKT 1564
Cdd:pfam12774  321 PTGSGKT 327
DHC_N2 pfam08393
Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic ...
676-1110 2.27e-155

Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. This region is found C-terminal to the dynein heavy chain N-terminal region 1 (pfam08385) in many members of this family. No functions seem to have been attributed specifically to this region.


Pssm-ID: 462462 [Multi-domain]  Cd Length: 402  Bit Score: 488.31  E-value: 2.27e-155
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  676 LDKLKVNIEPYQKFFNFVLKWQRSEKRWMDGGFLDLNGESMEADVEEFSREIfktlkffqTKLKKELQEKRkaarkrsle 755
Cdd:pfam08393    1 LEEIKKELEPLKKLWDLVSEWQESLEEWKNGPFSDLDVEELEEELEEFLKEL--------KKLPKELRDWD--------- 63
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  756 eekieeepkdnatitMCSTVMEQIKAFKEYIPTVSILCNPGMRARHWKQISEIVGYDLTPDS-GTTLRKVLKLNLTPYLE 834
Cdd:pfam08393   64 ---------------VAEELKKKIDDFKKSLPLIEDLRNPALRERHWKQLSEILGFDFDPLSeFFTLGDLLDLNLHKYEE 128
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  835 QFEVISAGASKEFSLEKAMNTMIGTWEDIAFHISLYRDTGVCILSSVDEIQAILDDQIIKTQTMRGSPFIKPFEHEIKAW 914
Cdd:pfam08393  129 EIEEISEQASKEYSIEKALKKIEEEWKTMEFELVPYKDTGTFILKGWDEIQELLDDHLVKLQSMKSSPYVKPFEEEVSEW 208
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  915 EDRLIRIQETIDEWLKVQAQWLYLEPIFCSEDIMQQMPEEGRQFQTVDRHWRDIMKFCAKDPKVLAATSLTGLLEKLQNC 994
Cdd:pfam08393  209 EKKLSLLQEILDEWLKVQRKWLYLEPIFSSEDIRKQLPEEAKRFQNVDKEWKKIMKKAVKDPNVLEACNIPGLLEKLEEL 288
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  995 NELLEKIMKGLNAYLEKKRLFFPRFFFLSNDEMLEILSETKDPLRVQPHLKKCFEGIAKLEFLPNLDIKAMYSSEGERVE 1074
Cdd:pfam08393  289 NELLEKIQKSLNEYLEKKRLAFPRFYFLSNDELLEILSQTKDPTRVQPHLKKCFEGIASLEFDENKEITGMISKEGEVVP 368
                          410       420       430
                   ....*....|....*....|....*....|....*.
gi 2462587977 1075 LIAliSTSAARGAVEKWLIQVEDLMLRSVHDVIAAA 1110
Cdd:pfam08393  369 FSK--PPVEAKGNVEEWLNELEEEMRETLRDLLKEA 402
Dynein_C pfam18199
Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein ...
3634-3935 2.56e-146

Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading over the AAA1, AAA5 and AAA6 domain.


Pssm-ID: 465677  Cd Length: 301  Bit Score: 457.85  E-value: 2.56e-146
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3634 LQQTKTLFESLLLTQ--GGSKQTGASGSTDQILLEITKDILNKLPSDFDIEMALRKYPVRYEESMNTVLVQEMERFNNLI 3711
Cdd:pfam18199    1 TNETNELLSTLLSLQprSDSGGGGGGSSREEIVLELAKDILEKLPEPFDIEEAEEKYPVGYEDPLNTVLLQEIERFNKLL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3712 ITIRNTLRDLEKAIKGVVVMDSALEALSSSLLVGKVPEIWAKRSYPSLKPLGSYITDFLARLNFLQDWYN-SGKPCVFWL 3790
Cdd:pfam18199   81 KVIRRSLQDLQKAIKGLVVMSSELEELANSLLNGKVPESWAKKSYPSLKPLGSWIRDLLERLKQLQDWLDdEGPPKVFWL 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3791 SGFFFTQAFLTGAMQNYARKYTTPIDLLGYEFEV---IPSDTSDTSPEDGVYIHGLYLDGARWDRESGLLAEQYPKLLFD 3867
Cdd:pfam18199  161 SGFFFPQAFLTAVLQNYARKNGWPIDKLSFDFEVtkkVSPEEVTEPPEDGVYVHGLFLEGARWDRKNGCLVESEPKELFS 240
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462587977 3868 LMPIIWIKPTQKSRI-IKSDAYVCPLYKTSERkgtlsttgHSTNFVIAMLLKTDQPTRHWIKRGVALLC 3935
Cdd:pfam18199  241 PLPVIHLKPVESDKKkLDENTYECPVYKTSER--------HSTNFVFSVDLPTDKPPDHWILRGVALLL 301
AAA_9 pfam12781
ATP-binding dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. ...
2873-3094 6.14e-129

ATP-binding dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the fifth AAA+ domain subdomain AAA5S. Structural analysis reveal that it is the coiled-coil buttress interface. The relative movement of AAA5S together with the stalk (AAA4S), is coupled to rearrangements in the AAA+ ring. Closure of the AAA1 site and the rigid body movement of AAA2-AAA4 force the AAA4/AAA5 interface to close and the AAA6L subdomain to rotate towards the ring centre. The AAA5S subdomain rotates as a unit together with AAA6L, and this movement pulls the buttress relative to the stalk.


Pssm-ID: 463702 [Multi-domain]  Cd Length: 222  Bit Score: 404.52  E-value: 6.14e-129
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2873 RAWNIAGLPTDTFSIDNGVIVNNCRRWPLMIDPQGQANKWIKNSEKENQLSVIKLSDSDYMRTLENCIQFGTPLLLENVG 2952
Cdd:pfam12781    1 REWNIQGLPNDELSIENAIIVTNSRRWPLLIDPQGQANKWIKNMEKDNGLKVTSFTDKNFLKTLENAIRFGKPLLIEDVG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2953 EELDPSLEPLLLRQTFKQGGIDCIRLGEVIIEYSFDFKFYITTKLRNPHYMPELATKVSLLNFMITPEGLEDQLLGIVVA 3032
Cdd:pfam12781   81 EELDPILDPVLLKEIFKGGGRKVIKLGDKEVDYNPNFRLYLTTKLPNPHYPPEVAAKVTLINFTVTRSGLEDQLLGIVVK 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462587977 3033 KERPELEEERNALILQSAANKKQLKDIEKKILETLSSSEGNILEDESAIKVLDSAKMMSNEI 3094
Cdd:pfam12781  161 KERPDLEEQRNELIKEIAENKKQLKELEDKLLELLSSSEGNILDDEELIETLETSKKTSEEI 222
AAA_8 pfam12780
P-loop containing dynein motor region D4; The 380 kDa motor unit of dynein belongs to the AAA ...
2246-2506 8.68e-127

P-loop containing dynein motor region D4; The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D4 ATP-binding region of the motor.


Pssm-ID: 463701 [Multi-domain]  Cd Length: 259  Bit Score: 400.06  E-value: 8.68e-127
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2246 MNLVIFRYVLEHLSRICRVLKQSGGNALLVGLGGSGRQSLTRLATSMAKMHIFQPEISKSYGMNEWREDMKGLLRNVGMK 2325
Cdd:pfam12780    1 MDLVLFRDALEHLCRICRILRQPRGHALLVGVGGSGRQSLTKLAAFIAGYELFQIEVTRNYDMNEFREDLKKVLKKAGIK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2326 GQKTVFLITDTQIKEEAFLEDIDSVLNTGEVPNIFAADEKQEVMEGVRPVAQAGNKhdELSPLALFAFFVNRCKDNLHVV 2405
Cdd:pfam12780   81 GKPTVFLLSDTQIIEESFLEDINNLLNSGEVPNLFTDEEKEEIIESVRDDAKAQNI--EDSREAVYNYFVKRCRNNLHIV 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2406 VAFSPIGDAFRNRLRQFPSLINCCTIDWFQSWPEDALERVAVKFLETLELTEVEQQEIVPICKHFHTSIMDLSERFLHEL 2485
Cdd:pfam12780  159 LCMSPVGEAFRNRLRMFPSLVNCCTIDWFNEWPEEALLAVAEKFLEDIEIPEELKSNVVKVFVYVHSSVEDMSKKFYEEL 238
                          250       260
                   ....*....|....*....|.
gi 2462587977 2486 GRHNYVTATSYLELIGSFRQL 2506
Cdd:pfam12780  239 KRKNYVTPKSYLELLRLYKNL 259
DYN1 COG5245
Dynein, heavy chain [Cytoskeleton];
891-3584 1.31e-111

Dynein, heavy chain [Cytoskeleton];


Pssm-ID: 227570 [Multi-domain]  Cd Length: 3164  Bit Score: 401.67  E-value: 1.31e-111
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  891 QIIKTQTMRGSPFIKP--FEHEIKAW----------EDRLIRIQETIDEWLKVQA-------QWLYLEPIFCS-EDIMQQ 950
Cdd:COG5245    564 GIVQLSGIRRAKRCVErqIDDEIREWcssvlsddflEERAVRVERGADGARRLRAssgspvlRRLDEYLMMMSlEDLMPL 643
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  951 MPEEGRQFQTVDRHWRDIMKFCakdpkVLAATSLTGLLEKLQNCNELLEKIMKGLNAYLEK--KRLFFPRFFFLSNDEML 1028
Cdd:COG5245    644 IPHAVHRKMSLVSGVRGIYKRV-----VSGCEAINTILEDVGDDLDLFYKEMDQVFMSIEKvlGLRWREVERASEVEELM 718
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1029 EILSETKDPLRVQPHLKKCFEGIAKLEFLPNLdIKAMYSSEGER---VELIALISTSAARGAVEKWLIQVEDLMLRSVHD 1105
Cdd:COG5245    719 DRVRELENRVYSYRFFVKKIAKEEMKTVFSSR-IQKKEPFSLDSeayVGFFRLYEKSIVIRGINRSMGRVLSQYLESVQE 797
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1106 VIAAARLAYpesarrdWVREWPGQVVLCISQMfWTSETQEVISggtEGLKKYYKELQnqlnEIVELVRGKLSKQTRTTLG 1185
Cdd:COG5245    798 ALEIEDGSF-------FVSRHRVRDGGLEKGR-GCDAWENCFD---PPLSEYFRILE----KIFPSEEGYFFDEVLKRLD 862
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1186 ALVTIDVHARDVVmDMIKMGVSHDTDFLWLAQLRYYWENENARVRIINCN--VKYAYEYLGNSPRLVITPLTDRCYRTLI 1263
Cdd:COG5245    863 PGHEIKSRIEEII-RMVTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSyrSAEMFAKNTIPFFVFEHSMDTSQHQKLF 941
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1264 GAFYLNLGGApegpAGTGKTETTKDLAKALAvqcvvfNCSDGLDYLAmgKFFKGLASSGAWAcFDEFNRIELEVLSVVAQ 1343
Cdd:COG5245    942 EAVCDEVCRF----VDTENSRVYGMLVAGKG------RIYDGTEPRS--RIEAGPICEEERG-TEESALLDEISRTILVD 1008
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1344 QILcIQRAIQ--QKLVVFVFEgtELKLNPNCFVAITMNPgyagRSELPDNLKVLFRTVAMMVPnYALIAEISlysygfln 1421
Cdd:COG5245   1009 EYL-NSDEFRmlEELNSAVVE--HGLKSPSTPVEMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSRR-------- 1072
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1422 aRPLSVKIVMTYRLCSEQLSSQFHYDYgmRAVKAVLVAAGNL---KLKYPNENEDILLLRSIKDVnepkflshdiplfng 1498
Cdd:COG5245   1073 -ESLDREIGAFNNEVDGIAREEDELMF--YPMFKSLKAKHRMleeKTEYLNKILSITGLPLISDT--------------- 1134
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1499 itsdLFPGIKLPEADYHEFLECAHEACNVHNLQPVKFFLEKIIQTYEMMIVRHGFMLVGEPFAAKTKVLHVLADtltlmn 1578
Cdd:COG5245   1135 ----LRERIDTLDAEWDSFCRISESLKKYESQQVSGLDVAQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTDACD------ 1204
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1579 ehgYGEEEKVIYRTVNPKSITMgQLFGQFDPVSHEWTDGIVANTfrefalsetpdRKWVVFDGpidtlWIESMNTVLDDN 1658
Cdd:COG5245   1205 ---YLWHVKSPYVKKKYFDADM-ELRQFFLMFNREDMEARLADS-----------KMEYEVER-----YVEKTKAEVSSL 1264
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1659 KKLCLMSGEiiqmspqMSLIFETMDlsqASPATVSRCGMIYLEPSQLGWEPLVSSWLNSLKGPL--CEPEYQALLrglFA 1736
Cdd:COG5245   1265 KLELSSVGE-------GQVVVSNLG---SIGDKVGRCLVEYDSISRLSTKGVFLDELGDTKRYLdeCLDFFSCFE---EV 1331
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1737 WLIPPSLNQrkKKCKELIPTSNSNVVVSLTRLFEVLLCNVveNDPTS--------------KHIRVWIMACFIFSLIWSI 1802
Cdd:COG5245   1332 QKEIDELSM--VFCADALRFSADLYHIVKERRFSGVLAGS--DASESlggksielaailehKDLIVEMKRGINDVLKLRI 1407
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1803 GGSCDTDGRRVFdTFIRLIILGKDDEnpvpdsvgkwECPFDEKGLVYDYMYELKNKgrwvHWNELIKNTNLGDKQIKIQD 1882
Cdd:COG5245   1408 FGDKCRESTPRF-YLISDGDLIKDLN----------ERSDYEEMLIMMFNISAVIT----NNGSIAGFELRGERVMLRKE 1472
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1883 IIVPTMDTIRYTFLMDLSITYAKPLLFVGPTGTGKSVYVKDKLMNHLEKDQyfpFYINLSARTSANQVQNIIMARLDKRR 1962
Cdd:COG5245   1473 VVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEV---KYFNFSTCTMTPSKLSVLERETEYYP 1549
                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1963 KG----VFGPPMGKKCIIFIDDMNMPALEKYGAQPPIELLRQFFD-CGHWYDLkDTSKITLVDIELIAAMGPPGG-GRNP 2036
Cdd:COG5245   1550 NTgvvrLYPKPVVKDLVLFCDEINLPYGFEYYPPTVIVFLRPLVErQGFWSSI-AVSWVTICGIILYGACNPGTDeGRVK 1628
                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2037 VTPRCIRHFNICSINSFSDETMVRIFSsivAFYLRTHEFPPEYFVIGNQIVNGTMEIYKQSVENLlPTPTKSHYTFNLRD 2116
Cdd:COG5245   1629 YYERFIRKPVFVFCCYPELASLRNIYE---AVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKT-KFFLQMNYGYKPRE 1704
                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2117 FSRVIRGCL-LIERDAVANKHTMIRLFVHEVLRVFYDRLINDDDRRWLFQ-LTKTVIKDhfkesfhsifshLRKQNAPVT 2194
Cdd:COG5245   1705 LTRSLRAIFgYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQdLYDFGLRA------------IREMIAGHI 1772
                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2195 EEdlRNLMFGDYMNPDLE----GDDRVYIEipniHHFSDVVDQCLDeynqthktrMNLVIFRYVLEHLSRICRVLKQSGG 2270
Cdd:COG5245   1773 GE--AEITFSMILFFGMAcllkKDLAVFVE----EVRKIFGSSHLD---------VEAVAYKDALLHILRSRRGLLVVGG 1837
                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2271 NALLVGLGGSGRQSLTRLATSMAKMHIFQPEISKSYGMNEWREDMKGLLRNVGMKGQKTVFLITDTQIKEEAFLEDIDSV 2350
Cdd:COG5245   1838 HGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRDELTGDFRDSLKVQDLRRNIHGGRECLFIFESIPVESSFLEDFNPL 1917
                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2351 LNTGEVPNIFAADEKQEVMEGVRPVAQA-GNKHDelSPLALFAFFVNRCKDNLHVVV-AFSPIGDAFRNRLRqFPSLINC 2428
Cdd:COG5245   1918 LDNNRFLCLFSGNERIRIPENLRFVFEStSLEKD--TEATLTRVFLVYMEENLPVVFsACCSQDTSVLAGIR-SPALKNR 1994
                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2429 CTIDWFQSWPEDALERVA-------------------VKFLETLELTEVEQQEIVPIckhfHTSIMdlsERFLHElgRHN 2489
Cdd:COG5245   1995 CFIDFKKLWDTEEMSQYAnsvetlsrdggrvffingeLGVGKGALISEVFGDDAVVI----EGRGF---EISMIE--GSL 2065
                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2490 YVTATSYLELIGSFRQLLTQKRQAVMEAKQRYMNGLDKLAFAESQVGEMQMELVELQPKLEEAKIENANMMQVIEIESVQ 2569
Cdd:COG5245   2066 GESKIKFIGGLKVYDARCVIYIEELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKNADDALSGTPGERLE 2145
                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2570 VEAKRQFVKLDEEIASGKAEEAQALKNECESDLAEAIPALEAALSALDTLKPADITIVKSMKNPPSGVKLVMAAVCvmkd 2649
Cdd:COG5245   2146 REVKSVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVC---- 2221
                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2650 ikpekisdpsgtggKILDY----WGPSKKLLGDMNFLRDLKEYD--KDNIPVAKASSAAEGLCKWIMAMEVYDRVAKVVA 2723
Cdd:COG5245   2222 --------------DLLGFeakiWFGEQQSLRRDDFIRIIGKYPdeIEFDLEARRFREARECSDPSFTGSILNRASKACG 2287
                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2724 PKKARL-SEAQKSLA-ETMELLNQ--KRAELaEVEHHLENLQ---------MTFLEKTEEKAAL--------EDQVELCA 2782
Cdd:COG5245   2288 PLKRWLvRECNRSKVlEVKIPLREeeKRIDG-EAFLVEDRLTlgkglssdlMTFKLRRRSYYSLdilrvhgkIADMDTVH 2366
                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2783 KKLERASQLIGGLGGEKSRWAQAADDLQITYENLTGDVLVSAGVIAYLGafTSGFRqtCTKDWSMLCKKkkipcseefLL 2862
Cdd:COG5245   2367 KDVLRSIFVSEILINEDSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIG--TLGFL--CRAIEFGMSFI---------RI 2433
                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2863 SKTLGDPVKIRAWNIAGL------------PTDTFSIDNGVIVNNCRRWPLMIDPQGQANKWIKNSEKENQLSVIKLSDS 2930
Cdd:COG5245   2434 SKEFRDKEIRRRQFITEGvqkiedfkeeacSTDYGLENSRIRKDLQDLTAVLNDPSSKIVTSQRQMYDEKKAILGSFREM 2513
                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2931 DYMRTLENCIQFGTPLLLEnVGEELDPSLEPLLLRQTFKQGGIDCIRLGEVIIEYSFDFKFYITTKLRNPHYMPELATKV 3010
Cdd:COG5245   2514 EFAFGLSQARREGSDKIIG-DAEALDEEIGRLIKEEFKSNLSEVKVMINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQL 2592
                         2250      2260      2270      2280      2290      2300      2310      2320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3011 SLLNFMITPEGLEDQLLGIVVAKERPELEEERNALILQSAANKKQLKDIEKKILETLSSSEGNILEDESAIKVLDSAKMM 3090
Cdd:COG5245   2593 IQVMFVSKVLGCETEIPDALEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKS 2672
                         2330      2340      2350      2360      2370      2380      2390      2400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3091 SNEITKKQQIAEKTELKIAESREGYRPIAKHSSVLFFSIADLAnidpmyqySLTWFVNLYINSIHDSNKsKILEKRLRYL 3170
Cdd:COG5245   2673 RKEIEEEESESMEIEDRIDALKSEYNASVKRLESIRVEIAMFD--------EKALMYNKSICELSSEFE-KWRRMKSKYL 2743
                         2410      2420      2430      2440      2450      2460      2470      2480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3171 NDHFTYNLYCNICrsLFEKDKLLFSFLLCANLLLARKeieyqELMFLLtggvslksaeknpdptwLQDKSWEEICRASEF 3250
Cdd:COG5245   2744 CAIRYMLMSSEWI--LDHEDRSGFIHRLDVSFLLRTK-----RFVSTL-----------------LEDKNYRQVLSSCSL 2799
                         2490      2500      2510      2520      2530      2540      2550      2560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3251 PAFrGLRQHFCEHIYewREIYDSKephnakfpapmdKNLNELQKIIILRcLRPDKITPAITNYVTDKLGKKFVEPPP--- 3327
Cdd:COG5245   2800 YGN-DVISHSCDRFD--RDVYRAL------------KHQMDNRTHSTIL-TSNSKTNPYKEYTYNDSWAEAFEVEDSgdl 2863
                         2570      2580      2590      2600      2610      2620      2630      2640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3328 FDLTKSYLD-SNCTIPLIFVLspgadpMASLlkfandksmsgnkfQAISLGQGQGPI-----AAKMIKAAIEEGTWVCLQ 3401
Cdd:COG5245   2864 YKFEEGLLElIVGHAPLIYAH------KKSL--------------ENERNVDRLGSKenevyAVLNSLFSRKEKSWFEVY 2923
                         2650      2660      2670      2680      2690      2700      2710      2720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3402 NCHLAVSWMPML--EKICEDFTSETCNSSFRLWLTSYPSSKFPVTILQNGVKMTNEPPTGLRLNLLQSYLTDP-VSDPEF 3478
Cdd:COG5245   2924 NISLSFGWFKRYveDVVYPIKASRVCGKVKNMWTSMVDADMLPIQLLIAIDSFVSSTYPETGCGYADLVEIDRyPFDYTL 3003
                         2730      2740      2750      2760      2770      2780      2790      2800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3479 FKGCRgkelawekLLFGVCFFHALVQERKKFGPLGWNIPYGFNESDLRISIRQLQ--LFINEYDTIPFEAISYLTGECNY 3556
Cdd:COG5245   3004 VIACD--------DAFYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKniLFLNHLNARKWGNNRDLIFTIVY 3075
                         2810      2820      2830
                   ....*....|....*....|....*....|..
gi 2462587977 3557 GGRVTDDWDRRLLLTML----ADFYNLYIVEN 3584
Cdd:COG5245   3076 GKKHSLMEDSKVVDKYCrgygAHETSSQILAS 3107
AAA_7 pfam12775
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 ...
1875-2053 2.85e-106

P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs).


Pssm-ID: 463698 [Multi-domain]  Cd Length: 179  Bit Score: 337.44  E-value: 2.85e-106
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1875 DKQIKIQDIIVPTMDTIRYTFLMDLSITYAKPLLFVGPTGTGKSVYVKDkLMNHLEKDQYFPFYINLSARTSANQVQNII 1954
Cdd:pfam12775    2 PPDVPFSEILVPTVDTVRYTYLLDLLLKNGKPVLLVGPTGTGKTVIIQN-LLRKLDKEKYLPLFINFSAQTTSNQTQDII 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1955 MARLDKRRKGVFGPPMGKKCIIFIDDMNMPALEKYGAQPPIELLRQFFDCGHWYDLKDTSKITLVDIELIAAMGPPGGGR 2034
Cdd:pfam12775   81 ESKLEKRRKGVYGPPGGKKLVVFIDDLNMPAVDTYGAQPPIELLRQWLDYGGWYDRKKLTFKEIVDVQFVAAMGPPGGGR 160
                          170
                   ....*....|....*....
gi 2462587977 2035 NPVTPRCIRHFNICSINSF 2053
Cdd:pfam12775  161 NDITPRLLRHFNVFNITFP 179
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
1886-2047 2.89e-07

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 52.92  E-value: 2.89e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1886 PTMDTIRYTFLMDLSITYAKPLLFVGPTGTGKSVYVKdKLMNHLEKDQYFPFYINLSARTSANQVQNIIMARLDKRRKGV 1965
Cdd:cd00009      1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLAR-AIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1966 FgpPMGKKCIIFIDDMN-MPALEKYGAQppiELLRQFFDcghwyDLKDTSKITLVdieLIAAMGPPGGGRNPVTPRCIRH 2044
Cdd:cd00009     80 A--EKAKPGVLFIDEIDsLSRGAQNALL---RVLETLND-----LRIDRENVRVI---GATNRPLLGDLDRALYDRLDIR 146

                   ...
gi 2462587977 2045 FNI 2047
Cdd:cd00009    147 IVI 149
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
2490-2620 2.37e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.83  E-value: 2.37e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2490 YVTATSYLELIGSFRQLLTQKRQAV--MEAKQRYMNGLD-KLAFAESQVGEMQMELVELQPKLEEAKIENANMMQVIEIE 2566
Cdd:TIGR02168  228 ALLVLRLEELREELEELQEELKEAEeeLEELTAELQELEeKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL 307
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462587977 2567 SVQVE-AKRQFVKLDEEIASG--KAEEAQALKNECESDLAEAIPALEAALSALDTLK 2620
Cdd:TIGR02168  308 RERLAnLERQLEELEAQLEELesKLDELAEELAELEEKLEELKEELESLEAELEELE 364
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
591-752 5.72e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 46.21  E-value: 5.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  591 DELIENAKHKKE------NELMAKREKLILEIEKESRRMEE----FTEFAELERMQQYVT-DVRQLQKRIQESEEAVQFI 659
Cdd:PRK03918   192 EELIKEKEKELEevlreiNEISSELPELREELEKLEKEVKEleelKEEIEELEKELESLEgSKRKLEEKIRELEERIEEL 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  660 NKEEELFKwelTKYPELDKLKVNIEPYQKFFNFVLKWqRSEKRwmdggfldlNGESMEADVEEFSREIFKTLKFFQTKLK 739
Cdd:PRK03918   272 KKEIEELE---EKVKELKELKEKAEEYIKLSEFYEEY-LDELR---------EIEKRLSRLEEEINGIEERIKELEEKEE 338
                          170
                   ....*....|....*
gi 2462587977  740 K--ELQEKRKAARKR 752
Cdd:PRK03918   339 RleELKKKLKELEKR 353
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
1905-2021 2.58e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 41.20  E-value: 2.58e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  1905 KPLLFVGPTGTGKSVYVKdKLMNHLEKDQYFPFYINLSARTSANQVQNIIMARLDKRRKGVFGPPMG---------KKCI 1975
Cdd:smart00382    3 EVILIVGPPGSGKTTLAR-ALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRlalalarklKPDV 81
                            90       100       110       120
                    ....*....|....*....|....*....|....*....|....*.
gi 2462587977  1976 IFIDDMNMPALEKYGAqppieLLRQFFDCGHWYDLKDTSKITLVDI 2021
Cdd:smart00382   82 LILDEITSLLDAEQEA-----LLLLLEELRLLLLLKSEKNLTVILT 122
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
539-751 9.99e-03

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 41.87  E-value: 9.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  539 TVGIEELILRIQESKRQMSYFLDVFLFPQEDLALNATVlmwPRKINPIFDENDELiENAKHKKENELMAK----REKLIL 614
Cdd:COG5185    214 NLGSESTLLEKAKEIINIEEALKGFQDPESELEDLAQT---SDKLEKLVEQNTDL-RLEKLGENAESSKRlnenANNLIK 289
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  615 EIEKESRRMEEFTEFAELERmqqyvtDVRQLQKRIQESEEAVQFINKEEELFKweltkypELDKLKVNIEpyQKFFNFVL 694
Cdd:COG5185    290 QFENTKEKIAEYTKSIDIKK------ATESLEEQLAAAEAEQELEESKRETET-------GIQNLTAEIE--QGQESLTE 354
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462587977  695 KWQRSEKrwmdggflDLNGESMEADVEEFSREIFKTLKFFQTkLKKELQEKRKAARK 751
Cdd:COG5185    355 NLEAIKE--------EIENIVGEVELSKSSEELDSFKDTIES-TKESLDEIPQNQRG 402
 
Name Accession Description Interval E-value
AAA_6 pfam12774
Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic ...
1238-1564 0e+00

Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities: AAA1-AAA6). This is the first site (out of four nucleotide binding sites in the dynein motor) where the movement depends on ATP hydrolysis. When this site is nucleotide free or bound to ADP, the microtubule binding domain (MTBD) binds to the microtubule and the linker adopts the straight post-power-stroke conformation. Upon ATP binding and hydrolysis, the MTBD detaches from the microtubule and the linker is primed into the pre-power-stroke conformation. Dynein's AAA+ domains are each divided into an alpha/beta large subdomain designated with an L and and alpha small subdomains designated with an S. This is the AAA1 large (AAA1L) subdomain with the accompanying small subdomain (AAA1S). AAA1L, AAA1S and AAA2L enclose ADP.vanadate (ADP.Vi, ATP-hydrolysis transition state analogue). The AAA1L sensor-I loop, which varies in position depending on dynein's nucleotide state, swings in to contact AAA2L forming the important AAA1 nucleotide-binding site.


Pssm-ID: 463697 [Multi-domain]  Cd Length: 327  Bit Score: 651.47  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1238 YAYEYLGNSPRLVITPLTDRCYRTLIGAFYLNLGGAPEGPAGTGKTETTKDLAKALAVQCVVFNCSDGLDYLAMGKFFKG 1317
Cdd:pfam12774    1 YGYEYLGNSGRLVITPLTDRCYLTLTQALHLHLGGAPAGPAGTGKTETVKDLAKALAKQVVVFNCSDGLDYKSMGRIFKG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1318 LASSGAWACFDEFNRIELEVLSVVAQQILCIQRAIQQKLVVFVFEGTELKLNPNCFVAITMNPGYAGRSELPDNLKVLFR 1397
Cdd:pfam12774   81 LAQCGAWGCFDEFNRIDIEVLSVVAQQILTIQQALAANLKTFVFEGSEIKLNPSCGIFITMNPGYAGRTELPDNLKALFR 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1398 TVAMMVPNYALIAEISLYSYGFLNARPLSVKIVMTYRLCSEQLSSQFHYDYGMRAVKAVLVAAGNLKLKYPNENEDILLL 1477
Cdd:pfam12774  161 PVAMMVPDYALIAEIMLFSEGFSDAKVLAKKLVTLYKLCSEQLSKQDHYDFGLRALKSVLVTAGSLKRSNPNLNEDVLLL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1478 RSIKDVNEPKFLSHDIPLFNGITSDLFPGIKLPEADYHEFLECAHEACNVHNLQPVKFFLEKIIQTYEMMIVRHGFMLVG 1557
Cdd:pfam12774  241 RALRDMNLPKLVADDVPLFLGLISDLFPGVELPPSDYGELEEAIEEVCKELGLQPHDAFILKVIQLYETMLVRHGVMLVG 320

                   ....*..
gi 2462587977 1558 EPFAAKT 1564
Cdd:pfam12774  321 PTGSGKT 327
DHC_N2 pfam08393
Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic ...
676-1110 2.27e-155

Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. This region is found C-terminal to the dynein heavy chain N-terminal region 1 (pfam08385) in many members of this family. No functions seem to have been attributed specifically to this region.


Pssm-ID: 462462 [Multi-domain]  Cd Length: 402  Bit Score: 488.31  E-value: 2.27e-155
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  676 LDKLKVNIEPYQKFFNFVLKWQRSEKRWMDGGFLDLNGESMEADVEEFSREIfktlkffqTKLKKELQEKRkaarkrsle 755
Cdd:pfam08393    1 LEEIKKELEPLKKLWDLVSEWQESLEEWKNGPFSDLDVEELEEELEEFLKEL--------KKLPKELRDWD--------- 63
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  756 eekieeepkdnatitMCSTVMEQIKAFKEYIPTVSILCNPGMRARHWKQISEIVGYDLTPDS-GTTLRKVLKLNLTPYLE 834
Cdd:pfam08393   64 ---------------VAEELKKKIDDFKKSLPLIEDLRNPALRERHWKQLSEILGFDFDPLSeFFTLGDLLDLNLHKYEE 128
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  835 QFEVISAGASKEFSLEKAMNTMIGTWEDIAFHISLYRDTGVCILSSVDEIQAILDDQIIKTQTMRGSPFIKPFEHEIKAW 914
Cdd:pfam08393  129 EIEEISEQASKEYSIEKALKKIEEEWKTMEFELVPYKDTGTFILKGWDEIQELLDDHLVKLQSMKSSPYVKPFEEEVSEW 208
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  915 EDRLIRIQETIDEWLKVQAQWLYLEPIFCSEDIMQQMPEEGRQFQTVDRHWRDIMKFCAKDPKVLAATSLTGLLEKLQNC 994
Cdd:pfam08393  209 EKKLSLLQEILDEWLKVQRKWLYLEPIFSSEDIRKQLPEEAKRFQNVDKEWKKIMKKAVKDPNVLEACNIPGLLEKLEEL 288
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  995 NELLEKIMKGLNAYLEKKRLFFPRFFFLSNDEMLEILSETKDPLRVQPHLKKCFEGIAKLEFLPNLDIKAMYSSEGERVE 1074
Cdd:pfam08393  289 NELLEKIQKSLNEYLEKKRLAFPRFYFLSNDELLEILSQTKDPTRVQPHLKKCFEGIASLEFDENKEITGMISKEGEVVP 368
                          410       420       430
                   ....*....|....*....|....*....|....*.
gi 2462587977 1075 LIAliSTSAARGAVEKWLIQVEDLMLRSVHDVIAAA 1110
Cdd:pfam08393  369 FSK--PPVEAKGNVEEWLNELEEEMRETLRDLLKEA 402
Dynein_C pfam18199
Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein ...
3634-3935 2.56e-146

Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading over the AAA1, AAA5 and AAA6 domain.


Pssm-ID: 465677  Cd Length: 301  Bit Score: 457.85  E-value: 2.56e-146
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3634 LQQTKTLFESLLLTQ--GGSKQTGASGSTDQILLEITKDILNKLPSDFDIEMALRKYPVRYEESMNTVLVQEMERFNNLI 3711
Cdd:pfam18199    1 TNETNELLSTLLSLQprSDSGGGGGGSSREEIVLELAKDILEKLPEPFDIEEAEEKYPVGYEDPLNTVLLQEIERFNKLL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3712 ITIRNTLRDLEKAIKGVVVMDSALEALSSSLLVGKVPEIWAKRSYPSLKPLGSYITDFLARLNFLQDWYN-SGKPCVFWL 3790
Cdd:pfam18199   81 KVIRRSLQDLQKAIKGLVVMSSELEELANSLLNGKVPESWAKKSYPSLKPLGSWIRDLLERLKQLQDWLDdEGPPKVFWL 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3791 SGFFFTQAFLTGAMQNYARKYTTPIDLLGYEFEV---IPSDTSDTSPEDGVYIHGLYLDGARWDRESGLLAEQYPKLLFD 3867
Cdd:pfam18199  161 SGFFFPQAFLTAVLQNYARKNGWPIDKLSFDFEVtkkVSPEEVTEPPEDGVYVHGLFLEGARWDRKNGCLVESEPKELFS 240
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462587977 3868 LMPIIWIKPTQKSRI-IKSDAYVCPLYKTSERkgtlsttgHSTNFVIAMLLKTDQPTRHWIKRGVALLC 3935
Cdd:pfam18199  241 PLPVIHLKPVESDKKkLDENTYECPVYKTSER--------HSTNFVFSVDLPTDKPPDHWILRGVALLL 301
AAA_9 pfam12781
ATP-binding dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. ...
2873-3094 6.14e-129

ATP-binding dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the fifth AAA+ domain subdomain AAA5S. Structural analysis reveal that it is the coiled-coil buttress interface. The relative movement of AAA5S together with the stalk (AAA4S), is coupled to rearrangements in the AAA+ ring. Closure of the AAA1 site and the rigid body movement of AAA2-AAA4 force the AAA4/AAA5 interface to close and the AAA6L subdomain to rotate towards the ring centre. The AAA5S subdomain rotates as a unit together with AAA6L, and this movement pulls the buttress relative to the stalk.


Pssm-ID: 463702 [Multi-domain]  Cd Length: 222  Bit Score: 404.52  E-value: 6.14e-129
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2873 RAWNIAGLPTDTFSIDNGVIVNNCRRWPLMIDPQGQANKWIKNSEKENQLSVIKLSDSDYMRTLENCIQFGTPLLLENVG 2952
Cdd:pfam12781    1 REWNIQGLPNDELSIENAIIVTNSRRWPLLIDPQGQANKWIKNMEKDNGLKVTSFTDKNFLKTLENAIRFGKPLLIEDVG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2953 EELDPSLEPLLLRQTFKQGGIDCIRLGEVIIEYSFDFKFYITTKLRNPHYMPELATKVSLLNFMITPEGLEDQLLGIVVA 3032
Cdd:pfam12781   81 EELDPILDPVLLKEIFKGGGRKVIKLGDKEVDYNPNFRLYLTTKLPNPHYPPEVAAKVTLINFTVTRSGLEDQLLGIVVK 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462587977 3033 KERPELEEERNALILQSAANKKQLKDIEKKILETLSSSEGNILEDESAIKVLDSAKMMSNEI 3094
Cdd:pfam12781  161 KERPDLEEQRNELIKEIAENKKQLKELEDKLLELLSSSEGNILDDEELIETLETSKKTSEEI 222
AAA_8 pfam12780
P-loop containing dynein motor region D4; The 380 kDa motor unit of dynein belongs to the AAA ...
2246-2506 8.68e-127

P-loop containing dynein motor region D4; The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D4 ATP-binding region of the motor.


Pssm-ID: 463701 [Multi-domain]  Cd Length: 259  Bit Score: 400.06  E-value: 8.68e-127
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2246 MNLVIFRYVLEHLSRICRVLKQSGGNALLVGLGGSGRQSLTRLATSMAKMHIFQPEISKSYGMNEWREDMKGLLRNVGMK 2325
Cdd:pfam12780    1 MDLVLFRDALEHLCRICRILRQPRGHALLVGVGGSGRQSLTKLAAFIAGYELFQIEVTRNYDMNEFREDLKKVLKKAGIK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2326 GQKTVFLITDTQIKEEAFLEDIDSVLNTGEVPNIFAADEKQEVMEGVRPVAQAGNKhdELSPLALFAFFVNRCKDNLHVV 2405
Cdd:pfam12780   81 GKPTVFLLSDTQIIEESFLEDINNLLNSGEVPNLFTDEEKEEIIESVRDDAKAQNI--EDSREAVYNYFVKRCRNNLHIV 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2406 VAFSPIGDAFRNRLRQFPSLINCCTIDWFQSWPEDALERVAVKFLETLELTEVEQQEIVPICKHFHTSIMDLSERFLHEL 2485
Cdd:pfam12780  159 LCMSPVGEAFRNRLRMFPSLVNCCTIDWFNEWPEEALLAVAEKFLEDIEIPEELKSNVVKVFVYVHSSVEDMSKKFYEEL 238
                          250       260
                   ....*....|....*....|.
gi 2462587977 2486 GRHNYVTATSYLELIGSFRQL 2506
Cdd:pfam12780  239 KRKNYVTPKSYLELLRLYKNL 259
DYN1 COG5245
Dynein, heavy chain [Cytoskeleton];
891-3584 1.31e-111

Dynein, heavy chain [Cytoskeleton];


Pssm-ID: 227570 [Multi-domain]  Cd Length: 3164  Bit Score: 401.67  E-value: 1.31e-111
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  891 QIIKTQTMRGSPFIKP--FEHEIKAW----------EDRLIRIQETIDEWLKVQA-------QWLYLEPIFCS-EDIMQQ 950
Cdd:COG5245    564 GIVQLSGIRRAKRCVErqIDDEIREWcssvlsddflEERAVRVERGADGARRLRAssgspvlRRLDEYLMMMSlEDLMPL 643
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  951 MPEEGRQFQTVDRHWRDIMKFCakdpkVLAATSLTGLLEKLQNCNELLEKIMKGLNAYLEK--KRLFFPRFFFLSNDEML 1028
Cdd:COG5245    644 IPHAVHRKMSLVSGVRGIYKRV-----VSGCEAINTILEDVGDDLDLFYKEMDQVFMSIEKvlGLRWREVERASEVEELM 718
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1029 EILSETKDPLRVQPHLKKCFEGIAKLEFLPNLdIKAMYSSEGER---VELIALISTSAARGAVEKWLIQVEDLMLRSVHD 1105
Cdd:COG5245    719 DRVRELENRVYSYRFFVKKIAKEEMKTVFSSR-IQKKEPFSLDSeayVGFFRLYEKSIVIRGINRSMGRVLSQYLESVQE 797
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1106 VIAAARLAYpesarrdWVREWPGQVVLCISQMfWTSETQEVISggtEGLKKYYKELQnqlnEIVELVRGKLSKQTRTTLG 1185
Cdd:COG5245    798 ALEIEDGSF-------FVSRHRVRDGGLEKGR-GCDAWENCFD---PPLSEYFRILE----KIFPSEEGYFFDEVLKRLD 862
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1186 ALVTIDVHARDVVmDMIKMGVSHDTDFLWLAQLRYYWENENARVRIINCN--VKYAYEYLGNSPRLVITPLTDRCYRTLI 1263
Cdd:COG5245    863 PGHEIKSRIEEII-RMVTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSyrSAEMFAKNTIPFFVFEHSMDTSQHQKLF 941
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1264 GAFYLNLGGApegpAGTGKTETTKDLAKALAvqcvvfNCSDGLDYLAmgKFFKGLASSGAWAcFDEFNRIELEVLSVVAQ 1343
Cdd:COG5245    942 EAVCDEVCRF----VDTENSRVYGMLVAGKG------RIYDGTEPRS--RIEAGPICEEERG-TEESALLDEISRTILVD 1008
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1344 QILcIQRAIQ--QKLVVFVFEgtELKLNPNCFVAITMNPgyagRSELPDNLKVLFRTVAMMVPnYALIAEISlysygfln 1421
Cdd:COG5245   1009 EYL-NSDEFRmlEELNSAVVE--HGLKSPSTPVEMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSRR-------- 1072
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1422 aRPLSVKIVMTYRLCSEQLSSQFHYDYgmRAVKAVLVAAGNL---KLKYPNENEDILLLRSIKDVnepkflshdiplfng 1498
Cdd:COG5245   1073 -ESLDREIGAFNNEVDGIAREEDELMF--YPMFKSLKAKHRMleeKTEYLNKILSITGLPLISDT--------------- 1134
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1499 itsdLFPGIKLPEADYHEFLECAHEACNVHNLQPVKFFLEKIIQTYEMMIVRHGFMLVGEPFAAKTKVLHVLADtltlmn 1578
Cdd:COG5245   1135 ----LRERIDTLDAEWDSFCRISESLKKYESQQVSGLDVAQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTDACD------ 1204
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1579 ehgYGEEEKVIYRTVNPKSITMgQLFGQFDPVSHEWTDGIVANTfrefalsetpdRKWVVFDGpidtlWIESMNTVLDDN 1658
Cdd:COG5245   1205 ---YLWHVKSPYVKKKYFDADM-ELRQFFLMFNREDMEARLADS-----------KMEYEVER-----YVEKTKAEVSSL 1264
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1659 KKLCLMSGEiiqmspqMSLIFETMDlsqASPATVSRCGMIYLEPSQLGWEPLVSSWLNSLKGPL--CEPEYQALLrglFA 1736
Cdd:COG5245   1265 KLELSSVGE-------GQVVVSNLG---SIGDKVGRCLVEYDSISRLSTKGVFLDELGDTKRYLdeCLDFFSCFE---EV 1331
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1737 WLIPPSLNQrkKKCKELIPTSNSNVVVSLTRLFEVLLCNVveNDPTS--------------KHIRVWIMACFIFSLIWSI 1802
Cdd:COG5245   1332 QKEIDELSM--VFCADALRFSADLYHIVKERRFSGVLAGS--DASESlggksielaailehKDLIVEMKRGINDVLKLRI 1407
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1803 GGSCDTDGRRVFdTFIRLIILGKDDEnpvpdsvgkwECPFDEKGLVYDYMYELKNKgrwvHWNELIKNTNLGDKQIKIQD 1882
Cdd:COG5245   1408 FGDKCRESTPRF-YLISDGDLIKDLN----------ERSDYEEMLIMMFNISAVIT----NNGSIAGFELRGERVMLRKE 1472
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1883 IIVPTMDTIRYTFLMDLSITYAKPLLFVGPTGTGKSVYVKDKLMNHLEKDQyfpFYINLSARTSANQVQNIIMARLDKRR 1962
Cdd:COG5245   1473 VVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEV---KYFNFSTCTMTPSKLSVLERETEYYP 1549
                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1963 KG----VFGPPMGKKCIIFIDDMNMPALEKYGAQPPIELLRQFFD-CGHWYDLkDTSKITLVDIELIAAMGPPGG-GRNP 2036
Cdd:COG5245   1550 NTgvvrLYPKPVVKDLVLFCDEINLPYGFEYYPPTVIVFLRPLVErQGFWSSI-AVSWVTICGIILYGACNPGTDeGRVK 1628
                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2037 VTPRCIRHFNICSINSFSDETMVRIFSsivAFYLRTHEFPPEYFVIGNQIVNGTMEIYKQSVENLlPTPTKSHYTFNLRD 2116
Cdd:COG5245   1629 YYERFIRKPVFVFCCYPELASLRNIYE---AVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKT-KFFLQMNYGYKPRE 1704
                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2117 FSRVIRGCL-LIERDAVANKHTMIRLFVHEVLRVFYDRLINDDDRRWLFQ-LTKTVIKDhfkesfhsifshLRKQNAPVT 2194
Cdd:COG5245   1705 LTRSLRAIFgYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQdLYDFGLRA------------IREMIAGHI 1772
                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2195 EEdlRNLMFGDYMNPDLE----GDDRVYIEipniHHFSDVVDQCLDeynqthktrMNLVIFRYVLEHLSRICRVLKQSGG 2270
Cdd:COG5245   1773 GE--AEITFSMILFFGMAcllkKDLAVFVE----EVRKIFGSSHLD---------VEAVAYKDALLHILRSRRGLLVVGG 1837
                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2271 NALLVGLGGSGRQSLTRLATSMAKMHIFQPEISKSYGMNEWREDMKGLLRNVGMKGQKTVFLITDTQIKEEAFLEDIDSV 2350
Cdd:COG5245   1838 HGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRDELTGDFRDSLKVQDLRRNIHGGRECLFIFESIPVESSFLEDFNPL 1917
                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2351 LNTGEVPNIFAADEKQEVMEGVRPVAQA-GNKHDelSPLALFAFFVNRCKDNLHVVV-AFSPIGDAFRNRLRqFPSLINC 2428
Cdd:COG5245   1918 LDNNRFLCLFSGNERIRIPENLRFVFEStSLEKD--TEATLTRVFLVYMEENLPVVFsACCSQDTSVLAGIR-SPALKNR 1994
                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2429 CTIDWFQSWPEDALERVA-------------------VKFLETLELTEVEQQEIVPIckhfHTSIMdlsERFLHElgRHN 2489
Cdd:COG5245   1995 CFIDFKKLWDTEEMSQYAnsvetlsrdggrvffingeLGVGKGALISEVFGDDAVVI----EGRGF---EISMIE--GSL 2065
                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2490 YVTATSYLELIGSFRQLLTQKRQAVMEAKQRYMNGLDKLAFAESQVGEMQMELVELQPKLEEAKIENANMMQVIEIESVQ 2569
Cdd:COG5245   2066 GESKIKFIGGLKVYDARCVIYIEELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKNADDALSGTPGERLE 2145
                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2570 VEAKRQFVKLDEEIASGKAEEAQALKNECESDLAEAIPALEAALSALDTLKPADITIVKSMKNPPSGVKLVMAAVCvmkd 2649
Cdd:COG5245   2146 REVKSVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVC---- 2221
                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2650 ikpekisdpsgtggKILDY----WGPSKKLLGDMNFLRDLKEYD--KDNIPVAKASSAAEGLCKWIMAMEVYDRVAKVVA 2723
Cdd:COG5245   2222 --------------DLLGFeakiWFGEQQSLRRDDFIRIIGKYPdeIEFDLEARRFREARECSDPSFTGSILNRASKACG 2287
                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2724 PKKARL-SEAQKSLA-ETMELLNQ--KRAELaEVEHHLENLQ---------MTFLEKTEEKAAL--------EDQVELCA 2782
Cdd:COG5245   2288 PLKRWLvRECNRSKVlEVKIPLREeeKRIDG-EAFLVEDRLTlgkglssdlMTFKLRRRSYYSLdilrvhgkIADMDTVH 2366
                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2783 KKLERASQLIGGLGGEKSRWAQAADDLQITYENLTGDVLVSAGVIAYLGafTSGFRqtCTKDWSMLCKKkkipcseefLL 2862
Cdd:COG5245   2367 KDVLRSIFVSEILINEDSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIG--TLGFL--CRAIEFGMSFI---------RI 2433
                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2863 SKTLGDPVKIRAWNIAGL------------PTDTFSIDNGVIVNNCRRWPLMIDPQGQANKWIKNSEKENQLSVIKLSDS 2930
Cdd:COG5245   2434 SKEFRDKEIRRRQFITEGvqkiedfkeeacSTDYGLENSRIRKDLQDLTAVLNDPSSKIVTSQRQMYDEKKAILGSFREM 2513
                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2931 DYMRTLENCIQFGTPLLLEnVGEELDPSLEPLLLRQTFKQGGIDCIRLGEVIIEYSFDFKFYITTKLRNPHYMPELATKV 3010
Cdd:COG5245   2514 EFAFGLSQARREGSDKIIG-DAEALDEEIGRLIKEEFKSNLSEVKVMINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQL 2592
                         2250      2260      2270      2280      2290      2300      2310      2320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3011 SLLNFMITPEGLEDQLLGIVVAKERPELEEERNALILQSAANKKQLKDIEKKILETLSSSEGNILEDESAIKVLDSAKMM 3090
Cdd:COG5245   2593 IQVMFVSKVLGCETEIPDALEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKS 2672
                         2330      2340      2350      2360      2370      2380      2390      2400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3091 SNEITKKQQIAEKTELKIAESREGYRPIAKHSSVLFFSIADLAnidpmyqySLTWFVNLYINSIHDSNKsKILEKRLRYL 3170
Cdd:COG5245   2673 RKEIEEEESESMEIEDRIDALKSEYNASVKRLESIRVEIAMFD--------EKALMYNKSICELSSEFE-KWRRMKSKYL 2743
                         2410      2420      2430      2440      2450      2460      2470      2480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3171 NDHFTYNLYCNICrsLFEKDKLLFSFLLCANLLLARKeieyqELMFLLtggvslksaeknpdptwLQDKSWEEICRASEF 3250
Cdd:COG5245   2744 CAIRYMLMSSEWI--LDHEDRSGFIHRLDVSFLLRTK-----RFVSTL-----------------LEDKNYRQVLSSCSL 2799
                         2490      2500      2510      2520      2530      2540      2550      2560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3251 PAFrGLRQHFCEHIYewREIYDSKephnakfpapmdKNLNELQKIIILRcLRPDKITPAITNYVTDKLGKKFVEPPP--- 3327
Cdd:COG5245   2800 YGN-DVISHSCDRFD--RDVYRAL------------KHQMDNRTHSTIL-TSNSKTNPYKEYTYNDSWAEAFEVEDSgdl 2863
                         2570      2580      2590      2600      2610      2620      2630      2640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3328 FDLTKSYLD-SNCTIPLIFVLspgadpMASLlkfandksmsgnkfQAISLGQGQGPI-----AAKMIKAAIEEGTWVCLQ 3401
Cdd:COG5245   2864 YKFEEGLLElIVGHAPLIYAH------KKSL--------------ENERNVDRLGSKenevyAVLNSLFSRKEKSWFEVY 2923
                         2650      2660      2670      2680      2690      2700      2710      2720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3402 NCHLAVSWMPML--EKICEDFTSETCNSSFRLWLTSYPSSKFPVTILQNGVKMTNEPPTGLRLNLLQSYLTDP-VSDPEF 3478
Cdd:COG5245   2924 NISLSFGWFKRYveDVVYPIKASRVCGKVKNMWTSMVDADMLPIQLLIAIDSFVSSTYPETGCGYADLVEIDRyPFDYTL 3003
                         2730      2740      2750      2760      2770      2780      2790      2800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3479 FKGCRgkelawekLLFGVCFFHALVQERKKFGPLGWNIPYGFNESDLRISIRQLQ--LFINEYDTIPFEAISYLTGECNY 3556
Cdd:COG5245   3004 VIACD--------DAFYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKniLFLNHLNARKWGNNRDLIFTIVY 3075
                         2810      2820      2830
                   ....*....|....*....|....*....|..
gi 2462587977 3557 GGRVTDDWDRRLLLTML----ADFYNLYIVEN 3584
Cdd:COG5245   3076 GKKHSLMEDSKVVDKYCrgygAHETSSQILAS 3107
AAA_7 pfam12775
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 ...
1875-2053 2.85e-106

P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs).


Pssm-ID: 463698 [Multi-domain]  Cd Length: 179  Bit Score: 337.44  E-value: 2.85e-106
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1875 DKQIKIQDIIVPTMDTIRYTFLMDLSITYAKPLLFVGPTGTGKSVYVKDkLMNHLEKDQYFPFYINLSARTSANQVQNII 1954
Cdd:pfam12775    2 PPDVPFSEILVPTVDTVRYTYLLDLLLKNGKPVLLVGPTGTGKTVIIQN-LLRKLDKEKYLPLFINFSAQTTSNQTQDII 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1955 MARLDKRRKGVFGPPMGKKCIIFIDDMNMPALEKYGAQPPIELLRQFFDCGHWYDLKDTSKITLVDIELIAAMGPPGGGR 2034
Cdd:pfam12775   81 ESKLEKRRKGVYGPPGGKKLVVFIDDLNMPAVDTYGAQPPIELLRQWLDYGGWYDRKKLTFKEIVDVQFVAAMGPPGGGR 160
                          170
                   ....*....|....*....
gi 2462587977 2035 NPVTPRCIRHFNICSINSF 2053
Cdd:pfam12775  161 NDITPRLLRHFNVFNITFP 179
AAA_lid_11 pfam18198
Dynein heavy chain AAA lid domain; This family represents the AAA lid domain found neat the ...
3489-3628 1.80e-81

Dynein heavy chain AAA lid domain; This family represents the AAA lid domain found neat the C-terminal region of dynein heavy chain.


Pssm-ID: 465676  Cd Length: 139  Bit Score: 264.70  E-value: 1.80e-81
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3489 WEKLLFGVCFFHALVQERKKFGPLGWNIPYGFNESDLRISIRQLQLFINEY-DTIPFEAISYLTGECNYGGRVTDDWDRR 3567
Cdd:pfam18198    1 WKKLLFGLCFFHAVVQERRKFGPLGWNIPYEFNESDLRISVQQLQMYLDEYdEKIPWDALRYLIGEINYGGRVTDDWDRR 80
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462587977 3568 LLLTMLADFYNLYIVEnPHYKFSPSgNYFAPPKGTYEDYIEFIKKLPFTQHPEIFGLHENV 3628
Cdd:pfam18198   81 LLNTYLEEFFNPEVLE-EDFKFSPS-LYYIPPDGDLEDYLEYIESLPLVDSPEVFGLHPNA 139
Dynein_heavy pfam03028
Dynein heavy chain region D6 P-loop domain; This family represents the C-terminal region of ...
3338-3453 2.76e-67

Dynein heavy chain region D6 P-loop domain; This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained.


Pssm-ID: 460782  Cd Length: 115  Bit Score: 223.09  E-value: 2.76e-67
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 3338 NCTIPLIFVLSPGADPMASLLKFANDKSMsGNKFQAISLGQGQGPIAAKMIKAAIEEGTWVCLQNCHLAVSWMPMLEKIC 3417
Cdd:pfam03028    1 SPTTPLIFILSPGSDPTADLEKLAKKLGF-GGKLHSISLGQGQGPIAEKLIEEAAKEGGWVLLQNCHLALSWMPELEKIL 79
                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 2462587977 3418 EDFTSETCNSSFRLWLTSYPSSKFPVTILQNGVKMT 3453
Cdd:pfam03028   80 EELPEETLHPDFRLWLTSEPSPKFPISILQNSIKIT 115
MT pfam12777
Microtubule-binding stalk of dynein motor; the 380 kDa motor unit of dynein belongs to the AAA ...
2519-2840 8.58e-50

Microtubule-binding stalk of dynein motor; the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This family is the region between D4 and D5 and is the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component.


Pssm-ID: 463699 [Multi-domain]  Cd Length: 344  Bit Score: 182.20  E-value: 8.58e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2519 QRYMNGLDKLAFAESQVGEMQMEL----VELQPKLEEAKienaNMMQVIEIESVQVEAKRQFVKLDEEIASGKAEEAQAL 2594
Cdd:pfam12777    1 ERLENGLLKLHSTAAQVDDLKAKLaaqeAELKQKNEDAD----KLIQVVGIEADKVSKEKAIADEEEQKVAVIMKEVKEK 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2595 KNECESDLAEAIPALEAALSALDTLKPADITIVKSMKNPPSGVKLVMAAVCVMkdikpekisdpSGTGGKILD--YWGPS 2672
Cdd:pfam12777   77 QKACEEDLAKAEPALLAAQAALDTLNKNNLTELKSFGSPPDAVSNVSAAVMIL-----------MAPGGKIPKdkSWKAA 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2673 KKLLGDMN-FLRDLKEYDKDNIP--------------------VAKASSAAEGLCKWIMAMEVYDRVAKVVAPKKARLSE 2731
Cdd:pfam12777  146 KIMMAKVDgFLDSLIKFDKEHIHeaclkafkpylgdpefdpefIASKSTAAAGLCSWCINIVRFYEVFCDVAPKRQALEE 225
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2732 AQKSLAETMELLNQKRAELAEVEHHLENLQMTFLEKTEEKAALEDQVELCAKKLERASQLIGGLGGEKSRWAQAADDLQI 2811
Cdd:pfam12777  226 ANADLAAAQEKLAAIKAKIAELNANLAKLTAAFEKATADKIKCQQEADATARTILLANRLVGGLASENIRWADAVENFKQ 305
                          330       340
                   ....*....|....*....|....*....
gi 2462587977 2812 TYENLTGDVLVSAGVIAYLGAFTSGFRQT 2840
Cdd:pfam12777  306 QERTLCGDILLISAFISYLGFFTKKYRNE 334
Dynein_AAA_lid pfam17852
Dynein heavy chain AAA lid domain; This entry corresponds to the extension domain of AAA ...
1731-1866 5.66e-38

Dynein heavy chain AAA lid domain; This entry corresponds to the extension domain of AAA domain 5 in the dynein heavy chain. This domain is composed of 8 alpha helices.


Pssm-ID: 465532 [Multi-domain]  Cd Length: 126  Bit Score: 139.72  E-value: 5.66e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1731 LRGLFAWLIPPSLNQRKKKCKELIPTSNSNVVVSLTRLFEVLLCNVVENDP----TSKHIRVWIMACFIFSLIWSIGGSC 1806
Cdd:pfam17852    1 LEPLFEWLVPPALEFVRKNCKEIVPTSDLNLVQSLCRLLESLLDEVLEYNGvhplSPDKLKEYLEKLFLFALVWSIGGTL 80
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1807 DTDGRRVFDTFIRLIILGKDdenpvpdsvgkweCPFDEKGLVYDYMYELKnKGRWVHWNE 1866
Cdd:pfam17852   81 DEDSRKKFDEFLRELFSGLD-------------LPPPEKGTVYDYFVDLE-KGEWVPWSD 126
AAA_lid_1 pfam17857
AAA+ lid domain; This domain represents the AAA lid domain from dynein heavy chain D3.
2086-2177 2.05e-11

AAA+ lid domain; This domain represents the AAA lid domain from dynein heavy chain D3.


Pssm-ID: 465535 [Multi-domain]  Cd Length: 100  Bit Score: 63.03  E-value: 2.05e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2086 IVNGTMEIYKQSVENLLPTPTKSHYTFNLRDFSRVIRGCLLIERDAVANKHTMIRLFVHEVLRVFYDRLINDDDRRWLFQ 2165
Cdd:pfam17857    1 LIAAALAFHQKIAATFLPTAIKFHYIFNLRDFANIFQGILFSSAECLKSPLDLIRLWLHESERVYGDKMVDEKDFDLFDK 80
                           90
                   ....*....|..
gi 2462587977 2166 LTKTVIKDHFKE 2177
Cdd:pfam17857   81 IQMASLKKFFDD 92
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
1906-2045 7.42e-11

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 62.70  E-value: 7.42e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1906 PLLFVGPTGTGKSvYVKDKLMNHLEKDQYFpfYINLSARTSANQVQNI--IMARLDKRRKGVFGPPMGKKCIIFIDDMNM 1983
Cdd:pfam07728    1 GVLLVGPPGTGKT-ELAERLAAALSNRPVF--YVQLTRDTTEEDLFGRrnIDPGGASWVDGPLVRAAREGEIAVLDEINR 77
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462587977 1984 PALEKYGAQ-PPIELLRQFFDCGHWYDLKDTSKITlvdieLIAAMGPPGGGRNPVTPRCIRHF 2045
Cdd:pfam07728   78 ANPDVLNSLlSLLDERRLLLPDGGELVKAAPDGFR-----LIATMNPLDRGLNELSPALRSRF 135
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
1886-2047 2.89e-07

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 52.92  E-value: 2.89e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1886 PTMDTIRYTFLMDLSITYAKPLLFVGPTGTGKSVYVKdKLMNHLEKDQYFPFYINLSARTSANQVQNIIMARLDKRRKGV 1965
Cdd:cd00009      1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLAR-AIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1966 FgpPMGKKCIIFIDDMN-MPALEKYGAQppiELLRQFFDcghwyDLKDTSKITLVdieLIAAMGPPGGGRNPVTPRCIRH 2044
Cdd:cd00009     80 A--EKAKPGVLFIDEIDsLSRGAQNALL---RVLETLND-----LRIDRENVRVI---GATNRPLLGDLDRALYDRLDIR 146

                   ...
gi 2462587977 2045 FNI 2047
Cdd:cd00009    147 IVI 149
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
1552-1695 3.50e-07

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 51.91  E-value: 3.50e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1552 GFMLVGEPFAAKTKVLHVLADTLTlmnehgygeeEKVIYRTVNPKSITMGQLFGQ--FDPVSHEWTDGIVANTFREfals 1629
Cdd:pfam07728    1 GVLLVGPPGTGKTELAERLAAALS----------NRPVFYVQLTRDTTEEDLFGRrnIDPGGASWVDGPLVRAARE---- 66
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462587977 1630 etpdrKWVVFDGPIDTL---WIESMNTVLDDNKKLCLMSGEIIQMSP-QMSLIFETMDLSQ----ASPATVSRC 1695
Cdd:pfam07728   67 -----GEIAVLDEINRAnpdVLNSLLSLLDERRLLLPDGGELVKAAPdGFRLIATMNPLDRglneLSPALRSRF 135
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
2490-2620 2.37e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.83  E-value: 2.37e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 2490 YVTATSYLELIGSFRQLLTQKRQAV--MEAKQRYMNGLD-KLAFAESQVGEMQMELVELQPKLEEAKIENANMMQVIEIE 2566
Cdd:TIGR02168  228 ALLVLRLEELREELEELQEELKEAEeeLEELTAELQELEeKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL 307
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462587977 2567 SVQVE-AKRQFVKLDEEIASG--KAEEAQALKNECESDLAEAIPALEAALSALDTLK 2620
Cdd:TIGR02168  308 RERLAnLERQLEELEAQLEELesKLDELAEELAELEEKLEELKEELESLEAELEELE 364
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
1276-1396 1.12e-04

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 44.98  E-value: 1.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977 1276 GPAGTGKTETTKDLAKALaVQCVVF--NCSD---------GLDYLAMGKFFKGL-----ASSGAWACFDEFNRIELEVLS 1339
Cdd:pfam07728    6 GPPGTGKTELAERLAAAL-SNRPVFyvQLTRdtteedlfgRRNIDPGGASWVDGplvraAREGEIAVLDEINRANPDVLN 84
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2462587977 1340 VVaqqilciQRAIQQKLVVFVFEGTELKLNPNCFVAI-TMNPGYAGRSELPDNLKVLF 1396
Cdd:pfam07728   85 SL-------LSLLDERRLLLPDGGELVKAAPDGFRLIaTMNPLDRGLNELSPALRSRF 135
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
591-752 5.72e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 46.21  E-value: 5.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  591 DELIENAKHKKE------NELMAKREKLILEIEKESRRMEE----FTEFAELERMQQYVT-DVRQLQKRIQESEEAVQFI 659
Cdd:PRK03918   192 EELIKEKEKELEevlreiNEISSELPELREELEKLEKEVKEleelKEEIEELEKELESLEgSKRKLEEKIRELEERIEEL 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  660 NKEEELFKwelTKYPELDKLKVNIEPYQKFFNFVLKWqRSEKRwmdggfldlNGESMEADVEEFSREIFKTLKFFQTKLK 739
Cdd:PRK03918   272 KKEIEELE---EKVKELKELKEKAEEYIKLSEFYEEY-LDELR---------EIEKRLSRLEEEINGIEERIKELEEKEE 338
                          170
                   ....*....|....*
gi 2462587977  740 K--ELQEKRKAARKR 752
Cdd:PRK03918   339 RleELKKKLKELEKR 353
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
1905-2021 2.58e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 41.20  E-value: 2.58e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  1905 KPLLFVGPTGTGKSVYVKdKLMNHLEKDQYFPFYINLSARTSANQVQNIIMARLDKRRKGVFGPPMG---------KKCI 1975
Cdd:smart00382    3 EVILIVGPPGSGKTTLAR-ALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRlalalarklKPDV 81
                            90       100       110       120
                    ....*....|....*....|....*....|....*....|....*.
gi 2462587977  1976 IFIDDMNMPALEKYGAqppieLLRQFFDCGHWYDLKDTSKITLVDI 2021
Cdd:smart00382   82 LILDEITSLLDAEQEA-----LLLLLEELRLLLLLKSEKNLTVILT 122
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
539-751 9.99e-03

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 41.87  E-value: 9.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  539 TVGIEELILRIQESKRQMSYFLDVFLFPQEDLALNATVlmwPRKINPIFDENDELiENAKHKKENELMAK----REKLIL 614
Cdd:COG5185    214 NLGSESTLLEKAKEIINIEEALKGFQDPESELEDLAQT---SDKLEKLVEQNTDL-RLEKLGENAESSKRlnenANNLIK 289
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462587977  615 EIEKESRRMEEFTEFAELERmqqyvtDVRQLQKRIQESEEAVQFINKEEELFKweltkypELDKLKVNIEpyQKFFNFVL 694
Cdd:COG5185    290 QFENTKEKIAEYTKSIDIKK------ATESLEEQLAAAEAEQELEESKRETET-------GIQNLTAEIE--QGQESLTE 354
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462587977  695 KWQRSEKrwmdggflDLNGESMEADVEEFSREIFKTLKFFQTkLKKELQEKRKAARK 751
Cdd:COG5185    355 NLEAIKE--------EIENIVGEVELSKSSEELDSFKDTIES-TKESLDEIPQNQRG 402
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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