|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
300-869 |
3.32e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.33 E-value: 3.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 300 EEQDKVLHCQFSDNSDDEESEGQEKSGTRCRSRSWIQKPDSVCSLVELSDTQDETQKSDLENEDLKIDCLQESQELNLQK 379
Cdd:PTZ00121 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 380 LKNSERILTEAKQKMREltinIKMKEDLIKELIKTGNDAKSVSKqyslkvtklehdAEQAKVELIETQKQLQELENKD-L 458
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEE----KKKADEAKKKAEEDKKKADELKK------------AAAAKKKADEAKKKAEEKKKADeA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 459 SDVAMKVKLQKEFRKKMDAAKlRVQVLQKKQQDSKKLASLSIQNE--KRANELEQSVDHMKyQKIQLQRKLREENEKRKQ 536
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAK-KAEEAKKKAEEAKKADEAKKKAEeaKKADEAKKKAEEAK-KKADEAKKAAEAKKKADE 1514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 537 LdaviKRDQQKIKEIQLKTGQEeglKPKAEDLDACNLKRRKgsfgsiDHLQKLDEQKKwlDEEVEKVLNQRQELEELEAD 616
Cdd:PTZ00121 1515 A----KKAEEAKKADEAKKAEE---AKKADEAKKAEEKKKA------DELKKAEELKK--AEEKKKAEEAKKAEEDKNMA 1579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 617 LKKREAIVSKKEALLQE--KSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTKiseqVEVLQKE 694
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEvmKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK----AEELKKA 1655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 695 KDQLQKRRHNVDEKLKngrvlspeeehvlfqlEEGIEALEAAIEYRNESIQNRQKSLRASfhnlsrgEANVLEKLACLSP 774
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAE----------------EDKKKAEEAKKAEEDEKKAAEALKKEAE-------EAKKAEELKKKEA 1712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 775 VEIRtilfryfnKVVNLREAERKQQLYNEEMKMKVLERDNMVREL------ESALDHLKLQCDRRLTLQQKEHEQKMQll 848
Cdd:PTZ00121 1713 EEKK--------KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAkkdeeeKKKIAHLKKEEEKKAEEIRKEKEAVIE-- 1782
|
570 580
....*....|....*....|.
gi 2462625326 849 lHHFKEQDGEGIMETFKTYED 869
Cdd:PTZ00121 1783 -EELDEEDEKRRMEVDKKIKD 1802
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
431-767 |
9.54e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 9.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 431 KLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELE 510
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 511 QSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIqlktgqEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLD 590
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL------REALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 591 EQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKN 670
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 671 VQLQtSTAEEKTKISEQVEVLQKEKDQLQKRRHN-------VDEKLKNGRVLSPEE-EHVLFQLEEGIEAL----EAAI- 737
Cdd:TIGR02168 915 RELE-ELREKLAQLELRLEGLEVRIDNLQERLSEeysltleEAEALENKIEDDEEEaRRRLKRLENKIKELgpvnLAAIe 993
|
330 340 350
....*....|....*....|....*....|
gi 2462625326 738 EYrnESIQNRQKSLRASFHNLSRGEANVLE 767
Cdd:TIGR02168 994 EY--EELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
389-954 |
1.08e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.40 E-value: 1.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 389 EAK--QKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKdlsdvAMKVK 466
Cdd:PTZ00121 1241 EAKkaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK-----AEEAK 1315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 467 LQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLS-IQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQ 545
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAkAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 546 QKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVS 625
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 626 KKEALLQEKSHlENKKLRSSQALNTDSLKISTRLNLLEQEL---SEKNVQLQTSTAEEKTKISEQVEVLQKEK-DQLQK- 700
Cdd:PTZ00121 1476 KKKAEEAKKAD-EAKKKAEEAKKKADEAKKAAEAKKKADEAkkaEEAKKADEAKKAEEAKKADEAKKAEEKKKaDELKKa 1554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 701 ---RRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIE----YRNESIQNRQKSLRASFHNLSRGEANVLEKLACLS 773
Cdd:PTZ00121 1555 eelKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEevmkLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 774 PVEIRTILFRYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRELESALDHLKLQCDRrltLQQKEHEQKMQLLLHHFK 853
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA---LKKEAEEAKKAEELKKKE 1711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 854 EQDGEGIMETFKTYEDKIQQLEKdlyfYKKTSRDHKKKLKEL-VGEAIRRQLA-PSEYQEAGDGVLKPEGGGMLSEELKW 931
Cdd:PTZ00121 1712 AEEKKKAEELKKAEEENKIKAEE----AKKEAEEDKKKAEEAkKDEEEKKKIAhLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
570 580
....*....|....*....|...
gi 2462625326 932 ASRPESMKLSGREREMDSSASSL 954
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIFDNFANI 1810
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
346-761 |
5.05e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 5.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 346 ELSDTQDETQKSDLEN---EDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELtiniKMKEDLIK--ELIKTGNDAKS 420
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKkkaDEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA----KKAEEAKKkaEEAKKADEAKK 1477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 421 VSKQySLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAK---LRVQVLQKKQQDSKKLAS 497
Cdd:PTZ00121 1478 KAEE-AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKadeAKKAEEKKKADELKKAEE 1556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 498 LSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEglKPKAEDLDACNLKRRK 577
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA--KIKAEELKKAEEEKKK 1634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 578 gsfgsIDHLQKLDEQKKWLDEEVEKvlnqRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKIST 657
Cdd:PTZ00121 1635 -----VEQLKKKEAEEKKKAEELKK----AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 658 RLNLLEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAI 737
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
410 420
....*....|....*....|....*...
gi 2462625326 738 ----EYRNESIQNRQKSLRASFHNLSRG 761
Cdd:PTZ00121 1786 deedEKRRMEVDKKIKDIFDNFANIIEG 1813
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
389-760 |
4.38e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 4.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 389 EAKQKMRELTINIKMKEDLIKELIKtgndaksvskqyslKVTKLEHDAEQAKvELIETQKQLQELEnKDLSdvamkVKLQ 468
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELER--------------QLKSLERQAEKAE-RYKELKAELRELE-LALL-----VLRL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 469 KEFRKKMDAAKLRVQVLQKKQQDSkklaslsiqnEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKI 548
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEEL----------TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 549 KEIQLKTGQ-EEGLKPKAEDLDacNLKRRKgsfgsIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKK 627
Cdd:TIGR02168 305 QILRERLANlERQLEELEAQLE--ELESKL-----DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 628 EALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQEL----SEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRH 703
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRerlqQEIEELLKKLEEAELKELQAELEELEEELEELQEELE 457
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 704 NVDEKLKNGRVLSPEEEHVLFQLEEGIEALEA---AIEYRNESIQNRQKSLRASFHNLSR 760
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQArldSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
431-753 |
2.31e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 431 KLEHdAEQ--AKVELIETQ--KQLQELENKdlSDVAMKVK-LQKEFR-KKMDAAKLRVQVLQKKQQD-SKKLASLSIQNE 503
Cdd:COG1196 180 KLEA-TEEnlERLEDILGEleRQLEPLERQ--AEKAERYReLKEELKeLEAELLLLKLRELEAELEElEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 504 KRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDacnlkrrkgsfgsi 583
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE-------------- 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 584 dhlQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLE 663
Cdd:COG1196 323 ---EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 664 QELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNES 743
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330
....*....|
gi 2462625326 744 IQNRQKSLRA 753
Cdd:COG1196 480 AELLEELAEA 489
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
379-895 |
6.97e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 6.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 379 KLKNSERILTEAKQKMRELTINIKMKE---DLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELEn 455
Cdd:PRK03918 194 LIKEKEKELEEVLREINEISSELPELReelEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELK- 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 456 KDLSDVAMKVKLQKEFRKKMDA----AKLRVQVLQKKQQDSKKLASLsiqnEKRANELEQSVDHMKYQKIQLQRKLREEN 531
Cdd:PRK03918 273 KEIEELEEKVKELKELKEKAEEyiklSEFYEEYLDELREIEKRLSRL----EEEINGIEERIKELEEKEERLEELKKKLK 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 532 EKRKQLdAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRkgsfgsidhLQKLDEQKKWLDEEVEKVLNQRQELE 611
Cdd:PRK03918 349 ELEKRL-EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE---------LEELEKAKEEIEEEISKITARIGELK 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 612 ELEADLK---------KREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELseKNVQLQTSTAEEKT 682
Cdd:PRK03918 419 KEIKELKkaieelkkaKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKEL--RELEKVLKKESELI 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 683 KISEQVEVLQKEKDQLQKrrHNVDEKLKNGRVLSPEEEHVLfQLEEGIEALEAAIEyRNESIQNRQKSLRASFHNLSRGE 762
Cdd:PRK03918 497 KLKELAEQLKELEEKLKK--YNLEELEKKAEEYEKLKEKLI-KLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEEEL 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 763 ANVLEKL-----ACLSPVEIR-TILFRYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRELESALDHLKLQCDRRLTL 836
Cdd:PRK03918 573 AELLKELeelgfESVEELEERlKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462625326 837 QQK----EHEQKMQLLLHhfKEQDGEGIMETFKTYEDKIQQLEKDLYFYKKTSRDHKKKLKEL 895
Cdd:PRK03918 653 EKKyseeEYEELREEYLE--LSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
364-878 |
3.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 3.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 364 LKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVEL 443
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 444 IETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQL 523
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 524 QRKLREENEKRKQLDAVIKRDQQKIKEI-QLKTGQEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEK 602
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLeEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 603 VLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLK----------------ISTRLNLLEQEL 666
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavavligveaayeaaLEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 667 SEKNVQ-LQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLK-----NGRVLSPEEEHVLFQLEEGIEALEAAIEYR 740
Cdd:COG1196 552 VVEDDEvAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAigaavDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 741 NESIQNRQKSLRASFHNLSRG--EANVLEKLACLSPVEIRTILFRYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRE 818
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEgeGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462625326 819 LESALDHLKLQCDRRLTLQQKEHEQKMQLLLHHFKEQDGEGI-----METFKTYEDKIQQLEKDL 878
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALeelpePPDLEELERELERLEREI 776
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
466-895 |
6.47e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 6.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 466 KLQKEFRKKMDAAKLRVQVLQKKQQD-SKKLASLSiQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRD 544
Cdd:PRK03918 193 ELIKEKEKELEEVLREINEISSELPElREELEKLE-KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 545 QQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKgsfgSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKreaIV 624
Cdd:PRK03918 272 KKEIEELEEKVKELKELKEKAEEYIKLSEFYEE----YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE---LK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 625 SKKEALLQEKSHLEN--KKLRSSQALNTDSLKISTRLNLLEQELSEKNVQlqtSTAEEKTKISEQVEVLQKEKDQLQKRR 702
Cdd:PRK03918 345 KKLKELEKRLEELEErhELYEEAKAKKEELERLKKRLTGLTPEKLEKELE---ELEKAKEEIEEEISKITARIGELKKEI 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 703 HNVD---EKLKNGRVLSP------EEEHVLFQLEEGIEALEaAIEYRNESIQNRQKSLRASFHNLsRGEANVLEKLACLS 773
Cdd:PRK03918 422 KELKkaiEELKKAKGKCPvcgrelTEEHRKELLEEYTAELK-RIEKELKEIEEKERKLRKELREL-EKVLKKESELIKLK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 774 PVEIRTILFRYFNKVVNLREAERKQQLYnEEMKMKVLERDNMVRELESALDHLKLQCDRRLTLQQKEHEQKMQLL-LHHF 852
Cdd:PRK03918 500 ELAEQLKELEEKLKKYNLEELEKKAEEY-EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAeLLKE 578
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 2462625326 853 KEQDGegiMETFKTYEDKIQQLEKdlyFYKK--TSRDHKKKLKEL 895
Cdd:PRK03918 579 LEELG---FESVEELEERLKELEP---FYNEylELKDAEKELERE 617
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
517-832 |
7.39e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 7.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 517 KYQKIQLQRKLREENEKRKQLDAVIK--RDQQKIKEIQLKTGQE-EGLKPKAEDLDACNLKRRKGSFgsIDHLQKLDEQK 593
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNelERQLKSLERQAEKAERyKELKAELRELELALLVLRLEEL--REELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 594 KWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLrssQALNTDSLKISTRLNLLEQELSEKNVQL 673
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI---SRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 674 QTStAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKngrvlspEEEHVLFQLEEGIEALEAAIEYRN----------ES 743
Cdd:TIGR02168 326 EEL-ESKLDELAEELAELEEKLEELKEELESLEAELE-------ELEAELEELESRLEELEEQLETLRskvaqlelqiAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 744 IQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIRTILFRYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRELESAL 823
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
....*....
gi 2462625326 824 DHLKLQCDR 832
Cdd:TIGR02168 478 DAAERELAQ 486
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
352-714 |
2.02e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 352 DETQKSDlenEDLKIDCLQESQEL----NLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSL 427
Cdd:PTZ00121 1537 DEAKKAE---EKKKADELKKAEELkkaeEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 428 KVTKLEHDAEQAKVELiETQKQLQELENKDlsdvAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLAS-LSIQNEKRA 506
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAE-EEKKKVEQLKKKE----AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEeAKKAEEDEK 1688
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 507 NELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGlKPKAEDLDACNLKRRKGSFGSIDHL 586
Cdd:PTZ00121 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED-KKKAEEAKKDEEEKKKIAHLKKEEE 1767
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 587 QKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREaiVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQEL 666
Cdd:PTZ00121 1768 KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD--IFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEE 1845
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2462625326 667 SEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRV 714
Cdd:PTZ00121 1846 ADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKI 1893
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
603-878 |
6.25e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 6.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 603 VLNQRQELEELEADLKKREAIVSKKEALLQEKSHlenkklrSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKt 682
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRK-------ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE- 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 683 KISEQVEVLQKEKDQLQKRRHNVDEKLKngrvlspEEEHVLFQLEEGIEALEAAIEYRNESIQN---RQKSLRASFHNLS 759
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLE-------EAEEELAEAEAEIEELEAQIEQLKEELKAlreALDELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 760 RGEANVLEKLACLSPvEIRTILFRYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRELESALDhlklqcdrrltlQQK 839
Cdd:TIGR02168 817 EEAANLRERLESLER-RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN------------ERA 883
|
250 260 270
....*....|....*....|....*....|....*....
gi 2462625326 840 EHEQKMQLLLHHFKEQdgegiMETFKTYEDKIQQLEKDL 878
Cdd:TIGR02168 884 SLEEALALLRSELEEL-----SEELRELESKRSELRREL 917
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
351-896 |
6.64e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.82 E-value: 6.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 351 QDETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKtgNDAKSVSKQYSLKVT 430
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK--VDDEEKLKESEKEKK 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 431 KLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELE 510
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 511 QSVDhmkyQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKpkaedldacnlkrrkgsfgsiDHLQKLD 590
Cdd:pfam02463 405 KEAQ----LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEE---------------------LEKQELK 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 591 EQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRssqaLNTDSLKISTRLNLLEQELSEKN 670
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVL----LALIKDGVGGRIISAHGRLGDLG 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 671 VQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQNRQKS 750
Cdd:pfam02463 536 VAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 751 LRASFHNLSRGEANVLEKLACLSPVEIRTILFRYFNKVVNLREAER----------KQQLYNEEMKMKVLERDNMVRELE 820
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKsevkaslselTKELLEIQELQEKAESELAKEEIL 695
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462625326 821 SALDHLKLQcDRRLTLQQKEHEQKMQLLLHHFKEQDGEGIMETFKTYEDKIQQLEKDLYFYKKTSRDHKKKLKELV 896
Cdd:pfam02463 696 RRQLEIKKK-EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS 770
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
604-912 |
3.04e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 3.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 604 LNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQelseknvqlqtsTAEEKTK 683
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ------------LEQEEEK 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 684 ISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAaiEYRNESIQNRQKSLRASFHNLSRGEA 763
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEA 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 764 NVLEKLACLSPVEIRTILFR-------YFNKVVNLREAERKQQLYN-----EEMKMKVLERDNMVRELESALDHLKLQCD 831
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEkeiqelqEQRIDLKEQIKSIEKEIENlngkkEELEEELEELEAALRDLESRLGDLKKERD 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 832 RRLT----LQQKEHEQKMQL--LLHHFKEQDG--EGIMETFKTYEDKIQQLEKdlYFYKKTSRDHKKKLKELVGEAIRR- 902
Cdd:TIGR02169 893 ELEAqlreLERKIEELEAQIekKRKRLSELKAklEALEEELSEIEDPKGEDEE--IPEEELSLEDVQAELQRVEEEIRAl 970
|
330
....*....|....
gi 2462625326 903 ----QLAPSEYQEA 912
Cdd:TIGR02169 971 epvnMLAIQEYEEV 984
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
385-970 |
5.76e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 5.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 385 RILTEAKQKMRELTINIKMKEDLIKELIKtgndaksvskqyslkvtKLEHDAEQAKVELIETQKQLQELENKDLSDVAMK 464
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKL-----------------QELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 465 VKLQKEFRKKMDA-AKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKR 543
Cdd:pfam02463 232 LKLNEERIDLLQElLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 544 DQQKIKEIQLKTGQEEGlkpkaedldacNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEAD-----LK 618
Cdd:pfam02463 312 DEEKLKESEKEKKKAEK-----------ELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEellakKK 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 619 KREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQL 698
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 699 QKRRHnVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIR 778
Cdd:pfam02463 461 LKDEL-ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 779 TILFRYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRELESALDHLKLQcdrRLTLQQKEHEQKMQLLLHHFKEQDGE 858
Cdd:pfam02463 540 NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLP---LKSIAVLEIDPILNLAQLDKATLEAD 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 859 GIMETFKTYEDKIQQLEKDLyfykktSRDHKKKLKELVGEAIRRQLAPSEYQEAGDGVLKPEGGGMLSEELKWASRPESM 938
Cdd:pfam02463 617 EDDKRAKVVEGILKDTELTK------LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELA 690
|
570 580 590
....*....|....*....|....*....|..
gi 2462625326 939 KLSGREREMDSSASSLRTQPNPQKLWEDIPEL 970
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEEL 722
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
353-895 |
7.44e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 7.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 353 ETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKEL----------IKTGNDAKSVS 422
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLnsdlskinseIKNDKEQKNKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 423 KQYSLK------------------VTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEF---RKKMDAAKLR 481
Cdd:TIGR04523 123 EVELNKlekqkkenkknidkflteIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIdkiKNKLLKLELL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 482 VQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLR-----------EENEKRKQLDAVIKRDQQKIKE 550
Cdd:TIGR04523 203 LSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISntqtqlnqlkdEQNKIKKQLSEKQKELEQNNKK 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 551 IQLKTGQEEGLKPKAEDL----DACNLKRRKGSFGSIDhlQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSK 626
Cdd:TIGR04523 283 IKELEKQLNQLKSEISDLnnqkEQDWNKELKSELKNQE--KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 627 KEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNvqlqtstaEEKTKISEQVEVLQKEKDQLQKRRhnvd 706
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE--------KLNQQKDEQIKKLQQEKELLEKEI---- 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 707 EKLKNGRVLSPEE----EHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIRTILF 782
Cdd:TIGR04523 429 ERLKETIIKNNSEikdlTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKEL 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 783 RYFNKVVNLREAERKQQLynEEMKMKVLERDNMVRELESALDHLKLQCDRRLTLQQKEHEQKMQLLLHHFK---EQDGEG 859
Cdd:TIGR04523 509 EEKVKDLTKKISSLKEKI--EKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQkslKKKQEE 586
|
570 580 590
....*....|....*....|....*....|....*.
gi 2462625326 860 IMETFKTYEDKIQQLEKDLYFYKKTSRDHKKKLKEL 895
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
480-898 |
9.00e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 9.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 480 LRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEE 559
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 560 GLKPKAEdldacnlkrrkgsfgsidhLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEkshlen 639
Cdd:COG4717 127 LLPLYQE-------------------LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEE------ 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 640 kklrssqALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKtKISEQVEVLQKEKDQL--QKRRHNVDEKLKNGRVL-- 715
Cdd:COG4717 182 -------LLEQLSLATEEELQDLAEELEELQQRLAELEEELE-EAQEELEELEEELEQLenELEAAALEERLKEARLLll 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 716 -----------------SPEEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLAC---LSPV 775
Cdd:COG4717 254 iaaallallglggsllsLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAalgLPPD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 776 EIRTILFRYFNKVVNLREAERKQQLYNEEMKMKVL--ERDNMVREL----ESALDHLKLQCDRRLTLQQKEHEQKMQLLL 849
Cdd:COG4717 334 LSPEELLELLDRIEELQELLREAEELEEELQLEELeqEIAALLAEAgvedEEELRAALEQAEEYQELKEELEELEEQLEE 413
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 2462625326 850 hHFKEQDGEGIMETFKTYEDKIQQLEKDLYFYKKTSRDHKKKLKELVGE 898
Cdd:COG4717 414 -LLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAE 461
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
365-763 |
1.70e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.31 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 365 KIDCLQESQELNLQ-KLKNSERILTEAKQKMRELTINIKMKE--DLIKELIKTGNDAKSVSKQYSLKVTKLEHDAE---Q 438
Cdd:COG5022 770 RIKKIQVIQHGFRLrRLVDYELKWRLFIKLQPLLSLLGSRKEyrSYLACIIKLQKTIKREKKLRETEEVEFSLKAEvliQ 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 439 AKVELIETQKQLQELENKDLSDvamkvklqkEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQsvdhmky 518
Cdd:COG5022 850 KFGRSLKAKKRFSLLKKETIYL---------QSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKK------- 913
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 519 qkiQLQRKLREENEKRKQLDAVIKRdqqKIKEIQLKTGQEEglkpkaedldacnlkrrkgSFGSIDHLQKLDEQKKWLDE 598
Cdd:COG5022 914 ---SLSSDLIENLEFKTELIARLKK---LLNNIDLEEGPSI-------------------EYVKLPELNKLHEVESKLKE 968
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 599 EVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHlENKKLRSSQALNTDSLKISTRLNLLEQELSEknvqlQTSTA 678
Cdd:COG5022 969 TSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSK-QYGALQESTKQLKELPVEVAELQSASKIISS-----ESTEL 1042
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 679 EEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEhvlfqLEEGIEALEAAIEYRNESIQNRQKSLRASFHNL 758
Cdd:COG5022 1043 SILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLY-----QLESTENLLKTINVKDLEVTNRNLVKPANVLQF 1117
|
....*
gi 2462625326 759 SRGEA 763
Cdd:COG5022 1118 IVAQM 1122
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
586-876 |
2.03e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 586 LQKLDEQKkwldEEVEKVLNQRQELEELEADL--KKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTrLNLLE 663
Cdd:TIGR02168 202 LKSLERQA----EKAERYKELKAELRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE-LRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 664 QELSEKNVQLQTSTAEEKTKISEqvevLQKEKDQLQKRRHNVDEKLKngrVLSPEEEHVLFQLEEGIEALeAAIEYRNES 743
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISR----LEQQKQILRERLANLERQLE---ELEAQLEELESKLDELAEEL-AELEEKLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 744 IQNRQKSLRASFHNLSRGEANVLEKLAclspvEIRTILFRYFNKVVNLREAERKQQLyneemkmkvlerdnmvrELESAL 823
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLE-----ELEEQLETLRSKVAQLELQIASLNN-----------------EIERLE 406
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462625326 824 DHLKLQCDRRLTLQQKEHEQKMQLLLHHFKEQDG------EGIMETFKTYEDKIQQLEK 876
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAeleeleEELEELQEELERLEEALEE 465
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
384-843 |
3.23e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 384 ERILTEAKQKMRELTINIKMKEDliKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAK------VELI----ETQKQLQEL 453
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEE--KDLHERLNGLESELAELDEEIERYEEQREQARetrdeaDEVLeeheERREELETL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 454 EnKDLSDVAMKVKlqkEFRKKMDAAKLRVQVLQKKQQD-----SKKLASLSIqNEKRANELEQSVDHMKYQKIQLQRKLR 528
Cdd:PRK02224 257 E-AEIEDLRETIA---ETEREREELAEEVRDLRERLEEleeerDDLLAEAGL-DDADAEAVEARREELEDRDEELRDRLE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 529 EENEKRKQLDAVIKRDQQKIKEIQlktGQEEGLKPKAEDLDA----CNLKRRKGSfGSIDHLQK---------------L 589
Cdd:PRK02224 332 ECRVAAQAHNEEAESLREDADDLE---ERAEELREEAAELESeleeAREAVEDRR-EEIEELEEeieelrerfgdapvdL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 590 DEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLE-NKKLRSS---QALNTDSLKISTrlnlLEQE 665
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPEcGQPVEGSphvETIEEDRERVEE----LEAE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 666 LSEknVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQ 745
Cdd:PRK02224 484 LED--LEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 746 ---NRQKSLRASFHNLSRGEANVLEKLACLSpvEIRTILFR---YFNKVVNLREAERKQQLYNEEMKMKVLERDNMVREL 819
Cdd:PRK02224 562 eaeEEAEEAREEVAELNSKLAELKERIESLE--RIRTLLAAiadAEDEIERLREKREALAELNDERRERLAEKRERKREL 639
|
490 500
....*....|....*....|....
gi 2462625326 820 ESALDhlklqcDRRLTLQQKEHEQ 843
Cdd:PRK02224 640 EAEFD------EARIEEAREDKER 657
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
520-651 |
3.90e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 3.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 520 KIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKgsfgsIDHLQKLDEQKK-WLDE 598
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE-----LQKLEKRLLQKEeNLDR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2462625326 599 EVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTD 651
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
485-717 |
4.08e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 485 LQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQ------------ 552
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRaeleaqkeelae 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 553 -LKTGQEEGLKPKAEdldacNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADL-KKREAIVSKKEAL 630
Cdd:COG4942 109 lLRALYRLGRQPPLA-----LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELeAERAELEALLAEL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 631 LQEKSHLENKKLRSSQALNtdslKISTRLNLLEQELSEKnvqlqtstAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLK 710
Cdd:COG4942 184 EEERAALEALKAERQKLLA----RLEKELAELAAELAEL--------QQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
....*..
gi 2462625326 711 NGRVLSP 717
Cdd:COG4942 252 KGKLPWP 258
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
378-629 |
4.45e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 378 QKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQElenkd 457
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE----- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 458 lsdvamkvkLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQN----EKRANELEQSVDHMKYQKIQLQRKLREENEK 533
Cdd:COG4942 95 ---------LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDfldaVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 534 RKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLdacnlkrrkgsfgsidhLQKLDEQKKWLDEEVEKVLNQRQELEEL 613
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKL-----------------LARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|....*.
gi 2462625326 614 EADLKKREAIVSKKEA 629
Cdd:COG4942 229 IARLEAEAAAAAERTP 244
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
423-551 |
7.88e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 7.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 423 KQYSLKVTKLEHDA----EQAKVElIETQKQLQELENKDLSDvAMKVKLQKEFR-KKMDAAKLRVQVLQKKQQDSKKLAS 497
Cdd:PRK12704 27 KIAEAKIKEAEEEAkrilEEAKKE-AEAIKKEALLEAKEEIH-KLRNEFEKELReRRNELQKLEKRLLQKEENLDRKLEL 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2462625326 498 LsiqnEKRANELEQsvdhmkyQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEI 551
Cdd:PRK12704 105 L----EKREEELEK-------KEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
469-738 |
9.01e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 9.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 469 KEFRKKMDAAKLRVQVLQKKQQDSKKLAslsiQNEKRANELEQSVDHMKYQKIQ-----LQRKLREENEKRKQLDAVIKR 543
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYA----AARERLAELEYLRAALRLWFAQrrlelLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 544 DQQKIKEIQlktgqeeglkpkaEDLDACNLKRRKGSFGSIDHLQKldeQKKWLDEEVEKVLNQRQELEELEADLKkreai 623
Cdd:COG4913 314 LEARLDALR-------------EELDELEAQIRGNGGDRLEQLER---EIERLERELEERERRRARLEALLAALG----- 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 624 vskkEALLQEKSHLENKKLRSSQALNTdslkISTRLNLLEQELSEKNVQLQTSTAEEKTkiseqvevLQKEKDQLQKRRH 703
Cdd:COG4913 373 ----LPLPASAEEFAALRAEAAALLEA----LEEELEALEEALAEAEAALRDLRRELRE--------LEAEIASLERRKS 436
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462625326 704 NVDEKLKNGR-----VLSPEEEHVLF-----QLEEGIEALEAAIE 738
Cdd:COG4913 437 NIPARLLALRdalaeALGLDEAELPFvgeliEVRPEEERWRGAIE 481
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
532-770 |
9.25e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 9.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 532 EKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKgsfgsidHLQKLDEQKKWLDEEVEKVlnqRQELE 611
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-------RIRALEQELAALEAELAEL---EKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 612 ELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQtstaEEKTKISEQVEVL 691
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR----ADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462625326 692 QKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIeyrnESIQNRQKSLRASFHNLSRGEANVLEKLA 770
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL----AELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
412-899 |
9.77e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 9.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 412 IKTGNDAKSVSKQYSLKVTKLEHDAEQAKveLIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAK----LRVQVLQK 487
Cdd:PTZ00121 1178 AEAARKAEEVRKAEELRKAEDARKAEAAR--KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKkaeeERNNEEIR 1255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 488 KQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKqLDAVIKRDQQKIKEIQLKTGQEEG------L 561
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK-ADEAKKKAEEAKKADEAKKKAEEAkkkadaA 1334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 562 KPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLD-----------------EEVEKVLNQRQELEELEA---DLKKRE 621
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEkkkeeakkkadaakkkaEEKKKADEAKKKAEEDKKkadELKKAA 1414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 622 AIVSKKEAL---LQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTS-----TAEEKTKISEQVEVLQK 693
Cdd:PTZ00121 1415 AAKKKADEAkkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAdeakkKAEEAKKADEAKKKAEE 1494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 694 EKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKlacLS 773
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA---KK 1571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 774 PVEIRTILFRyfnKVVNLREAERKQ-----QLYNEEMKMKVLERDNMVRELESALDHLKLQCDRRLTLQQKEHEQKMQLL 848
Cdd:PTZ00121 1572 AEEDKNMALR---KAEEAKKAEEARieevmKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 2462625326 849 LHHFKEQDGEGIM----ETFKTYEDKIQQLEkdlyfYKKTSRDHKKKLKELVGEA 899
Cdd:PTZ00121 1649 AEELKKAEEENKIkaaeEAKKAEEDKKKAEE-----AKKAEEDEKKAAEALKKEA 1698
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
349-734 |
9.84e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 9.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 349 DTQDETQKSDLENedlKIDCLQESQELNLQKLKNSERI----LTEAKQKMRELTINIKMKEDLIKEliktgnDAKSVSKQ 424
Cdd:pfam15921 244 EDQLEALKSESQN---KIELLLQQHQDRIEQLISEHEVeitgLTEKASSARSQANSIQSQLEIIQE------QARNQNSM 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 425 YSLKVTKLEHDAEQAKVELIETQK----QLQELE------NKDLSDVAMKvklQKEFRKKMDAAKLRVQVLQKKQQDSKK 494
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRmyedKIEELEkqlvlaNSELTEARTE---RDQFSQESGNLDDQLQKLLADLHKREK 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 495 LASLSIQNEKRANELEQ----SVDHmkyqkiqLQRKLREENEKRKQLDAVIKRDQQKIKeiqlktGQEEGlkpkaedlda 570
Cdd:pfam15921 392 ELSLEKEQNKRLWDRDTgnsiTIDH-------LRRELDDRNMEVQRLEALLKAMKSECQ------GQMER---------- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 571 cNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLnqrQELEELEADLKKREAIVSKKEALLQEKShlenkklRSSQALNT 650
Cdd:pfam15921 449 -QMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV---EELTAKKMTLESSERTVSDLTASLQEKE-------RAIEATNA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 651 DSLKISTRLNLLEQELSE--------KNVQLQTSTAE----EKTKISE----QVE--------------VLQKEKDQLQK 700
Cdd:pfam15921 518 EITKLRSRVDLKLQELQHlknegdhlRNVQTECEALKlqmaEKDKVIEilrqQIEnmtqlvgqhgrtagAMQVEKAQLEK 597
|
410 420 430
....*....|....*....|....*....|....
gi 2462625326 701 RRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALE 734
Cdd:pfam15921 598 EINDRRLELQEFKILKDKKDAKIRELEARVSDLE 631
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
431-693 |
1.34e-04 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 46.00 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 431 KLEHDAEQAKVELIETQKQLQELENKDLS----DVAMKVKLQkEFRKKMDAAKLRVQ-VLQKKQQDSKKLASLsiqnEKR 505
Cdd:pfam09726 399 RLEQDIKKLKAELQASRQTEQELRSQISSltslERSLKSELG-QLRQENDLLQTKLHnAVSAKQKDKQTVQQL----EKR 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 506 ANELEQSvdhmkyqKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGqeEGLKPKAEDLDAcnlkrrkgsfgsidH 585
Cdd:pfam09726 474 LKAEQEA-------RASAEKQLAEEKKRKKEEEATAARAVALAAASRGECT--ESLKQRKRELES--------------E 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 586 LQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENkklrssqalntdSLKISTRLNL-LEQ 664
Cdd:pfam09726 531 IKKLTHDIKLKEEQIRELEIKVQELRKYKESEKDTEVLMSALSAMQDKNQHLEN------------SLSAETRIKLdLFS 598
|
250 260
....*....|....*....|....*....
gi 2462625326 665 ELSEKNVQLQTSTAEEKTKISEQVEVLQK 693
Cdd:pfam09726 599 ALGDAKRQLEIAQGQIYQKDQEIKDLKQK 627
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
365-580 |
1.94e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 365 KIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELI 444
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 445 ETQKQLQE-----------------LENKDLSDVAMKVKLQKEFrkkmdaAKLRVQVLQKKQQDSKKLASLSIQNEKRAN 507
Cdd:COG4942 101 AQKEELAEllralyrlgrqpplallLSPEDFLDAVRRLQYLKYL------APARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 508 ELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQ--------LKTGQEEGLKPKAEDLDACNLKRRKGS 579
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQqeaeeleaLIARLEAEAAAAAERTPAAGFAALKGK 254
|
.
gi 2462625326 580 F 580
Cdd:COG4942 255 L 255
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
346-826 |
2.58e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.43 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 346 ELSDTQDETQKSDLENEDLKIDCLQESQEL----NLQKLKNSERILTEAKQ---KMRELTINIKMKEDLIKELIKTGNDa 418
Cdd:TIGR01612 1319 DINDIKKELQKNLLDAQKHNSDINLYLNEIaniyNILKLNKIKKIIDEVKEytkEIEENNKNIKDELDKSEKLIKKIKD- 1397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 419 ksvskQYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSD---VAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKL 495
Cdd:TIGR01612 1398 -----DINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEesnIDTYFKNADENNENVLLLFKNIEMADNKSQHILKI 1472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 496 ASLSIQNEK--RANELEQSVDHMKYQKIQLQRKlREENEKRKQLDAVIKRD----QQKIKEIQLKTGQEEGLKPKAEDLD 569
Cdd:TIGR01612 1473 KKDNATNDHdfNINELKEHIDKSKGCKDEADKN-AKAIEKNKELFEQYKKDvtelLNKYSALAIKNKFAKTKKDSEIIIK 1551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 570 ACNLKRRKGSFGSIDHLQKLDEQKK---WLDEEVEK-------VLNQRQELEELEADLKKREAIVSKKEALLQEKSHLEN 639
Cdd:TIGR01612 1552 EIKDAHKKFILEAEKSEQKIKEIKKekfRIEDDAAKndksnkaAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEK 1631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 640 KKlrSSQALNTDSLKISTRLNLLE--QELSEknvqlqtSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNgrvlsp 717
Cdd:TIGR01612 1632 KI--SSFSIDSQDTELKENGDNLNslQEFLE-------SLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKN------ 1696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 718 EEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLA----------------------CLSPV 775
Cdd:TIGR01612 1697 YEIGIIEKIKEIAIANKEEIESIKELIEPTIENLISSFNTNDLEGIDPNEKLEeynteigdiyeefielyniiagCLETV 1776
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462625326 776 --------EIRTILFRYFNKVVNLREAERKQQLYNEEMKMKvlERDNMVRELESALDHL 826
Cdd:TIGR01612 1777 skepitydEIKNTRINAQNEFLKIIEIEKKSKSYLDDIEAK--EFDRIINHFKKKLDHV 1833
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
347-692 |
2.73e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 347 LSDTQ---DETQKSDLENEDLKIDCLQESQEL-----NLQKLKNSEriLTEAKQKMRELTInikmkEDLIKELIKTGNDA 418
Cdd:PRK11281 65 LEQTLallDKIDRQKEETEQLKQQLAQAPAKLrqaqaELEALKDDN--DEETRETLSTLSL-----RQLESRLAQTLDQL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 419 KSVSK---QYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAaklrvqvlqkkqqdskKL 495
Cdd:PRK11281 138 QNAQNdlaEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQA----------------EQ 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 496 ASLSIQNEKRANELEQSVdhmkyqkiQLQRKLreeNEKRKQLDAVIKRDQQKIKEIQlktgqeeglkpkaedlDACNLKR 575
Cdd:PRK11281 202 ALLNAQNDLQRKSLEGNT--------QLQDLL---QKQRDYLTARIQRLEHQLQLLQ----------------EAINSKR 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 576 RKGSfgsidhlqkldEQKkwldeeVEKVLNQRQELEELEADLKKREAIVskkeallqekshleNKKLrsSQALntdsLKI 655
Cdd:PRK11281 255 LTLS-----------EKT------VQEAQSQDEAARIQANPLVAQELEI--------------NLQL--SQRL----LKA 297
|
330 340 350
....*....|....*....|....*....|....*...
gi 2462625326 656 STRLN-LLEQELSEKNvQLQTSTAEEKTkISEQVEVLQ 692
Cdd:PRK11281 298 TEKLNtLTQQNLRVKN-WLDRLTQSERN-IKEQISVLK 333
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
586-754 |
2.83e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 586 LQKLDEQKKWLDEEVEKVLNQ----RQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQA-----------LNT 650
Cdd:COG3883 32 LEAAQAELDALQAELEELNEEynelQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRsggsvsyldvlLGS 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 651 DSL-KISTRLNLLEQeLSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEG 729
Cdd:COG3883 112 ESFsDFLDRLSALSK-IADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAE 190
|
170 180
....*....|....*....|....*
gi 2462625326 730 IEALEAAIEYRNESIQNRQKSLRAS 754
Cdd:COG3883 191 EAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
481-753 |
3.17e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 481 RVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKyqkiQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEG 560
Cdd:PRK02224 466 HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE----DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEE 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 561 LKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENK 640
Cdd:PRK02224 542 LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAEL 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 641 KLRSSQALNTDSLKISTrlnlLEQELSEKNV---QLQTSTAEE-KTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLS 716
Cdd:PRK02224 622 NDERRERLAEKRERKRE----LEAEFDEARIeeaREDKERAEEyLEQVEEKLDELREERDDLQAEIGAVENELEELEELR 697
|
250 260 270
....*....|....*....|....*....|....*..
gi 2462625326 717 PEEEHvlfqLEEGIEALEAAIEyRNESIQNRQKSLRA 753
Cdd:PRK02224 698 ERREA----LENRVEALEALYD-EAEELESMYGDLRA 729
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
353-700 |
4.19e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 353 ETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAksvskqySLKVTKL 432
Cdd:pfam05483 446 QAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDM-------TLELKKH 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 433 EHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRvqvLQKKQQDSKKLASLSIQNEKRANELEQS 512
Cdd:pfam05483 519 QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCK---LDKSEENARSIEYEVLKKEKQMKILENK 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 513 VDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEglkpkaedldaCNLKRRKGSFGSI-DHLQKLDE 591
Cdd:pfam05483 596 CNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLE-----------LELASAKQKFEEIiDNYQKEIE 664
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 592 QKKWLDE----EVEKVLNQRQELEELEADLKKR-EAIVSKKEALLQEKSHLENKKLRSSqalntdslkiSTRLNLL---E 663
Cdd:pfam05483 665 DKKISEEklleEVEKAKAIADEAVKLQKEIDKRcQHKIAEMVALMEKHKHQYDKIIEER----------DSELGLYknkE 734
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2462625326 664 QELSEKNVQLQTSTAE---EKTKISEQVEVLQKEKDQLQK 700
Cdd:pfam05483 735 QEQSSAKAALEIELSNikaELLSLKKQLEIEKEEKEKLKM 774
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
353-752 |
7.23e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 7.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 353 ETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDlIKELIKTGNDAKSVSKQYSLKVTKL 432
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 433 EHDAEQAKVELIETQKQLQELENKDlSDVAMKVKLQKEFRKKMDAAKLRVQVLQK-------KQQDSKKLASLSIQN--- 502
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKE-ERLEELKKKLKELEKRLEELEERHELYEEakakkeeLERLKKRLTGLTPEKlek 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 503 -----EKRANELEQSVDHMKYQKIQLQRKLREEN----------------------EKRKQLDAVIKRDQQKI-KEIQLK 554
Cdd:PRK03918 392 eleelEKAKEEIEEEISKITARIGELKKEIKELKkaieelkkakgkcpvcgrelteEHRKELLEEYTAELKRIeKELKEI 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 555 TGQEEGLKPKAEDLD---------------ACNLKRRKGSFGSIDhLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKK 619
Cdd:PRK03918 472 EEKERKLRKELRELEkvlkkeseliklkelAEQLKELEEKLKKYN-LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 620 REAIVSKKEALLQEKSHLENKK---LRSSQALNTDSLK-ISTRLNLLEqELSEKNVQLQTSTAE----------EKTKIS 685
Cdd:PRK03918 551 LEELKKKLAELEKKLDELEEELaelLKELEELGFESVEeLEERLKELE-PFYNEYLELKDAEKElereekelkkLEEELD 629
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462625326 686 EQVEVLQKEKDQLQKRRHNVDEKLKNgrvLSPEE----EHVLFQLEEGIEALEAAIEYRNESIQNRQKSLR 752
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKK---YSEEEyeelREEYLELSRELAGLRAELEELEKRREEIKKTLE 697
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
345-551 |
7.33e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 7.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 345 VELSDTQDETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTE----AKQKMRELTINIKMKEDLIKELIKTGNDAKS 420
Cdd:pfam17380 353 IRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQEleaaRKVKILEEERQRKIQQQKVEMEQIRAEQEEA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 421 VSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSK------- 493
Cdd:pfam17380 433 RQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKqamieee 512
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 494 ------------KLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAvIKRDQQKIKEI 551
Cdd:pfam17380 513 rkrkllekemeeRQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEA-MEREREMMRQI 581
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
431-709 |
7.81e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 7.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 431 KLEHDAEQAkVELIETQKQLQELENKDLsdvamkVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASlsiQNEKRANELE 510
Cdd:TIGR02169 202 RLRREREKA-ERYQALLKEKREYEGYEL------LKEKEALERQKEAIERQLASLEEELEKLTEEIS---ELEKRLEEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 511 QSVDHMKYQ--------KIQLQRKLREENEKRKQLDAVI--KRDQQKIKEIQLKTGQEE--GLKPKAEDLDacnlkrrkg 578
Cdd:TIGR02169 272 QLLEELNKKikdlgeeeQLRVKEKIGELEAEIASLERSIaeKERELEDAEERLAKLEAEidKLLAEIEELE--------- 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 579 sfGSIDHLQKLDEQKKWLDEEVEKVLNQ-RQELEELEADL-----------KKREAIVSKKEALLQEKSHLENKKLRSSQ 646
Cdd:TIGR02169 343 --REIEEERKRRDKLTEEYAELKEELEDlRAELEEVDKEFaetrdelkdyrEKLEKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462625326 647 A---LNTDSLKISTRLNLLEQELSEKNVQLQT------STAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKL 709
Cdd:TIGR02169 421 EladLNAAIAGIEAKINELEEEKEDKALEIKKqewkleQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
482-642 |
8.34e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.16 E-value: 8.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 482 VQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQR--KLREENEKRKQLDAVIKRDQQKikeiqlktgqEE 559
Cdd:PRK12705 22 VVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERnqQRQEARREREELQREEERLVQK----------EE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 560 GLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQE------LEELEADLKKREAIVSKKealLQE 633
Cdd:PRK12705 92 QLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEqarkllLKLLDAELEEEKAQRVKK---IEE 168
|
....*....
gi 2462625326 634 KSHLENKKL 642
Cdd:PRK12705 169 EADLEAERK 177
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
378-558 |
8.48e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 378 QKLKNSERILTEAKQKMRELTINIkmkEDLIKELIKTGNDAKsvskQYSLKVTKLEHDAEQAKVELIETQKQLQELENKD 457
Cdd:PRK00409 495 KRLGLPENIIEEAKKLIGEDKEKL---NELIASLEELERELE----QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 458 LSdvamkvKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIqnekRANELEQSvdhmkyqkiqlQRKLREENEKRKQl 537
Cdd:PRK00409 568 LE------EAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASV----KAHELIEA-----------RKRLNKANEKKEK- 625
|
170 180
....*....|....*....|.
gi 2462625326 538 daviKRDQQKIKEIQLKTGQE 558
Cdd:PRK00409 626 ----KKKKQKEKQEELKVGDE 642
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
370-633 |
9.09e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 9.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 370 QESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELiktgndaksvsKQYSLKVTKLEHDAEQAKVELIETQKQ 449
Cdd:PRK03918 510 EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL-----------EELKKKLAELEKKLDELEEELAELLKE 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 450 LQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLRE 529
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 530 ENEKRKQldaviKRDQQKIKEIQLKTGQEEGLKpkaedldacnlKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQE 609
Cdd:PRK03918 659 EEYEELR-----EEYLELSRELAGLRAELEELE-----------KRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
250 260
....*....|....*....|....
gi 2462625326 610 LEELEADLKKREAIVskKEALLQE 633
Cdd:PRK03918 723 VEELREKVKKYKALL--KERALSK 744
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
374-763 |
9.26e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 9.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 374 ELNLQKLKNSERILTEAKQKMRELTINIKMKEDL---IKELIKTGNDAKSVSKQYSLKVTKLEHDAE--QAKVELIETQK 448
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEELeeeLEELEAELEELREELEKLEKLLQLLPLYQEleALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 449 QLQELENkdlsdvamkvKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLR 528
Cdd:COG4717 147 RLEELEE----------RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 529 EENEKRKQLDAVIKR---------DQQKIKEIQLKTGQE------EGLKPKAEDLDACNLKRRKGSFGSI-DHLQKLDEQ 592
Cdd:COG4717 217 EAQEELEELEEELEQleneleaaaLEERLKEARLLLLIAaallalLGLGGSLLSLILTIAGVLFLVLGLLaLLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 593 KKWLDEEVEKV--LNQRQELE--ELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKIstRLNLLEQELSE 668
Cdd:COG4717 297 KASLGKEAEELqaLPALEELEeeELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--QLEELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 669 KNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSpeEEHVLFQLEEGIEALEAAIEYRNE---SIQ 745
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL--EALDEEELEEELEELEEELEELEEeleELR 452
|
410
....*....|....*...
gi 2462625326 746 NRQKSLRASFHNLSRGEA 763
Cdd:COG4717 453 EELAELEAELEQLEEDGE 470
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
469-745 |
1.07e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 469 KEFRKKMDAAKlrvQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKI 548
Cdd:pfam02463 166 RLKRKKKEALK---KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 549 KEIQLKTGQEEGLKPKAEDLDACNLKRRKgsfgsidHLQKLDEQKKWLDEEVEKVLNQRQELEELEA-DLKKREAIVSKK 627
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKEEEKLAQVL-------KENKEEEKEKKLQEEELKLLAKEEEELKSELlKLERRKVDDEEK 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 628 EALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQK--RRHNV 705
Cdd:pfam02463 316 LKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSaaKLKEE 395
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2462625326 706 DEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQ 745
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEE 435
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
374-717 |
1.57e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 42.73 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 374 ELNLQKLKNSERILTEAKQKmrELTINIKMKEDLIKELIKTGNDakSVSKQYSLKVTKLEhdaeqakvelIETQKQLQEL 453
Cdd:PTZ00108 1005 ERELARLSNKVRFIKHVING--ELVITNAKKKDLVKELKKLGYV--RFKDIIKKKSEKIT----------AEEEEGAEED 1070
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 454 ENKDLSDVAMKVKLQKEF----RKKM------DAAKLRVQvLQKKQQDSKKLASLSIQNEKRAnELEqsvdhmkyqkiQL 523
Cdd:PTZ00108 1071 DEADDEDDEEELGAAVSYdyllSMPIwsltkeKVEKLNAE-LEKKEKELEKLKNTTPKDMWLE-DLD-----------KF 1137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 524 QRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKV 603
Cdd:PTZ00108 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKK 1217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 604 LNQRQELEELEADLKKREAIVSKKEALLQEKShLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTA---EE 680
Cdd:PTZ00108 1218 SNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNN-SSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRpdgES 1296
|
330 340 350
....*....|....*....|....*....|....*..
gi 2462625326 681 KTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSP 717
Cdd:PTZ00108 1297 NGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTAR 1333
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
346-641 |
1.84e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 346 ELSDTQDETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINI-KMKEDLIKELIKTGNDAKSVSKQ 424
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALnDLEARLSHSRIPEIQAELSKLEE 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 425 YSLKVTKLEHDAEQaKVELIETQKQLQELENKDLSDVAMKVKLQK-EFRKKMDAAKLRvqvLQKKQQDSKKLASLSIQNE 503
Cdd:TIGR02169 806 EVSRIEARLREIEQ-KLNRLTLEKEYLEKEIQELQEQRIDLKEQIkSIEKEIENLNGK---KEELEEELEELEAALRDLE 881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 504 KRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKrrkgsfgsi 583
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS--------- 952
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462625326 584 dhLQKLDEQKKWLDEEVEKV--LNQR--QELEELEADL----KKREAIVSKKEALLQEKSHLENKK 641
Cdd:TIGR02169 953 --LEDVQAELQRVEEEIRALepVNMLaiQEYEEVLKRLdelkEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
440-699 |
1.84e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 440 KVELI-------ETQKQLQEL---ENKDLSDVAMKVKLQKEFRKKMDAAKLrvqvLQKKQQDSKKLASL-SIQNEKRANE 508
Cdd:PRK05771 8 KVLIVtlksykdEVLEALHELgvvHIEDLKEELSNERLRKLRSLLTKLSEA----LDKLRSYLPKLNPLrEEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 509 LEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEiqlktgqeegLKP-KAEDLDACNLKRRKGS---FGSID 584
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIER----------LEPwGNFDLDLSLLLGFKYVsvfVGTVP 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 585 HlQKLDEQKKWLDEEVEKVLNQRQELEELEA-DLKKREAIVSK--KEALLQEKSHLENKKLrsSQALNtdslKISTRLNL 661
Cdd:PRK05771 154 E-DKLEELKLESDVENVEYISTDKGYVYVVVvVLKELSDEVEEelKKLGFERLELEEEGTP--SELIR----EIKEELEE 226
|
250 260 270
....*....|....*....|....*....|....*...
gi 2462625326 662 LEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQ 699
Cdd:PRK05771 227 IEKERESLLEELKELAKKYLEELLALYEYLEIELERAE 264
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
384-644 |
2.07e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 384 ERILTEAKQKMRELTINIKMKEDlikELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVElietqkqlQELEnkdlsdVAM 463
Cdd:pfam17380 340 ERMAMERERELERIRQEERKREL---ERIRQEEIAMEISRMRELERLQMERQQKNERVR--------QELE------AAR 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 464 KVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQR-KLREENEKRKQLDAVI- 541
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERlRQQEEERKRKKLELEKe 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 542 KRDQQKIKEIQLKTGQEEGLKPKAEDLDACNlkRRKGSFGSIDHLQK--LDEQKKWLDEEVEKVLNQRQELEELEADLKK 619
Cdd:pfam17380 483 KRDRKRAEEQRRKILEKELEERKQAMIEEER--KRKLLEKEMEERQKaiYEEERRREAEEERRKQQEMEERRRIQEQMRK 560
|
250 260
....*....|....*....|....*....
gi 2462625326 620 REAIVSKKEALLQEKSHL----ENKKLRS 644
Cdd:pfam17380 561 ATEERSRLEAMEREREMMrqivESEKARA 589
|
|
| TOPEUc |
smart00435 |
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ... |
394-531 |
2.19e-03 |
|
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Pssm-ID: 214661 [Multi-domain] Cd Length: 391 Bit Score: 41.57 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 394 MRELTINIKMKEDLIKELIKTGNDA-----------KSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVA 462
Cdd:smart00435 233 LQEQLKELTAKDGNVAEKILAYNRAnrevailcnhqRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRK 312
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462625326 463 MKVKLQKEFRkkmdaaKLRVQVLQKKQQDSKKLASlsiqnEKRANELEQSVdhmkyQKIQLQRKLREEN 531
Cdd:smart00435 313 LKSKFERDNE------KLDAEVKEKKKEKKKEEKK-----KKQIERLEERI-----EKLEVQATDKEEN 365
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
353-718 |
2.21e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 353 ETQKSDLENEDLKIDCLQESQELNLQKLKNSERiltEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKL 432
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQ---SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 433 EHDAEQAKVELIETQKQLQELENKDlsdvAMKVKLQKEFRKKMDAAKLRVQVLQKKqqdSKKLASLSIQNEKRANELEQS 512
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQD----SVKELIIKNLDNTRESLETQLKVLSRS---INKIKQNLEQKQKELKSKEKE 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 513 VDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEglkpkaedldacnlkrrkgsfgsiDHLQKLDEQ 592
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLE------------------------DELNKDDFE 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 593 KKWLDEEVEkVLNQRQELEELEADLKKREAIVSKKEALLQEKSHlENKKLRSSQALNTdsLKISTrlnlLEQELSEKNvq 672
Cdd:TIGR04523 554 LKKENLEKE-IDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEK-EKKDLIKEIEEKE--KKISS----LEKELEKAK-- 623
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2462625326 673 lqtstaEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPE 718
Cdd:TIGR04523 624 ------KENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
344-707 |
2.39e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 344 LVELSDTQDETQKSDLENEDlkIDCLQESQeLNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSK 423
Cdd:PTZ00121 1032 LTEYGNNDDVLKEKDIIDED--IDGNHEGK-AEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTET 1108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 424 QYSLKVTKLEHDAEQAK-VELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQvlqKKQQDSKKLASLSIQN 502
Cdd:PTZ00121 1109 GKAEEARKAEEAKKKAEdARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEA---RKAEDAKKAEAARKAE 1185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 503 E-KRANELEQSVDHMKYQKIQLQRKLREENEKR-----KQLDAVIKRDQQKIKEIQLKTGQEE---GLKPKAEDLDACNL 573
Cdd:PTZ00121 1186 EvRKAEELRKAEDARKAEAARKAEEERKAEEARkaedaKKAEAVKKAEEAKKDAEEAKKAEEErnnEEIRKFEEARMAHF 1265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 574 KRRKGSFGS-----IDHLQKLDEQKKWLD----EEVEKVLNQRQELEEL-EADLKKREAIVSKKEALLQEKSHLENKKLR 643
Cdd:PTZ00121 1266 ARRQAAIKAeearkADELKKAEEKKKADEakkaEEKKKADEAKKKAEEAkKADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462625326 644 SSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDE 707
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
348-698 |
2.87e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 348 SDTQDETQKSDLENEDLKIDCLQESQELN----LQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSK 423
Cdd:pfam10174 434 TDTALTTLEEALSEKERIIERLKEQREREdrerLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGL 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 424 QYSLKVTKLEHDAEQAKVELIETQKQLQELENkdlsdVAMKVKLQKEFrkkmdaaKLRVQVLQKKQQDSKKLASlsiqne 503
Cdd:pfam10174 514 KKDSKLKSLEIAVEQKKEECSKLENQLKKAHN-----AEEAVRTNPEI-------NDRIRLLEQEVARYKEESG------ 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 504 KRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKrdQQKIKEIQLKTGQEEGLKPKAEDLDacNLKRRKGSFGSI 583
Cdd:pfam10174 576 KAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMK--EQNKKVANIKHGQQEMKKKGAQLLE--EARRREDNLADN 651
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 584 DHLQKLDEqkkwLDEEVEKVlnqRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKIStrlnlle 663
Cdd:pfam10174 652 SQQLQLEE----LMGALEKT---RQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAA------- 717
|
330 340 350
....*....|....*....|....*....|....*..
gi 2462625326 664 qeLSEK--NVQLQTSTAEEKTKISEQVEVLQKEKDQL 698
Cdd:pfam10174 718 --ISEKdaNIALLELSSSKKKKTQEEVMALKREKDRL 752
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
601-693 |
3.04e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 601 EKVLNQRQEL----EELEADLKKREAIVSKKEA-LLQEKSHLENKklrsSQALNtdslKISTRLNLLEQELSEKNVQLQT 675
Cdd:PRK12704 57 EALLEAKEEIhklrNEFEKELRERRNELQKLEKrLLQKEENLDRK----LELLE----KREEELEKKEKELEQKQQELEK 128
|
90
....*....|....*...
gi 2462625326 676 STAEEKTKISEQVEVLQK 693
Cdd:PRK12704 129 KEEELEELIEEQLQELER 146
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
525-888 |
3.12e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.81 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 525 RKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRrkGSFGSIDHLQKLDEQKkwlDEEVEKVL 604
Cdd:PLN02939 38 RRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQ--KSTSSDDDHNRASMQR---DEAIAAID 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 605 NQRQE------------LEELEADLKKREA-IVSKKEALLQEKSHLEnKKLRSSQALNTdslkistRLNLLEQELSEKNV 671
Cdd:PLN02939 113 NEQQTnskdgeqlsdfqLEDLVGMIQNAEKnILLLNQARLQALEDLE-KILTEKEALQG-------KINILEMRLSETDA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 672 QLQTStAEEKTkiseQVEVLQkekDQLQKRRHNVDEK--LKNGRVLSPEEEHVLFQLE-----EGIEALEAAI------E 738
Cdd:PLN02939 185 RIKLA-AQEKI----HVEILE---EQLEKLRNELLIRgaTEGLCVHSLSKELDVLKEEnmllkDDIQFLKAELievaetE 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 739 YRNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIRTilfrYFNKVVNLREAERKQQLYNEEMKMkVLERD----N 814
Cdd:PLN02939 257 ERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC----WWEKVENLQDLLDRATNQVEKAAL-VLDQNqdlrD 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 815 MVRELESALDHLKLQ--CDRRLTLQQkeheQKMQLLLHHFKEQDGEgIMETFKTYEDKIQQ----LEKDLYFYKKTSRDH 888
Cdd:PLN02939 332 KVDKLEASLKEANVSkfSSYKVELLQ----QKLKLLEERLQASDHE-IHSYIQLYQESIKEfqdtLSKLKEESKKRSLEH 406
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
601-744 |
5.17e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 601 EKVLNQRQELEELEADL----KKREAIVSKKEALLQEKShlENKKLRSSqalntdslkistrlnlLEQELSEKNVQLQTs 676
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRileeAKKEAEAIKKEALLEAKE--EIHKLRNE----------------FEKELRERRNELQK- 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462625326 677 tAEEKTK-----ISEQVEVLQKEKDQLQKRRHNVDEKLKNgrvlspeeehvLFQLEEGIEALEAAIEYRNESI 744
Cdd:PRK12704 87 -LEKRLLqkeenLDRKLELLEKREEELEKKEKELEQKQQE-----------LEKKEEELEELIEEQLQELERI 147
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
394-702 |
5.89e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 394 MRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRK 473
Cdd:pfam07888 40 LQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 474 KMDAAKLRVQVLQKKQQDSKKLAslsiqneKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIkrdQQKIKEIQL 553
Cdd:pfam07888 120 LLAQRAAHEARIRELEEDIKTLT-------QRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKL---QQTEEELRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 554 KTGQEEGLKPKAEDLDACNLKRRKgsfgSIDHLQKLDEQKKWLDEEVEKVLNQRQELEE-LEADLKKREAIVSKKEALLQ 632
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQD----TITTLTQKLTTAHRKEAENEALLEELRSLQErLNASERKVEGLGEELSSMAA 265
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462625326 633 EKSH----LENKKLRSSQaLNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRR 702
Cdd:pfam07888 266 QRDRtqaeLHQARLQAAQ-LTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEER 338
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
346-700 |
6.95e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 6.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 346 ELSDTQDETQKSDLENEDLKIDCLQESQELNLQK--LKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSK 423
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRkdLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 424 QYSLKVTKLEHDAEQAKVELIETQKQLQELenkdlsdvamkvklqkefRKKMDAAKLRVQVLQKKQQdskklaslsiQNE 503
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDEL------------------RAELTLLNEEAANLRERLE----------SLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 504 KRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQ-LKTGQEEGLKPKAEDLDACNLKRRKGSfgs 582
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLnERASLEEALALLRSELEELSEELRELE--- 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 583 iDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKkrEAIVSKKEALLQEKSHLENKKLrssqalnTDSLKISTRLNLL 662
Cdd:TIGR02168 908 -SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ--ERLSEEYSLTLEEAEALENKIE-------DDEEEARRRLKRL 977
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2462625326 663 EQELSE-KNVQLQT-----STAEEKTKISEQVEVLQKEKDQLQK 700
Cdd:TIGR02168 978 ENKIKElGPVNLAAieeyeELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
480-633 |
8.14e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.15 E-value: 8.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 480 LRVQVLQKKQQDSKKLASLSIQN-EKRANEL-EQSVDHMKYQKIQLQRKL-REENEKRKQLDAVIKRDQQKikeiqlktg 556
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEAKRILEEaKKEAEAIkKEALLEAKEEIHKLRNEFeKELRERRNELQKLEKRLLQK--------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 557 qEEGLKPKAEDLDacnlKRRK---GSFGSIDHLQK-LDEQKKWLDEEVEKvlnQRQELEELeADLKKREAivskKEALLQ 632
Cdd:PRK12704 95 -EENLDRKLELLE----KREEeleKKEKELEQKQQeLEKKEEELEELIEE---QLQELERI-SGLTAEEA----KEILLE 161
|
.
gi 2462625326 633 E 633
Cdd:PRK12704 162 K 162
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
391-619 |
8.45e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.00 E-value: 8.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 391 KQKMRELTINIK---MKEDLIKELIKTGND----AKSVSKQ----YSLKVTKLEHDAEQAKVELIETQKQLQEL--ENKD 457
Cdd:PHA02562 173 KDKIRELNQQIQtldMKIDHIQQQIKTYNKnieeQRKKNGEniarKQNKYDELVEEAKTIKAEIEELTDELLNLvmDIED 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 458 LSDVAMKVKlQKEFRKKMDAAKL-RVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQ 536
Cdd:PHA02562 253 PSAALNKLN-TAAAKIKSKIEQFqKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 537 LDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDAcnlkrrkgsfgsidHLQKLDEQKKWLDEEVEKVLNQRQELEELEAD 616
Cdd:PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKA--------------AIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397
|
...
gi 2462625326 617 LKK 619
Cdd:PHA02562 398 LVK 400
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
377-859 |
8.76e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 377 LQKLKNSERILTEAKQKMRELTiniKMKEDLIKELIKTG-------NDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQ 449
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAK---RMYEDKIEELEKQLvlanselTEARTERDQFSQESGNLDDQLQKLLADLHKREKE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 450 L--QELENKDLSDVAMKVKLQ-KEFRKKMDAAKLRVQVL----------------------QKKQQDSKKLASLSIQNEK 504
Cdd:pfam15921 393 LslEKEQNKRLWDRDTGNSITiDHLRRELDDRNMEVQRLeallkamksecqgqmerqmaaiQGKNESLEKVSSLTAQLES 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 505 RANELEQSVDHMKYQKI--------------QLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDA 570
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMtlessertvsdltaSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEA 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 571 CNLKRrKGSFGSIDHLQKLDEQKKWL--------------DEEVEKVLNQRQ-ELEELEADLKKREAIVSKKEA----LL 631
Cdd:pfam15921 553 LKLQM-AEKDKVIEILRQQIENMTQLvgqhgrtagamqveKAQLEKEINDRRlELQEFKILKDKKDAKIRELEArvsdLE 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 632 QEKSHLEN---KKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEK 708
Cdd:pfam15921 632 LEKVKLVNagsERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQT 711
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 709 LKNGRVLSPEEEHVLfQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPvEIRTILFRYfNKV 788
Cdd:pfam15921 712 RNTLKSMEGSDGHAM-KVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQ-ELSTVATEK-NKM 788
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462625326 789 VNLREAERKQQlynEEMKMKVlerdnmvRELESALDHLKLQCDRRLTLQQKEHEQKMQLLLHH---FKEQDGEG 859
Cdd:pfam15921 789 AGELEVLRSQE---RRLKEKV-------ANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHtldVKELQGPG 852
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
405-647 |
8.82e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 8.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 405 EDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKdlSDVAMK--VKLQKEFRKKMDAAKLRV 482
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAE--IDKLQAeiAEAEAEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 483 QVLQKKQQDSKKLASLSiqnekRANELEQSVDHMKYqkiqlqrklreenekrkqLDAVIKRDQQKIKEIQLKTGQEEGLK 562
Cdd:COG3883 93 RALYRSGGSVSYLDVLL-----GSESFSDFLDRLSA------------------LSKIADADADLLEELKADKAELEAKK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 563 PKAEDLdacnlkrrkgsfgsidhLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKL 642
Cdd:COG3883 150 AELEAK-----------------LAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAA 212
|
....*
gi 2462625326 643 RSSQA 647
Cdd:COG3883 213 AAAAA 217
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
350-745 |
9.62e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.95 E-value: 9.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 350 TQDETQKSDLENEDLKIDClqesqelNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGND------------ 417
Cdd:TIGR00618 431 KQQELQQRYAELCAAAITC-------TAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVvlarllelqeep 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 418 ---AKSVSKQYSLKVTKLEHDAEQAKVE-LIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSK 493
Cdd:TIGR00618 504 cplCGSCIHPNPARQDIDNPGPLTRRMQrGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSK 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 494 KLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLK----TGQEEGLKPKAEDLD 569
Cdd:TIGR00618 584 EDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKltalHALQLTLTQERVREH 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 570 ACNLKRRKGSFGSIDHLQKLDEQKKW----------------LDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQE 633
Cdd:TIGR00618 664 ALSIRVLPKELLASRQLALQKMQSEKeqltywkemlaqcqtlLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQ 743
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625326 634 K------------SHLENKKLRSSQALNTDsLKISTRLNLLEQELSEKNVQLQTST-------AEEKTKISEQVEVLQKE 694
Cdd:TIGR00618 744 SlkelmhqartvlKARTEAHFNNNEEVTAA-LQTGAELSHLAAEIQFFNRLREEDThllktleAEIGQEIPSDEDILNLQ 822
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 2462625326 695 KDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQ 745
Cdd:TIGR00618 823 CETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQ 873
|
|
| |
