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Conserved domains on  [gi|2462522855|ref|XP_054223609|]
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xylosyl- and glucuronyltransferase LARGE2 isoform X13 [Homo sapiens]

Protein Classification

glycosyltransferase family protein; glycosyltransferase family 2 protein( domain architecture ID 10157680)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein| glycosyltransferase family 2 protein catalyzes the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GT8_LARGE_C cd06431
LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in ...
66-345 0e+00

LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis; The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil motif, and two putative catalytic domains. This catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis.


:

Pssm-ID: 133053  Cd Length: 280  Bit Score: 522.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855  66 LHVAIVCAGHNSSRDVITLVKSMLFYRKNPLHLHLVTDAVARNILETLFHTWMVPAVRVSFYHADQLKPQVSWIPNKHYS 145
Cdd:cd06431     1 IHVAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHYS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 146 GLYGLMKLVLPSALPAELARVIVLDTDVTFASDISELWALFAHFSDTQAIGLVENQSDWYLGNLWKNHRPWPALGRGFNT 225
Cdd:cd06431    81 GIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGFNT 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 226 GVILLRLDRLRQAGWEQMWRLTARRELLSLPATSLADQDIFNAVIKEHPGLVQRLPCVWNVQLSDHTLAERCYSEASDLK 305
Cdd:cd06431   161 GVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQLSDHTRSEQCYRDVSDLK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 2462522855 306 VIHWNSPKKLRVKNKHVEFFRNFYLTFLEYDGNLLRRELF 345
Cdd:cd06431   241 VIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELF 280
PHA03378 super family cl33729
EBNA-3B; Provisional
423-609 2.66e-03

EBNA-3B; Provisional


The actual alignment was detected with superfamily member PHA03378:

Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.82  E-value: 2.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 423 PYTPSTSFAT------W------PWPR-PSRLTSSSVTLTSCLPILSTTTSGPPLSSWGWAAGARQHWWCRHLRPCATAS 489
Cdd:PHA03378  673 PYQPSPTGANtmlpiqWapgtmqPPPRaPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPG 752
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 490 ASPIPRWScwPCWMRAlstPSGTTSGPEATHPQTMPAGGRLRPRtvcnGRPTMNPTWWCHETvpAMILALWASAGTKWPT 569
Cdd:PHA03378  753 RARPPAAA--PGRARP---PAAAPGAPTPQPPPQAPPAPQQRPR----GAPTPQPPPQAGPT--SMQLMPRAAPGQQGPT 821
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2462522855 570 LWSWMPSSQGL--QGKPvlwSCTFPAGQASQAATAPLPHPAG 609
Cdd:PHA03378  822 KQILRQLLTGGvkRGRP---SLKKPAALERQAAAGPTPSPGS 860
 
Name Accession Description Interval E-value
GT8_LARGE_C cd06431
LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in ...
66-345 0e+00

LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis; The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil motif, and two putative catalytic domains. This catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis.


Pssm-ID: 133053  Cd Length: 280  Bit Score: 522.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855  66 LHVAIVCAGHNSSRDVITLVKSMLFYRKNPLHLHLVTDAVARNILETLFHTWMVPAVRVSFYHADQLKPQVSWIPNKHYS 145
Cdd:cd06431     1 IHVAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHYS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 146 GLYGLMKLVLPSALPAELARVIVLDTDVTFASDISELWALFAHFSDTQAIGLVENQSDWYLGNLWKNHRPWPALGRGFNT 225
Cdd:cd06431    81 GIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGFNT 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 226 GVILLRLDRLRQAGWEQMWRLTARRELLSLPATSLADQDIFNAVIKEHPGLVQRLPCVWNVQLSDHTLAERCYSEASDLK 305
Cdd:cd06431   161 GVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQLSDHTRSEQCYRDVSDLK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 2462522855 306 VIHWNSPKKLRVKNKHVEFFRNFYLTFLEYDGNLLRRELF 345
Cdd:cd06431   241 VIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELF 280
RfaJ COG1442
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope ...
83-314 8.12e-20

Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441051 [Multi-domain]  Cd Length: 301  Bit Score: 90.42  E-value: 8.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855  83 TLVKSMLFYRKN-PLHLHLVTDAV---ARNILETLFHTwmvPAVRVSFYHADQLKPQVswIP-NKHYSgLYGLMKLVLPS 157
Cdd:COG1442    22 VSIASLLENNPDrPYDFHILTDGLsdeNKERLEALAAK---YNVSIEFIDVDDELLKD--LPvSKHIS-KATYYRLLIPE 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 158 ALPAELARVIVLDTDVTFASDISELWALfaHFSDtQAIGLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLRLDRLRQ 237
Cdd:COG1442    96 LLPDDYDKVLYLDADTLVLGDLSELWDI--DLGG-NLLAAVRDGTVTGSQKKRAKRLGLPDDDGYFNSGVLLINLKKWRE 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 238 AGW-EQMWR-LTARRELLSLPatslaDQDIFNAVIKEHpglVQRLPCVWNVQ------LSDHTLAERCYSEASDLKVIHW 309
Cdd:COG1442   173 ENItEKALEfLKENPDKLKYP-----DQDILNIVLGGK---VKFLPPRYNYQyslyyeLKDKSNKKELLEARKNPVIIHY 244

                  ....*
gi 2462522855 310 NSPKK 314
Cdd:COG1442   245 TGPTK 249
Glyco_transf_8 pfam01501
Glycosyl transferase family 8; This family includes enzymes that transfer sugar residues to ...
140-314 1.31e-16

Glycosyl transferase family 8; This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase.


Pssm-ID: 279798 [Multi-domain]  Cd Length: 252  Bit Score: 79.67  E-value: 1.31e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 140 PNKHYSGLYGLMKLVLPSALPaELARVIVLDTDVTFASDISELWAL-FahfsDTQAIGLVENQSDWYlgNLWKNHRPWPA 218
Cdd:pfam01501  77 RSPKYWSLLNYLRLYLPDLFP-KLDKILYLDADIVVQGDLSPLWDIdL----GGKVLAAVEDNYFQR--YPNFSEPIILE 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 219 LG----RGFNTGVILLRLDRLRQAGweqmwrLTAR-RELLSLPATS----LADQDIFNAVIKehpGLVQRLPCVWNVQLS 289
Cdd:pfam01501 150 NFgppaCYFNAGMLLFDLDAWRKEN------ITERyIKWLNLNENRtlwkLGDQDPLNIVFY---GKVKPLDPRWNVLGL 220
                         170       180
                  ....*....|....*....|....*.
gi 2462522855 290 DHTLAERCYSEASD-LKVIHWNSPKK 314
Cdd:pfam01501 221 GYYNKKKSLNEITEnAAVIHYNGPTK 246
PHA03378 PHA03378
EBNA-3B; Provisional
423-609 2.66e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.82  E-value: 2.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 423 PYTPSTSFAT------W------PWPR-PSRLTSSSVTLTSCLPILSTTTSGPPLSSWGWAAGARQHWWCRHLRPCATAS 489
Cdd:PHA03378  673 PYQPSPTGANtmlpiqWapgtmqPPPRaPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPG 752
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 490 ASPIPRWScwPCWMRAlstPSGTTSGPEATHPQTMPAGGRLRPRtvcnGRPTMNPTWWCHETvpAMILALWASAGTKWPT 569
Cdd:PHA03378  753 RARPPAAA--PGRARP---PAAAPGAPTPQPPPQAPPAPQQRPR----GAPTPQPPPQAGPT--SMQLMPRAAPGQQGPT 821
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2462522855 570 LWSWMPSSQGL--QGKPvlwSCTFPAGQASQAATAPLPHPAG 609
Cdd:PHA03378  822 KQILRQLLTGGvkRGRP---SLKKPAALERQAAAGPTPSPGS 860
PLN02769 PLN02769
Probable galacturonosyltransferase
123-185 8.75e-03

Probable galacturonosyltransferase


Pssm-ID: 215412 [Multi-domain]  Cd Length: 629  Bit Score: 38.91  E-value: 8.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462522855 123 RVSFYHADQLkpqvswiPNKH----YSGLYGLMKLVLPSALPaELARVIVLDTDVTFASDISELWAL 185
Cdd:PLN02769  416 RVSFRSVDNP-------SSKQmrteYLSVFSHSHFLLPEIFK-KLKKVVVLDDDVVVQRDLSFLWNL 474
 
Name Accession Description Interval E-value
GT8_LARGE_C cd06431
LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in ...
66-345 0e+00

LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis; The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil motif, and two putative catalytic domains. This catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis.


Pssm-ID: 133053  Cd Length: 280  Bit Score: 522.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855  66 LHVAIVCAGHNSSRDVITLVKSMLFYRKNPLHLHLVTDAVARNILETLFHTWMVPAVRVSFYHADQLKPQVSWIPNKHYS 145
Cdd:cd06431     1 IHVAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHYS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 146 GLYGLMKLVLPSALPAELARVIVLDTDVTFASDISELWALFAHFSDTQAIGLVENQSDWYLGNLWKNHRPWPALGRGFNT 225
Cdd:cd06431    81 GIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGFNT 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 226 GVILLRLDRLRQAGWEQMWRLTARRELLSLPATSLADQDIFNAVIKEHPGLVQRLPCVWNVQLSDHTLAERCYSEASDLK 305
Cdd:cd06431   161 GVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQLSDHTRSEQCYRDVSDLK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 2462522855 306 VIHWNSPKKLRVKNKHVEFFRNFYLTFLEYDGNLLRRELF 345
Cdd:cd06431   241 VIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELF 280
Glyco_transf_8 cd00505
Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis ...
66-318 1.44e-72

Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis; Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.


Pssm-ID: 132996 [Multi-domain]  Cd Length: 246  Bit Score: 233.10  E-value: 1.44e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855  66 LHVAIVCAGHNSSRDVITLVKSMLFYRKNPLHLHLVTDAVARNILETLFHTWMVPAVRVSFYHADQLKPQVSWiPNKHYS 145
Cdd:cd00505     1 IAIVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSE-HLKRPI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 146 GLYGLMKLVLPSALPaELARVIVLDTDVTFASDISELWALFAhfsDTQAIGLVENQSDWYLGNLWKNHRPWPALGRGFNT 225
Cdd:cd00505    80 KIVTLTKLHLPNLVP-DYDKILYVDADILVLTDIDELWDTPL---GGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNS 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 226 GVILLRLDRLRqagWEQMWRLTARRELLSLPATSLADQDIFNAVIKEHPGLVQRLPCVWNVQLSDHTLAERC-YSEASDL 304
Cdd:cd00505   156 GVFVVNLSKER---RNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQVPFIVKSLPCIWNVRLTGCYRSLNCfKAFVKNA 232
                         250
                  ....*....|....
gi 2462522855 305 KVIHWNSPKKLRVK 318
Cdd:cd00505   233 KVIHFNGPTKPWNK 246
RfaJ COG1442
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope ...
83-314 8.12e-20

Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441051 [Multi-domain]  Cd Length: 301  Bit Score: 90.42  E-value: 8.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855  83 TLVKSMLFYRKN-PLHLHLVTDAV---ARNILETLFHTwmvPAVRVSFYHADQLKPQVswIP-NKHYSgLYGLMKLVLPS 157
Cdd:COG1442    22 VSIASLLENNPDrPYDFHILTDGLsdeNKERLEALAAK---YNVSIEFIDVDDELLKD--LPvSKHIS-KATYYRLLIPE 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 158 ALPAELARVIVLDTDVTFASDISELWALfaHFSDtQAIGLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLRLDRLRQ 237
Cdd:COG1442    96 LLPDDYDKVLYLDADTLVLGDLSELWDI--DLGG-NLLAAVRDGTVTGSQKKRAKRLGLPDDDGYFNSGVLLINLKKWRE 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 238 AGW-EQMWR-LTARRELLSLPatslaDQDIFNAVIKEHpglVQRLPCVWNVQ------LSDHTLAERCYSEASDLKVIHW 309
Cdd:COG1442   173 ENItEKALEfLKENPDKLKYP-----DQDILNIVLGGK---VKFLPPRYNYQyslyyeLKDKSNKKELLEARKNPVIIHY 244

                  ....*
gi 2462522855 310 NSPKK 314
Cdd:COG1442   245 TGPTK 249
Glyco_transf_8 pfam01501
Glycosyl transferase family 8; This family includes enzymes that transfer sugar residues to ...
140-314 1.31e-16

Glycosyl transferase family 8; This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase.


Pssm-ID: 279798 [Multi-domain]  Cd Length: 252  Bit Score: 79.67  E-value: 1.31e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 140 PNKHYSGLYGLMKLVLPSALPaELARVIVLDTDVTFASDISELWAL-FahfsDTQAIGLVENQSDWYlgNLWKNHRPWPA 218
Cdd:pfam01501  77 RSPKYWSLLNYLRLYLPDLFP-KLDKILYLDADIVVQGDLSPLWDIdL----GGKVLAAVEDNYFQR--YPNFSEPIILE 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 219 LG----RGFNTGVILLRLDRLRQAGweqmwrLTAR-RELLSLPATS----LADQDIFNAVIKehpGLVQRLPCVWNVQLS 289
Cdd:pfam01501 150 NFgppaCYFNAGMLLFDLDAWRKEN------ITERyIKWLNLNENRtlwkLGDQDPLNIVFY---GKVKPLDPRWNVLGL 220
                         170       180
                  ....*....|....*....|....*.
gi 2462522855 290 DHTLAERCYSEASD-LKVIHWNSPKK 314
Cdd:pfam01501 221 GYYNKKKSLNEITEnAAVIHYNGPTK 246
GT8_A4GalT_like cd04194
A4GalT_like proteins catalyze the addition of galactose or glucose residues to the ...
83-314 8.27e-16

A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface; The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.


Pssm-ID: 133037 [Multi-domain]  Cd Length: 248  Bit Score: 77.25  E-value: 8.27e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855  83 TLVKSMLFY-RKNPLHLHLVTDAVARNILETLFHTWMVPAVRVSFYHADQLKPQVSWIPNKHYSgLYGLMKLVLPSALPa 161
Cdd:cd04194    17 VTIKSILANnSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHIS-YATYYRLLIPDLLP- 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 162 ELARVIVLDTDVTFASDISELWALfaHFSDTQAIGLVENQSDWYLGNLWKNHRpwPALGRGFNTGVILLRLDRLRQAGWE 241
Cdd:cd04194    95 DYDKVLYLDADIIVLGDLSELFDI--DLGDNLLAAVRDPFIEQEKKRKRRLGG--YDDGSYFNSGVLLINLKKWREENIT 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 242 QMWR--LTARRELLSLPatslaDQDIFNAVIKEHpglVQRLPCVWNVQLSDHTLA------ERCYSEA-SDLKVIHWNSP 312
Cdd:cd04194   171 EKLLelIKEYGGRLIYP-----DQDILNAVLKDK---ILYLPPRYNFQTGFYYLLkkkskeEQELEEArKNPVIIHYTGS 242

                  ..
gi 2462522855 313 KK 314
Cdd:cd04194   243 DK 244
GT8_like_2 cd06430
GT8_like_2 represents a subfamily of GT8 with unknown function; A subfamily of ...
66-335 6.67e-15

GT8_like_2 represents a subfamily of GT8 with unknown function; A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.


Pssm-ID: 133052  Cd Length: 304  Bit Score: 75.96  E-value: 6.67e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855  66 LHVAIVCAG--HNssrDVITLVKSMLFYRKNPLHLHLVT-DAVARNILETLfHTWMVPAVRVSFYhadQLKPQVswIPNK 142
Cdd:cd06430     1 MHLAVVACGerLE---ETLTMLKSAIVFSQKPLRFHIFAeDQLKQSFKEKL-DDWPELIDRKFNY---TLHPIT--FPSG 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 143 HYSGLYGLMK------LVLPSALPaELARVIVLDTDVTFASDISELWALFAHFSDTQAIGLVENQSDWYLGnlWKNHRPW 216
Cdd:cd06430    72 NAAEWKKLFKpcaaqrLFLPSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIG--WYNRFAR 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 217 -PALGR-GFNTGVILLRLDRLRQA-----------GWEQMWRLTARRELLSLpatSLADQDIFNAVIKEHPGLVQRLPCV 283
Cdd:cd06430   149 hPYYGKtGVNSGVMLMNLTRMRRKyfkndmtpvglRWEEILMPLYKKYKLKI---TWGDQDLINIIFHHNPEMLYVFPCH 225
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2462522855 284 WNVQlSDHTLAERCYSEASD--LKVIHWNspkKLRVKNKHVEFFRNFYLTFLEY 335
Cdd:cd06430   226 WNYR-PDHCMYGSNCKAAEEegVFILHGN---RGVYHSDKQPAFRAVYEAIREY 275
GT8_like_1 cd06429
GT8_like_1 represents a subfamily of GT8 with unknown function; A subfamily of ...
96-314 1.23e-04

GT8_like_1 represents a subfamily of GT8 with unknown function; A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.


Pssm-ID: 133051 [Multi-domain]  Cd Length: 257  Bit Score: 43.92  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855  96 LHLHLVTDA-----------------VARNILETLFHTW----MVPAVRVSFYHADQLKPQVSwipNKHYSGLYGLMKLV 154
Cdd:cd06429    30 LVFHIVTDNqnygamrswfdlnplkiATVKVLNFDDFKLlgkvKVDSLMQLESEADTSNLKQR---KPEYISLLNFARFY 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 155 LPSALPaELARVIVLDTDVTFASDISELWALfahfsdtqaiglvenqsdwylgNLWKNHRpwPALGRGFNTGVILLRLDR 234
Cdd:cd06429   107 LPELFP-KLEKVIYLDDDVVVQKDLTELWNT----------------------DLGGGVA--GAVETSWNPGVNVVNLTE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 235 LRQAG----WEQMWRLTARRE-----LLSLPATSLADQdifnavikehpGLVQRLPCVWNVQ-LSDHTLAERCYSEASdl 304
Cdd:cd06429   162 WRRQNvtetYEKWMELNQEEEvtlwkLITLPPGLIVFY-----------GLTSPLDPSWHVRgLGYNYGIRPQDIKAA-- 228
                         250
                  ....*....|
gi 2462522855 305 KVIHWNSPKK 314
Cdd:cd06429   229 AVLHFNGNMK 238
PHA03378 PHA03378
EBNA-3B; Provisional
423-609 2.66e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.82  E-value: 2.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 423 PYTPSTSFAT------W------PWPR-PSRLTSSSVTLTSCLPILSTTTSGPPLSSWGWAAGARQHWWCRHLRPCATAS 489
Cdd:PHA03378  673 PYQPSPTGANtmlpiqWapgtmqPPPRaPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPG 752
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462522855 490 ASPIPRWScwPCWMRAlstPSGTTSGPEATHPQTMPAGGRLRPRtvcnGRPTMNPTWWCHETvpAMILALWASAGTKWPT 569
Cdd:PHA03378  753 RARPPAAA--PGRARP---PAAAPGAPTPQPPPQAPPAPQQRPR----GAPTPQPPPQAGPT--SMQLMPRAAPGQQGPT 821
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2462522855 570 LWSWMPSSQGL--QGKPvlwSCTFPAGQASQAATAPLPHPAG 609
Cdd:PHA03378  822 KQILRQLLTGGvkRGRP---SLKKPAALERQAAAGPTPSPGS 860
PLN02769 PLN02769
Probable galacturonosyltransferase
123-185 8.75e-03

Probable galacturonosyltransferase


Pssm-ID: 215412 [Multi-domain]  Cd Length: 629  Bit Score: 38.91  E-value: 8.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462522855 123 RVSFYHADQLkpqvswiPNKH----YSGLYGLMKLVLPSALPaELARVIVLDTDVTFASDISELWAL 185
Cdd:PLN02769  416 RVSFRSVDNP-------SSKQmrteYLSVFSHSHFLLPEIFK-KLKKVVVLDDDVVVQRDLSFLWNL 474
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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