|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
17-281 |
3.94e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 3.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 17 EVEISTIEKQRKELQLLIGELKDR----DKELNDMVAVHQQQLLSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKK 92
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKAlaelRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 93 VKALESNQMECQTALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQA-------REQALTTMIKL 165
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaanlreRLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 166 KDKDIIEAVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQ 245
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915
|
250 260 270
....*....|....*....|....*....|....*.
gi 2462534955 246 EKSCLHDELlftVEREKRKDELLNIAKSKQERTNSE 281
Cdd:TIGR02168 916 ELEELREKL---AQLELRLEGLEVRIDNLQERLSEE 948
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
23-297 |
5.81e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 5.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 23 IEKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALESNQME 102
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 103 CQTALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKLKDKDIIEAVNHIADCSG 182
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 183 KFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLFTVEREK 262
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270
....*....|....*....|....*....|....*
gi 2462534955 263 RKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQ 297
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
24-287 |
7.30e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 7.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 24 EKQRKELQLLIGELKDRDKELNDMVAVHQQQLlswEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALESNQMEC 103
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKL---EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 104 QTALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKLKDKDIIEAVNhiadcsgk 183
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS-------- 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 184 fkmlehALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNE-----KTTENNEQREEIIRLKQEKSCLHDELLFTV 258
Cdd:TIGR02168 387 ------KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkklEEAELKELQAELEELEEELEELQEELERLE 460
|
250 260
....*....|....*....|....*....
gi 2462534955 259 EREKRKDELLNIAKSKQERTNSELHNLRQ 287
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQA 489
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
20-297 |
4.15e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 4.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 20 ISTIEKQRKEL----------QLLIGELKDRDKELndmvavhqqQLLSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSL 89
Cdd:COG1196 195 LGELERQLEPLerqaekaeryRELKEELKELEAEL---------LLLKLRELEAELEELEAELEELEAELEELEAELAEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 90 TKKVKALESNQMECQTALQKTQLQLQE-------MAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTM 162
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEEYEllaelarLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 163 IKLKDKDIIEAVNHIADCSGKFKMLEHALRDAKMAetcivkEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIR 242
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE------LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2462534955 243 LKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQ 297
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
17-276 |
3.65e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 3.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 17 EVEISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWEEDRQKvltLEERCSKLEGELHKRTEIIRSLTKKVKAL 96
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR---LEERRRELEERLEELEEELAELEEELEEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 97 ESNQMECQTALQKTQLQLQEMAQKathsslLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKLKdKDIIEAVNH 176
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAE------LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA-AQLEELEEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 177 IADcsgkfkmleHALRDAKMAEtcivkEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLF 256
Cdd:COG1196 409 EEA---------LLERLERLEE-----ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260
....*....|....*....|
gi 2462534955 257 TVEREKRKDELLNIAKSKQE 276
Cdd:COG1196 475 LEAALAELLEELAEAAARLL 494
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
17-246 |
3.83e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 17 EVEISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWEEDRQKV-----------LTLEERCSKLEGELHKRTEI 85
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELeaqieqlkeelKALREALDELRAELTLLNEE 818
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 86 IRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQALttmikl 165
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL------ 892
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 166 kDKDIIEAVNHIADCSGKFKMLEHALRDAKmaetcivKEKQDYKQKLKALKIEVNKLKEDLNEK---------------T 230
Cdd:TIGR02168 893 -RSELEELSEELRELESKRSELRRELEELR-------EKLAQLELRLEGLEVRIDNLQERLSEEysltleeaealenkiE 964
|
250
....*....|....*.
gi 2462534955 231 TENNEQREEIIRLKQE 246
Cdd:TIGR02168 965 DDEEEARRRLKRLENK 980
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
5-239 |
7.10e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 7.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 5 AAFLAGRQNIGSEVEISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQLlswEEDRQKVLTLEERCSKLEGELHKRTE 84
Cdd:COG4942 7 LALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL---AALERRIAALARRIRALEQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 85 IIRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHSSLLS----EDLEARNETLSNTLVELSAQVGQLQAREQALT 160
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSpedfLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462534955 161 TMIKLKDKDIIEAVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREE 239
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
25-282 |
2.04e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 25 KQRKELQLLIGELKDRDKELNDMVA--VHQQQLL-----SWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALE 97
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSelRRIENRLdelsqELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 98 SNQMECQTALQKTQLQLQEMAQKATHSSLLSEDLEAR------------NETLSNTLVELSAQVGQLQAREQALTTMIKL 165
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlshsripeiqaeLSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 166 KDKDIIEAVNHIADCSGKFKMLEHALRDAKmaetcivKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQ 245
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLN-------GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250 260 270
....*....|....*....|....*....|....*..
gi 2462534955 246 EKsclhDELLFTVEREKRKDELLNIAKSKQERTNSEL 282
Cdd:TIGR02169 904 KI----EELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
85-327 |
2.32e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 85 IIRSLTKKVKALESnqmECQTALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTMIK 164
Cdd:COG1196 194 ILGELERQLEPLER---QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 165 LKDKDIIEAVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLK 244
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 245 QEKSCLHDELLFTVEREKRKD-ELLNIAKSKQERTNSELHNLRQIYVKQQSDLQFLNFNVENSQELIQMYDSKMEESKAL 323
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEaELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
....
gi 2462534955 324 DSSR 327
Cdd:COG1196 431 AELE 434
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
17-284 |
5.75e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 5.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 17 EVEISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQL-LS--WEEDRQKVLTLEERCSKLE----------GELHKRT 83
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIkLSefYEEYLDELREIEKRLSRLEeeingieeriKELEEKE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 84 EIIRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHSSLLS-----------EDLEARNETLSNTLVELSAQVGQL 152
Cdd:PRK03918 338 ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTgltpeklekelEELEKAKEEIEEEISKITARIGEL 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 153 QAREQAL-TTMIKLKD-----------------KDIIEAVN-HIADCSGKFKMLEHALRDAK----------MAETCIVK 203
Cdd:PRK03918 418 KKEIKELkKAIEELKKakgkcpvcgrelteehrKELLEEYTaELKRIEKELKEIEEKERKLRkelrelekvlKKESELIK 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 204 EKQDYKQkLKALKIEVNKL-KEDLNEKTTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKdELLNIAKSKQERTNSEL 282
Cdd:PRK03918 498 LKELAEQ-LKELEEKLKKYnLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL-AELEKKLDELEEELAEL 575
|
..
gi 2462534955 283 HN 284
Cdd:PRK03918 576 LK 577
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
62-246 |
1.47e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 62 RQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALESNQMECQtALQKTQLQLQEMAQKATHSSLLSEDLEARNETlSNT 141
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-RLAEYSWDEIDVASAEREIAELEAELERLDAS-SDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 142 LVELSAQVGQLQAREQALTTMIKLKDKDIIEAVNHIADCSGKFKMLEHALRDAkmAETCIVKEKQDYKQKLKALKIE--V 219
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA--EDLARLELRALLEERFAAALGDavE 764
|
170 180 190
....*....|....*....|....*....|.
gi 2462534955 220 NKLKEDLNEK----TTENNEQREEIIRLKQE 246
Cdd:COG4913 765 RELRENLEERidalRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
19-240 |
1.71e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 19 EISTIEKQRKELQLLIGELKDRDKELNDM---------VAVHQQQLLSWEEDRQKVL-------TLEERCSKLEGELHKR 82
Cdd:COG4913 625 ELAEAEERLEALEAELDALQERREALQRLaeyswdeidVASAEREIAELEAELERLDassddlaALEEQLEELEAELEEL 704
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 83 TEIIRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKAthSSLLSEDLEARNETLSNTLVElSAQVGQLQAREQALTTM 162
Cdd:COG4913 705 EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA--RLELRALLEERFAAALGDAVE-RELRENLEERIDALRAR 781
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 163 IKLKDKDIIEAVNHIADcsgKFKMLEHALRDAkmaetciVKEKQDYKQKLKALKIE-----VNKLKEDLNEKTTEN---- 233
Cdd:COG4913 782 LNRAEEELERAMRAFNR---EWPAETADLDAD-------LESLPEYLALLDRLEEDglpeyEERFKELLNENSIEFvadl 851
|
250
....*....|.
gi 2462534955 234 ----NEQREEI 240
Cdd:COG4913 852 lsklRRAIREI 862
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
29-336 |
2.78e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 29 ELQLLIGELKDRDKELNdmvAVHQQQLLSWEEDRQKVLTLEErcskLEGELHKRTEIIRSLTKKVKALESnqmECQTALQ 108
Cdd:pfam15921 378 QLQKLLADLHKREKELS---LEKEQNKRLWDRDTGNSITIDH----LRRELDDRNMEVQRLEALLKAMKS---ECQGQME 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 109 KTQLQLQEMAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQA---LTTMIKLKDKdIIEAVNhiadcsGKFK 185
Cdd:pfam15921 448 RQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTvsdLTASLQEKER-AIEATN------AEIT 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 186 MLEHALrDAKMAETCIVKEKQDYkqkLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQ--------------EKSCLH 251
Cdd:pfam15921 521 KLRSRV-DLKLQELQHLKNEGDH---LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlvgqhgrtagamqvEKAQLE 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 252 DELlftverEKRKDEL--LNIAKSKQERTNSELHnlrqiyvKQQSDLQFLNFNVEN--SQELIQMYDSKMEESKALDSSR 327
Cdd:pfam15921 597 KEI------NDRRLELqeFKILKDKKDAKIRELE-------ARVSDLELEKVKLVNagSERLRAVKDIKQERDQLLNEVK 663
|
....*....
gi 2462534955 328 DmCLSDLEN 336
Cdd:pfam15921 664 T-SRNELNS 671
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
19-161 |
2.79e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 19 EISTIEKQRKELQLLIGELKDRDKELNDMVAvHQQQLLSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALES 98
Cdd:COG4717 96 ELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE 174
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534955 99 NQMECQTALQKTQL----QLQEMAQKAthssllsEDLEARNETLSNTLVELSAQVGQLQAREQALTT 161
Cdd:COG4717 175 LQEELEELLEQLSLateeELQDLAEEL-------EELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
20-239 |
5.60e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 20 ISTIEKQRKEL--------QLLIGELKDRDKELNDMvavhQQQLLSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTK 91
Cdd:COG4717 48 LERLEKEADELfkpqgrkpELNLKELKELEEELKEA----EEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 92 KVKALESNQmecqtALQKTQLQLQEMAQKAthssllsEDLEARNETLSNTLVELSAQVGQLQAREQALTTmikLKDKDII 171
Cdd:COG4717 124 LLQLLPLYQ-----ELEALEAELAELPERL-------EELEERLEELRELEEELEELEAELAELQEELEE---LLEQLSL 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462534955 172 EAVNHIADCSGKFKMLEhalrdakmaetcivKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREE 239
Cdd:COG4717 189 ATEEELQDLAEELEELQ--------------QRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
86-281 |
7.53e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 86 IRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHsslLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKL 165
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNE---LQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 166 -----KDKDIIEAV---NHIADCSGKFKMLEHALRDAKMaetcIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQR 237
Cdd:COG3883 95 lyrsgGSVSYLDVLlgsESFSDFLDRLSALSKIADADAD----LLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462534955 238 EEIIRLKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNSE 281
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
104-322 |
1.34e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 104 QTALQKTQLQLQEMAQKatHSSLlseDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKLKDKDIIEAVNHIADcsgk 183
Cdd:COG3206 188 RKELEEAEAALEEFRQK--NGLV---DLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE---- 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 184 fkmlehALRDAKMaetcivkekQDYKQKLKALKIEVnklkEDLNEKTTENNEQ----REEIIRLKQEKSCLHDELLFTVE 259
Cdd:COG3206 259 ------LLQSPVI---------QQLRAQLAELEAEL----AELSARYTPNHPDvialRAQIAALRAQLQQEAQRILASLE 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534955 260 REkrkdelLNIAKSKQERTNSELHNLRQ---IYVKQQSDLQFLNFNVENSQELIQMYDSKMEESKA 322
Cdd:COG3206 320 AE------LEALQAREASLQAQLAQLEArlaELPELEAELRRLEREVEVARELYESLLQRLEEARL 379
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
20-236 |
1.49e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 20 ISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWE------EDRQKVLTLEERCSKLEGELhkrtEIIRSLTKKV 93
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeysWDEIDVASAEREIAELEAEL----ERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 94 KALESNQMECQTALQKTQLQLqemaqkathssllsEDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKLKDKDIIEA 173
Cdd:COG4913 688 AALEEQLEELEAELEELEEEL--------------DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534955 174 vnhiadcsgkfkMLEHALRDAKMAETcivkeKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQ 236
Cdd:COG4913 754 ------------RFAAALGDAVEREL-----RENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
23-255 |
3.88e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 3.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 23 IEKQRKELQLL--IGELKDRDKELNDMVAVHQQQL--LSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALES 98
Cdd:COG4913 244 LEDAREQIELLepIRELAERYAAARERLAELEYLRaaLRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 99 NQMECQTALQktQLQLQEMAQkathsslLSEDLEARNETLsntlvelsAQVGQLQAREQALTTMIKLKDKDIIEAvnhia 178
Cdd:COG4913 324 ELDELEAQIR--GNGGDRLEQ-------LEREIERLEREL--------EERERRRARLEALLAALGLPLPASAEE----- 381
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534955 179 dcsgkFKMLEHALRDAKMAETCIVKEKQDYKQKLKAlkiEVNKLKEDLNEKttenneqREEIIRLKQEKSCLHDELL 255
Cdd:COG4913 382 -----FAALRAEAAALLEALEEELEALEEALAEAEA---ALRDLRRELREL-------EAEIASLERRKSNIPARLL 443
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
19-365 |
4.68e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 19 EISTIEKQRKEL----QLLIGELKDRDKELNDM------VAVHQQQLL--------SWEEDRQKVLTLEERCSKLEGELH 80
Cdd:pfam05483 423 EKKQFEKIAEELkgkeQELIFLLQAREKEIHDLeiqltaIKTSEEHYLkevedlktELEKEKLKNIELTAHCDKLLLENK 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 81 KRTEIIRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHsslLSEDLEARNETLSNTLVELSAQVGQLQAREQALT 160
Cdd:pfam05483 503 ELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMN---LRDELESVREEFIQKGDEVKCKLDKSEENARSIE 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 161 TMIKLKDKDIIEAVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEI 240
Cdd:pfam05483 580 YEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNY 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 241 IRLKQEKSCLHDELLFTVEREK-RKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQFLnfnVENSQELIQMYDSKMEE 319
Cdd:pfam05483 660 QKEIEDKKISEEKLLEEVEKAKaIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKI---IEERDSELGLYKNKEQE 736
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 2462534955 320 SKALDSSRDMCLSDLENN----HPKVDIKREKNQKSLFKDQKFEAMLVQQ 365
Cdd:pfam05483 737 QSSAKAALEIELSNIKAEllslKKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
8-300 |
5.26e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 5.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 8 LAGRQNIGSEV-----EISTIEKQRKELQLLIGELKD-------RDKELNDMVAVHQQQLLSWEEDrqkvltLEERCSKL 75
Cdd:pfam12128 233 IAGIMKIRPEFtklqqEFNTLESAELRLSHLHFGYKSdetliasRQEERQETSAELNQLLRTLDDQ------WKEKRDEL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 76 EGELHKRTEIIRSLTKKVKALESNqmecqtALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNtlveLSAQVGQLQAR 155
Cdd:pfam12128 307 NGELSAADAAVAKDRSELEALEDQ------HGAFLDADIETAAADQEQLPSWQSELENLEERLKA----LTGKHQDVTAK 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 156 EQALTTMIKLKDKDIIEAVNH------------IADCSGKFKMLEHALRDA-KMAETCIVKEKQDYKQKLKALKIEVN-- 220
Cdd:pfam12128 377 YNRRRSKIKEQNNRDIAGIKDklakireardrqLAVAEDDLQALESELREQlEAGKLEFNEEEYRLKSRLGELKLRLNqa 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 221 ----KLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNSELHNLR-QIYVKQQSD 295
Cdd:pfam12128 457 tatpELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELElQLFPQAGTL 536
|
....*
gi 2462534955 296 LQFLN 300
Cdd:pfam12128 537 LHFLR 541
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
35-458 |
5.45e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 5.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 35 GELKDRDKELNDmvavhqqqlLSWEEDRQKVL-TLEERCSKLEGEL--------HKRTEIIRSLTKKVKALESnQMECQT 105
Cdd:COG5022 810 KEYRSYLACIIK---------LQKTIKREKKLrETEEVEFSLKAEVliqkfgrsLKAKKRFSLLKKETIYLQS-AQRVEL 879
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 106 ALQKTQlQLQEMAQKATHSSLLSEDLEARNETLSNTLVelSAQVGQLQAREQALTTMIKLKDK-DIIEAvnhiadcsgkf 184
Cdd:COG5022 880 AERQLQ-ELKIDVKSISSLKLVNLELESEIIELKKSLS--SDLIENLEFKTELIARLKKLLNNiDLEEG----------- 945
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 185 kmlehalRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLFTVEREKRK 264
Cdd:COG5022 946 -------PSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQL 1018
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 265 DELlniakskqERTNSELHNLRQIYVKQQSDLQFLNF--NVENSQELIQMYDSKMEESKALDSSRDMCLSDLENNHPKVD 342
Cdd:COG5022 1019 KEL--------PVEVAELQSASKIISSESTELSILKPlqKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTE 1090
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 343 IK----REKNQKSLFKDQKFEAMLVQQNRSDKSSCDECKEKKQqidtvFGEKSVITLSSIFTKDLVEKHNLPWSLGGKTQ 418
Cdd:COG5022 1091 NLlktiNVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISK-----FLSQLVNTLEPVFQKLSVLQLELDGLFWEANL 1165
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 2462534955 419 IEPENKITLCKIHTKSPKCHGTGVQNEGKQPSETPTLSDE 458
Cdd:COG5022 1166 EALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNE 1205
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
19-229 |
5.46e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 19 EISTIEKQrkelqllIGELKDRDKELNDMVAVHQQQLlswEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALES 98
Cdd:TIGR02168 296 EISRLEQQ-------KQILRERLANLERQLEELEAQL---EELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 99 NQMECQTALQKTQLQLQEMAQKAThssllseDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKLKDKDIIEAvnHIA 178
Cdd:TIGR02168 366 ELEELESRLEELEEQLETLRSKVA-------QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELK 436
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462534955 179 DCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEK 229
Cdd:TIGR02168 437 ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-319 |
7.74e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 7.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 142 LVELSAQVG--QLQAR--EQALTTMIKLKDKDIIEAVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKI 217
Cdd:TIGR02168 195 LNELERQLKslERQAEkaERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 218 EVNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQ 297
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180
....*....|....*....|..
gi 2462534955 298 FLNFNVENSQELIQMYDSKMEE 319
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEE 376
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
84-349 |
7.82e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 7.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 84 EIIRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHSSLLSEDLE---ARNETLSNTLVELSAQVGQLQAREQALT 160
Cdd:pfam05483 363 ELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKkilAEDEKLLDEKKQFEKIAEELKGKEQELI 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 161 TMIKLKDKDIIEavnhiadcsgkfkmLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEI 240
Cdd:pfam05483 443 FLLQAREKEIHD--------------LEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEA 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 241 IRLKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQF-LNFNVENSQELIQMYDSKMEE 319
Cdd:pfam05483 509 SDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCkLDKSEENARSIEYEVLKKEKQ 588
|
250 260 270
....*....|....*....|....*....|
gi 2462534955 320 SKALDSSRDMCLSDLENNHPKVDIKREKNQ 349
Cdd:pfam05483 589 MKILENKCNNLKKQIENKNKNIEELHQENK 618
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
23-370 |
1.05e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 23 IEKQRKELQLLIGELKDRDKELNDMVAVhqqqllsWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKV--------- 93
Cdd:pfam05483 235 INDKEKQVSLLLIQITEKENKMKDLTFL-------LEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELedikmslqr 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 94 -----KALESN-QMECQTALQKTQLQLQEMAQ----KATHSSL----------LSEDLEARNETLSNTLVELSAQVGQLQ 153
Cdd:pfam05483 308 smstqKALEEDlQIATKTICQLTEEKEAQMEElnkaKAAHSFVvtefeattcsLEELLRTEQQRLEKNEDQLKIITMELQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 154 AREQALTTMIKLKDKDIIE-------------------AVNHIA--------DCSGKFKMLEHALRDAKMAETCIVKEKQ 206
Cdd:pfam05483 388 KKSSELEEMTKFKNNKEVEleelkkilaedeklldekkQFEKIAeelkgkeqELIFLLQAREKEIHDLEIQLTAIKTSEE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 207 DYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELlftvereKRKDELLNIAKSKQERTNSELHNLR 286
Cdd:pfam05483 468 HYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLEL-------KKHQEDIINCKKQEERMLKQIENLE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 287 QIYVKQQSDLQFLNfnvensQELIQMYDS---KMEESKALDSSRDMCLSDLENNHPKVDIKREKNQKSLFKDQKFEAMLV 363
Cdd:pfam05483 541 EKEMNLRDELESVR------EEFIQKGDEvkcKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELH 614
|
....*..
gi 2462534955 364 QQNRSDK 370
Cdd:pfam05483 615 QENKALK 621
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
19-339 |
1.33e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 19 EISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWEEDRQkvlTLEERCSKLEGELHKRTEIIRSLTKKVKALES 98
Cdd:pfam07888 95 KHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIK---TLTQRVLERETELERMKERAKKAGAQRKEEEA 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 99 NQMECQTALQKTQLQLQEM-----------AQKATHSSLLSEDL-------------EARNETLsntLVELSAQVGQLQA 154
Cdd:pfam07888 172 ERKQLQAKLQQTEEELRSLskefqelrnslAQRDTQVLQLQDTIttltqklttahrkEAENEAL---LEELRSLQERLNA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 155 REQA-------LTTMIKLKDKDIIE---AVNHIADCSGKFKMLEHALRDAK----MAETCIVKEKQDYKQKLKALKIEVN 220
Cdd:pfam07888 249 SERKveglgeeLSSMAAQRDRTQAElhqARLQAAQLTLQLADASLALREGRarwaQERETLQQSAEADKDRIEKLSAELQ 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 221 KLKEDLNEKTTENNEQREEiirLKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNSELHNLRQiYVKQQsdlqfln 300
Cdd:pfam07888 329 RLEERLQEERMEREKLEVE---LGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLE-YIRQL------- 397
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2462534955 301 fnvenSQELIQMYDSKMEESKALDSSR-DMCLSDLENNHP 339
Cdd:pfam07888 398 -----EQRLETVADAKWSEAALTSTERpDSPLSDSEDENP 432
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
19-319 |
1.37e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 19 EISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWEEDRQKVL------------------TLEERCSKLEGEL- 79
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaglddadaeavearreELEDRDEELRDRLe 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 80 HKRTEI------IRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNT------------ 141
Cdd:PRK02224 332 ECRVAAqahneeAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapvdlgnae 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 142 --LVELSAQVGQLQAREQALTTMIKLKDKDIIEA---------------------VNHIADCSGKFKMLEHALRDAKmAE 198
Cdd:PRK02224 412 dfLEELREERDELREREAELEATLRTARERVEEAealleagkcpecgqpvegsphVETIEEDRERVEELEAELEDLE-EE 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 199 TCIVKEKQDYKQKLKALKIEVNKLKED-------LNEKTTENNEQREEIIRLKQEKSCLHDEllftvEREKRKDEllNIA 271
Cdd:PRK02224 491 VEEVEERLERAEDLVEAEDRIERLEERredleelIAERRETIEEKRERAEELRERAAELEAE-----AEEKREAA--AEA 563
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2462534955 272 KSKQERTNSELHNLRQIYVKQQSDLQFLNfNVENSQELIQMYDSKMEE 319
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIER 610
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1-357 |
1.55e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 1 MNPPAAFLAGRQNIGSEVEISTIEKQRKELQLLIGELKDRDKELNDMvavhQQQLlswEEDRQKVLTLEERCSKLEGELH 80
Cdd:COG4372 18 LRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQL----EEEL---EQARSELEQLEEELEELNEQLQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 81 KRTEIIRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQAL- 159
Cdd:COG4372 91 AAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALe 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 160 TTMIKLKDKDIIEAVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREE 239
Cdd:COG4372 171 QELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEE 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 240 IIRLKQEKSclhDELLFTVEREKRKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQFLNFNVENSQELIQMYDSKMEE 319
Cdd:COG4372 251 LLEEVILKE---IEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKK 327
|
330 340 350
....*....|....*....|....*....|....*...
gi 2462534955 320 SKALDSSRDMCLSDLENNHPKVDIKREKNQKSLFKDQK 357
Cdd:COG4372 328 LELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEA 365
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
42-322 |
1.65e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 41.66 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 42 KELNDMVAVHQQQLLSWEEDRQKVL-TLEERCSKLEGELH----KRTEIIRSLTKKVKALE--SNQMECQTALQKTQLQL 114
Cdd:pfam07111 140 RELEEIQRLHQEQLSSLTQAHEEALsSLTSKAEGLEKSLNsletKRAGEAKQLAEAQKEAEllRKQLSKTQEELEAQVTL 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 115 QEMAQKATHSSLLSE----DLEARNETLSNTL-------VELSAQVGQLQAREQALTTMIKLKDKDIIEAVNHIADCSGK 183
Cdd:pfam07111 220 VESLRKYVGEQVPPEvhsqTWELERQELLDTMqhlqedrADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPE 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 184 F----KMLEHALRDAKMAETCIVKEKQ-DYKQKLKALKIEVNKLKedlnEKTTENNEQREEIIRLKQEKSClhdelLFTV 258
Cdd:pfam07111 300 FpkkcRSLLNRWREKVFALMVQLKAQDlEHRDSVKQLRGQVAELQ----EQVTSQSQEQAILQRALQDKAA-----EVEV 370
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462534955 259 EREKRKDELLNIAKSKQERTNSElhnlrQIYVKQQSDLQFLNFNVENSQELIQMYDSKMEESKA 322
Cdd:pfam07111 371 ERMSAKGLQMELSRAQEARRRQQ-----QQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVA 429
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
23-158 |
1.71e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 23 IEKQRKELQlliGELKDRDKELNDMvavhQQQLLsweedrQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALESNQME 102
Cdd:PRK12704 66 IHKLRNEFE---KELRERRNELQKL----EKRLL------QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534955 103 CQTALQKTQLQLQEMAQkathsslLSEDlEARNETLSNTLVELSAQVGQL------QAREQA 158
Cdd:PRK12704 133 LEELIEEQLQELERISG-------LTAE-EAKEILLEKVEEEARHEAAVLikeieeEAKEEA 186
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
9-297 |
2.20e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 9 AGRQNIGSEVEISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQllsweedRQKVLTLEERCSKLEgELHKRTEIIR- 87
Cdd:PRK04863 818 AFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQ-------RSQLEQAKEGLSALN-RLLPRLNLLAd 889
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 88 -SLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHSSLLSEDlEARNETLSNTLVELSAQVGQLQAREQALTTMIKLK 166
Cdd:PRK04863 890 eTLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSD-PEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRR 968
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 167 DK-DIIEAVNHIADCSG-------KFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKI-------EVNKLKEDLNEKTT 231
Cdd:PRK04863 969 AHfSYEDAAEMLAKNSDlneklrqRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSsydakrqMLQELKQELQDLGV 1048
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534955 232 ENNEQREEIIRLKQEKscLHDELlftVEREKRKDELLniakSKQERTNSELHNLRQIYVKQQSDLQ 297
Cdd:PRK04863 1049 PADSGAEERARARRDE--LHARL---SANRSRRNQLE----KQLTFCEAEMDNLTKKLRKLERDYH 1105
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
59-328 |
2.49e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 59 EEDRQKVLTLEERCSKLEGElhkrteiIRSLTKKVKALESnqmecqtaLQKTQLQLQEMAQKATHSSLLSEDLEARNETL 138
Cdd:PRK02224 471 EEDRERVEELEAELEDLEEE-------VEEVEERLERAED--------LVEAEDRIERLEERREDLEELIAERRETIEEK 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 139 SNTLVELSAQVGQLQA-----REQALTTMIKLKdkdiiEAVNHIADCSGKFKMLEHAL-RDAKMAEtcIVKEKQDYKQKL 212
Cdd:PRK02224 536 RERAEELRERAAELEAeaeekREAAAEAEEEAE-----EAREEVAELNSKLAELKERIeSLERIRT--LLAAIADAEDEI 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 213 KALkievNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDellniAKSKQERTNSELHNLRQiyvkQ 292
Cdd:PRK02224 609 ERL----REKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKER-----AEEYLEQVEEKLDELRE----E 675
|
250 260 270
....*....|....*....|....*....|....*.
gi 2462534955 293 QSDLQFLNFNVENSqelIQMYDSKMEESKALDSSRD 328
Cdd:PRK02224 676 RDDLQAEIGAVENE---LEELEELRERREALENRVE 708
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
41-244 |
2.88e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 41 DKELNDMVAVHQQQLLSWEEDRQKVLTLEERCSKLEGElhkRTEIIRSLTKKVKALESNQMECQTALQKTQLQLQEMAQK 120
Cdd:pfam15921 596 EKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELE---KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSL 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 121 ATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAR-EQALTTMIKLKDKD-------------IIEAVNHIADCSGKFKM 186
Cdd:pfam15921 673 SEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSElEQTRNTLKSMEGSDghamkvamgmqkqITAKRGQIDALQSKIQF 752
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462534955 187 LEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLK 244
Cdd:pfam15921 753 LEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
24-284 |
3.76e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 24 EKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWEEDRQkvlTLEERCSKLEGELHKRTEIIRSLTKKVKALESNQMEC 103
Cdd:pfam01576 116 EAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERK---LLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 104 QTALQKTQLQLQEMAQkathsslLSEDLEARNETLSNTLVELSAQV----GQLQAREQALTTMIKLKD----------KD 169
Cdd:pfam01576 193 EERLKKEEKGRQELEK-------AKRKLEGESTDLQEQIAELQAQIaelrAQLAKKEEELQAALARLEeetaqknnalKK 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 170 IIEAVNHIADcsgkfkmLEHALRDAKMAETCIVKEKQDYKQKLKALKI---------------------EVNKLKEDLNE 228
Cdd:pfam01576 266 IRELEAQISE-------LQEDLESERAARNKAEKQRRDLGEELEALKTeledtldttaaqqelrskreqEVTELKKALEE 338
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534955 229 KTTENNEQREEiirLKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNSELHN 284
Cdd:pfam01576 339 ETRSHEAQLQE---MRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQA 391
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
27-383 |
4.11e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 27 RKELQLLIGELKDRDKELNDMVAVHQQQLLSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALESNQMECQTA 106
Cdd:TIGR00606 534 RTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNE 613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 107 LQKTQLQLQEMAQKaTHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTMI-KLKDKDI-------------IE 172
Cdd:TIGR00606 614 LESKEEQLSSYEDK-LFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFItQLTDENQsccpvcqrvfqteAE 692
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 173 AVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQEKScLHD 252
Cdd:TIGR00606 693 LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIE-EQE 771
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 253 ELLFTVEREKRKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQF---------LNFNVENSQELIQMYDSKMEESKAL 323
Cdd:TIGR00606 772 TLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGsdldrtvqqVNQEKQEKQHELDTVVSKIELNRKL 851
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 324 DSSRDMCLSDLENNHPKVDIKREKNQKSLFKDQKFEAMLVQQNRSDKSSCDECKEKKQQI 383
Cdd:TIGR00606 852 IQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQD 911
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
17-392 |
5.07e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 17 EVEISTIEKQRKELQLLIGELKDRDKElndmvavHQQQLLSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKAL 96
Cdd:TIGR04523 186 QKNIDKIKNKLLKLELLLSNLKKKIQK-------NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 97 ESNQMECQTALQKTQLQLQEMAQKATH-----SSLLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKLKDKDII 171
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNKKIKElekqlNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIIS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 172 EAVNHIADCSGKFKMLE-------HALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLK 244
Cdd:TIGR04523 339 QLNEQISQLKKELTNSEsensekqRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534955 245 QEKSCL---HDELLFTVEREKRKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQFL-NFNVENSQELIQMYDSKMEES 320
Cdd:TIGR04523 419 QEKELLekeIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSiNKIKQNLEQKQKELKSKEKEL 498
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534955 321 KALDSSRdmclSDLENnhpKVDIKREKNQKSLFKDQKFEAMLVQQNRSDKSSCDECKEKKQQIDTVFGEKSV 392
Cdd:TIGR04523 499 KKLNEEK----KELEE---KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEI 563
|
|
| |
