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Conserved domains on  [gi|2462536570|ref|XP_054230256|]
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sister chromatid cohesion protein PDS5 homolog B isoform X12 [Homo sapiens]

Protein Classification

sister chromatid cohesion protein PDS5( domain architecture ID 20799355)

sister chromatid cohesion protein PDS5 is essential for the establishment and maintenance of sister chromatid cohesion at centromere proximal and distal regions during S phase; also required for chromosomal condensation.

Gene Ontology:  GO:0007064|GO:0008156|GO:0051301

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
44-1114 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


:

Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1071.83  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570   44 EEMVRRLKMVVKTFMDMDQDSEEEKELyLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTsPDKLKDIFM 123
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKSL-DPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYT-DDQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  124 FITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEG 203
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  204 DTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSH 283
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  284 LLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKD-SELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDL 362
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  363 AKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVN-DHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAG 441
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVsEKLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  442 -KDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLLRHQ 520
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  521 VKDLLDLIKQ------PKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVleDDEKIRKQLEVLVSPTCSCKQAEGC 594
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  595 VREITKKLGnpkQPTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVptdqairaglELLKVLSFT 674
Cdd:pfam20168  557 RKELLKRLG---DSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  675 HPISFHSAEtfESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSaLLPVLHHKSKKGPPRQAKYAIHCIHAIF-S 753
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAgD 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  754 SKETQFAQIFEPLHKSLDPSNlEHLITPLVTIGHIALLAPDQFaAPLKSLVATFIVKDLLMNDRLPGK--KTTKLWVPDE 831
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLAS-PNLLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  832 EVSPETMVKIQAIKMMVRWLLGMKN--NHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPC 909
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  910 YHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNINVRREylk 989
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  990 qhaavsEKLLSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKDVKECLWFVLEiLMAKNENNShaFIRKMVENIKQTKDAQ 1069
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLD-LVATEENIS--LLYYLAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 2462536570 1070 GPDdakMNEKLYTVCDVAMNII--MSKSTTYSL-ESPKDPVLPARFFT 1114
Cdd:pfam20168 1007 DPD---SSENLYVLSDLAQLIIkrLAKQKGWSLqTYPGKVKLPSDLFK 1051
 
Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
44-1114 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1071.83  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570   44 EEMVRRLKMVVKTFMDMDQDSEEEKELyLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTsPDKLKDIFM 123
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKSL-DPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYT-DDQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  124 FITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEG 203
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  204 DTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSH 283
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  284 LLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKD-SELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDL 362
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  363 AKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVN-DHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAG 441
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVsEKLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  442 -KDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLLRHQ 520
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  521 VKDLLDLIKQ------PKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVleDDEKIRKQLEVLVSPTCSCKQAEGC 594
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  595 VREITKKLGnpkQPTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVptdqairaglELLKVLSFT 674
Cdd:pfam20168  557 RKELLKRLG---DSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  675 HPISFHSAEtfESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSaLLPVLHHKSKKGPPRQAKYAIHCIHAIF-S 753
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAgD 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  754 SKETQFAQIFEPLHKSLDPSNlEHLITPLVTIGHIALLAPDQFaAPLKSLVATFIVKDLLMNDRLPGK--KTTKLWVPDE 831
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLAS-PNLLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  832 EVSPETMVKIQAIKMMVRWLLGMKN--NHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPC 909
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  910 YHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNINVRREylk 989
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  990 qhaavsEKLLSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKDVKECLWFVLEiLMAKNENNShaFIRKMVENIKQTKDAQ 1069
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLD-LVATEENIS--LLYYLAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 2462536570 1070 GPDdakMNEKLYTVCDVAMNII--MSKSTTYSL-ESPKDPVLPARFFT 1114
Cdd:pfam20168 1007 DPD---SSENLYVLSDLAQLIIkrLAKQKGWSLqTYPGKVKLPSDLFK 1051
PDS5 cd19953
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ...
46-676 0e+00

Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.


Pssm-ID: 410996 [Multi-domain]  Cd Length: 630  Bit Score: 718.54  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570   46 MVRRLKMVVKTFMDMDQDSEEEKELyLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTsPDKLKDIFMFI 125
Cdd:cd19953      1 LLKRLKALHEELSELDQDEVDLESL-EPVAKELVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYT-DDQLKDIFKLF 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  126 TRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDT 205
Cdd:cd19953     79 ISQLKGLLDPDSPYFSQYFYLLESLAEVKSIVLLLDLPDADELILELFKTFFDLVRDDHPKNVENLMLDILVELIDESES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  206 VSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSI-----SDLSEHVFDLILELYNI 280
Cdd:cd19953    159 VPQEVLDIILAQFLKKNKSENPPAYRLAVEVCERCSDKLQRYVTQFFSEVLVDASTEEdseedSEELEKAHELIYELWRI 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  281 DSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSE-LASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNH 359
Cdd:cd19953    239 APELLLSVIPQLEEELKADDVDVRLLATKLLGKMFAEKGSAgFAQTYPSLWKEFLGRFNDKSPEVRLAWVESAKHILLNH 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  360 PDLAKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILL-VNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQS 438
Cdd:cd19953    319 PDLAEDILEALKKRLLDPDEKVRLAAVKAICDLAYEDLLHkVPEELLSTLAERLRDKKASVRKEALQGLARLYKVAYGEI 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  439 AAG-KDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLL 517
Cdd:cd19953    399 EEGdETAIKQFGWIPSKILHLYYINDPEINLLVERVLFEYLLPLSLDDEERVKRLLLLFSSLDDKAKKAFFAILKRQQRL 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  518 RHQVKDLLDLIKQPKT------DASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVleDDEKIRKQLEVLVSPTCSCKQA 591
Cdd:cd19953    479 RKELQKYLDLCEKYNGgviedeEEVEKKLEKLIKWLSASFPDPLKAEEDLQKFAKL--NDRRIYKLLKTCLDPETDYKTV 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  592 EGCVREITKKLGNPKqpTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSidgtaddedEGVPTDQAIRAGLELLKVL 671
Cdd:cd19953    557 RKARKELLKRLGDPS--KASLLETLKILLYRSSPLIFNKSNVPALLKILKSS---------DGSDNEKLASAALELLLEI 625

                   ....*
gi 2462536570  672 SFTHP 676
Cdd:cd19953    626 SKVFP 630
 
Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
44-1114 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1071.83  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570   44 EEMVRRLKMVVKTFMDMDQDSEEEKELyLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTsPDKLKDIFM 123
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKSL-DPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYT-DDQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  124 FITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEG 203
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  204 DTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSH 283
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  284 LLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKD-SELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDL 362
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  363 AKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVN-DHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAG 441
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVsEKLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  442 -KDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLLRHQ 520
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  521 VKDLLDLIKQ------PKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVleDDEKIRKQLEVLVSPTCSCKQAEGC 594
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  595 VREITKKLGnpkQPTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVptdqairaglELLKVLSFT 674
Cdd:pfam20168  557 RKELLKRLG---DSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  675 HPISFHSAEtfESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSaLLPVLHHKSKKGPPRQAKYAIHCIHAIF-S 753
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAgD 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  754 SKETQFAQIFEPLHKSLDPSNlEHLITPLVTIGHIALLAPDQFaAPLKSLVATFIVKDLLMNDRLPGK--KTTKLWVPDE 831
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLAS-PNLLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  832 EVSPETMVKIQAIKMMVRWLLGMKN--NHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPC 909
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  910 YHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNINVRREylk 989
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  990 qhaavsEKLLSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKDVKECLWFVLEiLMAKNENNShaFIRKMVENIKQTKDAQ 1069
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLD-LVATEENIS--LLYYLAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 2462536570 1070 GPDdakMNEKLYTVCDVAMNII--MSKSTTYSL-ESPKDPVLPARFFT 1114
Cdd:pfam20168 1007 DPD---SSENLYVLSDLAQLIIkrLAKQKGWSLqTYPGKVKLPSDLFK 1051
PDS5 cd19953
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ...
46-676 0e+00

Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.


Pssm-ID: 410996 [Multi-domain]  Cd Length: 630  Bit Score: 718.54  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570   46 MVRRLKMVVKTFMDMDQDSEEEKELyLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTsPDKLKDIFMFI 125
Cdd:cd19953      1 LLKRLKALHEELSELDQDEVDLESL-EPVAKELVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYT-DDQLKDIFKLF 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  126 TRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDT 205
Cdd:cd19953     79 ISQLKGLLDPDSPYFSQYFYLLESLAEVKSIVLLLDLPDADELILELFKTFFDLVRDDHPKNVENLMLDILVELIDESES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  206 VSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSI-----SDLSEHVFDLILELYNI 280
Cdd:cd19953    159 VPQEVLDIILAQFLKKNKSENPPAYRLAVEVCERCSDKLQRYVTQFFSEVLVDASTEEdseedSEELEKAHELIYELWRI 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  281 DSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSE-LASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNH 359
Cdd:cd19953    239 APELLLSVIPQLEEELKADDVDVRLLATKLLGKMFAEKGSAgFAQTYPSLWKEFLGRFNDKSPEVRLAWVESAKHILLNH 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  360 PDLAKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILL-VNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQS 438
Cdd:cd19953    319 PDLAEDILEALKKRLLDPDEKVRLAAVKAICDLAYEDLLHkVPEELLSTLAERLRDKKASVRKEALQGLARLYKVAYGEI 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  439 AAG-KDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLL 517
Cdd:cd19953    399 EEGdETAIKQFGWIPSKILHLYYINDPEINLLVERVLFEYLLPLSLDDEERVKRLLLLFSSLDDKAKKAFFAILKRQQRL 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  518 RHQVKDLLDLIKQPKT------DASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVleDDEKIRKQLEVLVSPTCSCKQA 591
Cdd:cd19953    479 RKELQKYLDLCEKYNGgviedeEEVEKKLEKLIKWLSASFPDPLKAEEDLQKFAKL--NDRRIYKLLKTCLDPETDYKTV 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462536570  592 EGCVREITKKLGNPKqpTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSidgtaddedEGVPTDQAIRAGLELLKVL 671
Cdd:cd19953    557 RKARKELLKRLGDPS--KASLLETLKILLYRSSPLIFNKSNVPALLKILKSS---------DGSDNEKLASAALELLLEI 625

                   ....*
gi 2462536570  672 SFTHP 676
Cdd:cd19953    626 SKVFP 630
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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