|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
430-688 |
6.11e-32 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 125.23 E-value: 6.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 430 KAVTYLRQKDYNQAVEILKVLEKKDNRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDY 509
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 510 EKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVS 589
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 590 VIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWqLMV 669
Cdd:COG2956 173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LAL 251
|
250
....*....|....*....
gi 2462538105 670 ASCFRRSGNYQKALDTYKD 688
Cdd:COG2956 252 ADLLERKEGLEAALALLER 270
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
468-700 |
1.70e-30 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 121.37 E-value: 1.70e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 468 LYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEAL 547
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 548 DCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPC 627
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462538105 628 NIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVEFL 700
Cdd:COG2956 177 CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
489-655 |
5.60e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 113.18 E-value: 5.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 489 DRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIA 568
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 569 NIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKA 648
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
|
....*..
gi 2462538105 649 IQYFERA 655
Cdd:COG0457 164 LELLEKL 170
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
461-665 |
4.14e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 107.79 E-value: 4.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 461 AATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKL 540
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 541 NRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYY-- 618
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLek 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462538105 619 -YESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKW 665
Cdd:COG0457 170 lEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
520-687 |
4.74e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 101.62 E-value: 4.74e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 520 LRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLS 599
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 600 KLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNY 679
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
....*...
gi 2462538105 680 QKALDTYK 687
Cdd:COG0457 161 EEALELLE 168
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
531-698 |
3.99e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 94.03 E-value: 3.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 531 YNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGD 610
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 611 KSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTH 690
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
....*...
gi 2462538105 691 RKFPENVE 698
Cdd:COG2956 172 KLDPDCAR 179
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
460-682 |
4.33e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.59 E-value: 4.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 460 AAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEK 539
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 540 LNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYY 619
Cdd:COG3914 91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462538105 620 ESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKA 682
Cdd:COG3914 171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
458-594 |
2.14e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 82.16 E-value: 2.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 458 KSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTY 537
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462538105 538 EKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTD 594
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
505-707 |
8.88e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 87.74 E-value: 8.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 505 ANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWL 584
Cdd:COG3914 90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 585 MQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVK 664
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSE 249
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462538105 665 WQ-LMVASCFRRSGNYQKALdtykdtHRKFPENVEFLCQQCPVP 707
Cdd:COG3914 250 LSpFALLYLPDDDPAELLAL------ARAWAQLVAAAAAPELPP 287
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
494-626 |
3.72e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 78.70 E-value: 3.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 494 AALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYEL 573
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2462538105 574 MENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFP 626
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
561-696 |
1.25e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.15 E-value: 1.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 561 AEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYI 640
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462538105 641 DTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPEN 696
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
210-586 |
1.29e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.54 E-value: 1.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 210 FNLASQYSVNEMYAEALNTYQVIVKNKmfSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGV 289
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELD--PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD-----RAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 290 TFIQAGQYSDAINSYEHIMSMAPNLkagynlticyfaigdrekmKKAFQKLITVpleidedkyispsddphtnlvteaik 369
Cdd:COG2956 85 DYLKAGLLDRAEELLEKLLELDPDD-------------------AEALRLLAEI-------------------------- 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 370 ndhlrqmererkamaekyimtsakliapvietsfaagydwcvevvkasqyvelandleinkavtYLRQKDYNQAVEILKV 449
Cdd:COG2956 120 ----------------------------------------------------------------YEQEGDWEKAIEVLER 135
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 450 LEKKDNRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEA 529
Cdd:COG2956 136 LLKLGPE-NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462538105 530 LYNIGLTYEKLNRLDEALDcFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQ 586
Cdd:COG2956 215 LPRLAELYEKLGDPEEALE-LLRKALELDPSDDLLLALADLLERKEGLEAALALLER 270
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
511-618 |
2.89e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.81 E-value: 2.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 511 KAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSV 590
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*...
gi 2462538105 591 IPTDPQVLSKLGELYDREGDKSQAFQYY 618
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAW 108
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
222-700 |
3.07e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.21 E-value: 3.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 222 YAEALNTYQVIVKNKMFSNAGILkmNMGNIYLKQRNYSKAIKFYRMALDQVPSVNKQMRIKIMqnigVTFiQAGQYSDAI 301
Cdd:TIGR02917 209 IELALAAYRKAIALRPNNIAVLL--ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL----VDF-QKKNYEDAR 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 302 NSYEHIMSMAPN-LKAGYNLTICYFAIGDREKmkkAFQklitvpleidedkyispsddpHTNLVTEAIKNDHLrqmerer 380
Cdd:TIGR02917 282 ETLQDALKSAPEyLPALLLAGASEYQLGNLEQ---AYQ---------------------YLNQILKYAPNSHQ------- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 381 kamaekyimtsAKLIApvietsfaagydwcvevvkasqyvelandleinkAVTYLRQKDYNQAVEILKVLEKKDNRvkSA 460
Cdd:TIGR02917 331 -----------ARRLL----------------------------------ASIQLRLGRVDEAIATLSPALGLDPD--DP 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 461 AATNLSALYYMGK-DFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEK 539
Cdd:TIGR02917 364 AALSLLGEAYLALgDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 540 LNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYY 619
Cdd:TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 620 ESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKAL---DTYKDTHRKFPEN 696
Cdd:TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALailNEAADAAPDSPEA 603
|
....
gi 2462538105 697 VEFL 700
Cdd:TIGR02917 604 WLML 607
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
212-697 |
3.94e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 82.82 E-value: 3.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 212 LASQYSVNEMYAEALNTYQVIVKNKMfSNAGILKMnMGNIYLKQRNYSKAIKFyrmaLDQVPSVNKQMRIKIMQnIGVTF 291
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDP-DDPAALSL-LGEAYLALGDFEKAAEY----LAKATELDPENAAARTQ-LGISK 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 292 IQAGQYSDAINSYEHIMSMAPNLK-AGYNLTICYFAIGDREKMKKAFQKLITvpleidedkyiSPSDDPHTNLVTEAIkn 370
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGrADLLLILSYLRSGQFDKALAAAKKLEK-----------KQPDNASLHNLLGAI-- 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 371 dhlRQMERErKAMAEKYIMTSAKlIAPVIETSFA--AGYDWCVE-VVKASQYVE--LANDLEINKAVT-----YLRQKDY 440
Cdd:TIGR02917 475 ---YLGKGD-LAKAREAFEKALS-IEPDFFPAAAnlARIDIQEGnPDDAIQRFEkvLTIDPKNLRAILalaglYLRTGNE 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 441 NQAVEILKVLEKKDNRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEAL 520
Cdd:TIGR02917 550 EEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 521 RNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSK 600
Cdd:TIGR02917 629 ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 601 LGELYDREGDKSQAFQYYYESYRYFPCNIEVIEwLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQ 680
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787
|
490
....*....|....*..
gi 2462538105 681 KALDTYKDTHRKFPENV 697
Cdd:TIGR02917 788 KAIKHYQTVVKKAPDNA 804
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
429-586 |
7.14e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 77.74 E-value: 7.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 429 NKAVTYLRQKDYNQAVEIL-KVLEKKDNRVksAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANG 507
Cdd:COG0457 47 NLGLAYLRLGRYEEALADYeQALELDPDDA--EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462538105 508 DYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQ 586
Cdd:COG0457 125 RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
565-702 |
7.96e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 75.15 E-value: 7.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 565 YQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQF 644
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462538105 645 WEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVEFLCQ 702
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE 149
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
524-662 |
2.93e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.22 E-value: 2.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 524 SSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGE 603
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462538105 604 LYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQ 662
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
493-705 |
7.37e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.95 E-value: 7.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 493 PAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAI---------LRNSAEV 563
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAgeaaaaaaaLLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 564 LYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQ 643
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462538105 644 FWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVEFLCQQCP 705
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLF 222
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
248-696 |
1.85e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.88 E-value: 1.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 248 MGNIYLKQRNYSKAIKFYRMALDQVPSVNKQM----RIKIMQnigvtfiqaGQYSDAINSYEHIMSMAPNLKAGYN--LT 321
Cdd:TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLGYPKNQVLpllaRAYLLQ---------GKFQQVLDELPGKTLLDDEGAAELLalRG 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 322 ICYFAIGDREKMKKAFQKlitvPLEIDEDKyispsddphtnlvTEAikndhlrQMERERKAMAEKYIMTSAKLIAPVIET 401
Cdd:TIGR02917 133 LAYLGLGQLELAQKSYEQ----ALAIDPRS-------------LYA-------KLGLAQLALAENRFDEARALIDEVLTA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 402 SFAAGYDWCV--EVVKASQYVELANDleinkavtylrqkDYNQAVEilkvLEKKDNRVKSAAATNLSALyymgKDFAQAS 479
Cdd:TIGR02917 189 DPGNVDALLLkgDLLLSLGNIELALA-------------AYRKAIA----LRPNNIAVLLALATILIEA----GEFEEAE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 480 SYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRN 559
Cdd:TIGR02917 248 KHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 560 SAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYY 639
Cdd:TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462538105 640 IDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPEN 696
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN 464
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
206-341 |
4.58e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.57 E-value: 4.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 206 YSVLFNLASQYSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSVnkqmrIKIMQ 285
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALE--LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-----AEALN 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462538105 286 NIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLI 341
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPdDAEALYNLGLALLELGRYDEAIEAYERAL 137
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
504-592 |
4.98e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.50 E-value: 4.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 504 FANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDcFLKLHAILRNSAEVLYQIANIYELMENPSQAIEW 583
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
....*....
gi 2462538105 584 LMQVVSVIP 592
Cdd:COG3063 82 LERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
579-698 |
9.89e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.72 E-value: 9.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 579 QAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLI 658
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2462538105 659 QPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVE 698
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
474-626 |
2.04e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.67 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 474 DFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKL 553
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462538105 554 HAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFP 626
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
156-340 |
3.94e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.17 E-value: 3.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 156 ELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVT-TPENinldltYSVLFNLASQYSVNEMYAEALNTYQVIVK 234
Cdd:COG3914 67 AAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAlNPDN------AEALFNLGNLLLALGRLEEALAALRRALA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 235 NKMfSNAGILkMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-N 313
Cdd:COG3914 141 LNP-DFAEAY-LNLGEALRRLGRLEEAIAALRRALELDPD-----NAEALNNLGNALQDLGRLEEAIAAYRRALELDPdN 213
|
170 180
....*....|....*....|....*..
gi 2462538105 314 LKAGYNLTICYFAIGDREKMKKAFQKL 340
Cdd:COG3914 214 ADAHSNLLFALRQACDWEVYDRFEELL 240
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
416-556 |
4.57e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.51 E-value: 4.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 416 ASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDNRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAA 495
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462538105 496 LTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAI 556
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
485-596 |
5.54e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 5.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 485 AVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVL 564
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
|
90 100 110
....*....|....*....|....*....|..
gi 2462538105 565 YQIANIYELMENPSQAIEWLMQVVSVIPTDPQ 596
Cdd:COG4235 89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
207-341 |
7.49e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 7.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 207 SVLFNLASQYSVNEMYAEALNTYQVIVKNKMfSNAGILKMnMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQN 286
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDP-DNPEAFAL-LGEILLQLGDLDEAIVLLHEALELDPD-----EPEARLN 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462538105 287 IGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLI 341
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPeHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
464-562 |
2.81e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.48 E-value: 2.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 464 NLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRL 543
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
90
....*....|....*....
gi 2462538105 544 DEALDCFLKLHAILRNSAE 562
Cdd:COG4235 102 AEAIAAWQKLLALLPADAP 120
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
208-341 |
4.05e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.79 E-value: 4.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 208 VLFNLASQYSVNEMYAEALNTYQVIVKNKmFSNAGILkMNMGNIYLKQRNYSKAIKFYRMALDQVPSVnkqmrIKIMQNI 287
Cdd:COG0457 44 ALYNLGLAYLRLGRYEEALADYEQALELD-PDDAEAL-NNLGLALQALGRYEEALEDYDKALELDPDD-----AEALYNL 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2462538105 288 GVTFIQAGQYSDAINSYEHIMSMAPNL-KAGYNLTICYFAIGDREKMKKAFQKLI 341
Cdd:COG0457 117 GLALLELGRYDEAIEAYERALELDPDDaDALYNLGIALEKLGRYEEALELLEKLE 171
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
205-523 |
5.72e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.90 E-value: 5.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 205 TYSVLFNLASQYSVNEMYAEALNTYQVIVKNKmfSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIM 284
Cdd:COG2956 41 TVEAHLALGNLYRRRGEYDRAIRIHQKLLERD--PDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPD-----DAEAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 285 QNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLITVpleidedkyispsdDPHtnl 363
Cdd:COG2956 114 RLLAEIYEQEGDWEKAIEVLERLLKLGPeNAHAYCELAELYLEQGDYDEAIEALEKALKL--------------DPD--- 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 364 vteaikndhlrqmererkamaekyimtsakliapvietsfaagydwCVEVvkasqYVELANdleinkavTYLRQKDYNQA 443
Cdd:COG2956 177 ----------------------------------------------CARA-----LLLLAE--------LYLEQGDYEEA 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 444 VEILKVLEKKDNRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRyNPAALTNKGNTVFANGDYEKAAEFYKEALRND 523
Cdd:COG2956 198 IAALERALEQDPD-YLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
468-556 |
1.19e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.56 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 468 LYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFyKEALRNDSSCTEALYNIGLTYEKLNRLDEAL 547
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*....
gi 2462538105 548 DCFLKLHAI 556
Cdd:COG3063 80 AYLERALEL 88
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
453-655 |
1.74e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.39 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 453 KDNRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNP---AALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEA 529
Cdd:COG4785 30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPdlaQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 530 LYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGeLYDREG 609
Cdd:COG4785 110 YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY-LAERKL 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462538105 610 DKSQAFQYYYEsyryfpcnieviEWLGAYYIDTQFwEKAIQYFERA 655
Cdd:COG4785 189 DPEKALALLLE------------DWATAYLLQGDT-EEARELFKLA 221
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
528-660 |
4.59e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.74 E-value: 4.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 528 EALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDR 607
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2462538105 608 EGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQP 660
Cdd:COG5010 101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
504-597 |
4.70e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 54.61 E-value: 4.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 504 FANGDYEKAAEFYKEALR---NDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNS---AEVLYQIANIYELMENP 577
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDY 83
|
90 100
....*....|....*....|
gi 2462538105 578 SQAIEWLMQVVSVIPTDPQV 597
Cdd:COG1729 84 DKARATLEELIKKYPDSEAA 103
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
596-700 |
6.99e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.81 E-value: 6.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 596 QVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRR 675
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100
....*....|....*....|....*
gi 2462538105 676 SGNYQKALDTYKDTHRKFPENVEFL 700
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAY 109
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
537-626 |
1.11e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 537 YEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEwLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQ 616
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 2462538105 617 YYYESYRYFP 626
Cdd:COG3063 81 YLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
246-341 |
1.44e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.86 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 246 MNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICY 324
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPD-----NADALLDLAEALLAAGDTEEAEELLERALALDPdNPEALYLLGLAA 95
|
90
....*....|....*..
gi 2462538105 325 FAIGDREKMKKAFQKLI 341
Cdd:COG4235 96 FQQGDYAEAIAAWQKLL 112
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
592-700 |
2.34e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 55.40 E-value: 2.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 592 PTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVAS 671
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100
....*....|....*....|....*....
gi 2462538105 672 CFRRSGNYQKALDTYKDTHRKFPENVEFL 700
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEAL 113
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
431-523 |
5.68e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 5.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 431 AVTYLRQKDYNQAVEIL-KVLEKKDNRVksAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDY 509
Cdd:COG4235 24 GRAYLRLGRYDEALAAYeKALRLDPDNA--DALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
90
....*....|....
gi 2462538105 510 EKAAEFYKEALRND 523
Cdd:COG4235 102 AEAIAAWQKLLALL 115
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
433-618 |
1.27e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 54.15 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 433 TYLRQKDYNQAVEILKVLeKKDNRVKSAAATNLSALYYMGKdFAQASSYAD--IAV-----NSDRYNPAALTNKGNTVFA 505
Cdd:COG3071 128 AYRQLGDWEELLELLPAL-RKHKALSAEEAQALERRAYLGL-LRQAARDAEalKALwkalpRAERRDPELAAAYARALIA 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 506 NGDYEKAAEFYKEALRNDSSctEALYNiglTYEKLNRLD-----EALDCFLKLHAilrNSAEVLYQIANIYELMENPSQA 580
Cdd:COG3071 206 LGDHDEAERLLREALKRQWD--PRLVR---LYGRLQGGDpakqlKRAEKWLKKHP---NDPDLLLALGRLCLRNQLWGKA 277
|
170 180 190
....*....|....*....|....*....|....*...
gi 2462538105 581 IEWLMQVVSVIPtDPQVLSKLGELYDREGDKSQAFQYY 618
Cdd:COG3071 278 REYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHY 314
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
469-553 |
1.42e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 50.38 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 469 YYMGKDFAQASSYADIAVN---SDRYNPAALTNKGNTVFANGDYEKAAEFYKEALR---NDSSCTEALYNIGLTYEKLNR 542
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELGD 82
|
90
....*....|.
gi 2462538105 543 LDEALDCFLKL 553
Cdd:COG1729 83 YDKARATLEEL 93
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
252-341 |
3.78e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.22 E-value: 3.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 252 YLKQRNYSKAIKFYRMALDQVPsvNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPN----LKAGYNLTICYFAI 327
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYP--NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkaPDALLKLGLSYLEL 80
|
90
....*....|....
gi 2462538105 328 GDREKMKKAFQKLI 341
Cdd:COG1729 81 GDYDKARATLEELI 94
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
570-660 |
4.52e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.24 E-value: 4.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 570 IYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQyYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAI 649
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 2462538105 650 QYFERASLIQP 660
Cdd:COG3063 80 AYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
371-523 |
4.77e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.96 E-value: 4.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 371 DHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEIL-KV 449
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLeQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462538105 450 LEKKDNrvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRND 523
Cdd:COG5010 81 LQLDPN--NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
542-694 |
5.24e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.96 E-value: 5.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 542 RLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYES 621
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462538105 622 YRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFP 694
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
434-687 |
6.74e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 51.83 E-value: 6.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 434 YLRQKDYNQAVEILKVLEKKDNRvkSAAATNLSA-LYYMGKDFAQASSYADIAVNSDRYNPAALTnkgntvfangDYEKA 512
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPR--HPQVLRLLLqAYRQLGDWEELLELLPALRKHKALSAEEAQ----------ALERR 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 513 AefYKEALRNDSSCTEALYNIgltyekLNRLDEALdcflklhailRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIP 592
Cdd:COG3071 163 A--YLGLLRQAARDAEALKAL------WKALPRAE----------RRDPELAAAYARALIALGDHDEAERLLREALKRQW 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 593 tDPQVLSKLGELydREGDKSQAfqyyyesyryfpcnIEVIE-WLGAY-------------YIDTQFWEKAIQYFERASLI 658
Cdd:COG3071 225 -DPRLVRLYGRL--QGGDPAKQ--------------LKRAEkWLKKHpndpdlllalgrlCLRNQLWGKAREYLEAALAL 287
|
250 260
....*....|....*....|....*....
gi 2462538105 659 QPTQVKWQLMvASCFRRSGNYQKALDTYK 687
Cdd:COG3071 288 RPSAEAYAEL-ARLLEQLGDPEEAAEHYR 315
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
434-525 |
9.40e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 9.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 434 YLRQKDYNQAVEIL-KVLEKKDNRvkSAAATNLSALYYMGKDFAQASSYaDIAVNSDRYNPAALTNKGNTVFANGDYEKA 512
Cdd:COG3063 2 YLKLGDLEEAEEYYeKALELDPDN--ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|...
gi 2462538105 513 AEFYKEALRNDSS 525
Cdd:COG3063 79 LAYLERALELDPS 91
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
494-559 |
1.87e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.23 E-value: 1.87e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462538105 494 AALTNKGNTVFANGDYEKAAEFYKEALR-------NDSSCT-EALYNIGLTYEKLNRLDEALDCFLKLHAILRN 559
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarrllgPDHPLTaTTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
251-341 |
2.11e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.32 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 251 IYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAInSYEHIMSMAP-NLKAGYNLTICYFAIGD 329
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD-----NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPnNAEALLNLAELLLELGD 74
|
90
....*....|..
gi 2462538105 330 REKMKKAFQKLI 341
Cdd:COG3063 75 YDEALAYLERAL 86
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
250-341 |
3.16e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.65 E-value: 3.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 250 NIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIG 328
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPN-----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPdNPNAYSNLAALLLSLG 136
|
90
....*....|...
gi 2462538105 329 DREKMKKAFQKLI 341
Cdd:COG5010 137 QDDEAKAALQRAL 149
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
529-590 |
4.99e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 44.69 E-value: 4.99e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 529 ALYNIGLTYEKLNRLDEALDCFLKLHAILR--------NSAEVLYQIANIYELMENPSQAIEWLMQVVSV 590
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
401-618 |
6.79e-06 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 48.00 E-value: 6.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 401 TSFAAGYDWCVEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDNRVKSAAATNLSALYYMG----KDFA 476
Cdd:COG0790 5 AAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGrgvpKDYE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 477 QASSYADIAVNSDryNPAALTNKGNtVFANG-----DYEKAAEFYKEALRNDSscTEALYNIGLTYEK----LNRLDEAL 547
Cdd:COG0790 85 KALEWFEKAAEQG--DAEAQYNLGL-MYEEGlgvpqDYAKALEWYEKAAEQGD--ADAQYNLGLLYLNgegvPKDPAKAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462538105 548 DCFLKlhAILRNSAEVLYQIANIYELME----NPSQAIEWLMQVVSVipTDPQVLSKLGELYDR----EGDKSQAFQYY 618
Cdd:COG0790 160 EWYRK--AAEQGDADAQYNLGVLYENGRgvpkDPAKALEWYRKAAEQ--GDADAQYNLGRLYLNgegvEKDLEKALRWL 234
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
249-341 |
8.40e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.22 E-value: 8.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 249 GNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAI 327
Cdd:COG3914 85 ALLLQALGRYEEALALYRRALALNPD-----NAEALFNLGNLLLALGRLEEALAALRRALALNPdFAEAYLNLGEALRRL 159
|
90
....*....|....
gi 2462538105 328 GDREKMKKAFQKLI 341
Cdd:COG3914 160 GRLEEAIAALRRAL 173
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
208-313 |
1.31e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.57 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 208 VLFNLASQYSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNI 287
Cdd:COG4783 40 AFALLGEILLQLGDLDEAIVLLHEALE--LDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE-----HPEAYLRL 112
|
90 100
....*....|....*....|....*.
gi 2462538105 288 GVTFIQAGQYSDAINSYEHIMSMAPN 313
Cdd:COG4783 113 ARAYRALGRPDEAIAALEKALELDPD 138
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
604-695 |
1.72e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.01 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 604 LYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQyFERASLIQPTQVKWQLMVASCFRRSGNYQKAL 683
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2462538105 684 DTYKDTHRKFPE 695
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
537-626 |
1.91e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 537 YEKLNRLDEALDCFLKLHAILRNS---AEVLYQIANIYELMENPSQAIEWLMQVVSVIPTD---PQVLSKLGELYDREGD 610
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82
|
90
....*....|....*.
gi 2462538105 611 KSQAFQYYYESYRYFP 626
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
243-313 |
1.93e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 1.93e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462538105 243 ILKMNMGNIYLKQRNYSKAIKFYRMALD---QVPSVNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPN 313
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
505-647 |
1.96e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 45.43 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 505 ANGDYEKAAEFYKEALR-----NDSSctEALYNIGLTYEKLNRLDEALDcflklhailrnsaevLYQIAniyeLMENPSQ 579
Cdd:PRK02603 47 ADGEYAEALENYEEALKleedpNDRS--YILYNMGIIYASNGEHDKALE---------------YYHQA----LELNPKQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 580 aiewlmqvvsviptdPQVLSKLGELYDREGDKS--------------QAFQYYYESYRYFPCNieviewlgayYIDTQFW 645
Cdd:PRK02603 106 ---------------PSALNNIAVIYHKRGEKAeeagdqdeaealfdKAAEYWKQAIRLAPNN----------YIEAQNW 160
|
..
gi 2462538105 646 EK 647
Cdd:PRK02603 161 LK 162
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
434-522 |
3.35e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.44 E-value: 3.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 434 YLRQKDYNQAVEILKVLEKK--DNRVKSAAATNLSALYYMGKDFAQASSYADIAVN---SDRYNPAALTNKGNTVFANGD 508
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELGD 82
|
90
....*....|....
gi 2462538105 509 YEKAAEFYKEALRN 522
Cdd:COG1729 83 YDKARATLEELIKK 96
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
428-700 |
4.94e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.62 E-value: 4.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 428 INKAVTYLRQKDYNQAVEILK-VLEKKDNrvksaaatNLSALYYMGKDFAQASSYADIAVNSDR-----YNPAALtnkgN 501
Cdd:TIGR02917 26 IEAAKSYLQKNKYKAAIIQLKnALQKDPN--------DAEARFLLGKIYLALGDYAAAEKELRKalslgYPKNQV----L 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 502 TVFA-----NGDYEKA-AEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELME 575
Cdd:TIGR02917 94 PLLArayllQGKFQQVlDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 576 NPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERA 655
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL 253
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2462538105 656 SLIQPTQVK---WQLMVAscFRRsGNYQKALDTYKDTHRKFPENVEFL 700
Cdd:TIGR02917 254 LKKAPNSPLahyLKALVD--FQK-KNYEDARETLQDALKSAPEYLPAL 298
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
417-543 |
7.55e-05 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 44.46 E-value: 7.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 417 SQYVELANdLEINKAvtYLRQKDYNQAVEILK-VLEK-KDNRVKSAAATNLSALYYMGKDFAQASSYADiAVNSDRYNPA 494
Cdd:COG2976 86 TAYAALAA-LLLAKA--AVDAGDLDKAAAQLQwVLDNaKDPALKALARLRLARVLLAQKKYDEALATLD-AVKPEAFAAL 161
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2462538105 495 ALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLtyeKLNRL 543
Cdd:COG2976 162 YAELRGDILLAQGDKAEARAAYQKALAALPEDAPLRQLLQM---KLDDL 207
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
429-589 |
8.38e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.52 E-value: 8.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 429 NKAVTYLRQKDYNQAVEILKVLEKKDNRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGD 508
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQALELDPD-LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 509 YEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRlDEALdcflklhailrnsAEVLYQIANIYELMENPSQAIEWLMQVV 588
Cdd:COG4785 157 YELAIADLEKALELDPNDPERALWLYLAERKLDP-EKAL-------------ALLLEDWATAYLLQGDTEEARELFKLAL 222
|
.
gi 2462538105 589 S 589
Cdd:COG4785 223 A 223
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
168-546 |
1.16e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.46 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 168 GDLKLALEKAKDAgrkervlvrQREQVTTPENINLdltysvlfnLASQYSVNEMYAEALNTYQVIVKNKMFSNAGILKMn 247
Cdd:TIGR02917 581 GQLKKALAILNEA---------ADAAPDSPEAWLM---------LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL- 641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 248 mGNIYLKQRNYSKAIKFYRMALDQVPSvNKQMRIKIMQnigvTFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTI-CYFA 326
Cdd:TIGR02917 642 -ADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ----LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGdLYLR 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 327 IGDREKMKKAFQKLITvpleidedkyISPSDDPHTNLvteaikNDHLRQMERERKAMAekyimtsakliapVIETSFAag 406
Cdd:TIGR02917 716 QKDYPAAIQAYRKALK----------RAPSSQNAIKL------HRALLASGNTAEAVK-------------TLEAWLK-- 764
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 407 ydwcvevvkasqyvELAND--LEINKAVTYLRQKDYNQAVEILKVLEKK--DNrvkSAAATNLSALYYMGKDfAQASSYA 482
Cdd:TIGR02917 765 --------------THPNDavLRTALAELYLAQKDYDKAIKHYQTVVKKapDN---AVVLNNLAWLYLELKD-PRALEYA 826
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462538105 483 DIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEA 546
Cdd:TIGR02917 827 ERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
500-540 |
1.38e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.76 E-value: 1.38e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2462538105 500 GNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKL 540
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
412-614 |
1.81e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 44.41 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 412 EVVKASQYVELAND--LEInkavtYLRQKDYNQAVEI---LKVLEKKDNRVKSA------AATNLSAlyymgKDFAQASS 480
Cdd:PRK11788 132 QLVDEGDFAEGALQqlLEI-----YQQEKDWQKAIDVaerLEKLGGDSLRVEIAhfycelAQQALAR-----GDLDAARA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 481 YADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRND----SSCTEALYNIgltYEKLNRLDEALDcFLKLHAI 556
Cdd:PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDpeylSEVLPKLMEC---YQALGDEAEGLE-FLRRALE 277
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462538105 557 LRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTdPQVLSKLGELYDREGDKSQA 614
Cdd:PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRA 334
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
434-700 |
1.84e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.07 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 434 YLRQKDYNQAVEILKVLEKKDNRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAA 513
Cdd:TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEAR 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 514 EFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPT 593
Cdd:TIGR02917 180 ALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 594 DPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCF 673
Cdd:TIGR02917 260 SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339
|
250 260
....*....|....*....|....*..
gi 2462538105 674 RRSGNYQKALDTYKDTHRKFPENVEFL 700
Cdd:TIGR02917 340 LRLGRVDEAIATLSPALGLDPDDPAAL 366
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
506-570 |
1.85e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 39.87 E-value: 1.85e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462538105 506 NGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANI 570
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
479-571 |
2.31e-04 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 43.33 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 479 SSYADIAVNSDrynPAALTNKGNTVFANGDYEKAAEFYKEALRN--DSSCTE-ALYNIGLTYEKLNRLDEALDC---FLK 552
Cdd:COG4105 21 SSFKKALKSWD---AEELYEEAKEALEKGDYEKAIKLFEELEPRypGSPYAEqAQLMLAYAYYKQGDYEEAIAAadrFIK 97
|
90
....*....|....*....
gi 2462538105 553 LHAILRNSAEVLYQIANIY 571
Cdd:COG4105 98 LYPNSPNADYAYYLRGLSY 116
|
|
| SNAP |
pfam14938 |
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ... |
238-329 |
2.49e-04 |
|
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.
Pssm-ID: 405606 [Multi-domain] Cd Length: 273 Bit Score: 43.33 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 238 FSNAGILKMNMGNIYLKQR-NYSKAIKFYRMALD-----QVPSVNKQMRIKIMQnigvTFIQAGQYSDAINSYEHI--MS 309
Cdd:pfam14938 102 FRRAAKHKKEIAELYEQELgDLEKAIEAYEQAADwyegeGASALANKCYLKVAD----LSAELEDYPKAIEIYEKVakNS 177
|
90 100 110
....*....|....*....|....*....|
gi 2462538105 310 MAPNL----------KAGynltICYFAIGD 329
Cdd:pfam14938 178 LENNLlkysvkeyflKAG----LCHLAAGD 203
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
216-312 |
2.70e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 216 YSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAG 295
Cdd:COG5010 64 YNKLGDFEESLALLEQALQ--LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD-----NPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 2462538105 296 QYSDAINSYEHIMSMAP 312
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
247-274 |
2.93e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 2.93e-04
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
238-339 |
3.43e-04 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 42.95 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 238 FSNAGILKMNMGNIYLKQR-NYSKAIKFYRMA-----LDQVPSVNKQMRIKIMQnigvTFIQAGQYSDAINSYEHI--MS 309
Cdd:cd15832 107 FRQAAKHLKEIAELYENELgDLDKAIEAYEQAadyyeGEGANSLANKCYLKVAD----LAAQLEDYDKAIEIYEQVarSS 182
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2462538105 310 MAPNL----------KAGynltICYFAIGDREKMKKAFQK 339
Cdd:cd15832 183 LENNLlkysakdyflKAG----LCHLAAGDVVAAQRALEK 218
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
496-542 |
4.29e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.58 E-value: 4.29e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2462538105 496 LTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNR 542
Cdd:PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
626-700 |
4.68e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 4.68e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462538105 626 PCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVEFL 700
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
208-339 |
5.23e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.44 E-value: 5.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 208 VLFNLASQYSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNI 287
Cdd:COG3914 148 AYLNLGEALRRLGRLEEAIAALRRALE--LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD-----NADAHSNL 220
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2462538105 288 GVTFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTICYFAIGDREKMKKAFQK 339
Cdd:COG3914 221 LFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARA 272
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
246-274 |
5.28e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 5.28e-04
10 20
....*....|....*....|....*....
gi 2462538105 246 MNMGNIYLKQRNYSKAIKFYRMALDQVPS 274
Cdd:pfam00515 5 YNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
490-639 |
5.56e-04 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 43.36 E-value: 5.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 490 RYNPAALTNKGNTVFANGDYEkAAEFYKEALRNDSSCTEAL--------YNIGLTYEKLNRLDEALDcflklHAilrNSA 561
Cdd:PRK09782 539 DMSNEDLLAAANTAQAAGNGA-ARDRWLQQAEQRGLGDNALywwlhaqrYIPGQPELALNDLTRSLN-----IA---PSA 609
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462538105 562 EVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYY 639
Cdd:PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
209-313 |
6.75e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.37 E-value: 6.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 209 LFNLASQYSVNEMYAEALNTYQVIVKNKmFSNAGILkMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIG 288
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLD-PDNADAL-LDLAEALLAAGDTEEAEELLERALALDPD-----NPEALYLLG 92
|
90 100
....*....|....*....|....*
gi 2462538105 289 VTFIQAGQYSDAINSYEHIMSMAPN 313
Cdd:COG4235 93 LAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| ANAPC3 |
pfam12895 |
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ... |
481-552 |
7.76e-04 |
|
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.
Pssm-ID: 463743 [Multi-domain] Cd Length: 82 Bit Score: 38.77 E-value: 7.76e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462538105 481 YADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSScTEALYNIGLTYEKLNRLDEALDCFLK 552
Cdd:pfam12895 11 LAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSS-LGCRYLFAQCLLKLKKYDEALDALGK 81
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
528-552 |
7.90e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 7.90e-04
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
498-553 |
8.83e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 8.83e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462538105 498 NKGNTVFANGDYEKAAEFYKEALRNDSS---CTEALYNIGLTYEKLNRLDEALDCFLKL 553
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAA 60
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
208-342 |
9.22e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 9.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 208 VLFNLASQYSVNEMYAEALNTYQVIVKnKMFSNAGILKmNMGNIYLKQRNySKAIKFYRMALDQVPSVNKqmrikIMQNI 287
Cdd:TIGR02917 772 LRTALAELYLAQKDYDKAIKHYQTVVK-KAPDNAVVLN-NLAWLYLELKD-PRALEYAERALKLAPNIPA-----ILDTL 843
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462538105 288 GVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLIT 342
Cdd:TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPeAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
494-552 |
9.56e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.85 E-value: 9.56e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462538105 494 AALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLK 552
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLR 59
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
493-571 |
2.00e-03 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 40.23 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 493 PAALTNKGNTVFANGDYEKAAEFYKEALRN--DSSCTE-ALYNIGLTYEKLNRLDEAL---DCFLKLHAILRNSAEVLYQ 566
Cdd:TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRypFSPYAEqAQLDLAYAYYKSGDYAEAIaaaDRFIRLHPNHPDADYAYYL 112
|
....*
gi 2462538105 567 IANIY 571
Cdd:TIGR03302 113 RGLSN 117
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
324-685 |
2.06e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.61 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 324 YFAIGDREKMKKAFQKLitvpLEIDEDKyispsddphtnlvteaikndhlrqmererkamaekyimtsaklIAPVIETSF 403
Cdd:TIGR02917 611 QLAAGDLNKAVSSFKKL----LALQPDS-------------------------------------------ALALLLLAD 643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 404 AagydwcvevvkasqyvelandleinkavtYLRQKDYNQAVEILK-VLE-KKDNRVksaAATNLSALYYMGKDFAQASSY 481
Cdd:TIGR02917 644 A-----------------------------YAVMKNYAKAITSLKrALElKPDNTE---AQIGLAQLLLAAKRTESAKKI 691
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 482 ADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSScTEALYNIGLTYEKLNRLDEA---LDCFLKLHAilr 558
Cdd:TIGR02917 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAvktLEAWLKTHP--- 767
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 559 NSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYdREGDKSQAFQYYYESYRYFPCNIEVIEWLGAY 638
Cdd:TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLAPNIPAILDTLGWL 846
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 2462538105 639 YIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDT 685
Cdd:TIGR02917 847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
467-525 |
2.06e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 37.32 E-value: 2.06e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462538105 467 ALYYMGkDFAQASSYADIAVNSDRYNP---AALTNKGNTVFANGDYEKAAEFYKEALRNDSS 525
Cdd:pfam13432 6 AALRAG-DYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
528-552 |
2.31e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 2.31e-03
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
493-526 |
2.57e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 2.57e-03
10 20 30
....*....|....*....|....*....|....
gi 2462538105 493 PAALTNKGNTVFANGDYEKAAEFYKEALRNDSSC 526
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
222-313 |
2.62e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 222 YAEALNTYQVIVKN----KMFSNAgilKMNMGNIYLKQRNYSKAIKFYRMALDQVPsvNKQMRIKIMQNIGVTFIQAGQY 297
Cdd:COG1729 9 YDEAIAAFKAFLKRypnsPLAPDA---LYWLGEAYYALGDYDEAAEAFEKLLKRYP--DSPKAPDALLKLGLSYLELGDY 83
|
90
....*....|....*.
gi 2462538105 298 SDAINSYEHIMSMAPN 313
Cdd:COG1729 84 DKARATLEELIKKYPD 99
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
607-695 |
4.25e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 607 REGDKSQAFQYYYESYRYFPCNI---EVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQ---LMVASCFRRSGNYQ 680
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGDYD 84
|
90
....*....|....*
gi 2462538105 681 KALDTYKDTHRKFPE 695
Cdd:COG1729 85 KARATLEELIKKYPD 99
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
528-559 |
4.28e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 4.28e-03
10 20 30
....*....|....*....|....*....|..
gi 2462538105 528 EALYNIGLTYEKLNRLDEALDCFLKLHAILRN 559
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
493-526 |
4.84e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.84e-03
10 20 30
....*....|....*....|....*....|....
gi 2462538105 493 PAALTNKGNTVFANGDYEKAAEFYKEALRNDSSC 526
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
635-691 |
6.41e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 6.41e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462538105 635 LGAYYIDTQFWEKAIQYFERASLIQ--------PTQVKWQLMVASCFRRSGNYQKALDTYKDTHR 691
Cdd:pfam13424 9 LAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
592-698 |
7.88e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 38.36 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462538105 592 PTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVAS 671
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149
|
90 100
....*....|....*....|....*..
gi 2462538105 672 CFRRSGNYQKALDTYKDTHRKFPENVE 698
Cdd:COG4785 150 ALYYLGRYELAIADLEKALELDPNDPE 176
|
|
| |
