|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-827 |
4.15e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.12 E-value: 4.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 160 QLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDA---ETKRALEELTEKLNEAQKqevVSDRVERRLQELEREMRTERE 236
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEkleELRLEVSELEEEIEELQK---ELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 237 LVERRQDQLGLMSLQLQEALKKQEAKADEhegaiknkLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQL 316
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEE--------LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 317 TKAEGDRKGLQHQVSQISKQQSnYQDEQGEDWRFRRgvEREKQDLEKQMSDLrVQLNFSAMASELEEVKRCMERKDKEKA 396
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIE-RLEARLERLEDRR--ERLQQEIEELLKKL-EEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 397 HLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEA-ERKHADLQ-------------------ISELTRHAEDATK 456
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlQENLEGFSegvkallknqsglsgilgvLSELISVDEGYEA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 457 QAERYLSELQQS-------------EALKEEAEKRREDLKLKAqesirqwkLKHKKLERALEKQSETVDELTGKNNQILK 523
Cdd:TIGR02168 538 AIEAALGGRLQAvvvenlnaakkaiAFLKQNELGRVTFLPLDS--------IKGTEIQGNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 524 EKDELK-------------TQLYAALQQIENLRKELN------DVLTKRAL--------------QEEELHSKEEKLRDI 570
Cdd:TIGR02168 610 FDPKLRkalsyllggvlvvDDLDNALELAKKLRPGYRivtldgDLVRPGGVitggsaktnssileRRREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 571 KSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANK 650
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 651 LAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQrELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAE 730
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT-LLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 731 NrirtlKAESLEEKNmakihrGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEAR 810
Cdd:TIGR02168 849 E-----LSEDIESLA------AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
730
....*....|....*..
gi 2462539046 811 LQLKDQLLCLETEQESI 827
Cdd:TIGR02168 918 EELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-769 |
2.14e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.80 E-value: 2.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 166 QSLRDLSSEQIRLGDDFNRELSRR-------SRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELV 238
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 239 ERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKL----RQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRT 314
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEellkKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 315 QLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGV---EREKQDLEKQMSDLRVQLNF---------SAMASELE 382
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVkalLKNQSGLSGILGVLSELISVdegyeaaieAALGGRLQ 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 383 EVkrCMERKDKEKAHLASQVENltreleNGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQ--ISELTRHAEDATKQAER 460
Cdd:TIGR02168 549 AV--VVENLNAAKKAIAFLKQN------ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLgvAKDLVKFDPKLRKALSY 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 461 YLSELQQSEALKEEAEKRRedlKLKAQESI------------------RQWKLKHKKLERALEKQSETVDELTGKNNQIL 522
Cdd:TIGR02168 621 LLGGVLVVDDLDNALELAK---KLRPGYRIvtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELE 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 523 KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQ 602
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 603 SQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATI 682
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 683 ---ITQLKLERDVHQRELKdltsSLQSVKTKHEQNIQELMKHFKKEKS---EAENRIRTLKAESLEEKNMAKIHRGQLEK 756
Cdd:TIGR02168 858 aaeIEELEELIEELESELE----ALLNERASLEEALALLRSELEELSEelrELESKRSELRRELEELREKLAQLELRLEG 933
|
650
....*....|...
gi 2462539046 757 LKSQCDRLTEELT 769
Cdd:TIGR02168 934 LEVRIDNLQERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
218-837 |
2.24e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.68 E-value: 2.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 218 DRVERRLQELEREMRT---ERELVERRQDqlglmsLQLQEALKKQEAKADEHEgAIKNKLRQTETEKNQLEQELELSRRL 294
Cdd:COG1196 189 ERLEDILGELERQLEPlerQAEKAERYRE------LKEELKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 295 LNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfRRGVEREKQDLEKQMSDLRVQLnf 374
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER-------RRELEERLEELEEELAELEEEL-- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 375 SAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDA 454
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 455 TKQAERYLSELQQSEALKEEAEKRREDLKLKAQEsirqwklkhkkLERALEKQSETVDELTGKNNQILKEKDELKTQLYA 534
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEE-----------AAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 535 ALQQIENLRKELNdvLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEK--AHL 612
Cdd:COG1196 482 LLEELAEAAARLL--LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEddEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 613 EEEIAELKKSQAQDKAKLLEmqesikDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDV 692
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPL------DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 693 HQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNE 772
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462539046 773 NENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDA 837
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
180-959 |
2.35e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.80 E-value: 2.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 180 DDFNRELSRRSRSDAETKRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQdqlglmslQLQEALKKQ 259
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEK---LEELRLEVSELEEEIEELQKELYALA--------NEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 260 EAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLqhqvsqisKQQSN 339
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL--------ESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 340 YQDEQGEdwRFRRGVEREKQDLEKQMsdlrvqlnfsamaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQM 419
Cdd:TIGR02168 376 ELEEQLE--TLRSKVAQLELQIASLN-------------NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 420 -LDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQsealKEEAEKRREDLKLKAQESIRQWKLKHK 498
Cdd:TIGR02168 441 eLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQS 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 499 KLERALEKQSE--TVDE---------LTGKNNQILKEKDELKTQLYAALQQIENLRKELN--DVLTKRALQEEELHSKEE 565
Cdd:TIGR02168 517 GLSGILGVLSEliSVDEgyeaaieaaLGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLplDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 566 K------LRDIKSHQADLELEVKNSLDTIH---RLESELKKQSKIQSQMKVekAHLEEEIAE----LKKSQAQDKAKLLE 632
Cdd:TIGR02168 597 IegflgvAKDLVKFDPKLRKALSYLLGGVLvvdDLDNALELAKKLRPGYRI--VTLDGDLVRpggvITGGSAKTNSSILE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 633 MQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRElkdltsslqsvkTKHE 712
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL------------EAEV 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 713 QNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQN-------ENENKKLKLKYQCL 785
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALrealdelRAELTLLNEEAANL 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 786 KDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQEsilgvigkEIDAACKTFSKDSVEKLKVFSSgpdihydPHR 865
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE--------ELEELIEELESELEALLNERAS-------LEE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 866 WLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLtENKESELQCLFQQIerQEQLLDEIHREKRDLLEETQRKD 945
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQL-ELRLEGLEVRIDNL--QERLSEEYSLTLEEAEALENKIE 964
|
810
....*....|....
gi 2462539046 946 EEMGSLQDRVIALE 959
Cdd:TIGR02168 965 DDEEEARRRLKRLE 978
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
174-810 |
1.09e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 85.96 E-value: 1.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 174 EQIRLGDDFNRELSRR---SRSDAETKRALE----ELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlg 246
Cdd:PTZ00121 1144 EARKAEDAKRVEIARKaedARKAEEARKAEDakkaEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE-- 1221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 247 lMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRR---LLNQSEGSRETLLHQVEELRT--QLTKAEG 321
Cdd:PTZ00121 1222 -DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARrqaAIKAEEARKADELKKAEEKKKadEAKKAEE 1300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 322 DRKGLQHQVSQISKQQSNYQDEQGEDWRfRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQ 401
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAEEAK-KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 402 VENLTRELENGEK--QQLQMLDRLKEIQNHFDTCEAERKHAD--LQISELTRHAEDATKQAErylsELQQSEALKEEAEK 477
Cdd:PTZ00121 1380 ADAAKKKAEEKKKadEAKKKAEEDKKKADELKKAAAAKKKADeaKKKAEEKKKADEAKKKAE----EAKKADEAKKKAEE 1455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 478 RR--EDLKLKAQESIRQWKLKHKKLERalekqsETVDELTGKNNQILKEKDELKTQLYAAlQQIENLRKelndvlTKRAL 555
Cdd:PTZ00121 1456 AKkaEEAKKKAEEAKKADEAKKKAEEA------KKADEAKKKAEEAKKKADEAKKAAEAK-KKADEAKK------AEEAK 1522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 556 QEEELHSKEEKLRDIKSHQAdlelEVKNSLDTIHRLEsELKKQSKIQsqmKVEKAHLEEEIAELKKSQAQ-----DKAKL 630
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKA----EEKKKADELKKAE-ELKKAEEKK---KAEEAKKAEEDKNMALRKAEeakkaEEARI 1594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 631 LEMQESIKDLSAIRADLANKlAEEERAKKAVLK---DLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSV 707
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKK-AEEAKIKAEELKkaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 708 KTKHEQNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIHRG-QLEKLKSQCDRLTEELTQNENENKKlklKYQCLK 786
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAeELKKAEEENKIKAEEAKKEAEEDKK---KAEEAK 1750
|
650 660
....*....|....*....|....
gi 2462539046 787 DQLEEREKHISIEEEHLRRMEEAR 810
Cdd:PTZ00121 1751 KDEEEKKKIAHLKKEEEKKAEEIR 1774
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
190-810 |
3.28e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 84.42 E-value: 3.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 190 SRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlglMSLQLQEALKKQEAKADEHEGA 269
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE---DARKAEEARKAEDAKRVEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 270 IKNKLRQTETEKNQLEQELELSRRLLnqsEGSRETLLHQVEELRtqltKAEGDRKglqhqVSQISKQQSNYQDEQGEDWR 349
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEAARKAE---EVRKAEELRKAEDAR----KAEAARK-----AEEERKAEEARKAEDAKKAE 1227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 350 FRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNH 429
Cdd:PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA 1307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 430 FDTCEAERKHADL--QISELTRHAEDATKQAERylsELQQSEALKEEAEKRREDLKlKAQESIRQWKLK---HKKLERAL 504
Cdd:PTZ00121 1308 KKKAEEAKKADEAkkKAEEAKKKADAAKKKAEE---AKKAAEAAKAEAEAAADEAE-AAEEKAEAAEKKkeeAKKKADAA 1383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 505 EKQSETV---DELTGKNNQILKEKDELKTQlYAALQQIENLRKELNDV-----LTKRALQE---EELHSKEEKLRdiKSH 573
Cdd:PTZ00121 1384 KKKAEEKkkaDEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKkkadeAKKKAEEAkkaDEAKKKAEEAK--KAE 1460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 574 QADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEE---------EIAELKKSQAQDKAKLLEMQESIKDLSAIR 644
Cdd:PTZ00121 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakkaaeakkKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 645 ADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEE-------TATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQE 717
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEdknmalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 718 LMKHFKKEKsEAENRIRTLKAESLEEKNMA----------KIHRGQLEKLKSQCDRLTEELTQNENENKKlklKYQCLKD 787
Cdd:PTZ00121 1621 KAEELKKAE-EEKKKVEQLKKKEAEEKKKAeelkkaeeenKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK---AAEALKK 1696
|
650 660
....*....|....*....|....*.
gi 2462539046 788 QLEEREKHISI---EEEHLRRMEEAR 810
Cdd:PTZ00121 1697 EAEEAKKAEELkkkEAEEKKKAEELK 1722
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
160-706 |
4.42e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.45 E-value: 4.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 160 QLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAE---TKRALEELTEKLNEAQKQEVvsdRVERRLQELEREMRTERE 236
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAEleeLRLELEELELELEEAQAEEY---ELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 237 LVERRQDQLglmslqlqEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQL 316
Cdd:COG1196 310 RRRELEERL--------EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 317 TKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKA 396
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE--EEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 397 HLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISE-LTRHAEDATKQAERYLSELQQSEALKEEA 475
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 476 EKRREDLKLK---------AQESIRQwkLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLR-KE 545
Cdd:COG1196 540 LEAALAAALQnivveddevAAAAIEY--LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARyYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 546 LNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQ 625
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 626 DKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQ 705
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
.
gi 2462539046 706 S 706
Cdd:COG1196 778 A 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
389-949 |
7.44e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 7.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 389 ERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQS 468
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 469 EALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELND 548
Cdd:COG1196 301 EQDIARLEERRREL----EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 549 VLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKA 628
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 629 KLLEMQESIKDLSAIRADLANKLAEEERAK-KAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSV 707
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELaEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 708 KTKHEQNIQELMKHFK-KEKSEAENRIRTLKAESLEEKN---MAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQ 783
Cdd:COG1196 537 EAALEAALAAALQNIVvEDDEVAAAAIEYLKAAKAGRATflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 784 CLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLclETEQESILGVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDP 863
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL--EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 864 HRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQR 943
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
....*.
gi 2462539046 944 KDEEMG 949
Cdd:COG1196 775 EIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
359-959 |
8.31e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 8.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 359 QDLEKQMSDLRVQLnfsaMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERK 438
Cdd:COG1196 216 RELKEELKELEAEL----LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 439 HADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQEsirqwklkhkkLERALEKQSETVDELTGKN 518
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE-----------LEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 519 NQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQ 598
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 599 SKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDltAQAKSRDEE 678
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG--VKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 679 TATIITQLKLERDVHQRELKDLTSSLQSVktkhEQNIQElmkhfkKEKSEAENRIRTLKAESLEEKN---MAKIHRGQLE 755
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAA----LQNIVV------EDDEVAAAAIEYLKAAKAGRATflpLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 756 KLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDqllclETEQESILGVIGKEI 835
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE-----VTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 836 DAACKTFSKDSVEKLkvfssgpdihydphRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQC 915
Cdd:COG1196 664 GGSRRELLAALLEAE--------------AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2462539046 916 LFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALE 959
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
198-764 |
1.16e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 1.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 198 RALEELTEKLNEAQKQEvvsDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQT 277
Cdd:COG1196 232 LKLRELEAELEELEAEL---EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 278 ETEKNQLEQELELSRRLLNQsEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVERE 357
Cdd:COG1196 309 ERRRELEERLEELEEELAEL-EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 358 KQDLEKQMSDLRVQLNFSAMASELEEVKRcmERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAER 437
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERL--ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 438 KHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDE--LT 515
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEaaLA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 516 GKNNQILKEKDElktqlyAALQQIENLRKELNDVLTKRALQEEelhsKEEKLRDIKSHQADLELEVKNSLDTIHRLESEL 595
Cdd:COG1196 546 AALQNIVVEDDE------VAAAAIEYLKAAKAGRATFLPLDKI----RARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 596 KKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSR 675
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 676 DEETATIITQLKLERDVHQRELKDLTSSLQsvktKHEQNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIhRGQLE 755
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEA----LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL-ERELE 770
|
....*....
gi 2462539046 756 KLKSQCDRL 764
Cdd:COG1196 771 RLEREIEAL 779
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
314-833 |
5.68e-15 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 79.68 E-value: 5.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 314 TQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEdwrfrrgVEREKQDLEKQMSDLRVQLNfsamasELEEVKRCMERKDK 393
Cdd:TIGR04523 145 TEIKKKEKELEKLNNKYNDLKKQKEELENELNL-------LEKEKLNIQKNIDKIKNKLL------KLELLLSNLKKKIQ 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 394 EKAHLASQVENLtrelengEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKE 473
Cdd:TIGR04523 212 KNKSLESQISEL-------KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 474 EAEKRREDLKLKAQESIRQWKLK-HKKLERALEKQSETVDELTGKNNQILKEKDELKtqlyaalQQIENLRKELNDVLTK 552
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQISQNNKIISQLN-------EQISQLKKELTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 553 RALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLE 632
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 633 MQESIKDLSairadlanklaEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVkTKHE 712
Cdd:TIGR04523 438 NNSEIKDLT-----------NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKL-NEEK 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 713 QNIQELMKHFKKEKSEAENRIRTLKAE---------SLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQ 783
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKEKIEKLESEkkekeskisDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQE 585
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 2462539046 784 CLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGK 833
Cdd:TIGR04523 586 EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
276-814 |
3.33e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 77.47 E-value: 3.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 276 QTETEKNQLEQELELsrrLLNQSEGSRETLL--HQVE--ELRTQLTKAEGDRKGLQHQVSQISKQQSN--------YQDE 343
Cdd:pfam15921 246 QLEALKSESQNKIEL---LLQQHQDRIEQLIseHEVEitGLTEKASSARSQANSIQSQLEIIQEQARNqnsmymrqLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 344 QGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAmaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRL 423
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDKIEELEKQLVLAN--SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 424 KEIQNHfDTCEAerkhadLQISELTRHAEDATKQAERYLSELQqseALKEEAEKRREDLKLKAQ---ESIRQWKLKHKKL 500
Cdd:pfam15921 401 KRLWDR-DTGNS------ITIDHLRRELDDRNMEVQRLEALLK---AMKSECQGQMERQMAAIQgknESLEKVSSLTAQL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 501 ERALEKQSETVDELTGKNnQILKEKDELKTQLYAALQQIENLRKELNDVLTKR------ALQE-EELHSKEEKLRDIKSH 573
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKK-MTLESSERTVSDLTASLQEKERAIEATNAEITKLrsrvdlKLQElQHLKNEGDHLRNVQTE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 574 QADLELEVKNSLDTIHRLESELKKQSKIQSQ-------MKVEKAHLEEEI-------AELKKSQAQDKAKLLEMQESIKD 639
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEIndrrlelQEFKILKDKKDAKIRELEARVSD 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 640 LSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEEtatiITQLKLERDVHQRELKDLTSSLQSVKTKheqniqeLM 719
Cdd:pfam15921 630 LELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE----LNSLSEDYEVLKRNFRNKSEEMETTTNK-------LK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 720 KHFKKEKSEAENRIRTLKAESLEEKNMAKI----------HRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQL 789
Cdd:pfam15921 699 MQLKSAQSELEQTRNTLKSMEGSDGHAMKVamgmqkqitaKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQEL 778
|
570 580
....*....|....*....|....*..
gi 2462539046 790 E--EREKHISIEEEHLRRMEEARLQLK 814
Cdd:pfam15921 779 StvATEKNKMAGELEVLRSQERRLKEK 805
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
413-744 |
4.99e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.03 E-value: 4.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 413 EKQQLQML-DRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQ----SEALKEEAEKRREDLKLKAQ 487
Cdd:TIGR02169 672 EPAELQRLrERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqeEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 488 EsIRQWKLKHKKLERALEKQSETVDELTGKNN------------QILKEKDELKTQLYAALQQIENLRKELNDVLTKRAL 555
Cdd:TIGR02169 752 E-IENVKSELKELEARIEELEEDLHKLEEALNdlearlshsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 556 QEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQE 635
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 636 SIKDLSAIRADLANKLAeeerAKKAVLKDLSDLTAQAKSRDEETAtIITQLKLERDVHQRELkdltSSLQSVKTKHEQNI 715
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLE----ALEEELSEIEDPKGEDEEIPEEEL-SLEDVQAELQRVEEEI----RALEPVNMLAIQEY 981
|
330 340 350
....*....|....*....|....*....|....
gi 2462539046 716 QELMKHF-----KKEKSEAENRIRTLKAESLEEK 744
Cdd:TIGR02169 982 EEVLKRLdelkeKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
223-981 |
5.55e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 5.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 223 RLQELEREMRTERELVERRQDQLGLMSLQLqEALKKQEAKADEHEgAIKNKLRQTE-----TEKNQLEQELELSRRLLNQ 297
Cdd:TIGR02168 173 RRKETERKLERTRENLDRLEDILNELERQL-KSLERQAEKAERYK-ELKAELRELElallvLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 298 SEgsretllHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDL-----RVQL 372
Cdd:TIGR02168 251 AE-------EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLerqleELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 373 NFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAErkhadlqISELTRHAE 452
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK-------VAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 453 DATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESirqwklkhkklerALEKQSETVDELtgknNQILKEKDELKTQL 532
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA-------------ELKELQAELEEL----EEELEELQEELERL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 533 YAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELkkqSKIQSQMKVEkahl 612
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL---GVLSELISVD---- 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 613 eeeiAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE-ETATIITQLKLERD 691
Cdd:TIGR02168 533 ----EGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIlKNIEGFLGVAKDLV 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 692 VHQRELKDLTSSL--QSVKTKHEQNIQELMKhfkkeKSEAENRIRTLKAES------------------LEEKNMAKIHR 751
Cdd:TIGR02168 609 KFDPKLRKALSYLlgGVLVVDDLDNALELAK-----KLRPGYRIVTLDGDLvrpggvitggsaktnssiLERRREIEELE 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 752 GQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVI 831
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 832 GKEIDAACKTFSKdsveklkvfssgpdihydphrwLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTE---N 908
Cdd:TIGR02168 764 EELEERLEEAEEE----------------------LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaaN 821
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462539046 909 KESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALETSTQVALDHLESVPEKLSLLED 981
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
187-598 |
9.47e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 9.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 187 SRRSRSDAETKRALEELTEKLNEaqkqevvsdrverrLQELEREMRTERELVERRQDQLglmsLQLQEALKKQEAKADEH 266
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEE--------------LEEKIAELEKALAELRKELEEL----EEELEQLRKELEELSRQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 267 EGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGE 346
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 347 dwrfrrgVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEI 426
Cdd:TIGR02168 808 -------LRAELTLLNEEAANLRERLE--SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 427 QNhfdtceaERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKaQESIRQwKLKHKKlERALEK 506
Cdd:TIGR02168 879 LN-------ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR-LEGLEV-RIDNLQ-ERLSEE 948
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 507 QSETVDELTGKNNQILKEKDELKTQLyaalQQIENLRKELNDVltkRALQEEELHSKEEKLRDIKSHQADLELEVKNSLD 586
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRL----KRLENKIKELGPV---NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
410
....*....|..
gi 2462539046 587 TIHRLESELKKQ 598
Cdd:TIGR02168 1022 AIEEIDREARER 1033
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
444-794 |
1.73e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 1.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 444 ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKklERALEKQSetvdeLTGKNNQILK 523
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAE--LRELELAL-----LVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 524 EKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKShqadlelEVKNSLDTIHRLESELKKQSKIQS 603
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK-------ELYALANEISRLEQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 604 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAksrdEETATII 683
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 684 TQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKK----EKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKS 759
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKleeaELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350
....*....|....*....|....*....|....*
gi 2462539046 760 QCDRLTEELTQNENENKKLKLKYQCLKDQLEEREK 794
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
222-948 |
3.70e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.41 E-value: 3.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 222 RRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGS 301
Cdd:PTZ00121 1027 EKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 302 RETLLHQVEELRTQLTKAEGDRKGLQ-HQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASE 380
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEaRKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE 1186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 381 L---EEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTC---EAERKHADLQISELTRHAEDA 454
Cdd:PTZ00121 1187 VrkaEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAkkaEEERNNEEIRKFEEARMAHFA 1266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 455 TKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLE-RALEKQSETVDELTGKNNQILKEKDELKTQLY 533
Cdd:PTZ00121 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 534 AALQQIENLRKELNDvlTKRALQEEELHSKEEKLrdiKSHQADLELEVKNSLDTIHRLESELKKQSKiqsqmKVEKAHLE 613
Cdd:PTZ00121 1347 AAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKK---KADAAKKKAEEKKKADEAKKKAEEDKKKAD-----ELKKAAAA 1416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 614 EEIAELKKSQAQDKAKLLEMQESIKDlsAIRADLANKLAEEER-AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDV 692
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKkAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 693 HQRELKDLTSSLQSVKTKHEQNIQELMKHfKKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNE 772
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKK-ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 773 NENKKLKLKYQCLKDQLEER--------EKHISIEEEHLRRMEEARLQlKDQLLCLETEQESILGVIGKEIDaacktfSK 844
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEARieevmklyEEEKKMKAEEAKKAEEAKIK-AEELKKAEEEKKKVEQLKKKEAE------EK 1646
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 845 DSVEKLKVFSSGPDIHYDPHRWLAESKTKlqwLCEELKERENREKNLRHQLMLCRQQLRNLTE--NKESELQCLFQQIER 922
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKK---KAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEAEEKKKAEELKK 1723
|
730 740
....*....|....*....|....*.
gi 2462539046 923 QEQLLDEIHREKRDLLEETQRKDEEM 948
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
166-655 |
9.65e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 9.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 166 QSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQL 245
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 246 glmsLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKG 325
Cdd:COG1196 389 ----LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 326 LQHQVSQISKQQSNYQDEQGEdwrfrRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:COG1196 465 LAELLEEAALLEAALAELLEE-----LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 406 TRELENGEKQQLQMLD--RLKEIQNHFDTCEAERKH--ADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRRED 481
Cdd:COG1196 540 LEAALAAALQNIVVEDdeVAAAAIEYLKAAKAGRATflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 482 LKLKAQESIRQWKLKHKKLERAL-EKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEEL 560
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLaGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 561 HSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDL 640
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
490
....*....|....*
gi 2462539046 641 SAIradlaNKLAEEE 655
Cdd:COG1196 780 GPV-----NLLAIEE 789
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
254-981 |
1.24e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.41 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 254 EALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLlnqSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQI 333
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEK---REYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 334 skqqsnyqdeqgedwrfrrgvEREKQDLEKQMSDLRVQLNfsamaselEEVKRCMERKDKEKAHLASQVENLTRELENGE 413
Cdd:TIGR02169 257 ---------------------TEEISELEKRLEEIEQLLE--------ELNKKIKDLGEEEQLRVKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 414 KQQLQMLDRLKEIqnhfdtcEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQE---SI 490
Cdd:TIGR02169 308 RSIAEKERELEDA-------EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 491 RQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDI 570
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 571 KSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRAD--LA 648
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERyaTA 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 649 NKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS-------------------------- 702
Cdd:TIGR02169 541 IEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSedgvigfavdlvefdpkyepafkyvf 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 703 -------------------------------------------SLQSVKTKHEQNIQEL----------MKHFKKEKSEA 729
Cdd:TIGR02169 621 gdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraprGGILFSRSEPAELQRLrerleglkreLSSLQSELRRI 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 730 ENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEA 809
Cdd:TIGR02169 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 810 RLQLKDQLLcleteqESILGVIGKEIDAACKTFSKDSveklkvfssgpDIHYDPHRWLAESKTKLQWLCEELKERENREK 889
Cdd:TIGR02169 781 LNDLEARLS------HSRIPEIQAELSKLEEEVSRIE-----------ARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 890 NLRHQLMLCRQQLRNLTENKESelqcLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALETSTQVALDHL 969
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEE----LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
810
....*....|..
gi 2462539046 970 ESVPEKLSLLED 981
Cdd:TIGR02169 920 SELKAKLEALEE 931
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
434-739 |
2.03e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 434 EAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLK---AQESIRQWKLKHKKLERALEKQSET 510
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQisaLRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 511 VDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIH- 589
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAa 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 590 ------RLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLK 663
Cdd:TIGR02168 836 terrleDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462539046 664 DLsdltaqaksrdEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENRIRTLKAE 739
Cdd:TIGR02168 916 EL-----------EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
184-732 |
4.76e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.48 E-value: 4.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 184 RELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLqEALKKQEAKA 263
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI-EELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 264 DEHEGAIKNKLRQTETEKNQLE---QELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNY 340
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKkeiEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 341 QDeqgedwrfRRGVEREKQDLEKQMSDLRVQLN-FSAMASELEEVKRCMERKDKEKAHLAS-QVENLTRELENGEKQQLQ 418
Cdd:PRK03918 331 KE--------LEEKEERLEELKKKLKELEKRLEeLEERHELYEEAKAKKEELERLKKRLTGlTPEKLEKELEELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 419 MLDRLKEIQNHFDTCEAERKHADLQISELTR------------HAEDATKQAERYLSELQQSEALKEEAEKRREDLK--L 484
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRkeL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 485 KAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKE 564
Cdd:PRK03918 483 RELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 565 EKLRDIKSHQADLELEVKN----SLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDL 640
Cdd:PRK03918 563 KKLDELEEELAELLKELEElgfeSVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 641 SAIRADLANKLA----EEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKT--KHEQN 714
Cdd:PRK03918 643 EELRKELEELEKkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKleKALER 722
|
570
....*....|....*...
gi 2462539046 715 IQELMKHFKKEKSEAENR 732
Cdd:PRK03918 723 VEELREKVKKYKALLKER 740
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-655 |
1.04e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 310 EELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfRRGVEREKQDLEKQMSDLRVQLnfsamaseleevkrcmE 389
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEE-------LEQLRKELEELSRQISALRKDL----------------A 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 390 RKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQI------------------SELTRHA 451
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlkeelkalrealdelrAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 452 EDATKQAERylseLQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQ 531
Cdd:TIGR02168 817 EEAANLRER----LESLERRIAATERRLEDL----EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 532 LYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNsldtihrleselkKQSKIQSQMKVEKAH 611
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN-------------LQERLSEEYSLTLEE 955
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2462539046 612 LEEEIAELKKSQAQDKAKLLEMQESIKDLSAIradlaNKLAEEE 655
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKIKELGPV-----NLAAIEE 994
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
381-959 |
2.08e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.17 E-value: 2.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 381 LEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAER 460
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 461 YLSELQQSEALKE---EAEKRREDLKLKaqesIRQWKLKHKKLERaLEKQSETVDELTGKNNQILKEKDELKTQLYAALQ 537
Cdd:PRK03918 247 LESLEGSKRKLEEkirELEERIEELKKE----IEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 538 QIENLRKELNDVLTKralqEEELHSKEEKLRDIKSHQADLELEVKnSLDTIHRLESELKKQSKIQSQMKVEKahLEEEIA 617
Cdd:PRK03918 322 EINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGLTPEK--LEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 618 ELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAV------------LKDLSDLTAQAKSRDEETATIITQ 685
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrelteehrKELLEEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 686 LK--LERDVHQRELKDLTSSLQSVKTKHEQ--NIQELMKHFKKEKSEAENR-IRTLKAESLEEKNMAKIHRGQLEKLKSq 760
Cdd:PRK03918 475 ERklRKELRELEKVLKKESELIKLKELAEQlkELEEKLKKYNLEELEKKAEeYEKLKEKLIKLKGEIKSLKKELEKLEE- 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 761 cdrLTEELTQNENENKKLKLKYQCLKDQLEERE-KHISIEEEHLRRMEEAR---LQLKDQLLCLETEQESIlgvigkeid 836
Cdd:PRK03918 554 ---LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYneyLELKDAEKELEREEKEL--------- 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 837 AACKTFSKDSVEKlkvfssgpdihydphrwLAESKTKLQWLCEELKERENREKNLRHqlmlcrQQLRNLTENKESELQCL 916
Cdd:PRK03918 622 KKLEEELDKAFEE-----------------LAETEKRLEELRKELEELEKKYSEEEY------EELREEYLELSRELAGL 678
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 2462539046 917 FQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALE 959
Cdd:PRK03918 679 RAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
199-808 |
4.42e-11 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 67.51 E-value: 4.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 199 ALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEgaiknKLRQTE 278
Cdd:pfam01576 357 ALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESE-----RQRAEL 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 279 TEK-NQLEQELELSRRLLNQSEG----------SRETLLHQVEELRTQLTKAegdRKGLQHQVSQISKQQSNYQDEQGED 347
Cdd:pfam01576 432 AEKlSKLQSELESVSSLLNEAEGkniklskdvsSLESQLQDTQELLQEETRQ---KLNLSTRLRQLEDERNSLQEQLEEE 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 348 WRFRRGVEREKQDLEKQMSDLRVQLNFSAMASE-LEEVKR-----------CMERKDKEKAHLASQVENLTRELEN---G 412
Cdd:pfam01576 509 EEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEaLEEGKKrlqrelealtqQLEEKAAAYDKLEKTKNRLQQELDDllvD 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 413 EKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKqaERYLSELQQSEALKEEAEKRREdlklkAQESIRQ 492
Cdd:pfam01576 589 LDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAR--EKETRALSLARALEEALEAKEE-----LERTNKQ 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 493 WKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQ---LYAALQQIEN--LRKELNdVLTKRALQEEELHSKEEK- 566
Cdd:pfam01576 662 LRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQleeLEDELQATEDakLRLEVN-MQALKAQFERDLQARDEQg 740
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 567 -------LRDIKSHQADLELEVK---NSLDTIHRLESELKkqsKIQSQMKVEKAHLEEEIAELKKSQAQDKakllEMQES 636
Cdd:pfam01576 741 eekrrqlVKQVRELEAELEDERKqraQAVAAKKKLELDLK---ELEAQIDAANKGREEAVKQLKKLQAQMK----DLQRE 813
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 637 IKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETatiiTQLKLERDVHQRELKDLTSSLQSVktkheqniq 716
Cdd:pfam01576 814 LEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERAR----RQAQQERDELADEIASGASGKSAL--------- 880
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 717 elmkhfKKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELT--------------QNENENKKLKLKY 782
Cdd:pfam01576 881 ------QDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAaerstsqksesarqQLERQNKELKAKL 954
|
650 660
....*....|....*....|....*..
gi 2462539046 783 QCLKDQLEEREKH-ISIEEEHLRRMEE 808
Cdd:pfam01576 955 QEMEGTVKSKFKSsIAALEAKIAQLEE 981
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
283-664 |
9.86e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 9.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 283 QLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDR-KGLQHQVSQISKQQSnyqdEQGEDWRFRRGVEREKQDL 361
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREReKAERYQALLKEKREY----EGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 362 EKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKAHLASQVENLTRELEN-GEKQQLQMLDRLKEIqnhfdtcEAERKHA 440
Cdd:TIGR02169 243 ERQLASLE---------EELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGEL-------EAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 441 DLQISELTRHAEDATKQAERYLSELqqsEALKEEAEKRREDlklkaqesIRQWKLKHKKLERALEKQSETVDELTGKNNQ 520
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEI---DKLLAEIEELERE--------IEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 521 ILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSK 600
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462539046 601 IQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAiRADLANKLAEEERAKKAVLKD 664
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA-QARASEERVRGGRAVEEVLKA 518
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
191-664 |
2.14e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 2.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 191 RSDAETKRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGlMSLQLQEALKKQEAKADEHEGAI 270
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKK---ADAAKKKAEEAKKAAEAAKAEAEAAADEAE-AAEEKAEAAEKKKEEAKKKADAA 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 271 KNK---LRQTETEKNQLEQELELSRRLLNQSEGSR--ETLLHQVEELRtqltKAEGDRKGLQHQVSQISKQQSNYQDEQG 345
Cdd:PTZ00121 1384 KKKaeeKKKADEAKKKAEEDKKKADELKKAAAAKKkaDEAKKKAEEKK----KADEAKKKAEEAKKADEAKKKAEEAKKA 1459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 346 EDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASEL----EEVKRCMERKDK----EKAHLASQVENLTRELENGEKQQL 417
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAkkkaDEAKKAAEAKKKadeaKKAEEAKKADEAKKAEEAKKADEA 1539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 418 QMLDRLKEiqnhfdtCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKH 497
Cdd:PTZ00121 1540 KKAEEKKK-------ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 498 KKLERALEKQSETvdeltGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKR---ALQEEELHSKEEKLRDI---- 570
Cdd:PTZ00121 1613 KKAEEAKIKAEEL-----KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaeeAKKAEEDKKKAEEAKKAeede 1687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 571 --KSHQADLELEVKNSLDTIHRLESELKKQSKiqsQMKVEKAHLEEEIAELKKSQAQDKAKLLEM---QESIKDLSAIRA 645
Cdd:PTZ00121 1688 kkAAEALKKEAEEAKKAEELKKKEAEEKKKAE---ELKKAEEENKIKAEEAKKEAEEDKKKAEEAkkdEEEKKKIAHLKK 1764
|
490
....*....|....*....
gi 2462539046 646 DLANKLAEEERAKKAVLKD 664
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIEE 1783
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
153-597 |
3.77e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 3.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMR 232
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 233 TERELVERRQDQLGLMSLQLQEALKKQEAKAdEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEEL 312
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 313 RTQLTKAEGDRKGLQHQVSQISKQQSNyqDEQGEDWRF----RRGVEREKQDLEKQMSDLRVQLNfsamASELEEVKRCM 388
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLL--AGLRGLAGAvavlIGVEAAYEAALEAALAAALQNIV----VEDDEVAAAAI 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 389 ER-KDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQ 467
Cdd:COG1196 564 EYlKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 468 SEALKEEAEkrREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELN 547
Cdd:COG1196 644 GRLREVTLE--GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 2462539046 548 DVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKK 597
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
380-709 |
4.86e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 4.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 380 ELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQlQMLDRLKEIQ-----NHFDTCEAERKHADLQISELTRHAEDA 454
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQ-ALLKEKREYEgyellKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 455 TKQAERYLSELQQSEALKEEAEKRREDL----KLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKt 530
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL- 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 531 qlyaalQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDT-------IHRLESELKKQSKIQS 603
Cdd:TIGR02169 336 ------AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDElkdyrekLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 604 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAiradlanKLAEEERAKKAVLKDLSDLTAQAKSRDEEtatiI 683
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL-------EIKKQEWKLEQLAADLSKYEQELYDLKEE----Y 478
|
330 340
....*....|....*....|....*.
gi 2462539046 684 TQLKLERDVHQRELKDLTSSLQSVKT 709
Cdd:TIGR02169 479 DRVEKELSKLQRELAEAEAQARASEE 504
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
451-794 |
7.10e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.99 E-value: 7.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 451 AEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT 530
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 531 QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKA 610
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 611 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKkavlKDLSDLTAQAKSRDEEtatIITQLKLER 690
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE----EELEKLQEKLEQLEEE---LLAKKKLES 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 691 DVHQRELKDLTSSLqSVKTKHEQNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQ 770
Cdd:pfam02463 384 ERLSSAAKLKEEEL-ELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLK 462
|
330 340
....*....|....*....|....
gi 2462539046 771 NENENKKLKLKYQCLKDQLEEREK 794
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQL 486
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
399-629 |
2.18e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 2.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 399 ASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKR 478
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 479 REDLKLKAQESIRQWKLKHKKLERALEKQSETVdeltgknNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEE 558
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDF-------LDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462539046 559 ELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAK 629
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
532-739 |
2.51e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 532 LYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAH 611
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 612 LEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERD 691
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462539046 692 VHQRELKDLTSSLQSVKTKHEQNiQELMKHFKKEKSEAENRIRTLKAE 739
Cdd:COG4942 175 ELEALLAELEEERAALEALKAER-QKLLARLEKELAELAAELAELQQE 221
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
475-831 |
2.87e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 475 AEKRREDLKLKAQESIRQWKLKHKKLERALEKqsetvdeLTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRA 554
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSS-------LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 555 LQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELkkqSKIQSQMKVEKAHLEEEIAELKKSQAQD-KAKLLEM 633
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL---HKLEEALNDLEARLSHSRIPEIQAELSKlEEEVSRI 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 634 QESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQL-KLERDV--HQRELKDLTSSLqsvktk 710
Cdd:TIGR02169 811 EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKeELEEELeeLEAALRDLESRL------ 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 711 heQNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLkLKYQCLKDQLE 790
Cdd:TIGR02169 885 --GDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE-LSLEDVQAELQ 961
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2462539046 791 EREKHISIEE-------EHLRRMEEARLQLKDQLLCLETEQESILGVI 831
Cdd:TIGR02169 962 RVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
214-929 |
9.33e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 9.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 214 EVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLE---QELEL 290
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQntvHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 291 SRRLLNQSEGSRETllhQVEELRTQLTKAEGdrkgLQHQVSQISKqqsnyqdeqgeDWRFRRGVEREKQDlekQMSDLRV 370
Cdd:pfam15921 157 AKCLKEDMLEDSNT---QIEQLRKMMLSHEG----VLQEIRSILV-----------DFEEASGKKIYEHD---SMSTMHF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 371 QLNFSAMASELEEVkrcmerkDKEKAHLASQVENLTRELENGEKQQLQMLDRLkeIQNHFDTCEAERKHADLQISELTRH 450
Cdd:pfam15921 216 RSLGSAISKILREL-------DTEISYLKGRIFPVEDQLEALKSESQNKIELL--LQQHQDRIEQLISEHEVEITGLTEK 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 451 AEDATKQAERYLSELQ--QSEALKEEA---------EKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNN 519
Cdd:pfam15921 287 ASSARSQANSIQSQLEiiQEQARNQNSmymrqlsdlESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERD 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 520 QILKEKDELKTQLYAALQQIENLRKELNdvLTKRalQEEELHSKEEKLRDIKSHqadLELEVKNSLDTIHRLESELKK-Q 598
Cdd:pfam15921 367 QFSQESGNLDDQLQKLLADLHKREKELS--LEKE--QNKRLWDRDTGNSITIDH---LRRELDDRNMEVQRLEALLKAmK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 599 SKIQSQMKVEKAHLEEEIAELKKSQAqdkakLLEMQESIKDLsairadlANKLAEEERAKKAVLKD----LSDLTAQAKS 674
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSS-----LTAQLESTKEM-------LRKVVEELTAKKMTLESsertVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 675 RD---EETATIITQLKLERDVHQRELKDLTSslqsvKTKHEQNIQELMKHFKKEKSEAENRIRTLKAEsleeknmakihr 751
Cdd:pfam15921 508 KEraiEATNAEITKLRSRVDLKLQELQHLKN-----EGDHLRNVQTECEALKLQMAEKDKVIEILRQQ------------ 570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 752 gqleklksqcdrlTEELTQNENENKKLKLKYQCLKDQLEerekhisieeehlRRMEEARLQLKDQLLCLETEQESIlgvi 831
Cdd:pfam15921 571 -------------IENMTQLVGQHGRTAGAMQVEKAQLE-------------KEINDRRLELQEFKILKDKKDAKI---- 620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 832 gKEIDAackTFSKDSVEKLKVFSSGPDihydPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKES 911
Cdd:pfam15921 621 -RELEA---RVSDLELEKVKLVNAGSE----RLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMET 692
|
730
....*....|....*...
gi 2462539046 912 ELQCLFQQIERQEQLLDE 929
Cdd:pfam15921 693 TTNKLKMQLKSAQSELEQ 710
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
153-411 |
1.02e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMR 232
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 233 TERELVERRQDQLGlmslQLQEALKKQEAKADEHEgaikNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEEL 312
Cdd:TIGR02168 800 ALREALDELRAELT----LLNEEAANLRERLESLE----RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 313 RTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQL--------NFSAMASE---- 380
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLeglevridNLQERLSEeysl 951
|
250 260 270
....*....|....*....|....*....|..
gi 2462539046 381 -LEEVKRCMERKDKEKAHLASQVENLTRELEN 411
Cdd:TIGR02168 952 tLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
183-677 |
1.04e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 183 NRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSlQLQEALKKQEAK 262
Cdd:PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR-EIEKRLSRLEEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 263 ADEHEGAIKnKLRQTETEKNQLEQELELSRRLLNQSEGSREtLLHQVEELRTQLTKAEGDRKGLqhQVSQISKQQSNYQD 342
Cdd:PRK03918 323 INGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGL--TPEKLEKELEELEK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 343 EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNfsamasELEEVKRCME--RKDKEKAHLASQVENLTRELENGEKQQLQML 420
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIE------ELKKAKGKCPvcGRELTEEHRKELLEEYTAELKRIEKELKEIE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 421 DRLKEIQNHFDTCEAERKHAdlqiSELTRHAE--DATKQAERYLSELQqsealKEEAEKRREDLKLKAQESIrqwklKHK 498
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKE----SELIKLKElaEQLKELEEKLKKYN-----LEELEKKAEEYEKLKEKLI-----KLK 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 499 KLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKShqadle 578
Cdd:PRK03918 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEK------ 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 579 lEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKllEMQESIKDLSAIRADLANKLAEEERAK 658
Cdd:PRK03918 613 -ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRR 689
|
490
....*....|....*....
gi 2462539046 659 KAVLKDLSDLTAQAKSRDE 677
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREK 708
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
184-948 |
1.10e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.34 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 184 RELSRRSRSDAETKRALEEL----TEKLNEAQKQEVvsdRVERRLQELE---REMRTERELVERRQDQLGLMSLQLQEAL 256
Cdd:pfam01576 29 KELEKKHQQLCEEKNALQEQlqaeTELCAEAEEMRA---RLAARKQELEeilHELESRLEEEEERSQQLQNEKKKMQQHI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 257 KKQEAKADEHEGAiKNKLR----QTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQ 332
Cdd:pfam01576 106 QDLEEQLDEEEAA-RQKLQlekvTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNK 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 333 ISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENG 412
Cdd:pfam01576 185 HEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQI--AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNA 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 413 EKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQ 492
Cdd:pfam01576 263 LKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRS 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 493 WKLKHKKLEralEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKS 572
Cdd:pfam01576 343 HEAQLQEMR---QKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQA 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 573 HQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKkSQAQDKAKLLE--------MQESIKDLSAIR 644
Cdd:pfam01576 420 RLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLE-SQLQDTQELLQeetrqklnLSTRLRQLEDER 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 645 ADLANKLAEEERAKKAVLKDLSDLTAQ---AKSRDEETATIITQLKLERDVHQRELKDLTSSLqsvktkheqniqelmkh 721
Cdd:pfam01576 499 NSLQEQLEEEEEAKRNVERQLSTLQAQlsdMKKKLEEDAGTLEALEEGKKRLQRELEALTQQL----------------- 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 722 fkKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLE----EREKHIS 797
Cdd:pfam01576 562 --EEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEaearEKETRAL 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 798 IEEEHLRRMEEARLQLKDQLLCLETEQESILgvigkeidaACKTFSKDSVEKLKVFSSGPDihydphRWLAESKTKLQWL 877
Cdd:pfam01576 640 SLARALEEALEAKEELERTNKQLRAEMEDLV---------SSKDDVGKNVHELERSKRALE------QQVEEMKTQLEEL 704
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462539046 878 CEELKERENREKNLrhqlmlcrqqlrnltenkESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEM 948
Cdd:pfam01576 705 EDELQATEDAKLRL------------------EVNMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAE 757
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
753-959 |
1.45e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 753 QLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIG 832
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 833 KEIDAACKTfSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESE 912
Cdd:COG4942 108 ELLRALYRL-GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2462539046 913 LQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALE 959
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
177-623 |
1.54e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.54 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 177 RLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEAL 256
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 257 KKQEAKADEHEGAIKNK-----------LRQTETEKNQLEQEL-ELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRK 324
Cdd:COG4717 130 LYQELEALEAELAELPErleeleerleeLRELEEELEELEAELaELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 325 GLQHQVSQIsKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVqlnFSAMASELEEVKRCMERKDKEKAHLASQVEN 404
Cdd:COG4717 210 ELEEELEEA-QEELEELEEELEQLENELEAAALEERLKEARLLLLI---AAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 405 LTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 484
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 485 KAQESIRQWKLKHKKLE-----RALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQI--ENLRKELNDVLTKRALQE 557
Cdd:COG4717 366 EELEQEIAALLAEAGVEdeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELE 445
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462539046 558 EELHSKEEKLRDIKSHQADLELEVKNS--LDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQ 623
Cdd:COG4717 446 EELEELREELAELEAELEQLEEDGELAelLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
198-706 |
1.65e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 198 RALEELTEKLNEAQKQEVVSDRVERRLQELER--------------EMRTEREL---VERRQDQLGLMSLQLQEALKKQE 260
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKkhqqlceeknalqeQLQAETELcaeAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 261 AKADEHEgaikNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQ--- 337
Cdd:pfam01576 82 SRLEEEE----ERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERkll 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 338 ----SNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMA-SELEEVKRCMERKDKEK----AHLASQVENLTRE 408
Cdd:pfam01576 158 eeriSEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrQELEKAKRKLEGESTDLqeqiAELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 409 LENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEdaTKQAERYLSElQQSEALKEEAEKRREDLKLKAQE 488
Cdd:pfam01576 238 LAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLE--SERAARNKAE-KQRRDLGEELEALKTELEDTLDT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 489 SIRQWKLKHKK------LERALE---------------KQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELN 547
Cdd:pfam01576 315 TAAQQELRSKReqevteLKKALEeetrsheaqlqemrqKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELR 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 548 DVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELkKSQAQDK 627
Cdd:pfam01576 395 TLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL-ESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 628 AKLLE--------MQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQ---AKSRDEETATIITQLKLERDVHQRE 696
Cdd:pfam01576 474 QELLQeetrqklnLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQlsdMKKKLEEDAGTLEALEEGKKRLQRE 553
|
570
....*....|
gi 2462539046 697 LKDLTSSLQS 706
Cdd:pfam01576 554 LEALTQQLEE 563
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-411 |
2.04e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 142 RMRSRTGVRFVQETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLN----EAQKQEVVS 217
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTllneEAANLRERL 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAiKNKLRQTETEKNQLEQELELSRRLLNQ 297
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-LNERASLEEALALLRSELEELSEELRE 905
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 298 SEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN-YQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQL---- 372
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIEDDEEEARRRLKRLENKIkelg 985
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2462539046 373 --NFSAMAsELEEVKrcmERKDkekaHLASQVENLTRELEN 411
Cdd:TIGR02168 986 pvNLAAIE-EYEELK---ERYD----FLTAQKEDLTEAKET 1018
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
201-772 |
3.23e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 54.73 E-value: 3.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 201 EELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGaIKNKLRQTETE 280
Cdd:pfam05483 233 KEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELED-IKMSLQRSMST 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 281 KNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQIskqqsnyqdeqgedwrfrrgVEREKQD 360
Cdd:pfam05483 312 QKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEEL--------------------LRTEQQR 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 361 LEKQMSDLRV-QLNFSAMASELEEVKRCMERKDKEKAHLAS---QVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAE 436
Cdd:pfam05483 372 LEKNEDQLKIiTMELQKKSSELEEMTKFKNNKEVELEELKKilaEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 437 RKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwklkHKKLERALEKQSETVDELTG 516
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQE----ASDMTLELKKHQEDIINCKK 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 517 KNNQILKEKDELKTQLYAALQQIENLRKELndvLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELK 596
Cdd:pfam05483 528 QEERMLKQIENLEEKEMNLRDELESVREEF---IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIE 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 597 KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRD 676
Cdd:pfam05483 605 NKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIA 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 677 EETATIITQLKLErdvHQRELKDLTSSLQSVKTKHEQNIQE------LMKHFKKEKSEA----ENRIRTLKAESLEEKNM 746
Cdd:pfam05483 685 DEAVKLQKEIDKR---CQHKIAEMVALMEKHKHQYDKIIEErdselgLYKNKEQEQSSAkaalEIELSNIKAELLSLKKQ 761
|
570 580
....*....|....*....|....*.
gi 2462539046 747 AKIHRGQLEKLKSQCDRLTEELTQNE 772
Cdd:pfam05483 762 LEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
156-369 |
4.35e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 4.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 156 DDMTQLHGFHQSLRDLSsEQIRLgddfnreLSRRSRSDAETKRALEELTEklNEAQKQEVVSDRVERRLQELEREMRTER 235
Cdd:COG4913 232 EHFDDLERAHEALEDAR-EQIEL-------LEPIRELAERYAAARERLAE--LEYLRAALRLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 236 ELVERRQDQLglmslqlqEALKKQEAKADEHEGAIKNKLRQTETE-KNQLEQELELSRRLLNQSEGSRETLLHQVEELRT 314
Cdd:COG4913 302 AELARLEAEL--------ERLEARLDALREELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462539046 315 QLTKAEGD----RKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLR 369
Cdd:COG4913 374 PLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
451-681 |
6.57e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 6.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 451 AEDATKQAERYLSELQQSealKEEAEKRREDLKLKAQESIRQwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKT 530
Cdd:COG4942 18 QADAAAEAEAELEQLQQE---IAELEKELAALKKEEKALLKQ----LAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 531 QLYAALQQIENLRKELNDVLtkRALQEEELHSKEE----------------KLRDIKSHQADLELEVKNSLDTIHRLESE 594
Cdd:COG4942 91 EIAELRAELEAQKEELAELL--RALYRLGRQPPLAlllspedfldavrrlqYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 595 LKKQSKIQSQMKVEkahLEEEIAELKKSQAqdkakllEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKS 674
Cdd:COG4942 169 LEAERAELEALLAE---LEEERAALEALKA-------ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 2462539046 675 RDEETAT 681
Cdd:COG4942 239 AAERTPA 245
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
170-677 |
9.43e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 9.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 170 DLSSEQIRLgDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGlMS 249
Cdd:PRK01156 191 KLKSSNLEL-ENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS-ME 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 250 LQLQEALKKQEAKADEHEG----AIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETL--LHQVEELRTQLTKAEGDR 323
Cdd:PRK01156 269 LEKNNYYKELEERHMKIINdpvyKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIkkLSVLQKDYNDYIKKKSRY 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 324 KGLQHQVSQISKQQSNYQD-----EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHL 398
Cdd:PRK01156 349 DDLNNQILELEGYEMDYNSylksiESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 399 ASQVENLtRELENGEKQQLQML---------------DRLKEIQNHFDT----CEAERKHADLQISELTRHAEDATKQAE 459
Cdd:PRK01156 429 NQRIRAL-RENLDELSRNMEMLngqsvcpvcgttlgeEKSNHIINHYNEkksrLEEKIREIEIEVKDIDEKIVDLKKRKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 460 RYLS-ELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEK-QSETVDELTGKNNqilkekDELKTQLYAALQ 537
Cdd:PRK01156 508 YLESeEINKSINEYNKIESARADLE-DIKIKINELKDKHDKYEEIKNRyKSLKLEDLDSKRT------SWLNALAVISLI 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 538 QIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIA 617
Cdd:PRK01156 581 DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIA 660
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462539046 618 ELK---KSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE 677
Cdd:PRK01156 661 EIDsiiPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
389-791 |
1.12e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 389 ERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADL--QISELTRHAEDATKQAERYLSELQ 466
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 467 QSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKEL 546
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 547 NDVLTKRALQEEELHSKEE----KLRDIKSHQADLELEVKNSLDTI---------------HRLESELKKQSKIQSQMKV 607
Cdd:COG4717 237 EAAALEERLKEARLLLLIAaallALLGLGGSLLSLILTIAGVLFLVlgllallflllarekASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANklAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLK 687
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE--LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 688 LERDVHQRELKDLTSSLQS--------VKTKHEQNIQELMKHFKKEKSEAENRIRTLKAE--SLEEKNMAKIHRGQLEKL 757
Cdd:COG4717 395 EEYQELKEELEELEEQLEEllgeleelLEALDEEELEEELEELEEELEELEEELEELREElaELEAELEQLEEDGELAEL 474
|
410 420 430
....*....|....*....|....*....|....
gi 2462539046 758 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEE 791
Cdd:COG4717 475 LQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
450-674 |
1.19e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 450 HAEDATKQAErylSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELK 529
Cdd:COG3883 13 FADPQIQAKQ---KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 530 TQLyAALQQIENLRKELNDVLTKRALQEeeLHSKEEKLRDIKSHQADLelevknsldtIHRLESELKKQSKIQSQMKVEK 609
Cdd:COG3883 90 ERA-RALYRSGGSVSYLDVLLGSESFSD--FLDRLSALSKIADADADL----------LEELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462539046 610 AHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKS 674
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
209-773 |
1.34e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 209 EAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlglmSLQLQEALKKQEAKADEHEgaiknklrQTETEKNQLEQEL 288
Cdd:PRK02224 193 KAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQ----REQARETRDEADEVLEEHE--------ERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 289 ELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEdwrfrrgVEREKQDLEKQMSDL 368
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE-------LEDRDEELRDRLEEC 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 369 RVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELT 448
Cdd:PRK02224 334 RVAA--QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 449 RHAEDATKQAERYLSELQQSEA-LKEEAEKRREDLKLKAQ----------------ESIRQWKLKHKKLERALEKQSETV 511
Cdd:PRK02224 412 DFLEELREERDELREREAELEAtLRTARERVEEAEALLEAgkcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 512 DEltgknnqiLKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRL 591
Cdd:PRK02224 492 EE--------VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 592 ESELKKQSkiqsqmkvekahleEEIAELKKSQAQDKAKLlemqESIKDLSAIRADLANKLAEEERAKKAvLKDLSDLTAQ 671
Cdd:PRK02224 564 EEEAEEAR--------------EEVAELNSKLAELKERI----ESLERIRTLLAAIADAEDEIERLREK-REALAELNDE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 672 AKSRDEETATIITQlkLERDVHQRELKDLTSSLQSVKTKHEQnIQELMKHFKKEKSEAENRIRTLKAEsLEEKNMAKIHR 751
Cdd:PRK02224 625 RRERLAEKRERKRE--LEAEFDEARIEEAREDKERAEEYLEQ-VEEKLDELREERDDLQAEIGAVENE-LEELEELRERR 700
|
570 580
....*....|....*....|..
gi 2462539046 752 GQLEKLKSQCDRLTEELTQNEN 773
Cdd:PRK02224 701 EALENRVEALEALYDEAEELES 722
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
240-570 |
1.44e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 240 RRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSE-----GSRETLLHQVEELRT 314
Cdd:COG4913 599 RSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWdeidvASAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 315 QLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKE 394
Cdd:COG4913 679 RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 395 --KAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFdtceaeRKHADLQISELTRHAEDatkqAERYLSELQQseaLK 472
Cdd:COG4913 759 lgDAVERELRENLEERIDALRARLNRAEEELERAMRAF------NREWPAETADLDADLES----LPEYLALLDR---LE 825
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 473 EE--AEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELtgknNQILKEKD---------ELKTQLYAALQQien 541
Cdd:COG4913 826 EDglPEYEERFKELLNENSIEFVADLLSKLRRAIREIKERIDPL----NDSLKRIPfgpgrylrlEARPRPDPEVRE--- 898
|
330 340 350
....*....|....*....|....*....|
gi 2462539046 542 LRKELNDVLTKRALQEEELH-SKEEKLRDI 570
Cdd:COG4913 899 FRQELRAVTSGASLFDEELSeARFAALKRL 928
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
176-578 |
1.85e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 176 IRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSlqlqEA 255
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE----EL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 256 LKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTK--------AEGDRKGLq 327
Cdd:PRK03918 375 ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKEL- 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 328 hqVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTR 407
Cdd:PRK03918 454 --LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 408 ELENGEKQQLQMLD-----------RLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLS-------ELQQSE 469
Cdd:PRK03918 532 EKLIKLKGEIKSLKkelekleelkkKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpfyneylELKDAE 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 470 ALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE-----TVDELTGKNNQILKEKDELKtQLYAALQQIENLRK 544
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEElekkySEEEYEELREEYLELSRELA-GLRAELEELEKRRE 690
|
410 420 430
....*....|....*....|....*....|....
gi 2462539046 545 ELNDVLTKRALQEEELHSKEEKLRDIKSHQADLE 578
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
486-680 |
1.87e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 486 AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEE 565
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL---GE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 566 KLRDIKSHQADLE-----LEVKNSLDTIHRLE----------SELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKL 630
Cdd:COG3883 91 RARALYRSGGSVSyldvlLGSESFSDFLDRLSalskiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462539046 631 LEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETA 680
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
248-976 |
2.58e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.97 E-value: 2.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 248 MSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSReTLLHQVEELRTQLTKAEGDRKGLQ 327
Cdd:TIGR00606 207 MELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNL-SKIMKLDNEIKALKSRKKQMEKDN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 328 HQVSQISKQQSNYQDEQGEDWRFRRGveREKQDLEKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKAHLASQVENLTR 407
Cdd:TIGR00606 286 SELELKMEKVFQGTDEQLNDLYHNHQ--RTVREKERELVDCQ---------RELEKLNKERRLLNQEKTELLVEQGRLQL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 408 ELENGEKQQLQMLDRLKEIQNHFDTCEAER-----KHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDL 482
Cdd:TIGR00606 355 QADRHQEHIRARDSLIQSLATRLELDGFERgpfseRQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 483 KLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLY------------AALQQIENLRKELNDVL 550
Cdd:TIGR00606 435 KKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERelskaeknslteTLKKEVKSLQNEKADLD 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 551 TKRALQEEELH--------------------SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKA 610
Cdd:TIGR00606 515 RKLRKLDQEMEqlnhhtttrtqmemltkdkmDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLA 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 611 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEE---ERAKKAVLKDLSDLtAQAKSRDEETATIITQLK 687
Cdd:TIGR00606 595 KLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEEsdlERLKEEIEKSSKQR-AMLAGATAVYSQFITQLT 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 688 LERD----VHQRELKDltsslqsvktkhEQNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDR 763
Cdd:TIGR00606 674 DENQsccpVCQRVFQT------------EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 764 LTEELTQNENENKKLKLKYQCLKDQLEEREKHIsieeEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFS 843
Cdd:TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL----GTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG 817
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 844 KDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQ 923
Cdd:TIGR00606 818 SDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV 897
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 2462539046 924 EQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALETSTQVALDHLESVPEKL 976
Cdd:TIGR00606 898 QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV 950
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
252-470 |
3.70e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.17 E-value: 3.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 252 LQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELE--LSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQ 329
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 330 VSQISKQQSNYQDEQGEDWRFR--RGVEREKQDLEKQMSDLRVQL--NFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSARYtpNHPDVIALRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462539046 406 TRELENGEKQQLQMLDRLKEIQNHFDTCEAErkhadlqISELTRHAEDATKQAERYLSELQQSEA 470
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAE-------LRRLEREVEVARELYESLLQRLEEARL 379
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
451-825 |
4.69e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 451 AEDATKQAERYLSELQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSetVDELTGKNNQILKEKDELKT 530
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEEL----EAELEELREELEKLEKLLQLLP--LYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 531 QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQ-ADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEK 609
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 610 AHLEEEIAELKKSQAQDKAKLL----------------------EMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSD 667
Cdd:COG4717 230 EQLENELEAAALEERLKEARLLlliaaallallglggsllslilTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 668 LTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQnIQELMKHFKKEKSEAENR--IRTLKAESLEEKN 745
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE-AEELEEELQLEELEQEIAalLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 746 MAKIHRGQLEKLKSQCDRLTEELTQNENENKKL--KLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETE 823
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGELEELleALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
..
gi 2462539046 824 QE 825
Cdd:COG4717 469 GE 470
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
434-769 |
6.09e-06 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 50.34 E-value: 6.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 434 EAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKlkaqESIRQWKLKHKKLERALEKQSETVDE 513
Cdd:COG5185 193 SELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPE----SELEDLAQTSDKLEKLVEQNTDLRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 514 LTGKNNQILKEKDELKTQLyaaLQQIENLRKELNDVlTKRALQEEELHSKEEKLR--DIKSHQADLELEVKNSLDtihRL 591
Cdd:COG5185 269 KLGENAESSKRLNENANNL---IKQFENTKEKIAEY-TKSIDIKKATESLEEQLAaaEAEQELEESKRETETGIQ---NL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 592 ESELKK-QSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQesikdLSAIRADLANKLAEEERAKKAVLKDLSDLTA 670
Cdd:COG5185 342 TAEIEQgQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDT-----IESTKESLDEIPQNQRGYAQEILATLEDTLK 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 671 QAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTK---------------HEQNIQELMKHFKKEKSEAENRIRT 735
Cdd:COG5185 417 AADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREadeesqsrleeaydeINRSVRSKKEDLNEELTQIESRVST 496
|
330 340 350
....*....|....*....|....*....|....
gi 2462539046 736 LKAEslEEKNMAKIHRgQLEKLKSQCDRLTEELT 769
Cdd:COG5185 497 LKAT--LEKLRAKLER-QLEGVRSKLDQVAESLK 527
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
185-476 |
6.82e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.12 E-value: 6.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 185 ELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELvERRQdqlglmslqlQEALKKQEAKAD 264
Cdd:pfam17380 328 EMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMREL-ERLQ----------MERQQKNERVRQ 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 265 EHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQqsnyqdeq 344
Cdd:pfam17380 397 ELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ-------- 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 345 gEDWRFRRGVEREKQDLEKQMSDlrvQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLK 424
Cdd:pfam17380 469 -EEERKRKKLELEKEKRDRKRAE---EQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRK 544
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2462539046 425 EIQNHfdtcEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAE 476
Cdd:pfam17380 545 QQEME----ERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
165-449 |
7.27e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 7.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 165 HQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRT-ERELVERRQD 243
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlEARLSHSRIP 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 244 QLGLMSLQLQEALKKQEAKADEHEGAIKNKlrqtETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDR 323
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIEARLREIEQKLNRL----TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 324 KGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLN-----FSAMASELEEVKRCMERKDKEKAHL 398
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSelkakLEALEEELSEIEDPKGEDEEIPEEE 950
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462539046 399 AS------QVENLTRELENGE-------KQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTR 449
Cdd:TIGR02169 951 LSledvqaELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
192-952 |
9.12e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 9.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 192 SDAETKRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIK 271
Cdd:TIGR00606 235 SSREIVKSYENELDPLKNRLKE---IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQ 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 272 NKLRQTETEKNQLEQELE---LSRRLLNQSEGSRET----LLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQ 344
Cdd:TIGR00606 312 RTVREKERELVDCQRELEklnKERRLLNQEKTELLVeqgrLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQ 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 345 GEDWR--FRRGVEREKQDLEKQMSDLRVQLNFSA-MASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLD 421
Cdd:TIGR00606 392 IKNFHtlVIERQEDEAKTAAQLCADLQSKERLKQeQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 422 RLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRqwKLKHKKLE 501
Cdd:TIGR00606 472 RILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT--KDKMDKDE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 502 RALEKQSETVDELTGK-----NNQIL--------KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLR 568
Cdd:TIGR00606 550 QIRKIKSRHSDELTSLlgyfpNKKQLedwlhsksKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 569 DIKSHQAdleLEVKnsldtIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQA-------QDKAKLLEMQESIKDLS 641
Cdd:TIGR00606 630 DVCGSQD---EESD-----LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQsccpvcqRVFQTEAELQEFISDLQ 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 642 AIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQ---RELKDLTSSLQSVKTKHEQNIQEL 718
Cdd:TIGR00606 702 SKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQkvnRDIQRLKNDIEEQETLLGTIMPEE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 719 ------------MKHFKKEKSEAENRIRTLKAESleEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLK 786
Cdd:TIGR00606 782 esakvcltdvtiMERFQMELKDVERKIAQQAAKL--QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 787 DQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVI--GKEIDAACKTFSKDSVEKLKVFSSGPDIHY--- 861
Cdd:TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIkdAKEQDSPLETFLEKDQQEKEELISSKETSNkka 939
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 862 ------------DPHRWLAESKTKLQWLCEE-LKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLLD 928
Cdd:TIGR00606 940 qdkvndikekvkNIHGYMKDIENKIQDGKDDyLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD 1019
|
810 820
....*....|....*....|....*....
gi 2462539046 929 EIHREKR-----DLLEETQRKDEEMGSLQ 952
Cdd:TIGR00606 1020 NLTLRKRenelkEVEEELKQHLKEMGQMQ 1048
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
452-629 |
9.77e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.39 E-value: 9.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 452 EDATKQAERYlSELQQSEAlKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDEltgKNNQILKEKDELKtq 531
Cdd:PRK12704 45 EEAKKEAEAI-KKEALLEA-KEEIHKLRNEF----EKELRERRNELQKLEKRLLQKEENLDR---KLELLEKREEELE-- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 532 lyaalQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADlelEVKNSLdtIHRLESELKKqskiqsqmkvEKAH 611
Cdd:PRK12704 114 -----KKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE---EAKEIL--LEKVEEEARH----------EAAV 173
|
170
....*....|....*...
gi 2462539046 612 LEEEIAELKKSQAQDKAK 629
Cdd:PRK12704 174 LIKEIEEEAKEEADKKAK 191
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
439-681 |
1.04e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 439 HADLQISELTRHAEDATKQAERYLSEL----QQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVDEL 514
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELdalqAELEELNEEYNELQAELE-ALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 515 ------TGKNNQIL------KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVK 582
Cdd:COG3883 92 aralyrSGGSVSYLdvllgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 583 NsldtihrLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVL 662
Cdd:COG3883 172 E-------LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
250
....*....|....*....
gi 2462539046 663 KDLSDLTAQAKSRDEETAT 681
Cdd:COG3883 245 SAAGAGAAGAAGAAAGSAG 263
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
200-725 |
1.17e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 200 LEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTET 279
Cdd:COG4913 237 LERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 280 EKNQLEQELELSRRLLNQSEGSR-ETLLHQVEELRTQLTKAEGDRKGLQHQVSQIskqQSNYQDEQGEDWRFRRGVEREK 358
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAAL---GLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 359 QDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELengekqqLQMLDRLkeiqnhfdtCEAERK 438
Cdd:COG4913 394 EALEEELEALEEAL--AEAEAALRDLRRELRELEAEIASLERRKSNIPARL-------LALRDAL---------AEALGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 439 HAD--------LQISELTRHAEDAtkqAERYLS----------------------------------ELQQSEALKEEAE 476
Cdd:COG4913 456 DEAelpfvgelIEVRPEEERWRGA---IERVLGgfaltllvppehyaaalrwvnrlhlrgrlvyervRTGLPDPERPRLD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 477 KRREDLKLKAQES-IRQWklkhkkLERALEKQS-----ETVDELTG-----------KNNQILKEKD---ELKTQLY--- 533
Cdd:COG4913 533 PDSLAGKLDFKPHpFRAW------LEAELGRRFdyvcvDSPEELRRhpraitragqvKGNGTRHEKDdrrRIRSRYVlgf 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 534 ---AALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADL------ELEVKNSLDTIHRLESELKkqskiqsq 604
Cdd:COG4913 607 dnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLaeyswdEIDVASAEREIAELEAELE-------- 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 605 mKVEKAHleEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIIT 684
Cdd:COG4913 679 -RLDASS--DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2462539046 685 QLKLERDVHQRELKDLTSSLQSVKTK---HEQNIQELMKHFKKE 725
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALRARlnrAEEELERAMRAFNRE 799
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
463-981 |
1.20e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 463 SELQQSEALKEEAEKRREDLKLKAQEsirqwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENL 542
Cdd:PRK02224 220 EEIERYEEQREQARETRDEADEVLEE--------HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEEL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 543 RKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKS 622
Cdd:PRK02224 292 EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 623 QAQDKAKLLEMQESIKDLsairadlanklaEEErakkavLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS 702
Cdd:PRK02224 372 LEEAREAVEDRREEIEEL------------EEE------IEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 703 SLQSVKTKHEQNiQELMKHFK--------------KEKSEAENRIRTLKAEsleeknmakihrgqLEKLKSQCDRLTEEL 768
Cdd:PRK02224 434 TLRTARERVEEA-EALLEAGKcpecgqpvegsphvETIEEDRERVEELEAE--------------LEDLEEEVEEVEERL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 769 TQNEnENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQEsilgviGKEIDAACKTFSKDSV- 847
Cdd:PRK02224 499 ERAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE------EKREAAAEAEEEAEEAr 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 848 EKLKVFSSGpdihydphrwLAESKTKLQWLcEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLL 927
Cdd:PRK02224 572 EEVAELNSK----------LAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462539046 928 DEIH-------REKRDLLEE--------TQRKDEEMGSLQDRVIALETStqvaLDHLESVPEKLSLLED 981
Cdd:PRK02224 641 AEFDearieeaREDKERAEEyleqveekLDELREERDDLQAEIGAVENE----LEELEELRERREALEN 705
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
418-647 |
1.77e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 418 QMLDRLKEIQNHFDTceaerkhadlqISELTRHAEDATKQAERyLSELQQSEALKEEAEKRREDLK--------LKAQES 489
Cdd:COG4913 222 DTFEAADALVEHFDD-----------LERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEylraalrlWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 490 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAA--------LQQIENLRKELNDVLTKRALQEEELH 561
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 562 SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQ----SKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESI 637
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAlaeaEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
250
....*....|.
gi 2462539046 638 KD-LSAIRADL 647
Cdd:COG4913 450 AEaLGLDEAEL 460
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
194-584 |
1.88e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 194 AETKRALEELtEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQdqlglMSLQLQEALKKQEAKADEHEGAIKNK 273
Cdd:PTZ00121 1530 AEEAKKADEA-KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKN-----MALRKAEEAKKAEEARIEEVMKLYEE 1603
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 274 LRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRG 353
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 354 VEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRlkeiqnhfdtc 433
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD----------- 1752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 434 EAERKHADLQISELTRHAEDATKQAERYLSE--LQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETV 511
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEelDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAI 1832
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462539046 512 DELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNS 584
Cdd:PTZ00121 1833 KEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNN 1905
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
218-576 |
2.06e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLR---QTETEKNQLEQELELSRRL 294
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRlfdEKQSEKDKKNKALAERKDS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 295 LNQsegsretllhqveelrtQLTKAEGDRKGLQHQVSQISKQQSNYQDE-QGEDWRFRRGVEREKQDLEKQMSDLRVQLn 373
Cdd:pfam12128 680 ANE-----------------RLNSLEAQLKQLDKKHQAWLEEQKEQKREaRTEKQAYWQVVEGALDAQLALLKAAIAAR- 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 374 FSAMASELEEVKRCMERKDKEK-------AHLASQVENLTRELENGEKQQLQMLdRLKEIQNHfdTCEAERKHADLQISE 446
Cdd:pfam12128 742 RSGAKAELKALETWYKRDLASLgvdpdviAKLKREIRTLERKIERIAVRRQEVL-RYFDWYQE--TWLQRRPRLATQLSN 818
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 447 LTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQseTVDELTGKNNQILKEKD 526
Cdd:pfam12128 819 IERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDA--NSEQAQGSIGERLAQLE 896
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 2462539046 527 ELKTQLYAALQQIENLRKELNDVLTKraLQEEELHSKEEKLRDIKSHQAD 576
Cdd:pfam12128 897 DLKLKRDYLSESVKKYVEHFKNVIAD--HSGSGLAETWESLREEDHYQND 944
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
271-948 |
2.22e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 271 KNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRF 350
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 351 RRGVErEKQDLEKQMSDLRVQLNFS----AMASELEEVKRCMERKDKEKAHLASQVENLTREL---ENGEKQQLQMLDRL 423
Cdd:TIGR00618 266 RARIE-ELRAQEAVLEETQERINRArkaaPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLmkrAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 424 KEIQNHFDTCEAERKHADLQISELtrhaedatKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERA 503
Cdd:TIGR00618 345 RLLQTLHSQEIHIRDAHEVATSIR--------EISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 504 LEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEElhSKEEKLRDIKSHQADLELEVKN 583
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE--QQLQTKEQIHLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 584 SLDTIHRLESELKKQSKIQSQmkveKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLK 663
Cdd:TIGR00618 495 RLLELQEEPCPLCGSCIHPNP----ARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 664 DLSDLTAQAKSRDEETATIITQLKLERDVHQRELKD-----LTSSLQSVKTKHEQNIQELMKHFKKEKSEAENRIRTLKA 738
Cdd:TIGR00618 571 SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAedmlaCEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHA 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 739 ESLEeknmaKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLL 818
Cdd:TIGR00618 651 LQLT-----LTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIEN 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 819 CLETE------QESILGVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLR 892
Cdd:TIGR00618 726 ASSSLgsdlaaREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLE 805
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 893 HQLMLCR---QQLRNLT-ENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEM 948
Cdd:TIGR00618 806 AEIGQEIpsdEDILNLQcETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLT 865
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
172-796 |
2.57e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 172 SSEQIRLGDDFNRELSRRSRSDAETKRALEELT---EKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLM 248
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLKKQQLLKQLRARIEELRaqeAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKM 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 249 SLQLQEALKKQEAKADEHEGAIKNKLRQT---ETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKG 325
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCK 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 326 ----LQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMAselEEVKRCMERKDKEKAHLASQ 401
Cdd:TIGR00618 401 eldiLQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE---KIHLQESAQSLKEREQQLQT 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 402 VENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISE---LTRHAEDATKQAERYLSELQQSEALKEEAEKR 478
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNpgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQ 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 479 REDLKLKAQEsIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRAlqee 558
Cdd:TIGR00618 558 RASLKEQMQE-IQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRL---- 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 559 ELHSKEEKLRDIKSHQADLELEVKNSLDTIH-RLESELKKQSKIQSQMKVEKA-HLEEEIAELKKSQAQDKAKLLEMQES 636
Cdd:TIGR00618 633 HLQQCSQELALKLTALHALQLTLTQERVREHaLSIRVLPKELLASRQLALQKMqSEKEQLTYWKEMLAQCQTLLRELETH 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 637 IKDLSAIRADLANKLAeeerAKKAVLKDLSDLTAQAKSRDEETATiiTQLKLERDVHQRELKDLTSSLQSVKTKHE---- 712
Cdd:TIGR00618 713 IEEYDREFNEIENASS----SLGSDLAAREDALNQSLKELMHQAR--TVLKARTEAHFNNNEEVTAALQTGAELSHlaae 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 713 -QNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIhrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEE 791
Cdd:TIGR00618 787 iQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCE---TLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQ 863
|
....*
gi 2462539046 792 REKHI 796
Cdd:TIGR00618 864 LTQEQ 868
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
408-992 |
3.11e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.30 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 408 ELENGEKQQLQMLDrlKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSE-LQQSEALKEEAEKRREDLKLkA 486
Cdd:pfam12128 283 ETSAELNQLLRTLD--DQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPSWQSELEN-L 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 487 QESIRQWKLKHKKLERALEKQ-----SETVDELTGKNNQ---ILKEKDELKTQLYAALQQIEN-LRKELNDVLTKRALQE 557
Cdd:pfam12128 360 EERLKALTGKHQDVTAKYNRRrskikEQNNRDIAGIKDKlakIREARDRQLAVAEDDLQALESeLREQLEAGKLEFNEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 558 EELHSK--EEKLR-DIKSHQADLELEVKNSLDTIHRLESELKKQSKiqsqmKVEKAHLEEEIAELKKSQAQDK-----AK 629
Cdd:pfam12128 440 YRLKSRlgELKLRlNQATATPELLLQLENFDERIERAREEQEAANA-----EVERLQSELRQARKRRDQASEAlrqasRR 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 630 LLEMQESIKDLSAIRADLANKLAEEERAKKAVLK---------------DLSDLTAQAKSRDEETATIITqLKLER---- 690
Cdd:pfam12128 515 LEERQSALDELELQLFPQAGTLLHFLRKEAPDWEqsigkvispellhrtDLDPEVWDGSVGGELNLYGVK-LDLKRidvp 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 691 ------DVHQRELKDLTSSLQSVKTKHEQNIQELM---KHFKKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEK----L 757
Cdd:pfam12128 594 ewaaseEELRERLDKAEEALQSAREKQAAAEEQLVqanGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKknkaL 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 758 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEArlQLKDQLLCLETEQESILGVIGKEIDA 837
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEG--ALDAQLALLKAAIAARRSGAKAELKA 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 838 aCKTFSKDSVEKLKVfssGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLF 917
Cdd:pfam12128 752 -LETWYKRDLASLGV---DPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQ 827
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 918 QQIERQEQ----LLDEIHREKRDLLEETQRKDEEMGSLQDRVIAL----ETSTQVALDHleSVPEKLSLLEDFKDFRDSC 989
Cdd:pfam12128 828 QQLARLIAdtklRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLatlkEDANSEQAQG--SIGERLAQLEDLKLKRDYL 905
|
...
gi 2462539046 990 SSS 992
Cdd:pfam12128 906 SES 908
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
527-682 |
4.48e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 4.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 527 ELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELK--KQSKIQSQ 604
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvRNNKEYEA 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462539046 605 MKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDL-SDLTAQAKSRDEETATI 682
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELeAELEELEAEREELAAKI 172
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
389-732 |
5.23e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 389 ERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQiSELTRhAEDATKQAERYLSELQQS 468
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAE-REIAE-LEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 469 EALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELND 548
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 549 VLTKRALQEEELHSKEEKLRDI-KSHQADLELEVKNSLDTIHRLESELKKQSKIQSQmkvEKAHLEEEIAELKKSQAQDK 627
Cdd:COG4913 771 LEERIDALRARLNRAEEELERAmRAFNREWPAETADLDADLESLPEYLALLDRLEED---GLPEYEERFKELLNENSIEF 847
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 628 akllemqesikdlsaiRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVH--QRELKDLTSSLQ 705
Cdd:COG4913 848 ----------------VADLLSKLRRAIREIKERIDPLNDSLKRIPFGPGRYLRLEARPRPDPEVRefRQELRAVTSGAS 911
|
330 340 350
....*....|....*....|....*....|.
gi 2462539046 706 ----SVKTKHEQNIQELMKHFKKEKSEAENR 732
Cdd:COG4913 912 lfdeELSEARFAALKRLIERLRSEEEESDRR 942
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
413-668 |
5.35e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 46.99 E-value: 5.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 413 EKQQLQMLDR-------LKEIQNHFdtceAERKHADLQISELTRHAEDATKQAERY---LSELQQSeALKE------EAE 476
Cdd:COG0497 140 PDAQRELLDAfagleelLEEYREAY----RAWRALKKELEELRADEAERARELDLLrfqLEELEAA-ALQPgeeeelEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 477 KRR----EDLKLKAQESIRQwkLKH---------KKLERALEKQSETVDELtgknnqilkekDELKTQLYAALQQIENLR 543
Cdd:COG0497 215 RRRlsnaEKLREALQEALEA--LSGgeggaldllGQALRALERLAEYDPSL-----------AELAERLESALIELEEAA 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 544 KELNDVLTKRALQEEELHSKEEKLRDIKS----HQADLElEVknsLDTIHRLESELKKQSkiqsqmkvekaHLEEEIAEL 619
Cdd:COG0497 282 SELRRYLDSLEFDPERLEEVEERLALLRRlarkYGVTVE-EL---LAYAEELRAELAELE-----------NSDERLEEL 346
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2462539046 620 KKSQAQDKAKLLEMQEsikDLSAIRADLANKLAeeerakKAVLKDLSDL 668
Cdd:COG0497 347 EAELAEAEAELLEAAE---KLSAARKKAAKKLE------KAVTAELADL 386
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
227-665 |
5.83e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 5.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 227 LEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAiknkLRQTETEKNQLEQELELSRRLLNQSEGSRETL- 305
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEE----YAELQEELEELEEELEELEAELEELREELEKLe 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 306 -LHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQM--SDLRVQLNFSAMASELE 382
Cdd:COG4717 123 kLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLeqLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 383 EVKRCMERKDKEKAHLASQVENLTRELENGEKQQL--QMLDRLKEIQNHFDT----CEAERKHADLQISELTRHAEDATK 456
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEaaALEERLKEARLLLLIaaalLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 457 QAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKhkKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAAL 536
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE--ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 537 QQ--IENLRKELNDVLTKRALQEEE----LHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELkkqskiqsqmkvEKA 610
Cdd:COG4717 361 EElqLEELEQEIAALLAEAGVEDEEelraALEQAEEYQELKEELEELEEQLEELLGELEELLEAL------------DEE 428
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 611 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLAN-----KLAEEERAKKAVLKDL 665
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgelaELLQELEELKAELREL 488
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
500-715 |
6.60e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.93 E-value: 6.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 500 LERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEEKLRDIKSHQADLEL 579
Cdd:PHA02562 193 IQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP---SAALNKLNTAAAKIKS 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 580 EVKnSLDTIHR--------------LESELKKQSKIQSQMKVekahLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRA 645
Cdd:PHA02562 270 KIE-QFQKVIKmyekggvcptctqqISEGPDRITKIKDKLKE----LQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKN 344
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462539046 646 DLANK---LAEEERAKKAVLKDLSDLTAQAKSRDEETATIitqlklerdvhQRELKDLTSSLQS-VKTKHEQNI 715
Cdd:PHA02562 345 KISTNkqsLITLVDKAKKVKAAIEELQAEFVDNAEELAKL-----------QDELDKIVKTKSElVKEKYHRGI 407
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
180-808 |
8.38e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 8.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 180 DDFNRELSRRSRSDAET-KRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEAlkk 258
Cdd:TIGR00606 393 KNFHTLVIERQEDEAKTaAQLCADLQSKERLKQEQ---ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL--- 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 259 qeakadehEGAIKNKLrqteteknQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRK---------GLQHQ 329
Cdd:TIGR00606 467 --------EGSSDRIL--------ELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKlrkldqemeQLNHH 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 330 VSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDL----RVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:TIGR00606 531 TTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHI 610
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 406 TRELENGEKQQLQMLDRLkeiqnhFDTCEAERKHADLQisELTRHAEDATKQ-------AERYLSELQQSEALKE----- 473
Cdd:TIGR00606 611 NNELESKEEQLSSYEDKL------FDVCGSQDEESDLE--RLKEEIEKSSKQramlagaTAVYSQFITQLTDENQsccpv 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 474 -----EAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELND 548
Cdd:TIGR00606 683 cqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR 762
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 549 VLTKRALQEEELHSKEEKLRDIKSHQADLELevknsldtIHRLESELKKQSKiqsqmKVEKAHLEEEIAELKKSQAQDKA 628
Cdd:TIGR00606 763 LKNDIEEQETLLGTIMPEEESAKVCLTDVTI--------MERFQMELKDVER-----KIAQQAAKLQGSDLDRTVQQVNQ 829
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 629 KLLEMQESIKDLSAiRADLANKLAEEERAKKAVLKD-----------LSDLTAQAKSRDEETATIITQLK-LERDVHQRe 696
Cdd:TIGR00606 830 EKQEKQHELDTVVS-KIELNRKLIQDQQEQIQHLKSktnelkseklqIGTNLQRRQQFEEQLVELSTEVQsLIREIKDA- 907
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 697 lKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENRIRTLKAESleeKNMAKIHRGQLEKLKSQCDRlteELTQNENENK 776
Cdd:TIGR00606 908 -KEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV---KNIHGYMKDIENKIQDGKDD---YLKQKETELN 980
|
650 660 670
....*....|....*....|....*....|..
gi 2462539046 777 KLKLkyqclkdQLEEREKHISIEEEHLRRMEE 808
Cdd:TIGR00606 981 TVNA-------QLEECEKHQEKINEDMRLMRQ 1005
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
198-548 |
8.48e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.97 E-value: 8.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 198 RALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERElvERRQDQLGLMSLQL-QEALKK-----QEAKADEHEgaiK 271
Cdd:PRK10929 55 NWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERD--EPRSVPPNMSTDALeQEILQVssqllEKSRQAQQE---Q 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 272 NKLRQTETEKNQLEQELELSRRLLN------QSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISkqqSNYQDEQG 345
Cdd:PRK10929 130 DRAREISDSLSQLPQQQTEARRQLNeierrlQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLS---ANNRQELA 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 346 edwRFRRGV-EREKQDLEKQMSDLRVQLNFSAMaselEEVKRCMERKDKekahLASQVENL----------TRELENGEK 414
Cdd:PRK10929 207 ---RLRSELaKKRSQQLDAYLQALRNQLNSQRQ----REAERALESTEL----LAEQSGDLpksivaqfkiNRELSQALN 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 415 QQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDAT-------KQAERyLSELQQSEALKEEAEKRR------ED 481
Cdd:PRK10929 276 QQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNalgealrAQVAR-LPEMPKPQQLDTEMAQLRvqrlryED 354
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462539046 482 LkLKAQESIRQWKLKH-----KKLERALEKQSETVDEL-----TGKNNQILkekdELkTQLYAALQQIENLRKELND 548
Cdd:PRK10929 355 L-LNKQPQLRQIRQADgqpltAEQNRILDAQLRTQRELlnsllSGGDTLIL----EL-TKLKVANSQLEDALKEVNE 425
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
210-814 |
9.69e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 9.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 210 AQKQEVvsDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKadEHEGAIKNKLRQTETEKNQLEQELE 289
Cdd:pfam12128 218 LNRQQV--EHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYK--SDETLIASRQEERQETSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 290 LSRRLLNQSegsretllhqVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfrrGVEREKQDLEkQMSDLR 369
Cdd:pfam12128 294 TLDDQWKEK----------RDELNGELSAADAAVAKDRSELEALEDQHGAFLDA---------DIETAAADQE-QLPSWQ 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 370 VQL-NFSAMASELEEVKRCMERK-DKEKAHLASQVENLTRELENGEKQQLQMLDRLK-EIQNHFDTCEAERKHadlQISE 446
Cdd:pfam12128 354 SELeNLEERLKALTGKHQDVTAKyNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLaVAEDDLQALESELRE---QLEA 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 447 LTRHAEDATKQAERYLSELQ--------------QSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVD 512
Cdd:pfam12128 431 GKLEFNEEEYRLKSRLGELKlrlnqatatpelllQLENFDERIERAREEQE-AANAEVERLQSELRQARKRRDQASEALR 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 513 ELTGKNNQILKEKDELKTQLYAALQQ-IENLRKELND-------VLTKRALQEEELH--------SKEEKLRDIKSH--- 573
Cdd:pfam12128 510 QASRRLEERQSALDELELQLFPQAGTlLHFLRKEAPDweqsigkVISPELLHRTDLDpevwdgsvGGELNLYGVKLDlkr 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 574 -----QADLELEVKNSLDtihRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLA 648
Cdd:pfam12128 590 idvpeWAASEEELRERLD---KAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEK 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 649 NKLAEE-ERAKKAVLKDLSDLTAQAK-----------SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQ 716
Cdd:pfam12128 667 DKKNKAlAERKDSANERLNSLEAQLKqldkkhqawleEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAK 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 717 ELMKHFKKEkseaenRIRTLKAESLEEKNMAKIHRG--QLEKLKSQCDRLTEELTQNEN-ENKKLKLKYQCLKDQLEERE 793
Cdd:pfam12128 747 AELKALETW------YKRDLASLGVDPDVIAKLKREirTLERKIERIAVRRQEVLRYFDwYQETWLQRRPRLATQLSNIE 820
|
650 660
....*....|....*....|..
gi 2462539046 794 KHIS-IEEEHLRRMEEARLQLK 814
Cdd:pfam12128 821 RAISeLQQQLARLIADTKLRRA 842
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
180-675 |
1.27e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 180 DDFNRELSRRSRSDAETKRALEELTEKLNEAQKQevVSDRVERRLQELEREMRTERELVERRQDQLGlmslQLQEALKKQ 259
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRA----RLEALLAAL 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 260 EAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGsretllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN 339
Cdd:COG4913 372 GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA-------ALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 340 YQD-----------------------EQGEDWR-----------------------FRRGVEREKqdlekqmsdLRVQLN 373
Cdd:COG4913 445 LRDalaealgldeaelpfvgelievrPEEERWRgaiervlggfaltllvppehyaaALRWVNRLH---------LRGRLV 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 374 FsamaselEEVKRCMERKDKEKAHLASqvenLTRELENGEKQQLQMLDRlkEIQNHFD--TCEAER--KHADLQISE--L 447
Cdd:COG4913 516 Y-------ERVRTGLPDPERPRLDPDS----LAGKLDFKPHPFRAWLEA--ELGRRFDyvCVDSPEelRRHPRAITRagQ 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 448 TRHAEDA-TKQAERYLSELQQseaLKEEAEKRREDLKLKAQEsirqwklkhkkLERALEKQSETVDELTgknnqilKEKD 526
Cdd:COG4913 583 VKGNGTRhEKDDRRRIRSRYV---LGFDNRAKLAALEAELAE-----------LEEELAEAEERLEALE-------AELD 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 527 ELKTQLyAALQQIENLRKELNDVLTkralQEEELHSKEEKLRDIKSHQADL-ELEvknslDTIHRLESELKKQSKIQSQM 605
Cdd:COG4913 642 ALQERR-EALQRLAEYSWDEIDVAS----AEREIAELEAELERLDASSDDLaALE-----EQLEELEAELEELEEELDEL 711
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 606 KVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSR 675
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRAR 781
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
392-612 |
1.29e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 392 DKEKAHLASQVENLTRELENGEKQQLQMLDRLkeiQNHFDTCEAERKHADLQISELTRHAEDATKQAERYlselqqSEAL 471
Cdd:PHA02562 187 DMKIDHIQQQIKTYNKNIEEQRKKNGENIARK---QNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP------SAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 472 KEEAEKRredLKLKAQesIRQWKLKHKKLE---------RALEKQSETVDELTGKNNQILKEKDELKTQlYAALQQIEN- 541
Cdd:PHA02562 258 NKLNTAA---AKIKSK--IEQFQKVIKMYEkggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTA-IDELEEIMDe 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462539046 542 ---LRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHL 612
Cdd:PHA02562 332 fneQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
153-644 |
1.51e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSR---------SDAETKRALEELTEKLNEAQKQEVVSDRVERR 223
Cdd:TIGR00618 342 EQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHihtlqqqktTLTQKLQSLCKELDILQREQATIDTRTSAFRD 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 224 LQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQE-----LELSRRLLNQS 298
Cdd:TIGR00618 422 LQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQEtrkkaVVLARLLELQE 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 299 E---------------------GSRETLLHQVEELRTQLTKAEGDRKG-LQHQVSQISKQQSNYQDEQGEDWRFRRGVER 356
Cdd:TIGR00618 502 EpcplcgscihpnparqdidnpGPLTRRMQRGEQTYAQLETSEEDVYHqLTSERKQRASLKEQMQEIQQSFSILTQCDNR 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 357 EKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKahLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAE 436
Cdd:TIGR00618 582 SKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK--LQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQER 659
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 437 RKHADLQISELTRHAEDATKQAERYL-SELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELT 515
Cdd:TIGR00618 660 VREHALSIRVLPKELLASRQLALQKMqSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARED 739
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 516 GKNNQILKEKDELKTQLYA--------------ALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEV 581
Cdd:TIGR00618 740 ALNQSLKELMHQARTVLKArteahfnnneevtaALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDIL 819
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462539046 582 KNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIR 644
Cdd:TIGR00618 820 NLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGIN 882
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
391-553 |
2.18e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.57 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 391 KDKEKAHLASQVENLTR--ELENGEKQQLQmlDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQS 468
Cdd:PRK09039 51 KDSALDRLNSQIAELADllSLERQGNQDLQ--DSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 469 EALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEkQSETVDEltGKNNQIlkekDELKTQLYAAL----QQIENLRK 544
Cdd:PRK09039 129 KQVSARALAQVELL----NQQIAALRRQLAALEAALD-ASEKRDR--ESQAKI----ADLGRRLNVALaqrvQELNRYRS 197
|
170
....*....|...
gi 2462539046 545 E----LNDVLTKR 553
Cdd:PRK09039 198 EffgrLREILGDR 210
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
355-712 |
2.30e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 355 EREKQDLEKQMSDLRVQlnfsamaSELEEVKRCMERKdkekahlasqvenltRELENGEKQQLQMLDRLKEIQNHFDTCE 434
Cdd:pfam17380 286 ERQQQEKFEKMEQERLR-------QEKEEKAREVERR---------------RKLEEAEKARQAEMDRQAAIYAEQERMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 435 AERkhadlqiseltrhaedatkqaERYLSELQQSEALKEEAEKRREDLklkAQESIRQWKLKHKKLERAlEKQSETVDEL 514
Cdd:pfam17380 344 MER---------------------ERELERIRQEERKRELERIRQEEI---AMEISRMRELERLQMERQ-QKNERVRQEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 515 TGKNNQILKEKdELKTQLYAALQQIENLRKElndvlTKRALQEEELHSKEEKLRDIKSHQADlELEVKNSLDTIHRLESE 594
Cdd:pfam17380 399 EAARKVKILEE-ERQRKIQQQKVEMEQIRAE-----QEEARQREVRRLEEERAREMERVRLE-EQERQQQVERLRQQEEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 595 LKKQSKIQSQMKVEKAHLEEEIAE-LKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAK 673
Cdd:pfam17380 472 RKRKKLELEKEKRDRKRAEEQRRKiLEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER 551
|
330 340 350
....*....|....*....|....*....|....*....
gi 2462539046 674 SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHE 712
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-415 |
2.40e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 180 DDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQ 259
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 260 EAkadehegAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN 339
Cdd:COG4942 103 KE-------ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462539046 340 YQDEQGEdwrfrrgVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQ 415
Cdd:COG4942 176 LEALLAE-------LEEERAALEALKAERQKLLA--RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
210-458 |
2.47e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 210 AQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGlmslQLQEALKKQEAKadehegaiknkLRQTETEKNQLEQELE 289
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEK----ALLKQLAALERR-----------IAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 290 LSRRLLNQSEGSRETLLHQVEELRTQLTK--AEGDRKGLQHQVSQISKQQSNYQDEqgedwRFRRGVEREKQDLEKQMSD 367
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAEllRALYRLGRQPPLALLLSPEDFLDAV-----RRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 368 LRVQLNfsamasELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRL----KEIQNHFDTCEAERKHADLQ 443
Cdd:COG4942 155 LRADLA------ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLekelAELAAELAELQQEAEELEAL 228
|
250
....*....|....*
gi 2462539046 444 ISELTRHAEDATKQA 458
Cdd:COG4942 229 IARLEAEAAAAAERT 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
490-700 |
3.29e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 490 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT-----QLYAALQQIENLRKELNDVLTKRALQ--EEELHS 562
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDDLERAHEALEDAREQIELlepirELAERYAAARERLAELEYLRAALRLWfaQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 563 KEEKLRDIKSHQADLELEV---KNSLDTIHRLESELKKQskIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKD 639
Cdd:COG4913 293 LEAELEELRAELARLEAELerlEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462539046 640 LSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDL 700
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
218-567 |
4.19e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGA------IKNKLRQTET-EKNQLEQElEL 290
Cdd:COG3096 281 RELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAsdhlnlVQTALRQQEKiERYQEDLE-EL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 291 SRRLLNQSEgsretllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQdeQGEDWRFRRGVEREK--QDLEK----- 363
Cdd:COG3096 360 TERLEEQEE--------VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQ--QALDVQQTRAIQYQQavQALEKaralc 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 364 QMSDLRV------QLNFSAMASELEEVKRCMERK-DKEKAHlASQ-------VENLTRELENGE--KQQLQMLDRLKEIQ 427
Cdd:COG3096 430 GLPDLTPenaedyLAAFRAKEQQATEEVLELEQKlSVADAA-RRQfekayelVCKIAGEVERSQawQTARELLRRYRSQQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 428 NHFDTCEA-ERKHADL-----QISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwklkHKKLE 501
Cdd:COG3096 509 ALAQRLQQlRAQLAELeqrlrQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQ----RSELR 584
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462539046 502 RALEKQSETVDELTGKNNQILKEKD---ELKTQLYAAL---QQIENLRKELNDVLTKRALQEEELHSKEEKL 567
Cdd:COG3096 585 QQLEQLRARIKELAARAPAWLAAQDaleRLREQSGEALadsQEVTAAMQQLLEREREATVERDELAARKQAL 656
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
443-629 |
4.19e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 44.03 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 443 QISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwKLKHKKLERALEKQSEtvdELTGKNNQIL 522
Cdd:PRK09510 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ-AEEAAKQAALKQKQAE---EAAAKAAAAA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 523 KEK-DELKTQLYAALQQIENLRKELNDVLTKrALQEEELHSKEEKLRDIKshqADLELEVKNSLDTIHRLESELKKQSKI 601
Cdd:PRK09510 146 KAKaEAEAKRAAAAAKKAAAEAKKKAEAEAA-KKAAAEAKKKAEAEAAAK---AAAEAKKKAEAEAKKKAAAEAKKKAAA 221
|
170 180
....*....|....*....|....*...
gi 2462539046 602 QSQMKVEKAHLEEEIAELKKSQAQDKAK 629
Cdd:PRK09510 222 EAKAAAAKAAAEAKAAAEKAAAAKAAEK 249
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
221-817 |
4.22e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 4.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 221 ERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGA------IKNKLRQTETEKNQLEQELELSRRL 294
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATrhlcnlLKETCARSAEKTKKYEYEREETRQV 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 295 LNQSEGSRETLLHQVEELRTQltkAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfrrgVEREKQDLEKQMSDLRVQLNF 374
Cdd:pfam05483 185 YMDLNNNIEKMILAFEELRVQ---AENARLEMHFKLKEDHEKIQHLEEE----------YKKEINDKEKQVSLLLIQITE 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 375 SamaseleevkrcmERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFdTCEAERKHADLQISELTRHA-ED 453
Cdd:pfam05483 252 K-------------ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHL-TKELEDIKMSLQRSMSTQKAlEE 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 454 ATKQAERYLSEL-QQSEALKEEAEKRR-----------------EDLKLKAQESIRQWKLKHKKLERALEKQSETVDELT 515
Cdd:pfam05483 318 DLQIATKTICQLtEEKEAQMEELNKAKaahsfvvtefeattcslEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMT 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 516 GKNNQILKEKDELKT------QLYAALQQIENLRKEL----NDVLTKRALQEEELH-----------SKEEKLRDIKSHQ 574
Cdd:pfam05483 398 KFKNNKEVELEELKKilaedeKLLDEKKQFEKIAEELkgkeQELIFLLQAREKEIHdleiqltaiktSEEHYLKEVEDLK 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 575 ADLELE-VKNSLDTIH--RLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQdkaklleMQESIKDLSAIRADLANKL 651
Cdd:pfam05483 478 TELEKEkLKNIELTAHcdKLLLENKELTQEASDMTLELKKHQEDIINCKKQEER-------MLKQIENLEEKEMNLRDEL 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 652 aeeeRAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFK--KEKSEA 729
Cdd:pfam05483 551 ----ESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKalKKKGSA 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 730 ENRirtlkaesleEKNMAKIHRGQLEKLKSQCDRLTEELTqnENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEA 809
Cdd:pfam05483 627 ENK----------QLNAYEIKVNKLELELASAKQKFEEII--DNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEI 694
|
....*...
gi 2462539046 810 RLQLKDQL 817
Cdd:pfam05483 695 DKRCQHKI 702
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
183-569 |
4.56e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 4.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 183 NRELSRRSRSDAETKRalEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALkkqeak 262
Cdd:PRK02224 347 LREDADDLEERAEELR--EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR------ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 263 adEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQS---------EGSreTLLHQVEELRTQLTKAEGDRKGLQHQVSQI 333
Cdd:PRK02224 419 --EERDELREREAELEATLRTARERVEEAEALLEAGkcpecgqpvEGS--PHVETIEEDRERVEELEAELEDLEEEVEEV 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 334 SKQQSNYQDEQGEDWRFRRGVEReKQDLEKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKAHLASQVENLTRELENGE 413
Cdd:PRK02224 495 EERLERAEDLVEAEDRIERLEER-REDLEELIAERR---------ETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 414 KQQLQMLDRLKEIQNHFDTCEAERKHADlQISELTRHAEDATKQAERY------LSEL--QQSEALKEEAEKRREDLKLK 485
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLrekreaLAELndERRERLAEKRERKRELEAEF 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 486 AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKtqlyAALQQIENLRKELnDVLTKRALQEEELHSKEE 565
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE----NELEELEELRERR-EALENRVEALEALYDEAE 718
|
....
gi 2462539046 566 KLRD 569
Cdd:PRK02224 719 ELES 722
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
251-796 |
5.26e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 5.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 251 QLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEElRTQLTKAEGDRKGLQHQV 330
Cdd:pfam05483 78 RLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEE-EIQENKDLIKENNATRHL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 331 SQISKQQSNYQDEQGEDWRFRRGVERE-KQDLEKQMSdlRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTREL 409
Cdd:pfam05483 157 CNLLKETCARSAEKTKKYEYEREETRQvYMDLNNNIE--KMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKE 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 410 ENGEKQQLQMLdrlkeiqnHFDTCEAERKHADLQIseLTRHAEDATKQAERYLSelQQSEALKEEAEKRR------EDLK 483
Cdd:pfam05483 235 INDKEKQVSLL--------LIQITEKENKMKDLTF--LLEESRDKANQLEEKTK--LQDENLKELIEKKDhltkelEDIK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 484 LKAQESIRqwklKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLtKRALQEEELHSK 563
Cdd:pfam05483 303 MSLQRSMS----TQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELL-RTEQQRLEKNED 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 564 EEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQEsiKDLSAI 643
Cdd:pfam05483 378 QLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQARE--KEIHDL 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 644 RADLANKLAEEERAKKAVlKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVK------TKHEQNIQE 717
Cdd:pfam05483 456 EIQLTAIKTSEEHYLKEV-EDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQediincKKQEERMLK 534
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462539046 718 LMKHFKKEKSEAENRIRTLKAESLEEKNMAKIhrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHI 796
Cdd:pfam05483 535 QIENLEEKEMNLRDELESVREEFIQKGDEVKC---KLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNI 610
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
549-744 |
5.85e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 549 VLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKA 628
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 629 KLLE----MQESIKDLSAI--------------RADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLER 690
Cdd:COG3883 87 ELGEraraLYRSGGSVSYLdvllgsesfsdfldRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462539046 691 DVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENRIRTLKAESLEEK 744
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
371-529 |
6.13e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 6.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 371 QLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEiqnhfdtcEAERKHADLqiseltrh 450
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE--------EAEKEAQQA-------- 578
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462539046 451 AEDATKQAERYLSELQQSEALKEEAEKRREdlklkAQESIRQWKLKHKKLERALEKQSETVDEltgknnqiLKEKDELK 529
Cdd:PRK00409 579 IKEAKKEADEIIKELRQLQKGGYASVKAHE-----LIEARKRLNKANEKKEKKKKKQKEKQEE--------LKVGDEVK 644
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
600-963 |
6.17e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 6.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 600 KIQSQMKVEKAHLEEEIAE--LKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE 677
Cdd:pfam02463 146 IIAMMKPERRLEIEEEAAGsrLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEY 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 678 ETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKL 757
Cdd:pfam02463 226 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 758 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESIL--------- 828
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLakkkleser 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 829 ---GVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNL 905
Cdd:pfam02463 386 lssAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462539046 906 TENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALETSTQ 963
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
608-792 |
6.44e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 6.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQL- 686
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALy 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 687 -------KLERDVHQRELKDLTSSLQSVKTKHEQNiQELMKHFKKEKSEAEN---RIRTLKAESLEEKNMAKIHRGQLEK 756
Cdd:COG3883 97 rsggsvsYLDVLLGSESFSDFLDRLSALSKIADAD-ADLLEELKADKAELEAkkaELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190
....*....|....*....|....*....|....*.
gi 2462539046 757 LKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER 792
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
469-743 |
6.86e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.88 E-value: 6.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 469 EALKEEAEKRREDL-KLKAQESIRQWKLKHKKLERALEKQSETvdeltgknnqilKEKDELKTQlyaalqqienlRKELN 547
Cdd:PTZ00108 1105 EKLNAELEKKEKELeKLKNTTPKDMWLEDLDKFEEALEEQEEV------------EEKEIAKEQ-----------RLKSK 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 548 DVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDK 627
Cdd:PTZ00108 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVK 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 628 AKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSV 707
Cdd:PTZ00108 1242 RLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAAL 1321
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462539046 708 KTKHEQNI---------QELMKHFKKEKSEAENRIRTLKAESLEE 743
Cdd:PTZ00108 1322 KKKKKSEKktarkkkskTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
252-807 |
8.31e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 8.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 252 LQEALKKQEAKADEHEGA-IKNKLRQTETEKNQLeqelelsrrllnqSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQV 330
Cdd:TIGR01612 701 LKSKIDKEYDKIQNMETAtVELHLSNIENKKNEL-------------LDIIVEIKKHIHGEINKDLNKILEDFKNKEKEL 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 331 SQISKQQSNYQDEQGEdwrfrrgverekqdLEKQMSDLRVQLN--FSAMASELEEVKRCMErKDKEKAHLASQVENLTRE 408
Cdd:TIGR01612 768 SNKINDYAKEKDELNK--------------YKSKISEIKNHYNdqINIDNIKDEDAKQNYD-KSKEYIKTISIKEDEIFK 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 409 LENGEK-QQLQMLDRLKEIQNHFDTCEAERKHADLQISELTR--HAEDATKQAERYLSELQQSEALKEEAEKRRED---- 481
Cdd:TIGR01612 833 IINEMKfMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNkiKAEISDDKLNDYEKKFNDSKSLINEINKSIEEeyqn 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 482 ----------LKL--KAQESIRQWKLKHKKLERALEKQSETVDE---------------LTGKNNQILKEKDELKTQLYA 534
Cdd:TIGR01612 913 intlkkvdeyIKIceNTKESIEKFHNKQNILKEILNKNIDTIKEsnlieksykdkfdntLIDKINELDKAFKDASLNDYE 992
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 535 A-----LQQIENLRKEL-----NDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSL-DTIHRLESELKKQSKIQS 603
Cdd:TIGR01612 993 AknnelIKYFNDLKANLgknkeNMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIyNIIDEIEKEIGKNIELLN 1072
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 604 QMKVEKAhleeEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEE-ERAKKAVLKDLSDLTAQAKSRDEETATI 682
Cdd:TIGR01612 1073 KEILEEA----EINITNFNEIKEKLKHYNFDDFGKEENIKYADEINKIKDDiKNLDQKIDHHIKALEEIKKKSENYIDEI 1148
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 683 ITQL-KLE----RDVHQRELKDLTSSLQSVKTK--HEQNIQELMKHFKKEKSEAENrirtlKAESLEEKNMAKIHRGQ-L 754
Cdd:TIGR01612 1149 KAQInDLEdvadKAISNDDPEEIEKKIENIVTKidKKKNIYDEIKKLLNEIAEIEK-----DKTSLEEVKGINLSYGKnL 1223
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462539046 755 EKLKsqCDRLTEELTQNENENKKLKLKYQCL---KDQLEEREKHISIEEEHLRRME 807
Cdd:TIGR01612 1224 GKLF--LEKIDEEKKKSEHMIKAMEAYIEDLdeiKEKSPEIENEMGIEMDIKAEME 1277
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
465-616 |
9.89e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.16 E-value: 9.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 465 LQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELtgknnqilkEKDELKTQLYAALQQIENLRK 544
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR---------EREELQREEERLVQKEEQLDA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 545 ELNDVltkrALQEEELHSKEEKL------RDIKSHQADLELEVKNSLDT-------IHRLESELKKQSKIQSQMKVEKAH 611
Cdd:PRK12705 96 RAEKL----DNLENQLEEREKALsareleLEELEKQLDNELYRVAGLTPeqarkllLKLLDAELEEEKAQRVKKIEEEAD 171
|
....*
gi 2462539046 612 LEEEI 616
Cdd:PRK12705 172 LEAER 176
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
586-792 |
1.08e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 586 DTIHRLESELK----KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKK-- 659
Cdd:PHA02562 174 DKIRELNQQIQtldmKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEdp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 660 -AVLKDLSDLTAQAKSRDEE-----------------TATIITQLKLERDVHQReLKDLTSSLQSVKTKHEQnIQELMKH 721
Cdd:PHA02562 254 sAALNKLNTAAAKIKSKIEQfqkvikmyekggvcptcTQQISEGPDRITKIKDK-LKELQHSLEKLDTAIDE-LEEIMDE 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462539046 722 F---KKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER 792
Cdd:PHA02562 332 FneqSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
695-994 |
1.21e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 695 RELKDLTSSLQSVKTKHEQNIQELMKhFKKEKSEAEN----RIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQ 770
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLER-LRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 771 NENENKKLKLKYQCLKDQLEEREKHISieeehlRRMEEARLQLKDQLLCLETEQESILGVIG---KEIDAACKTFSKDSV 847
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIK------DLGEEEQLRVKEKIGELEAEIASLERSIAekeRELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 848 EKLKVFSSGPDIHYDPHRW----------LAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKES---ELQ 914
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEErkrrdklteeYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINElkrELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 915 CLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALETSTQVALDHLESVPEKLS-LLEDFKDFRDSCSSSE 993
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYdLKEEYDRVEKELSKLQ 489
|
.
gi 2462539046 994 R 994
Cdd:TIGR02169 490 R 490
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
484-770 |
1.51e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 484 LKAQESIRQWKLKHKKLERALEKQSETVDELTGknnqilkEKDELKTQLYAALQQIENLRKELND------VLTKRALQe 557
Cdd:PRK04863 344 LRQQEKIERYQADLEELEERLEEQNEVVEEADE-------QQEENEARAEAAEEEVDELKSQLADyqqaldVQQTRAIQ- 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 558 eeLHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSK----IQSQMKVEKAHLE--EEIAEL--------KKSQ 623
Cdd:PRK04863 416 --YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEellsLEQKLSVAQAAHSqfEQAYQLvrkiagevSRSE 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 624 AQDKAK-LLEMQESIKDLSAIRADLANKLAEEER--AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDL 700
Cdd:PRK04863 494 AWDVAReLLRRLREQRHLAEQLQQLRMRLSELEQrlRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSES 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 701 TSSLQSVKTKHEQNIQELMKHFKKEKS---------EAENRIRTLKAESLEEKNM--------------AKIHRGQLEKL 757
Cdd:PRK04863 574 VSEARERRMALRQQLEQLQARIQRLAArapawlaaqDALARLREQSGEEFEDSQDvteymqqllerereLTVERDELAAR 653
|
330
....*....|...
gi 2462539046 758 KSQCDRLTEELTQ 770
Cdd:PRK04863 654 KQALDEEIERLSQ 666
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
199-447 |
1.56e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 199 ALEELTEKLNEAQkqEVVSDRVERRLQELEREMRTERE------------------------------LVERRQDQLGLM 248
Cdd:PRK04863 356 DLEELEERLEEQN--EVVEEADEQQEENEARAEAAEEEvdelksqladyqqaldvqqtraiqyqqavqALERAKQLCGLP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 249 SLQL------QEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGS------RETLLH--------- 307
Cdd:PRK04863 434 DLTAdnaedwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSeawdvaRELLRRlreqrhlae 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 308 QVEELRTQLTKAEGD---RKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQlnFSAMASELEEV 384
Cdd:PRK04863 514 QLQQLRMRLSELEQRlrqQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARER--RMALRQQLEQL 591
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462539046 385 KRCMER-KDKEKAHLASQvENLTR-------ELENGE---KQQLQMLDRLKEIQNHFDTCEAERKHADLQISEL 447
Cdd:PRK04863 592 QARIQRlAARAPAWLAAQ-DALARlreqsgeEFEDSQdvtEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
496-824 |
1.60e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 496 KHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQA 575
Cdd:pfam17380 238 RRKESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRK 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 576 DLELEVKNsldtihrlESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRaDLANKLAEEE 655
Cdd:pfam17380 318 LEEAEKAR--------QAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMR-ELERLQMERQ 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 656 RAKKAVLKDLsdltaqaksrdeETATIITQLKLERdvhQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENRIRT 735
Cdd:pfam17380 389 QKNERVRQEL------------EAARKVKILEEER---QRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 736 LKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLklkyqcLKDQLEEREKHIsIEEEHLRRMEEARLQLKD 815
Cdd:pfam17380 454 EEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKI------LEKELEERKQAM-IEEERKRKLLEKEMEERQ 526
|
....*....
gi 2462539046 816 QLLCLETEQ 824
Cdd:pfam17380 527 KAIYEEERR 535
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
495-802 |
1.78e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 495 LKHKKLERALEKQSETVDELTGKNNQIlkekDELKTQLYAALQQIENLRKELNDvltkralqeeelhsKEEKLRDIKSHQ 574
Cdd:PRK01156 159 LEINSLERNYDKLKDVIDMLRAEISNI----DYLEEKLKSSNLELENIKKQIAD--------------DEKSHSITLKEI 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 575 ADLELEVKNSLDTIHRLESELKKQSKIQSqmkvEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEE 654
Cdd:PRK01156 221 ERLSIEYNNAMDDYNNLKSALNELSSLED----MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNY 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 655 ERAKKAVLKDLSDLTAQAKSRDEETATIITQLK----LERD-----VHQRELKDLTSSLQSVKTkHEQNIQELMKHFKKE 725
Cdd:PRK01156 297 INDYFKYKNDIENKKQILSNIDAEINKYHAIIKklsvLQKDyndyiKKKSRYDDLNNQILELEG-YEMDYNSYLKSIESL 375
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462539046 726 KSEAENRIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEH 802
Cdd:PRK01156 376 KKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQ 452
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
195-666 |
1.81e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 195 ETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKL 274
Cdd:pfam12128 461 ELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFL 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 275 RqteTEKNQLEQELE--LSRRLL---------NQSEGSRETLLHQV----------------EELRTQLTKAEGDRKGLQ 327
Cdd:pfam12128 541 R---KEAPDWEQSIGkvISPELLhrtdldpevWDGSVGGELNLYGVkldlkridvpewaaseEELRERLDKAEEALQSAR 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 328 HQVSQISKQQSNYQDEQGEdwrFRRGVEREKQDLEKqmSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTR 407
Cdd:pfam12128 618 EKQAAAEEQLVQANGELEK---ASREETFARTALKN--ARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLK 692
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 408 ELENGEKQQLQmldrlkEIQNHFDTCEAERKHADLQISELTRHAEDATKQA--ERYLSELQQSEALKEEaekRREDLKLK 485
Cdd:pfam12128 693 QLDKKHQAWLE------EQKEQKREARTEKQAYWQVVEGALDAQLALLKAAiaARRSGAKAELKALETW---YKRDLASL 763
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 486 AQESIRQWKLK------HKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNdvltkralqeee 559
Cdd:pfam12128 764 GVDPDVIAKLKreirtlERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLA------------ 831
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 560 lhskeEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSqmKVEKAHLEEEIAELKKSQAQDKAKLlemqesiKD 639
Cdd:pfam12128 832 -----RLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMS--KLATLKEDANSEQAQGSIGERLAQL-------ED 897
|
490 500
....*....|....*....|....*..
gi 2462539046 640 LSAIRADLANKLAEEERAKKAVLKDLS 666
Cdd:pfam12128 898 LKLKRDYLSESVKKYVEHFKNVIADHS 924
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
608-825 |
1.82e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLK 687
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 688 LERDVHQRELKDLTSSLQSVKTK---HEQNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIhRGQLEKLKSQCDRL 764
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL-RAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462539046 765 TEELTQNENENKKLKLKYQCLKDQLEEREKHisiEEEHLRRMEEARLQLKDQLLCLETEQE 825
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAE---LAAELAELQQEAEELEALIARLEAEAA 237
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
194-554 |
1.89e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 194 AETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNK 273
Cdd:COG4717 135 EALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 274 LRQTETEKNQLEQELE-LSRRLLNQSEGSR-----------------ETLLHQVEELRTQLTKAEGDRKGLQHQVSQI-S 334
Cdd:COG4717 215 LEEAQEELEELEEELEqLENELEAAALEERlkearlllliaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLlA 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 335 KQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAmaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEK 414
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSP--EELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 415 QQL---------QMLDRLKEIQNHFDTCEAERKHADLQISEL--TRHAEDATKQAERYLSELQQSEALKEEAEKRREDLK 483
Cdd:COG4717 373 AALlaeagvedeEELRAALEQAEEYQELKEELEELEEQLEELlgELEELLEALDEEELEEELEELEEELEELEEELEELR 452
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462539046 484 LKAQEsiRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRA 554
Cdd:COG4717 453 EELAE--LEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERA 521
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
349-994 |
2.07e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 349 RFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQN 428
Cdd:TIGR00606 190 TLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDN 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 429 HFDTCEAERKHADLQISELTRHAEDATKQAErylselqqsEALKEEAEKRREDLKLKAQESIR-QWKLKHKKLERALEKQ 507
Cdd:TIGR00606 270 EIKALKSRKKQMEKDNSELELKMEKVFQGTD---------EQLNDLYHNHQRTVREKERELVDcQRELEKLNKERRLLNQ 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 508 SETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELnDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDT 587
Cdd:TIGR00606 341 EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEL-DGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQS 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 588 IHRLESElkKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDlsairadlANKLAEEERAKKAVLKDLSD 667
Cdd:TIGR00606 420 KERLKQE--QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS--------SDRILELDQELRKAERELSK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 668 LtaqaksrdEETATIITQLKLERDVhQRELKDLTSSLQSVKTK-----HEQNIQELMKHFKKEKSEAENRIRTLKAESLE 742
Cdd:TIGR00606 490 A--------EKNSLTETLKKEVKSL-QNEKADLDRKLRKLDQEmeqlnHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSD 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 743 EKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQclkdQLEEREKHISIEEEhlrRMEEARLQLKDQLL--CL 820
Cdd:TIGR00606 561 ELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELA----SLEQNKNHINNELE---SKEEQLSSYEDKLFdvCG 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 821 ETEQESILGVIGKEIDAACKTFSKDSVeKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQ 900
Cdd:TIGR00606 634 SQDEESDLERLKEEIEKSSKQRAMLAG-ATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLK 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 901 QLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALETSTQVALDHLESVPEKLSLLE 980
Cdd:TIGR00606 713 STESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT 792
|
650
....*....|....
gi 2462539046 981 DFKDFRDSCSSSER 994
Cdd:TIGR00606 793 IMERFQMELKDVER 806
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
536-974 |
2.10e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 536 LQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLE-- 613
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEel 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 614 -EEIAELKKSQAQDKAKLLEMQESIKDLSairaDLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDV 692
Cdd:PRK03918 237 kEEIEELEKELESLEGSKRKLEEKIRELE----ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 693 hQRELKDLTSSLQSVKTKHEQ--NIQELMKHFKKEKSEAENRIRTLKaESLEEKNMAKIHRGQLEKLKSQCDRLTEEltq 770
Cdd:PRK03918 313 -EKRLSRLEEEINGIEERIKEleEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTPE--- 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 771 nenenkKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLEtEQESILGVIGKEIDaacktfskdsvekl 850
Cdd:PRK03918 388 ------KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK-KAKGKCPVCGRELT-------------- 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 851 kvfssgpdiHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNltENKESELQCLFQQIERQEQLLDEI 930
Cdd:PRK03918 447 ---------EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK--ESELIKLKELAEQLKELEEKLKKY 515
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 2462539046 931 HrekrdlLEETQRKDEEMGSLQDRVIALETSTQVALDHLESVPE 974
Cdd:PRK03918 516 N------LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE 553
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
456-947 |
2.25e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 456 KQAERYLSELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVDELtgknnqilkekdELKTQLYAA 535
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYA-ELQEELEELEEELEELEAELEELREELEKL------------EKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 536 LQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLElEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEE 615
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 616 IAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKdLSDLTAQAKSRDEETATIITQLKLERDVhqr 695
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAA-LLALLGLGGSLLSLILTIAGVLFLVLGL--- 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 696 eLKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIHR------GQLEKLKSQCDRLTEELT 769
Cdd:COG4717 286 -LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLelldriEELQELLREAEELEEELQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 770 QNENENKKLKLKYQCLKDQLEEREKHISIEEEhLRRMEEARLQLKDQLLCLETEQESILGVIGKEidaacktfskdsvek 849
Cdd:COG4717 365 LEELEQEIAALLAEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEE--------------- 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 850 lkvfssgpdihydphrwlaESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKesELQCLFQQIERQEQLLDE 929
Cdd:COG4717 429 -------------------ELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG--ELAELLQELEELKAELRE 487
|
490 500
....*....|....*....|....
gi 2462539046 930 IHREK------RDLLEETQRKDEE 947
Cdd:COG4717 488 LAEEWaalklaLELLEEAREEYRE 511
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
494-660 |
2.39e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 494 KLKHKKLERALEKQSETVDELTGKNNQILKEKdelktqLYAALQQIENLRKELNDVLTKR----ALQEEELHSKEEKLRD 569
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEA------LLEAKEEIHKLRNEFEKELRERrnelQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 570 IKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAqdKAKLLE-MQESIKDLSAIRADLA 648
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA--KEILLEkVEEEARHEAAVLIKEI 178
|
170
....*....|..
gi 2462539046 649 NKLAEEERAKKA 660
Cdd:PRK12704 179 EEEAKEEADKKA 190
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
343-965 |
2.54e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 343 EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQL--QML 420
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLlkQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 421 DRLKEIQNHFDTCEAERKHADLQ-----ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLkLKAQESIRQWKL 495
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRArkaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAH-VKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 496 KHKKLERALEKQSETVDELTGKNNQILKEKDELK-----TQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDI 570
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhihtlQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 571 KSHqadlelevknsldtihrleseLKKQSKIQsqmKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANK 650
Cdd:TIGR00618 426 LAH---------------------AKKQQELQ---QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQI 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 651 LAEEERAKKAVLKDLSDLTAQAKSRDEETA--TIITQLKLERDVHQR---ELKDLTSSLQSVKTKHEQNIQELMKHFKKE 725
Cdd:TIGR00618 482 HLQETRKKAVVLARLLELQEEPCPLCGSCIhpNPARQDIDNPGPLTRrmqRGEQTYAQLETSEEDVYHQLTSERKQRASL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 726 KSEAENRIRTLKAESLEEKNMAKIhrgqLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEhlRR 805
Cdd:TIGR00618 562 KEQMQEIQQSFSILTQCDNRSKED----IPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLH--LQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 806 MEEARLQLKdqLLCLETEQESILgviGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERE 885
Cdd:TIGR00618 636 QCSQELALK--LTALHALQLTLT---QERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 886 NREKNLRHQlmlcRQQLRNLTENKESELQclfQQIERQEQLLDEIHREKRDLLEETQRKDEEmgSLQDRVIALETSTQVA 965
Cdd:TIGR00618 711 THIEEYDRE----FNEIENASSSLGSDLA---AREDALNQSLKELMHQARTVLKARTEAHFN--NNEEVTAALQTGAELS 781
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
456-767 |
2.77e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 456 KQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTqlyaa 535
Cdd:PRK05771 40 LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELEN----- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 536 lqQIENLRKELNDVltkralqeeelhskeEKLRDIkshqaDLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHlEEE 615
Cdd:PRK05771 115 --EIKELEQEIERL---------------EPWGNF-----DLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVEN-VEY 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 616 IAELK----------KSQAQDKAKLLemqesiKDLSAIRADLANKlaeeerakkavlKDLSDLTAQAKSRdeetatiITQ 685
Cdd:PRK05771 172 ISTDKgyvyvvvvvlKELSDEVEEEL------KKLGFERLELEEE------------GTPSELIREIKEE-------LEE 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 686 LKlerdvhqRELKDLTSSLQSVKTKHEQNIQ---ELMKHFkKEKSEAENRI-RTLKAESLE----EKnmakihrgQLEKL 757
Cdd:PRK05771 227 IE-------KERESLLEELKELAKKYLEELLalyEYLEIE-LERAEALSKFlKTDKTFAIEgwvpED--------RVKKL 290
|
330
....*....|
gi 2462539046 758 KSQCDRLTEE 767
Cdd:PRK05771 291 KELIDKATGG 300
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
222-807 |
2.85e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 222 RRLQELEREMRTERELVERRQdqlgLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEknqlEQELELSRRLLNQSEGS 301
Cdd:COG5022 782 RLRRLVDYELKWRLFIKLQPL----LSLLGSRKEYRSYLACIIKLQKTIKREKKLRETE----EVEFSLKAEVLIQKFGR 853
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 302 RETLLHQVEELRTQLTKAEGdrkglQHQVSQISKQQSNYQDEQGE-DWRFRRGVEREKQDLE---KQMSDLRVQLNF-SA 376
Cdd:COG5022 854 SLKAKKRFSLLKKETIYLQS-----AQRVELAERQLQELKIDVKSiSSLKLVNLELESEIIElkkSLSSDLIENLEFkTE 928
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 377 MASELEEVKRCMERKDKE--KAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAerkhadlQISELTRHAEDA 454
Cdd:COG5022 929 LIARLKKLLNNIDLEEGPsiEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNK-------ANSELKNFKKEL 1001
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 455 TKQAERYLSELQQSEALKEE----AEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTgKNNQILKEKDELKT 530
Cdd:COG5022 1002 AELSKQYGALQESTKQLKELpvevAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARY-KALKLRRENSLLDD 1080
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 531 QLYAALQQIENLRKELNdvLTKRALQEEELHSKEEKLRDIKSHQ--ADLELEVKNSLD-TIHRLESELKKQSKIQ----- 602
Cdd:COG5022 1081 KQLYQLESTENLLKTIN--VKDLEVTNRNLVKPANVLQFIVAQMikLNLLQEISKFLSqLVNTLEPVFQKLSVLQleldg 1158
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 603 -------------------SQMKVEKAHLEEEIAELKKSQAQD-KAKLLEMQESIKDLSaIRADLANKLAEEERAKKAVL 662
Cdd:COG5022 1159 lfweanlealpspppfaalSEKRLYQSALYDEKSKLSSSEVNDlKNELIALFSKIFSGW-PRGDKLKKLISEGWVPTEYS 1237
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 663 KDLSDLTAQAKSRDEETATIITQLKLERDvhqrELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEA-ENRIRTLKAESL 741
Cdd:COG5022 1238 TSLKGFNNLNKKFDTPASMSNEKLLSLLN----SIDNLLSSYKLEEEVLPATINSLLQYINVGLFNAlRTKASSLRWKSA 1313
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 742 EEKNM-----------AKIHRG--QLEKLKsQCDRLTEELTQNENENKKL--------KLKYQCLKDQLEEREKHISIEE 800
Cdd:COG5022 1314 TEVNYnseelddwcreFEISDVdeELEELI-QAVKVLQLLKDDLNKLDELldacyslnPAEIQNLKSRYDPADKENNLPK 1392
|
....*..
gi 2462539046 801 EHLRRME 807
Cdd:COG5022 1393 EILKKIE 1399
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
557-682 |
2.98e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 557 EEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKK-QSKIQSQMKVEKA--HLEEEIAELKKsqaqdkaKLLEM 633
Cdd:COG2433 412 EEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEaRSEERREIRKDREisRLDREIERLER-------ELEEE 484
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2462539046 634 QESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATI 682
Cdd:COG2433 485 RERIEELKRKLERLKELWKLEHSGELVPVKVVEKFTKEAIRRLEEEYGL 533
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
462-654 |
3.29e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 462 LSELQQSEALKEEAEKRREDLKLKAQESIRQWKlkhkKLERALEKQSETVDELTgknnqilKEKDELKTQLYAALQQIEN 541
Cdd:COG1579 9 LLDLQELDSELDRLEHRLKELPAELAELEDELA----ALEARLEAAKTELEDLE-------KEIKRLELEIEEVEARIKK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 542 LRKELNDVLTKRalqeeELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKqskIQSQMKVEKAHLEEEIAELKk 621
Cdd:COG1579 78 YEEQLGNVRNNK-----EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAE---LEAELAELEAELEEKKAELD- 148
|
170 180 190
....*....|....*....|....*....|...
gi 2462539046 622 sqaqdkAKLLEMQESIKDLSAIRADLANKLAEE 654
Cdd:COG1579 149 ------EELAELEAELEELEAEREELAAKIPPE 175
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
602-760 |
3.42e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 602 QSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADL---ANKLAEEERAKKAVL-KDLSDLTAQAKsrdE 677
Cdd:PRK00409 508 KKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELeekKEKLQEEEDKLLEEAeKEAQQAIKEAK---K 584
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 678 ETATIITQLKLERDVHQRELKDltSSLQSVKTKHEQNIQELMKHFKKEKSEAEN-------RIRTL--KAE--SLEEKNM 746
Cdd:PRK00409 585 EADEIIKELRQLQKGGYASVKA--HELIEARKRLNKANEKKEKKKKKQKEKQEElkvgdevKYLSLgqKGEvlSIPDDKE 662
|
170 180
....*....|....*....|...
gi 2462539046 747 A---------KIHRGQLEKLKSQ 760
Cdd:PRK00409 663 AivqagimkmKVPLSDLEKIQKP 685
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
458-758 |
3.47e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 3.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 458 AERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQ 537
Cdd:COG4372 1 GDRLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 538 QIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIA 617
Cdd:COG4372 81 ELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 618 ELkksqaQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQREL 697
Cdd:COG4372 161 SL-----QEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLAL 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462539046 698 KDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENRIRTLKAESLEEKNMAKIHRGQLEKLK 758
Cdd:COG4372 236 SALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELK 296
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
434-546 |
4.50e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 434 EAERKHADLQ----ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE 509
Cdd:PRK12704 52 EAIKKEALLEakeeIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2462539046 510 TVDELTGKNNQILKE-----KDELKTQLyaalqqIENLRKEL 546
Cdd:PRK12704 132 ELEELIEEQLQELERisgltAEEAKEIL------LEKVEEEA 167
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
219-818 |
5.76e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.58 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 219 RVERRLQELEREMRTERELVERRQDQ-LGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELElsRRLLNQ 297
Cdd:pfam10174 145 RIETQKQTLGARDESIKKLLEMLQSKgLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELH--RRNQLQ 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 298 SEGSRETLLHQVEELRTqltkaegdrkglqhqvSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSA- 376
Cdd:pfam10174 223 PDPAKTKALQTVIEMKD----------------TKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKf 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 377 MASELEEVKRCMERKDKEKAHLASQVENLTreleNGEKQQLQMLDRLKE-----------IQNHFDTCEAERKHADLQIS 445
Cdd:pfam10174 287 MKNKIDQLKQELSKKESELLALQTKLETLT----NQNSDCKQHIEVLKEsltakeqraaiLQTEVDALRLRLEEKESFLN 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 446 ELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLE------RALEKQSETVDELTGKNN 519
Cdd:pfam10174 363 KKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAglkervKSLQTDSSNTDTALTTLE 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 520 QILKEKDELKTQL--------YAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRL 591
Cdd:pfam10174 443 EALSEKERIIERLkeqreredRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSL 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 592 ESELKKQ----SKIQSQMKveKAHlEEEIAELKKSQAQDKAKLLEmqesiKDLSAIRADLANKLAEEERakkaVLKDLSD 667
Cdd:pfam10174 523 EIAVEQKkeecSKLENQLK--KAH-NAEEAVRTNPEINDRIRLLE-----QEVARYKEESGKAQAEVER----LLGILRE 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 668 LTAQAKSRDEETATIitqlkleRDVHQRELKDltsslQSVKTKHEQNIQELMKhfKKEKSEAENRIRtlkaeslEEKNMA 747
Cdd:pfam10174 591 VENEKNDKDKKIAEL-------ESLTLRQMKE-----QNKKVANIKHGQQEMK--KKGAQLLEEARR-------REDNLA 649
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462539046 748 KIHRgqleklKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLL 818
Cdd:pfam10174 650 DNSQ------QLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEAL 714
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
559-720 |
5.91e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 5.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 559 ELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQeSIK 638
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR-NNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 639 DLSAIradlankLAEEERAKKAvLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQEL 718
Cdd:COG1579 90 EYEAL-------QKEIESLKRR-ISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
|
..
gi 2462539046 719 MK 720
Cdd:COG1579 162 EA 163
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
168-343 |
6.33e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 168 LRDLSSEQIRLGDDFNRELSRRSRSDAETK--RALEELTEKLNEAQKQEVVSDRVERRLQELERemrtERELVERRQDQL 245
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDalQERREALQRLAEYSWDEIDVASAEREIAELEA----ELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 246 GLMSLQLqEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSREtlLHQVEELRTQLTKAEGD--- 322
Cdd:COG4913 688 AALEEQL-EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR--LELRALLEERFAAALGDave 764
|
170 180
....*....|....*....|....
gi 2462539046 323 ---RKGLQHQVSQISKQQSNYQDE 343
Cdd:COG4913 765 relRENLEERIDALRARLNRAEEE 788
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
450-660 |
6.46e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 40.06 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 450 HAEDATKQaeryLSELQQSEALKEEA----EKRREDL--KLKAQE-SIRQWKLKHKKLERALEKQSETVDELTGKNNQIL 522
Cdd:PRK11637 41 HASDNRDQ----LKSIQQDIAAKEKSvrqqQQQRASLlaQLKKQEeAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 523 KEKDE----LKTQLYAALQQIENLRKELndVLTKRALQEEEL---------HSKEEKLRDIKSHQADLELEVKNsldtih 589
Cdd:PRK11637 117 QQQAAqerlLAAQLDAAFRQGEHTGLQL--ILSGEESQRGERilayfgylnQARQETIAELKQTREELAAQKAE------ 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462539046 590 rLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKA 660
Cdd:PRK11637 189 -LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREAKA 258
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
512-667 |
6.82e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 6.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 512 DELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQAdlelEVKNSlDTIHRL 591
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG----NVRNN-KEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 592 ESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKD----LSAIRADLANKLAEEERAKKAVLKDLSD 667
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEkkaeLDEELAELEAELEELEAEREELAAKIPP 174
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
267-749 |
7.51e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.42 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 267 EGAIKNKLRQTETEK-NQLEQEL-ELSrrlLNQSEGSRETLLHQVEELRTQLTKAEGDRkgLQHQVSQISKQQSNyqdeq 344
Cdd:TIGR01612 961 EKSYKDKFDNTLIDKiNELDKAFkDAS---LNDYEAKNNELIKYFNDLKANLGKNKENM--LYHQFDEKEKATND----- 1030
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 345 gedwrfrrgVEREKQDLEKQMSDLRVQLNFSA--MASELE-EVKRCMERKDKEkahLASQVE-NLTRELENGEKQQLQML 420
Cdd:TIGR01612 1031 ---------IEQKIEDANKNIPNIEIAIHTSIynIIDEIEkEIGKNIELLNKE---ILEEAEiNITNFNEIKEKLKHYNF 1098
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 421 DRLKEIQNHFDTCEAER-----KHADLQISELTRHAEDATKQAERYLSELQ-QSEALKEEAEKRREDlklkaqESIRQWK 494
Cdd:TIGR01612 1099 DDFGKEENIKYADEINKikddiKNLDQKIDHHIKALEEIKKKSENYIDEIKaQINDLEDVADKAISN------DDPEEIE 1172
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 495 LKHKKLERALEKQSETVDELTGKNNQILK-EKDElktqlyAALQQIENLRKELNDVLTKRALQ--EEELHSKEEKLRDIK 571
Cdd:TIGR01612 1173 KKIENIVTKIDKKKNIYDEIKKLLNEIAEiEKDK------TSLEEVKGINLSYGKNLGKLFLEkiDEEKKKSEHMIKAME 1246
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 572 SHQADLElevknsldtihrlesELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRaDLANKL 651
Cdd:TIGR01612 1247 AYIEDLD---------------EIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIR-EKSLKI 1310
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 652 AE---EERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVhqRELKDLTSSLQSVKtKHEQNIQELMKHFKKEKSE 728
Cdd:TIGR01612 1311 IEdfsEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNI--LKLNKIKKIIDEVK-EYTKEIEENNKNIKDELDK 1387
|
490 500
....*....|....*....|.
gi 2462539046 729 AENRIRTLKAESLEEKNMAKI 749
Cdd:TIGR01612 1388 SEKLIKKIKDDINLEECKSKI 1408
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
194-427 |
8.15e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 194 AETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSlqLQEALKKQEAKADEHEGAIKNK 273
Cdd:COG3206 185 PELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEA--RLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 274 --LRQTETEKNQLEQEL-ELSRRLLNQSEgsretllhQVEELRTQLTKAegdRKGLQHQVSQISKQQSNYqdeqgedwrf 350
Cdd:COG3206 263 pvIQQLRAQLAELEAELaELSARYTPNHP--------DVIALRAQIAAL---RAQLQQEAQRILASLEAE---------- 321
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462539046 351 RRGVEREKQDLEKQMSDLRVQLN-FSAMASELEEvkrcmerkdkekahlasqvenLTRELENGEKQQLQMLDRLKEIQ 427
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAeLPELEAELRR---------------------LEREVEVARELYESLLQRLEEAR 378
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
261-489 |
8.89e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 8.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 261 AKADEHEGAIKNKLRQTETEKNQLEQELElsrRLLNQSEGSREtllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNY 340
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELD---ALQAELEELNE----EYNELQAELEALQAEIDKLQAEIAEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 341 QDEQGEDWR--FRRGVEREK----------QDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRE 408
Cdd:COG3883 85 REELGERARalYRSGGSVSYldvllgsesfSDFLDRLSALSKIA--DADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 409 LENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQE 488
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
.
gi 2462539046 489 S 489
Cdd:COG3883 243 A 243
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
200-380 |
8.97e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 8.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 200 LEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLG-------------------LMSLQLQEALKKQE 260
Cdd:COG3883 46 LEELNEEYNELQAE---LEALQAEIDKLQAEIAEAEAEIEERREELGeraralyrsggsvsyldvlLGSESFSDFLDRLS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 261 AKADEHEgAIKNKLRQTETEKNQLEQElelsrrllnqsegsRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNY 340
Cdd:COG3883 123 ALSKIAD-ADADLLEELKADKAELEAK--------------KAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQL 187
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2462539046 341 QDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASE 380
Cdd:COG3883 188 SAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAA 227
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
278-464 |
9.12e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.56 E-value: 9.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 278 ETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSnyqdeqgedwrfrrgvere 357
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGA------------------- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 358 kqDLEKQMSDLrvqlnfsamASELEEVKRCMERKDKEKAHLASQVENLTRElengekqqlqmldrLKEIQNHFDTCEAER 437
Cdd:PRK09039 113 --AAEGRAGEL---------AQELDSEKQVSARALAQVELLNQQIAALRRQ--------------LAALEAALDASEKRD 167
|
170 180 190
....*....|....*....|....*....|.
gi 2462539046 438 KHADLQISELTRHAEDA----TKQAERYLSE 464
Cdd:PRK09039 168 RESQAKIADLGRRLNVAlaqrVQELNRYRSE 198
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
612-746 |
9.27e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 38.73 E-value: 9.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 612 LEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLtAQAKSRDEETATIITQLKLERD 691
Cdd:pfam13851 31 LKEEIAELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLENYEKDKQSL-KNLKARLKVLEKELKDLKWEHE 109
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2462539046 692 VHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENRIRTLkAESLEEKNM 746
Cdd:pfam13851 110 VLEQRFEKVERERDELYDKFEAAIQDVQQKTGLKNLLLEKKLQAL-GETLEKKEA 163
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
201-297 |
9.35e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 40.03 E-value: 9.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462539046 201 EELTEKLNEAQ-KQEVVSDRVERRLQEL----------EREMRTErelVERRQDQLGLMSLQLQEALKKQE------AKA 263
Cdd:pfam10168 592 EKLAEKYEEIKdKQEKLMRRCKKVLQRLnsqlpvlsdaEREMKKE---LETINEQLKHLANAIKQAKKKMNyqryqiAKS 668
|
90 100 110
....*....|....*....|....*....|....*.
gi 2462539046 264 DEHEG--AIKNKLRQTETEKNQLEQELELSRRLLNQ 297
Cdd:pfam10168 669 QSIRKksSLSLSEKQRKTIKEILKQLGSEIDELIKQ 704
|
|
| |
