|
Name |
Accession |
Description |
Interval |
E-value |
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
25-257 |
8.23e-27 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 113.73 E-value: 8.23e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 25 QQLHELpwgrmDLATQSLTLDTCRALGNLLQKETQLTELILSDCMLSEEGATLLLQGLCTNTVLRFLDLKGNNLQATGAK 104
Cdd:COG5238 208 TTVTTL-----WLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGAI 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 105 TLGKLLRQNKSIQSLTLEWNNLGtwEDAFATFCRALVGNDALRQLDLRNNQISHQGTEELALALKSNTGLQQLDLRWNNI 184
Cdd:COG5238 283 ALAKALQGNTTLTSLDLSVNRIG--DEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQI 360
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2753756263 185 GLLGGQALVNCLPSNRTLRRLELVGNNIPSDVLRAVEQAMVYNQDREATFRENQARIHVLSKEVQHLWEEKSK 257
Cdd:COG5238 361 GDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQTNRLHTLILDGNLIGAEAQQRLEQLLERIKSV 433
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
34-224 |
4.29e-23 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 100.51 E-value: 4.29e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 34 RMDLATQSLTLDTCRALGNLLQKETqLTELILSDCMLSEEGATLLLQGLCTNTV-LRFLDLKGNNLQATGAKTLGKLLRQ 112
Cdd:cd00116 85 ELDLSDNALGPDGCGVLESLLRSSS-LQELKLNNNGLGDRGLRLLAKGLKDLPPaLEKLVLGRNRLEGASCEALAKALRA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 113 NKSIQSLTLEWNNLGtwEDAFATFCRALVGNDALRQLDLRNNQISHQGTEELALALKSNTGLQQLDLRWNNIGLLGGQAL 192
Cdd:cd00116 164 NRDLKELNLANNGIG--DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241
|
170 180 190
....*....|....*....|....*....|...
gi 2753756263 193 VNCLPS-NRTLRRLELVGNNIPSDVLRAVEQAM 224
Cdd:cd00116 242 ASALLSpNISLLTLSLSCNDITDDGAKDLAEVL 274
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
48-224 |
1.61e-18 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 87.03 E-value: 1.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 48 RALGNLLQKETQLTELILSDCMLSEEGATLLlQGLCTNTVLRFLDLKGNNLQATGAKTLGKLLRQNK-SIQSLTLEWNNL 126
Cdd:cd00116 71 QSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPpALEKLVLGRNRL 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 127 gTWEDAFATfCRALVGNDALRQLDLRNNQISHQGTEELALALKSNTGLQQLDLRWNNIGLLGGQALVNCLPSNRTLRRLE 206
Cdd:cd00116 150 -EGASCEAL-AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227
|
170
....*....|....*...
gi 2753756263 207 LVGNNIPSDVLRAVEQAM 224
Cdd:cd00116 228 LGDNNLTDAGAAALASAL 245
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
345-649 |
1.63e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 1.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 345 RLEQQEAAERESKLLKDLIAANEKNLLLRnQVDELEQKVKSQQEQLfltrEELTNTSAELKMRVVQAEERLELEKRR--- 421
Cdd:COG1196 204 PLERQAEKAERYRELKEELKELEAELLLL-KLRELEAELEELEAEL----EELEAELEELEAELAELEAELEELRLElee 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 422 ------SRQSLEYLEQLRSKEVEHMTRHLEENERAMVERIQRLEAARLALEEELSrvktvALSERIQAEEELIKAKSQVR 495
Cdd:COG1196 279 leleleEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE-----ELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 496 LEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKVAEVTRVRVE 575
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2753756263 576 LQEQKGHLQAELTAQEALKEKMAALERQLKMMANDHREALLDRESENASLQEKLRLKEAEVARIRDEEAQRARF 649
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
317-659 |
1.84e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 1.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 317 QKALDLRELLTTTDQEHRSLvqkqAKDHRLEQQEAAERESKLLKDLIAAneknllLRNQVDELEQKVKSQQEQLFLTREE 396
Cdd:COG1196 213 ERYRELKEELKELEAELLLL----KLRELEAELEELEAELEELEAELEE------LEAELAELEAELEELRLELEELELE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 397 LTNTSA---ELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKEVEHMTRHLEENER--AMVERIQRLEAARLALEEELSR 471
Cdd:COG1196 283 LEEAQAeeyELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEleELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 472 VKT--VALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKR 549
Cdd:COG1196 363 AEEalLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 550 RLEKLQQELSNKDQEKVAEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQLKMMANDhreALLDRESENASLQEKL 629
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY---EGFLEGVKAALLLAGL 519
|
330 340 350
....*....|....*....|....*....|
gi 2753756263 630 RLKEAEVARIRDEEAQRARFLQNAVLAYVQ 659
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALAAALQ 549
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
28-185 |
2.15e-14 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 74.70 E-value: 2.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 28 HELPWGRMDLATQSLTLDTCRALGNLLQKETQLTELILSDCMLSEEGATLLLQGLCTNTVLRFLDLKGNNLQATGAKTLG 107
Cdd:cd00116 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2753756263 108 KLLRQNKSIQSLTLEWNNLGTWedAFATFCRALV-GNDALRQLDLRNNQISHQGTEELALALKSNTGLQQLDLRWNNIG 185
Cdd:cd00116 215 ETLASLKSLEVLNLGDNNLTDA--GAAALASALLsPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
91-212 |
1.66e-12 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 69.82 E-value: 1.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 91 LDLKGNNLQATGAKTLGKLLrQNKSIQSLTLEWNNLGtwEDAFATFCRALVGNDALRQLDLRNNQISHQGTEELALALKS 170
Cdd:COG5238 158 LLGLAARLGLLAAISMAKAL-QNNSVETVYLGCNQIG--DEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKG 234
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2753756263 171 NTGLQQLDLRWNNIGLLGGQALVNCLPSNRTLRRLELVGNNI 212
Cdd:COG5238 235 NKSLTTLDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQI 276
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
264-648 |
4.28e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 4.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 264 ETTDKQQEEMVQSSRTSTARVGQLQEALNERHSIINTLKAKLQMTEAALALSEQKALDLRELLTTTDQEHRSLVQKQAK- 342
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARl 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 343 --------------DHRLEQQEAAEREskLLKDLIAANEKNLLLRNQVDELEQKVKSQQEQLFLTREELTNTSAELKMRV 408
Cdd:COG1196 301 eqdiarleerrrelEERLEELEEELAE--LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 409 VQAEERLELEKRRSRQSLEYLEQLRSKE--VEHMTRHLEENERAMVERIQRLEAARLALEEELSRVKTVALSERIQAEEE 486
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEeaEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 487 LIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSnkDQEKV 566
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG--VEAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 567 AEVTRVRVELQEQKGHLQAELTAQEALKE-KMAALERQLKMMANDHREALLDRESENASLQEKLRLKEAEVARIRDEEAQ 645
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAAIEYlKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
...
gi 2753756263 646 RAR 648
Cdd:COG1196 617 VLG 619
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
380-666 |
4.87e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 4.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 380 EQKVKSQQEQLFLTREELTNTSAELKmrvvqaEERLELEKRRSRQSLEyLEQLRSKEVEHMTRHLEENERamVERIQRLE 459
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELE------AELEELEAELEELEAE-LAELEAELEELRLELEELELE--LEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 460 AARLALEEELSRVKTVALSERIQAEEELIKAKSQvRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQASQ 539
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEE-LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 540 LGLQVEGLKRRLEKLQQELSNKDQEKVAEVTRVRvELQEQKGHLQAELTAQEALKEKMAALERQLKMMANDHREALLDRE 619
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLE-ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2753756263 620 SENASLQEKLRLKEAEVARIRDEEAQRARFLQNAVLAYVQGSSLRAL 666
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
281-605 |
2.25e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 2.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 281 TARVGQLQEALNERHSIINTLKAKLQMTEAALALSEQKALDLRELLTTTDQEHRSLVQKQAK------DHRLEQQEAAER 354
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQleeriaQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 355 ESKLLKDLIAANEKNLLLRNQVDELEQKVKSQQEQLFLTREELTNTSAELKmrvvqaeeRLELEKRRSRQSLEYLEQlRS 434
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT--------LLNEEAANLRERLESLER-RI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 435 KEVEHMTRHLEENERAMVERIQRLEAARLALEEELsrvktvalsERIQAEeelIKAKSQVRLEEQQHLAHLEEKLRLLAL 514
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELI---------EELESE---LEALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 515 ARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNkdqekvaevtRVRVELQEQKGHLQAELTAQEALK 594
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE----------EYSLTLEEAEALENKIEDDEEEAR 971
|
330
....*....|.
gi 2753756263 595 EKMAALERQLK 605
Cdd:TIGR02168 972 RRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-656 |
9.29e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 9.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 228 QDREATFRENQARIHVLSKEVQHLwEEKSKQFLDPVETTDKQQEEMVQSSRTSTARVGQLQEALNERHSIINTLKAKLQM 307
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARL-EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 308 TEAALALSEQKALDLRELLTTTDQEHRSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVDELEQKVKSQQ 387
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 388 EQLFLTREELTNTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKEVEHMTRHLEENERAMVERIQR---------- 457
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAalllaglrgl 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 458 -----------------LEAARLALEEELSRVKTVALSERIQAEEELIKAK-SQVRLEEQQHLAHLEEKLRLLALARDEA 519
Cdd:COG1196 523 agavavligveaayeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRaTFLPLDKIRARAALAAALARGAIGAAVD 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 520 QSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKVAEVTRVRVELQEQKGHLQAELTAQEALKEKMAA 599
Cdd:COG1196 603 LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE 682
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 2753756263 600 LERQLKMMANDHREALLDRESENASLQEKLRLKEAEVARIRDEEAQRARFLQNAVLA 656
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
347-643 |
3.90e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 3.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 347 EQQEAAERESKLLKDLIAANEKNLLLRNQVDELEQKVKSQQEQLfltreeltntsAELKMRVVQAEERLELEKRRSRQSL 426
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI-----------GEIEKEIEQLEQEEEKLKERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 427 EYLEQLrSKEVEHMTRHLEENEramvERIQRLEAARLALEEELSRVKTVALSERIQAEEELIKAKSQVRLEEQQHLAHLE 506
Cdd:TIGR02169 744 EDLSSL-EQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 507 EKLRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKdQEKVAEVTRVRVELQEQKGHLQAE 586
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEL-EAALRDLESRLGDLKKERDELEAQ 897
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2753756263 587 LTAQEALKEKMAALERQLKMMANDHREALLDRESENASLQEKLRLKEAEVARIRDEE 643
Cdd:TIGR02169 898 LRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
313-646 |
2.20e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 2.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 313 ALSEQKALDLRELLTTTDQEHRSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKnlllRNQVDELEQKV--KSQQEQL 390
Cdd:PTZ00121 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE----AKKADEAKKKAeeAKKAEEA 1462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 391 FLTREElTNTSAELKMRVVQAEERLELeKRRSRQSLEYLEQLRSKEVEHM----TRHLEENERAmvERIQRLEAARLALE 466
Cdd:PTZ00121 1463 KKKAEE-AKKADEAKKKAEEAKKADEA-KKKAEEAKKKADEAKKAAEAKKkadeAKKAEEAKKA--DEAKKAEEAKKADE 1538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 467 ----EELSRVKTVALSERIQAEEELIKAKSQVRLEEQQHLAHLE-EKLRLLALAR-DEAQSTCLQQRQMVAEAQTQASQL 540
Cdd:PTZ00121 1539 akkaEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKaEEAKKAEEARiEEVMKLYEEEKKMKAEEAKKAEEA 1618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 541 GLQVEGLKRRLE--KLQQELSNKDQEKVAEVTRVRVElqEQKGHLQAELTAQEALKEKMAALERQLKMMANDHREALLDR 618
Cdd:PTZ00121 1619 KIKAEELKKAEEekKKVEQLKKKEAEEKKKAEELKKA--EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
330 340 350
....*....|....*....|....*....|..
gi 2753756263 619 ESENASLQEKLRLKEAEVAR----IRDEEAQR 646
Cdd:PTZ00121 1697 EAEEAKKAEELKKKEAEEKKkaeeLKKAEEEN 1728
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
286-628 |
3.26e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 3.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 286 QLQEALNERHSIINTLKAKLQMTEAALALSEQ-KALDLRELLTTTDQEHRSLVQKQAkdhrlEQQEAAERESKLLKDLIA 364
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQAEKAERYKELKAElRELELALLVLRLEELREELEELQE-----ELKEAEEELEELTAELQE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 365 ANEKNLLLRNQVDELEQKVKSQQEQLFLTREELtntsaelkmrvvqaeERLELEKRRSRQSLEYLEQlrskevehmtrhl 444
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEIEELQKELYALANEI---------------SRLEQQKQILRERLANLER------------- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 445 eeNERAMVERIQRLEAARLALEEELSRVKtvALSERIQAEEELIKAKsqvrleeqqhLAHLEEKLRLLALARDEAQSTCL 524
Cdd:TIGR02168 317 --QLEELEAQLEELESKLDELAEELAELE--EKLEELKEELESLEAE----------LEELEAELEELESRLEELEEQLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 525 QQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKVAEVTR-VRVELQEQKGHLQAELTAQEALKEKMAALERQ 603
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQEELERLEEA 462
|
330 340
....*....|....*....|....*
gi 2753756263 604 LKMMANDHREALLDRESENASLQEK 628
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQL 487
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
373-645 |
4.25e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 4.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 373 RNQVDELEQKVKSQQEQLFLTREELTNTSAELkmrvvqaeERLELEKRRSRQSLEYLEQLRSKEVEHMTRHLEENERAMv 452
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKEL--------EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE- 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 453 ERIQRLEAARLALEEELsrvktVALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAE 532
Cdd:TIGR02168 747 ERIAQLSKELTELEAEI-----EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 533 AQTQASQLGLQVEGLKRRLEKLQQELSNKdQEKVAEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQLKMMANDHR 612
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEEL-SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270
....*....|....*....|....*....|...
gi 2753756263 613 EALLDRESENASLQEKLRLKEAEVARIRDEEAQ 645
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEG 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-642 |
4.61e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 4.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 228 QDREATFRENQARIHVLSKEVQHlWEEKSKQFLDPVETTDKQQEEMVQSSRTSTARVGQLQEALNERHSIINTLKAKLQM 307
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAE-AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 308 TEAALALSEQKALDLRELLTTTDQEHRSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVDE-------LE 380
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYegflegvKA 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 381 QKVKSQQEQLFLTREELTNTSAELKMRVVQAEERLELEKRRS-----RQSLEYLEQLRSKEVEHMTRHLEENERAMVERI 455
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEddevaAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 456 QRLEAARLALEEELSRVKTVALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQstclQQRQMVAEAQT 535
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGS----AGGSLTGGSRR 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 536 QASQLGLQVEGLKRRLEKLQQELSNKDQEKVAEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQLKMMANDHREAL 615
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
410 420
....*....|....*....|....*..
gi 2753756263 616 LDRESENASLQEKLRLKEAEVARIRDE 642
Cdd:COG1196 749 EEEALEELPEPPDLEELERELERLERE 775
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
40-212 |
7.56e-08 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 55.32 E-value: 7.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 40 QSLTLDTCRALGNLlqkeTQLTELILSDCMLSEegatlLLQGLCTNTVLRFLDLKGNNLqatgaKTLGKLLRQNKSIQSL 119
Cdd:COG4886 99 TELDLSGNEELSNL----TNLESLDLSGNQLTD-----LPEELANLTNLKELDLSNNQL-----TDLPEPLGNLTNLKSL 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 120 TLEWNNLgtwedafATFCRALVGNDALRQLDLRNNQIShqgteELALALKSNTGLQQLDLRWNNIGLLGGQalvncLPSN 199
Cdd:COG4886 165 DLSNNQL-------TDLPEELGNLTNLKELDLSNNQIT-----DLPEPLGNLTNLEELDLSGNQLTDLPEP-----LANL 227
|
170
....*....|...
gi 2753756263 200 RTLRRLELVGNNI 212
Cdd:COG4886 228 TNLETLDLSNNQL 240
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
438-648 |
7.96e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 7.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 438 EHMtrhLEENE-----RAMVERIQRLEAARLALEEELSRVKT----VALSERIQAEEEliKAKSQVRLEEQQHLAHLEEK 508
Cdd:COG4913 215 EYM---LEEPDtfeaaDALVEHFDDLERAHEALEDAREQIELlepiRELAERYAAARE--RLAELEYLRAALRLWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 509 LRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKR--------RLEKLQQELSNKDQEKvAEVTRVRVELQEQ- 579
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAqirgnggdRLEQLEREIERLEREL-EERERRRARLEALl 368
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2753756263 580 -KGHLQAELTAQE--ALKEKMAALERQLKMMANDHREALLDRESENASLQEKLRLKEAEVARIR------DEEAQRAR 648
Cdd:COG4913 369 aALGLPLPASAEEfaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLErrksniPARLLALR 446
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
347-648 |
1.07e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 347 EQQEAAERESKLLKDLIAANEKNLL-----LRNQVDELEQKVKSQQEQLfltrEELTNTSAELKMRVVQAEERL-ELEKR 420
Cdd:TIGR02169 205 REREKAERYQALLKEKREYEGYELLkekeaLERQKEAIERQLASLEEEL----EKLTEEISELEKRLEEIEQLLeELNKK 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 421 RSRQSLEYLEQLRSK--EVEHMTRHLEENERAMVERIQRLEAARLALEEELSRVK-TVALSERIQAEEELIKAKSQVRLE 497
Cdd:TIGR02169 281 IKDLGEEEQLRVKEKigELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLaEIEELEREIEEERKRRDKLTEEYA 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 498 EqqhlahLEEKLRLLaLARDEAQSTCLQQ-RQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKV---AEVTRVR 573
Cdd:TIGR02169 361 E------LKEELEDL-RAELEEVDKEFAEtRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAdlnAAIAGIE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 574 ---VELQEQKGHLQAELTAQE----ALKEKMAALERQLKmmanDHREALLDRESENASLQEKLRLKEAEVARIRDEEAQR 646
Cdd:TIGR02169 434 akiNELEEEKEDKALEIKKQEwkleQLAADLSKYEQELY----DLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509
|
..
gi 2753756263 647 AR 648
Cdd:TIGR02169 510 RA 511
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
378-641 |
1.13e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 378 ELEQkVKSQQEQLFLTREELTNTSAELKMRVVQAEERLELEKR--------RSRQSLEYLEQLRS--KEVEHMTRHLEEN 447
Cdd:TIGR02169 178 ELEE-VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyegyeLLKEKEALERQKEAieRQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 448 ERAMVERIQRLEAARLALEEELSRVKTVALSERIQAEEELIKAKSQVRL------EEQQHLAHLEEKLRLLALARDEAQS 521
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASlersiaEKERELEDAEERLAKLEAEIDKLLA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 522 TCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKD---QEKVAEVTRVRVE---LQEQKGHLQAELTAQEALKE 595
Cdd:TIGR02169 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDkefAETRDELKDYREKlekLKREINELKRELDRLQEELQ 416
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2753756263 596 KMAALERQLKMMANDHREALLDRESENASLQEKLRLKEAEVARIRD 641
Cdd:TIGR02169 417 RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
143-227 |
1.85e-07 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 54.03 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 143 NDALRQLDLRNNQISHQGTEELALALKSNTGLQQLDLRWNNIGLLGGQALVNCLPSNRTLRRLELVGNNIPSDVLRAVEQ 222
Cdd:COG5238 179 NNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAE 258
|
....*
gi 2753756263 223 AMVYN 227
Cdd:COG5238 259 ALKNN 263
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
446-648 |
3.27e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 3.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 446 ENERAMVERIQRLEAARLALEEELSRVKTVALSERIQAEEELIKAKSQVRLEEQQhLAHLEEKLRLLALARDEAQSTCLQ 525
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE-LAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 526 QRQMVAEAQTQASQLGLQ-----------VEGLKRRLEKLQQeLSNKDQEKVAEVTRVRVELQEQKGHLQAELTAQEALK 594
Cdd:COG4942 102 QKEELAELLRALYRLGRQpplalllspedFLDAVRRLQYLKY-LAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2753756263 595 EKMAALERQLKMMANDHREALLDRESENASLQEKLRLKEAEVARIRDEEAQRAR 648
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
331-643 |
1.39e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 331 QEHRSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVDELEQKVKSQQEQLFLTREELTNTSAELKM--RV 408
Cdd:PTZ00121 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaeEA 1533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 409 VQAEERLELEKRRSRQSLEYLEQLRS----KEVEHMTRhlEENERAMVERiqRLEAARLALEEELSRVKTVALSERIQAE 484
Cdd:PTZ00121 1534 KKADEAKKAEEKKKADELKKAEELKKaeekKKAEEAKK--AEEDKNMALR--KAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 485 EELIKAK-SQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQ------- 556
Cdd:PTZ00121 1610 EEAKKAEeAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKaeedekk 1689
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 557 --ELSNKDQEKVAEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQLKMMANDHREALLDrESENASLQEKLRLKEA 634
Cdd:PTZ00121 1690 aaEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEEK 1768
|
....*....
gi 2753756263 635 EVARIRDEE 643
Cdd:PTZ00121 1769 KAEEIRKEK 1777
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
407-603 |
6.98e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 6.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 407 RVVQAEERLEL---------EKRRSRQSLEYLEQLRSK-EVEHMTRHLEENEramvERIQRLEAARLALEEELSRVKTva 476
Cdd:COG4913 243 ALEDAREQIELlepirelaeRYAAARERLAELEYLRAAlRLWFAQRRLELLE----AELEELRAELARLEAELERLEA-- 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 477 lsERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEaqstclqQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQ 556
Cdd:COG4913 317 --RLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEE-------RERRRARLEALLAALGLPLPASAEEFAALRA 387
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2753756263 557 ELSNKDQEKVAEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQ 603
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
253-638 |
7.80e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 7.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 253 EEKSKQFLDPVETTDKQQEEMVQSSRTSTARVGQLQEALNERHSII----NTLKAKL-QMTEAALALSEQKALDLRELLT 327
Cdd:pfam12128 328 EDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVtakyNRRRSKIkEQNNRDIAGIKDKLAKIREARD 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 328 TTDQEHRSLVQKQ--------------AKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVDELEqKVKSQQEQLFLT 393
Cdd:pfam12128 408 RQLAVAEDDLQALeselreqleagkleFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIE-RAREEQEAANAE 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 394 REELTNTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKEV--EHMTRHLEENERAMVERiqrlEAARLALEEELSR 471
Cdd:pfam12128 487 VERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFpqAGTLLHFLRKEAPDWEQ----SIGKVISPELLHR 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 472 VKTVALSERIQAEEELIKAKSQVRLEEQQH--LAHLEEKLRllaLARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKR 549
Cdd:pfam12128 563 TDLDPEVWDGSVGGELNLYGVKLDLKRIDVpeWAASEEELR---ERLDKAEEALQSAREKQAAAEEQLVQANGELEKASR 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 550 RLEKLQQELSNKDQekvaEVTRVRVELQEQKGHLQAELTAQEALK-EKMAALERQLKMMANDHREAL--LDRESENASLQ 626
Cdd:pfam12128 640 EETFARTALKNARL----DLRRLFDEKQSEKDKKNKALAERKDSAnERLNSLEAQLKQLDKKHQAWLeeQKEQKREARTE 715
|
410
....*....|..
gi 2753756263 627 EKLRLKEAEVAR 638
Cdd:pfam12128 716 KQAYWQVVEGAL 727
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
376-614 |
1.14e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 376 VDELEQKvKSQQEQLFLTREELTNTSAELKMRVVQAEERLELEKRRSRqsleyLEQLRSKEVEHMTRHLEENERAMvERI 455
Cdd:PRK02224 467 VETIEED-RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIER-----LEERREDLEELIAERRETIEEKR-ERA 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 456 QRLEAARLALEEELSRVKTVALSERIQAEEELIKAKS-----QVRLEEQQHLAHLEEKLRLLALARDEAQS--------- 521
Cdd:PRK02224 540 EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAElnsklAELKERIESLERIRTLLAAIADAEDEIERlrekreala 619
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 522 -TCLQQRQMVAEAQTQASQLGLQVEGlkRRLEKLQQELSNKDQ------EKVAEVTRVRVELQEQKGHLQAELTAQEALK 594
Cdd:PRK02224 620 eLNDERRERLAEKRERKRELEAEFDE--ARIEEAREDKERAEEyleqveEKLDELREERDDLQAEIGAVENELEELEELR 697
|
250 260
....*....|....*....|
gi 2753756263 595 EKMAALERQLKMMANDHREA 614
Cdd:PRK02224 698 ERREALENRVEALEALYDEA 717
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
378-651 |
1.15e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 378 ELEQKVKSQQEQLFLTREELTNTSAELKMRVVQAE-ERLELEKRRSRQSLEYLEqlRSKEVEHMTRHLEENERAMVERIQ 456
Cdd:pfam17380 304 EKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEqERMAMERERELERIRQEE--RKRELERIRQEEIAMEISRMRELE 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 457 RLEAARLALEEELSRVKTVALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQ 536
Cdd:pfam17380 382 RLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQ 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 537 ASQLGLQVEglKRRLEKLQQELSNKDQEKVAEVTR--VRVELQEQKGHLQAELTAQEALKEKM-----AALERQLKMMAN 609
Cdd:pfam17380 462 VERLRQQEE--ERKRKKLELEKEKRDRKRAEEQRRkiLEKELEERKQAMIEEERKRKLLEKEMeerqkAIYEEERRREAE 539
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2753756263 610 DHREALLDREsENASLQEKLRLKEAEVARIRDEEAQRARFLQ 651
Cdd:pfam17380 540 EERRKQQEME-ERRRIQEQMRKATEERSRLEAMEREREMMRQ 580
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
335-567 |
1.26e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 335 SLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKNL-LLRNQVDELEQKVKSQQEQLFLTREELTNTSAELKmrvVQAEE 413
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEkALLKQLAALERRIAALARRIRALEQELAALEAELA---ELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 414 RLELEKRRSRQSLEYLEQLRSKEVEHMTRHLE-----ENERAMVERIQRLEAARLALEEELSrvktvALSERIQAEEELI 488
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAE-----ELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2753756263 489 KAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKVA 567
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
317-651 |
1.37e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 317 QKALDLRELLTTTdQEHRSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVdELEQKVKSQQEQLfltrEE 396
Cdd:COG3096 285 ERALELRRELFGA-RRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTAL-RQQEKIERYQEDL----EE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 397 LTNTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKEVEHMTRHLEENERAMVER--IQRLEAARLALEE-ELSRVK 473
Cdd:COG3096 359 LTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQqaVQALEKARALCGLpDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 474 TVALSERIQAEEELIkakSQVRLEEQQHLA-------HLEEKLRLL-----ALARDEAQSTCLQQ----RQMVAEAQtQA 537
Cdd:COG3096 439 AEDYLAAFRAKEQQA---TEEVLELEQKLSvadaarrQFEKAYELVckiagEVERSQAWQTARELlrryRSQQALAQ-RL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 538 SQLGLQVEGLKRRL------EKLQQELS---NKDQEKVAEVTRVRVELQEQKGHLQAELT-----------AQEALKEKM 597
Cdd:COG3096 515 QQLRAQLAELEQRLrqqqnaERLLEEFCqriGQQLDAAEELEELLAELEAQLEELEEQAAeaveqrselrqQLEQLRARI 594
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2753756263 598 AALERQ----------LKMMANDHREALLDRESENASLQEKLRlKEAEVARIRDEEAQRARFLQ 651
Cdd:COG3096 595 KELAARapawlaaqdaLERLREQSGEALADSQEVTAAMQQLLE-REREATVERDELAARKQALE 657
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
200-539 |
3.56e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 3.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 200 RTLRRLELVGNNIpsDVLRAVEQAMVYNQDREATFRENQARIHVLSKEVQhlwEEKSKQFLDPVETTDKQQEEMVQSSRT 279
Cdd:TIGR02169 174 KALEELEEVEENI--ERLDLIIDEKRQQLERLRREREKAERYQALLKEKR---EYEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 280 STARVGQLQEALNERHSIINTLKAKL-QMTEAALALSEQKALDLRELLTTTDQEHRSLVQKQA-KDHRLEQQEAAERESK 357
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLeELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAeKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 358 LLKDLIAANEKNL-----LLRNQVDELEQKVKSQQEQLFLTR---EELTNTSAELKMRVVQAEERLELEKRRsrqsLEYL 429
Cdd:TIGR02169 329 AEIDKLLAEIEELereieEERKRRDKLTEEYAELKEELEDLRaelEEVDKEFAETRDELKDYREKLEKLKRE----INEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 430 EQLRSKEVEHMTRHLEENERaMVERIQRLEAARLALEEELSrvktvALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKL 509
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELAD-LNAAIAGIEAKINELEEEKE-----DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY 478
|
330 340 350
....*....|....*....|....*....|
gi 2753756263 510 RLLalardEAQSTCLQQRQMVAEAQTQASQ 539
Cdd:TIGR02169 479 DRV-----EKELSKLQRELAEAEAQARASE 503
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
91-238 |
3.87e-05 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 46.19 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 91 LDLKGNNLQATGAKTLGKLLRQNKSIQSLTLEWNNLGTWEDAFATFCRALVGNDALRQLDLRNNQISHQGTEELALALKS 170
Cdd:cd00116 28 LRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 171 NTgLQQLDLRWNNIGLLGGQALVNCLPSNR-TLRRLELVGNNIPSDVLRAVEQAMVYNQD-REATFRENQ 238
Cdd:cd00116 108 SS-LQELKLNNNGLGDRGLRLLAKGLKDLPpALEKLVLGRNRLEGASCEALAKALRANRDlKELNLANNG 176
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
217-653 |
4.43e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 4.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 217 LRAVEQAMVYNQDREAtfrENQARIhvlsKEVQHLWEEKSKQFLDPVETTDKQQEEMVQSSRTSTARVGQLQEALNERHS 296
Cdd:PTZ00121 1193 LRKAEDARKAEAARKA---EEERKA----EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 297 IINTLKAKLQMTEAALALSE----QKALDLR---ELLTTTDQEHRSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKN 369
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADELKKaeekKKADEAKkaeEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 370 LLLRNQVDELEQKVKSQQEQLF---LTREELTNTSAELKMRVVQAEERLELeKRRSRQSLEYLEQLRSKEVEhmTRHLEE 446
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEaaeKKKEEAKKKADAAKKKAEEKKKADEA-KKKAEEDKKKADELKKAAAA--KKKADE 1422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 447 NERAMVERIQRLEAARLALEEELSRVKTVALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQ 526
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 527 RQmVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKVAEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQLKM 606
Cdd:PTZ00121 1503 KK-AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 2753756263 607 MANDHREALLDRESENASLQEKLRLKEAEVARIRDEEAQRARFLQNA 653
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
309-558 |
5.82e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 5.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 309 EAALALSEQKALDLRELLTTTDQEHRSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVDELEQKVKSQQE 388
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 389 QLFLTREELTNTSAELKMRVVQAEERLElekrrsrqslEYLEQLRSKEVEHMTRHLEENERAMVERIQRLEAARLALEEE 468
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAG----------RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 469 LSRVKTVALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLK 548
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
250
....*....|
gi 2753756263 549 RRLEKLQQEL 558
Cdd:COG1196 767 RELERLEREI 776
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
453-654 |
6.92e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 6.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 453 ERIQRLEAARLALEEELSrvktvALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDeaqstclqqrqmVAE 532
Cdd:COG4913 610 AKLAALEAELAELEEELA-----EAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAERE------------IAE 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 533 AQTQASQLGL---QVEGLKRRLEKLQQELsnkdqekvAEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQLKMMAN 609
Cdd:COG4913 673 LEAELERLDAssdDLAALEEQLEELEAEL--------EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2753756263 610 DHREALLDRESENASLQEKLRLKEAEVARIRDEEAQRARFLQNAV 654
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
230-606 |
8.13e-05 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 45.63 E-value: 8.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 230 REATFRENQARihvlskEVQHLWEEKSKQFLDPVETTDKQQEEMVQSSRTSTARVGQLQEALNERhsiintlkakLQMTE 309
Cdd:pfam02029 9 RERRRRAREER------RRQKEEEEPSGQVTESVEPNEHNSYEEDSELKPSGQGGLDEEEAFLDR----------TAKRE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 310 AALALSEQKALDLRELLTTTDQEHRSLVQKQAKDHRLEQQEAAERESKLlkdliaaneKNLLLRNQVDELEQKVKSQQEQ 389
Cdd:pfam02029 73 ERRQKRLQEALERQKEFDPTIADEKESVAERKENNEEEENSSWEKEEKR---------DSRLGRYKEEETEIREKEYQEN 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 390 LFLTREELTNTSAELKMRVVQAEERLElEKRRSRQSLEYLEQLRSKEVEHMTRHLEENERAMVERiqrleAARLALEEEL 469
Cdd:pfam02029 144 KWSTEVRQAEEEGEEEEDKSEEAEEVP-TENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEV-----KSQNGEEEVT 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 470 SRVKTVALSERIQAEEELIKAKSQVRLEEQQHLahleEKLRLLALARDEAQSTCLQQRQMVAEaqtqasqlgLQVEGLKR 549
Cdd:pfam02029 218 KLKVTTKRRQGGLSQSQEREEEAEVFLEAEQKL----EELRRRRQEKESEEFEKLRQKQQEAE---------LELEELKK 284
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2753756263 550 RLEKLQQELSNKDQEKVAEVTRVRVELQEQKGHLQAELTaqealKEKMAALERQLKM 606
Cdd:pfam02029 285 KREERRKLLEEEEQRRKQEEAERKLREEEEKRRMKEEIE-----RRRAEAAEKRQKL 336
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
229-664 |
8.18e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 8.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 229 DREATFRENQARIHVLSKEVQHLWEEK------SKQFLDPVETTDKQQEEMVQSSRTSTARVGQLQEALNERHSIINTLK 302
Cdd:pfam15921 423 DRNMEVQRLEALLKAMKSECQGQMERQmaaiqgKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLT 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 303 AKLQMTEAALALSEQKALDLRELLTTTDQEHRSLvqKQAKDHRleqqEAAERESKLLKDLIAANEKNL-LLRNQVDELEQ 381
Cdd:pfam15921 503 ASLQEKERAIEATNAEITKLRSRVDLKLQELQHL--KNEGDHL----RNVQTECEALKLQMAEKDKVIeILRQQIENMTQ 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 382 KVKSQQEQLFLTREELTNTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKEVEHMTRHLEENERAMVERIQRLEAA 461
Cdd:pfam15921 577 LVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERD 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 462 RLALEEELSRVKTVALSEriqaEEELIKAKSQVRLEEqqhlahLEEKLRLLALARDEAQSTCLQQRQMVAEA-------- 533
Cdd:pfam15921 657 QLLNEVKTSRNELNSLSE----DYEVLKRNFRNKSEE------METTTNKLKMQLKSAQSELEQTRNTLKSMegsdgham 726
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 534 ------QTQASQLGLQVEGLKRRLEKLQQELSNKDQEKVAevtrvrveLQEQKGHLQAELTAQEALKEKMA-------AL 600
Cdd:pfam15921 727 kvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHF--------LKEEKNKLSQELSTVATEKNKMAgelevlrSQ 798
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2753756263 601 ERQLKMMANDHREALLDRESENASLQEKLRLKEAEVARIRDEEAQRARFLQNAvlAYVQGSSLR 664
Cdd:pfam15921 799 ERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGP--GYTSNSSMK 860
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
253-601 |
1.35e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 253 EEKSKQFLDPVETTDKQQEEMVQSSRTSTARVGQLQEALNERHSIINTLKAKLQMTEAALalsEQKALDLRELLTTTDQE 332
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL---SEKQKELEQNNKKIKEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 333 HRSLVQKQAKDHRLEQQEAAEReSKLLKDLIAANEKNLL-LRNQVDELEQKV---KSQQEQLFLTREELTNTSAELKMRV 408
Cdd:TIGR04523 287 EKQLNQLKSEISDLNNQKEQDW-NKELKSELKNQEKKLEeIQNQISQNNKIIsqlNEQISQLKKELTNSESENSEKQREL 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 409 VQAEERLELEKRRSRQSLEYLEQLRSK--EVEHMTRHLEENERAMVERIQRLEAARLALEEELSRVKtvalseriqaeEE 486
Cdd:TIGR04523 366 EEKQNEIEKLKKENQSYKQEIKNLESQinDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK-----------ET 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 487 LIKAKSQVRleeqqhlaHLEEKLRLLALARDEAQSTCLQQrqmvaeaQTQASQLGLQVEGLKRRLEKLQQELSNKDQEkV 566
Cdd:TIGR04523 435 IIKNNSEIK--------DLTNQDSVKELIIKNLDNTRESL-------ETQLKVLSRSINKIKQNLEQKQKELKSKEKE-L 498
|
330 340 350
....*....|....*....|....*....|....*
gi 2753756263 567 AEVTRVRVELQEQKGHLQAEltaQEALKEKMAALE 601
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKK---ISSLKEKIEKLE 530
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
277-667 |
1.38e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 277 SRTSTARVGQLQEALnerhsiinTLKAKLQMTEAALALSEQKALDLRELLTTTDQEHRSLVQ--KQAKDHR------LEQ 348
Cdd:PRK04863 275 MRHANERRVHLEEAL--------ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdyQAASDHLnlvqtaLRQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 349 QEAAERESKLLKDLIA-----------ANEKNLLLRNQVDELEQKVKSQQEQL--FLTREELTNTSAELKMRVVQAEER- 414
Cdd:PRK04863 347 QEKIERYQADLEELEErleeqnevveeADEQQEENEARAEAAEEEVDELKSQLadYQQALDVQQTRAIQYQQAVQALERa 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 415 ---LELEKRRSRQSLEYLEQLRSKEVEhmtrhLEENERAMVERIQRLEAARLALEEELSRVKTVALS-ERIQAEEeliKA 490
Cdd:PRK04863 427 kqlCGLPDLTADNAEDWLEEFQAKEQE-----ATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEvSRSEAWD---VA 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 491 KSQVR-LEEQQHLAHLEEKLR--LLALARDEAQSTclQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKvA 567
Cdd:PRK04863 499 RELLRrLREQRHLAEQLQQLRmrLSELEQRLRQQQ--RAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESV-S 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 568 EVTRVRVELQEQKGHLQA---ELTAQE----ALKEKMAALERQLKmmandhrEALLDRESENASLQEKL-RLKEAEVARI 639
Cdd:PRK04863 576 EARERRMALRQQLEQLQAriqRLAARApawlAAQDALARLREQSG-------EEFEDSQDVTEYMQQLLeRERELTVERD 648
|
410 420
....*....|....*....|....*...
gi 2753756263 640 RDEEAQRARFLQNAVLAYVQGSSLRALN 667
Cdd:PRK04863 649 ELAARKQALDEEIERLSQPGGSEDPRLN 676
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
212-630 |
1.44e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 212 IPSDVLRAVEQAMVYNQDREATFRENQARIHVLSKEVQHLWEEKSKQfldpveTTDKQQEEMVQSSRTSTARVGQLQEAL 291
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL------REELEKLEKLLQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 292 NERHSIINTLKAKLQMTEAALALSEQKALDLRELLTTTDQEHRSL---VQKQAKDHRLEQQEAAERESKLLKDLIAANEK 368
Cdd:COG4717 142 AELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLslaTEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 369 NLLLRNQVDELEQKVKSQQEQLFLTREELTNTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKEVEHMTRHLEENE 448
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 449 RAMVERIQRLEAARLALEEELSRVKTVALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQ 528
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 529 MVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKVAEV-----TRVRVELQEQKGHLQAELTAQEALKEKMAALERQ 603
Cdd:COG4717 382 EDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLealdeEELEEELEELEEELEELEEELEELREELAELEAE 461
|
410 420
....*....|....*....|....*....
gi 2753756263 604 LKMMANDHR--EALLDRESENASLQEKLR 630
Cdd:COG4717 462 LEQLEEDGElaELLQELEELKAELRELAE 490
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
334-571 |
1.88e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 334 RSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVDELEQKVKSQQEQLFLTR-------EELTNTSAELKM 406
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeekkkaEELKKAEEENKI 1661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 407 RVVQAEERLELEKRRSRQSLEYLEQLRSKEvEHMTRhlEENERAMVERIQRLEAARLALEEELsrvktvalseRIQAEEE 486
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAA-EALKK--EAEEAKKAEELKKKEAEEKKKAEEL----------KKAEEEN 1728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 487 LIKAKSQVRLEEqqhlahlEEKLRLLALARDEAQSTCLQQRQMVAEAQTQasqlglqvEGLKRRLEKLQQELSNKDQEKV 566
Cdd:PTZ00121 1729 KIKAEEAKKEAE-------EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE--------EIRKEKEAVIEEELDEEDEKRR 1793
|
....*
gi 2753756263 567 AEVTR 571
Cdd:PTZ00121 1794 MEVDK 1798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
234-500 |
2.38e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 234 FRENQARIHVLSKEVQHLWEEKSKQfldpVETTDKQQEEMVQSSRTSTARVGQLQEALNERHSIINTLKAKLQMTEAALA 313
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAE----LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 314 LSEQKALDLRELLTTT------DQEHRSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVDELEQKVKSQQ 387
Cdd:TIGR02168 313 NLERQLEELEAQLEELeskldeLAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 388 EQLFLTREELTNTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKEVEHMTRHLEENERAMVERIQRLEAARLALEE 467
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270
....*....|....*....|....*....|...
gi 2753756263 468 elsrvktvALSERIQAEEELIKAKSQVRLEEQQ 500
Cdd:TIGR02168 473 --------AEQALDAAERELAQLQARLDSLERL 497
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
372-476 |
3.92e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.69 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 372 LRNQVDELEQKVKSQQEQLfltrEELTNTSAELKMRVVQA--EERLELEKRRSRQSLEY-LEQLRsKEVEHMTRHLEENE 448
Cdd:COG2433 418 LEEQVERLEAEVEELEAEL----EEKDERIERLERELSEArsEERREIRKDREISRLDReIERLE-RELEEERERIEELK 492
|
90 100
....*....|....*....|....*....
gi 2753756263 449 RamveRIQRL-EAARLALEEELSRVKTVA 476
Cdd:COG2433 493 R----KLERLkELWKLEHSGELVPVKVVE 517
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
396-638 |
5.22e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 396 ELTNTSAELKMRVVQA------EERLELEKRRSRQSLEYLEQlRSKEVEhmtrhleeneramveriQRLEAARLALEEEL 469
Cdd:COG3206 141 SYTSPDPELAAAVANAlaeaylEQNLELRREEARKALEFLEE-QLPELR-----------------KELEEAEAALEEFR 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 470 SRVKTVALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLL--ALARDEAQSTCLQQRQMVAEAQTQASQLGLQ---- 543
Cdd:COG3206 203 QKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALraQLGSGPDALPELLQSPVIQQLRAQLAELEAElael 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 544 ----------VEGLKRRLEKLQQELSNKDQEKVAEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQLKMMAndhRE 613
Cdd:COG3206 283 sarytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLE---RE 359
|
250 260
....*....|....*....|....*
gi 2753756263 614 ALLDRESENASLQeklRLKEAEVAR 638
Cdd:COG3206 360 VEVARELYESLLQ---RLEEARLAE 381
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
366-646 |
5.42e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 5.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 366 NEKNLLLRNQVDELEQKVKSQQEQLFLTREELTNTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKE---VEHMTR 442
Cdd:PTZ00121 1079 FDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEdakRVEIAR 1158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 443 HLEENERAMVER----IQRLEAARLALE----------EELSRVKTVALSERIQAEEELIKAKSQVRLEEQQHLAHL--- 505
Cdd:PTZ00121 1159 KAEDARKAEEARkaedAKKAEAARKAEEvrkaeelrkaEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAkkd 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 506 EEKLRLLALARDEAQSTCLQQRQMVAEAQTQA---SQLGLQVEGLKRRLEKLQQELSNKDQEKvAEVTRVRVELQEQKGH 582
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAaikAEEARKADELKKAEEKKKADEAKKAEEK-KKADEAKKKAEEAKKA 1317
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2753756263 583 LQAELTAQEAlKEKMAALERqlKMMANDHREALLDRESENASLQEKLRLKEAEVARIRDEEAQR 646
Cdd:PTZ00121 1318 DEAKKKAEEA-KKKADAAKK--KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
395-646 |
5.63e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 5.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 395 EELTNTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKevehmTRHLEENERAMVERIQRLEAARLALEEELSRVKt 474
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREE-----LEKLEKEVKELEELKEEIEELEKELESLEGSKR- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 475 vALSERIQAEEELIKAKSQvRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKL 554
Cdd:PRK03918 256 -KLEEKIRELEERIEELKK-EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 555 qqelsNKDQEKVAEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQLKMMANDHREAlLDRESENAS-----LQEKL 629
Cdd:PRK03918 334 -----EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK-LEKELEELEkakeeIEEEI 407
|
250
....*....|....*..
gi 2753756263 630 RLKEAEVARIRDEEAQR 646
Cdd:PRK03918 408 SKITARIGELKKEIKEL 424
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
253-541 |
5.78e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 5.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 253 EEKSKQFLDPVETT-DKQQEEMVQS----------SRTSTARVGQLQEALNERHSIINTLKAKLqMTEaalalsEQKALD 321
Cdd:PRK10929 25 EKQITQELEQAKAAkTPAQAEIVEAlqsalnwleeRKGSLERAKQYQQVIDNFPKLSAELRQQL-NNE------RDEPRS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 322 LRELLTTTDQEHRSLvqkQAKDHRLEQQEAAERESKLLKDLiaANEKNLLLRNQVD------ELEQKVKSQ--------Q 387
Cdd:PRK10929 98 VPPNMSTDALEQEIL---QVSSQLLEKSRQAQQEQDRAREI--SDSLSQLPQQQTEarrqlnEIERRLQTLgtpntplaQ 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 388 EQLFLTREEltntSAELKMRVVQAE--------------ERLELEKRRSRQSLEYLEQLRSKevehmtrhleeneramvE 453
Cdd:PRK10929 173 AQLTALQAE----SAALKALVDELElaqlsannrqelarLRSELAKKRSQQLDAYLQALRNQ-----------------L 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 454 RIQRLEAARLALEeelsrvKTVALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEA 533
Cdd:PRK10929 232 NSQRQREAERALE------STELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTL 305
|
....*...
gi 2753756263 534 QTQASQLG 541
Cdd:PRK10929 306 REQSQWLG 313
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
408-634 |
6.11e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.49 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 408 VVQAEERLELEKRRSRQSleylEQLRSKEVEHMTRHLEENERAMVERIQRLEAARLALEEelsrvktvalsERIQAEEEL 487
Cdd:PRK09510 60 VVEQYNRQQQQQKSAKRA----EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQE-----------QKKQAEEAA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 488 IKAKSQVRL-EEQQHLAHLEEKLRllalARDEAQSTCLQQRQMVAEAQTQAsqlglQVEGLKRRLEKLQQELSNKDQEKV 566
Cdd:PRK09510 125 KQAALKQKQaEEAAAKAAAAAKAK----AEAEAKRAAAAAKKAAAEAKKKA-----EAEAAKKAAAEAKKKAEAEAAAKA 195
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2753756263 567 AevtrvrvELQEQKGHLQAELTAQEALKEKMAALERQLKMMANDHREALLDRESENASLQEKLRLKEA 634
Cdd:PRK09510 196 A-------AEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAA 256
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
284-610 |
6.60e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 6.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 284 VGQLQEALNERHsiiNTLKAKLQMTEAALALSEQKALDLRELLTTTDQEHRSL---VQKQAKD-HRLEQQEAAERE-SKL 358
Cdd:pfam15921 326 VSQLRSELREAK---RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLddqLQKLLADlHKREKELSLEKEqNKR 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 359 LKDLIAANEKNL-LLRNQVDELEQKVKsQQEQLFLTREELTNTSAELKMRVVQAEErlelekrrsrQSLEyleqlrskEV 437
Cdd:pfam15921 403 LWDRDTGNSITIdHLRRELDDRNMEVQ-RLEALLKAMKSECQGQMERQMAAIQGKN----------ESLE--------KV 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 438 EHMTRHLEENERAMVERIQRLEAARLALEEELSRVK--TVALSERIQAEE----ELIKAKSQV--RLEEQQHLAHLEEKL 509
Cdd:pfam15921 464 SSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSdlTASLQEKERAIEatnaEITKLRSRVdlKLQELQHLKNEGDHL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 510 RllalardeaqstclqqrqmvaEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQeKVAEVTRVRVELQEQKGHLQAELTA 589
Cdd:pfam15921 544 R---------------------NVQTECEALKLQMAEKDKVIEILRQQIENMTQ-LVGQHGRTAGAMQVEKAQLEKEIND 601
|
330 340
....*....|....*....|....*...
gi 2753756263 590 Q-------EALKEKMAALERQLKMMAND 610
Cdd:pfam15921 602 RrlelqefKILKDKKDAKIRELEARVSD 629
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
347-557 |
7.59e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 347 EQQEAAERESKLLKDLIAAneknllLRNQVDELEQKVKSQQEQLFLTREELTNTSAELKMRVVQAE-ERLELEKRRSRQS 425
Cdd:COG4913 610 AKLAALEAELAELEEELAE------AEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREiAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 426 leyleqlrSKEVEHMTRHLEENEramvERIQRLEAARLALEEELSRVKtvalSERIQAEEELIKAKSQV----RLEEQQH 501
Cdd:COG4913 684 --------SDDLAALEEQLEELE----AELEELEEELDELKGEIGRLE----KELEQAEEELDELQDRLeaaeDLARLEL 747
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2753756263 502 LAHLEEKLRLLALARdeaqstclQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQE 557
Cdd:COG4913 748 RALLEERFAAALGDA--------VERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
286-647 |
8.29e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 8.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 286 QLQEALNERHSIINTLKAKLQMTEAALALSEQKALDLRELLTTTDQEHRSLVQKQAKDHRLEQQEAAERESKLLKDLIAA 365
Cdd:TIGR00618 212 CMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 366 NEKNLLLRNQVDELEQKVKSQQEQLFLTREELtnTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKEVEHMTRHLE 445
Cdd:TIGR00618 292 AAPLAAHIKAVTQIEQQAQRIHTELQSKMRSR--AKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIRE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 446 ENER--AMVERIQRLEAARLALEEELSRVKtvALSERIQAEEELIKAKSQVRLEEQQHLAHL--EEKLRLLALARDEAQS 521
Cdd:TIGR00618 370 ISCQqhTLTQHIHTLQQQKTTLTQKLQSLC--KELDILQREQATIDTRTSAFRDLQGQLAHAkkQQELQQRYAELCAAAI 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 522 TCLQQRQMVAEAQTQASQLGLQVeglKRRLEKLQQELSNKDQEKVAEVTRVRVELQEQK-------GHLQAELTAQEALK 594
Cdd:TIGR00618 448 TCTAQCEKLEKIHLQESAQSLKE---REQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplcgscIHPNPARQDIDNPG 524
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 2753756263 595 EKMAALERQLKMMANdHREALLDRESENASLQEKLRLKEAEVARIRDEEAQRA 647
Cdd:TIGR00618 525 PLTRRMQRGEQTYAQ-LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT 576
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
289-605 |
9.73e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 9.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 289 EALNERHSIINTLKAKLQMTEAALALSEQKALDLRELLTTTDQEHRSLVQKQAKDHRLEqqEAAERESKLLKDLIAANEK 368
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK--EKAEEYIKLSEFYEEYLDE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 369 NLLLRNQVDELEQKVKSQQEQLfLTREELTNTSAELKMRVVQAEERLE-LEKR-----RSRQSLEYLEQLRSK----EVE 438
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRLEeLEERhelyeEAKAKKEELERLKKRltglTPE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 439 HMTRHLEENERAMVEriqrLEAARLALEEELSRVKTVAlSERIQAEEELIKAKSQV----RLEEQQH------------- 501
Cdd:PRK03918 388 KLEKELEELEKAKEE----IEEEISKITARIGELKKEI-KELKKAIEELKKAKGKCpvcgRELTEEHrkelleeytaelk 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 502 -----LAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQAsqlglQVEGLKRRLEKLQQELSNKDQEKVAEVTRVRVEL 576
Cdd:PRK03918 463 riekeLKEIEEKERKLRKELRELEKVLKKESELIKLKELAE-----QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKL 537
|
330 340
....*....|....*....|....*....
gi 2753756263 577 QEQKGHLQAELTAQEALKEKMAALERQLK 605
Cdd:PRK03918 538 KGEIKSLKKELEKLEELKKKLAELEKKLD 566
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
298-512 |
1.19e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 298 INTLKAKLQMTEAALALSEQKALDLRELLTTTDQEHRSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVD 377
Cdd:COG1196 563 IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 378 ELEQKVKSQQEQLFLTREELTNTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKEVEHMTRHLEENERAMVERIQR 457
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2753756263 458 LEAARLALEEELSRVKTVALSERIQAEEELIKAKS--QVRLEEQQHLAHLEEKLRLL 512
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPepPDLEELERELERLEREIEAL 779
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
238-499 |
1.26e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 238 QARIHVLSKEVQHLWEEKSKQFLDPVETTDKQQeeMVQSSRTST-----ARVGQLQEA---LNERHSI---INTLKAKLQ 306
Cdd:PLN02939 103 QRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVG--MIQNAEKNIlllnqARLQALEDLekiLTEKEALqgkINILEMRLS 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 307 MTEAALALSEQKALDLrELLtttdqehRSLVQKQAKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVDELEQK---V 383
Cdd:PLN02939 181 ETDARIKLAAQEKIHV-EIL-------EEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAElieV 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 384 KSQQEQLFLTREE---LTNTSAELKMRVVQAEErlELEKRRSRQ---------SLEYLEQLRSKEVEHMTRHLEENeRAM 451
Cdd:PLN02939 253 AETEERVFKLEKErslLDASLRELESKFIVAQE--DVSKLSPLQydcwwekveNLQDLLDRATNQVEKAALVLDQN-QDL 329
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2753756263 452 VERIQRLEAarlALEE-----------ELSRVKTVALSERIQAEEELIkaKSQVRLEEQ 499
Cdd:PLN02939 330 RDKVDKLEA---SLKEanvskfssykvELLQQKLKLLEERLQASDHEI--HSYIQLYQE 383
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
146-212 |
1.31e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 37.50 E-value: 1.31e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2753756263 146 LRQLDLRNNQISHQGTEelalALKSNTGLQQLDLRWNNIGLLGGQALVnCLPSnrtLRRLELVGNNI 212
Cdd:pfam13855 3 LRSLDLSNNRLTSLDDG----AFKGLSNLKVLDLSNNLLTTLSPGAFS-GLPS---LRYLDLSGNRL 61
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
347-643 |
1.36e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 347 EQQEAAERESKllkdliaaNEKNLLLRNQVDELEQKVKSQQEQLFLTREELTntSAELKMRVVQAEERLELEKRRSRQSL 426
Cdd:pfam15921 245 DQLEALKSESQ--------NKIELLLQQHQDRIEQLISEHEVEITGLTEKAS--SARSQANSIQSQLEIIQEQARNQNSM 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 427 eYLEQLRSKE--VEHMTRHLEENERAMVERIQRLEAARLALEEELSRVKTvalsERIQAEEELIKAKSQVrleeQQHLAH 504
Cdd:pfam15921 315 -YMRQLSDLEstVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEART----ERDQFSQESGNLDDQL----QKLLAD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 505 LEEKLRLLALARDeaQSTCLQQRQM-----VAEAQTQASQLGLQVEGLKRRLEKLQQELS-------------NKDQEKV 566
Cdd:pfam15921 386 LHKREKELSLEKE--QNKRLWDRDTgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQgqmerqmaaiqgkNESLEKV 463
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2753756263 567 AEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQLKMMANDHREALLDRESENASLQEKLRLKEAEVARIRDEE 643
Cdd:pfam15921 464 SSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG 540
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
445-649 |
1.83e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 445 EENERAMVERIQRLEAARLALEEELSRVKTvalsERIQAEEELIKAKSqvRLEE----QQHLAHLEEKLRLLALARDEAQ 520
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEE----QREQARETRDEADE--VLEEheerREELETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 521 STCLQQRQMVAEAQTQASQLGLQVEGL----------KRRLEKLQQELSNKDQEkvaevtrVRVELQEQKGHLQAELTAQ 590
Cdd:PRK02224 272 REREELAEEVRDLRERLEELEEERDDLlaeaglddadAEAVEARREELEDRDEE-------LRDRLEECRVAAQAHNEEA 344
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 591 EALKEKMAALERQlkmmANDHREALLDRESENASLQEKLRLKEAEVARIRDE-EAQRARF 649
Cdd:PRK02224 345 ESLREDADDLEER----AEELREEAAELESELEEAREAVEDRREEIEELEEEiEELRERF 400
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
395-648 |
2.28e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 395 EELTNTSAELKMRVVQAEERLELEKRRSRQSLEYLEQLRSKEVEHMTRHLEENERAMVERIQRLEAARLALEEELSrvkt 474
Cdd:pfam02463 179 IEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE---- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 475 vALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKL 554
Cdd:pfam02463 255 -SSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 555 QQELSNKDQEKvAEVTRVRVELQEQKGHLQAELTAQEALKEKMAALERQLKMMANDhREALLDRESENASLQEKLRLKEA 634
Cdd:pfam02463 334 KEEIEELEKEL-KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSS-AAKLKEEELELKSEEEKEAQLLL 411
|
250
....*....|....
gi 2753756263 635 EVARIRDEEAQRAR 648
Cdd:pfam02463 412 ELARQLEDLLKEEK 425
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
42-212 |
2.70e-03 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 40.69 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 42 LTLDTCRALGNLLQKETQLTELILSDCMLSEEGATLLLQGLCTNTVLRFLDLKGNNLQATGAKTLGKLLRQNKSIQSLTL 121
Cdd:COG4886 3 LLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 122 EWNNLGTWEDAFATFCRALVGND--------ALRQLDLRNNQIShqgteELALALKSNTGLQQLDLRWNNIgllggQALV 193
Cdd:COG4886 83 SLLLLGLTDLGDLTNLTELDLSGneelsnltNLESLDLSGNQLT-----DLPEELANLTNLKELDLSNNQL-----TDLP 152
|
170
....*....|....*....
gi 2753756263 194 NCLPSNRTLRRLELVGNNI 212
Cdd:COG4886 153 EPLGNLTNLKSLDLSNNQL 171
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
491-652 |
2.84e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 491 KSQVRLEEQQHLAHLEEKLrllalarDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKVAEVT 570
Cdd:TIGR02168 668 TNSSILERRREIEELEEKI-------EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 571 RVR--VELQEQKGHLQAELTAQEALKEKMAALERQLKMMANDHREAL----LDRESENASLQEKLRLKEAEVARIRDEEA 644
Cdd:TIGR02168 741 EVEqlEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELeaqiEQLKEELKALREALDELRAELTLLNEEAA 820
|
....*...
gi 2753756263 645 QRARFLQN 652
Cdd:TIGR02168 821 NLRERLES 828
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
453-641 |
3.52e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 453 ERIQRLEAARLALEEELSRV---KTVA-----LSERIQAEEEliKAKSQVRLEEQQHLAHLEEKLRllalardeaqstcl 524
Cdd:COG2433 353 ERVEKKVPPDVDRDEVKARVirgLSIEealeeLIEKELPEEE--PEAEREKEHEERELTEEEEEIR-------------- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 525 QQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQE------KVAEVTRVRVELQEQKGHLQAELTAQEALKEKMA 598
Cdd:COG2433 417 RLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEerreirKDREISRLDREIERLERELEEERERIEELKRKLE 496
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2753756263 599 ALERQLKMmanDHREAL-----LDRESENA--SLQEKLRLKEAEVARIRD 641
Cdd:COG2433 497 RLKELWKL---EHSGELvpvkvVEKFTKEAirRLEEEYGLKEGDVVYLRD 543
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
530-634 |
4.09e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 530 VAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQE---KVAEVTRVRVELQEQKGHLQ---------AELTAQEALKEKM 597
Cdd:PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEaeaLLKEAEKLKEELEEKKEKLQeeedklleeAEKEAQQAIKEAK 583
|
90 100 110
....*....|....*....|....*....|....*...
gi 2753756263 598 AALERQLKMMANDHREALLDRESENasLQEKLR-LKEA 634
Cdd:PRK00409 584 KEADEIIKELRQLQKGGYASVKAHE--LIEARKrLNKA 619
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
428-597 |
4.37e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.08 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 428 YLEQLRSKEVEHMTRHLEENERAMVERIQRLEAARLALEEELSRVKTVALSERIQAEEELIKAKSQVRLEEQQHLAHLEE 507
Cdd:PRK12705 26 KKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLEN 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 508 KLrllaLARDEAQSTclqQRQMVAEAQTQASQLGLQVEGLKRrlEKLQQELSNKDQEKVAEVTRVRVELQEQKGHLQAEL 587
Cdd:PRK12705 106 QL----EEREKALSA---RELELEELEKQLDNELYRVAGLTP--EQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAER 176
|
170
....*....|
gi 2753756263 588 TAQEALKEKM 597
Cdd:PRK12705 177 KAQNILAQAM 186
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
338-433 |
4.41e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 40.32 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 338 QKQAKDHRLEQQEAAERESKLLKDLIAaneknlllrnqvdELEQKVKSQQEQLFLTREELTNTSAELKMRVV----QAEE 413
Cdd:PRK11448 161 QAREKAQSQALAEAQQQELVALEGLAA-------------ELEEKQQELEAQLEQLQEKAAETSQERKQKRKeitdQAAK 227
|
90 100
....*....|....*....|
gi 2753756263 414 RLELEKRRSRQSLEylEQLR 433
Cdd:PRK11448 228 RLELSEEETRILID--QQLR 245
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
434-583 |
4.57e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.20 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 434 SKEVEHMTRHLEENERAMVERIQRLEaarlALEEELSRVKtvalseriqaeEELIKAKSQVRLEEQQHLAHLEEKLR-LL 512
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAE----ALLKEAEKLK-----------EELEEKKEKLQEEEDKLLEEAEKEAQqAI 579
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2753756263 513 ALARDEAQSTCLQQRQMvaEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKVAEVT------RVRVELQEQKGHL 583
Cdd:PRK00409 580 KEAKKEADEIIKELRQL--QKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEelkvgdEVKYLSLGQKGEV 654
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
303-513 |
5.08e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 303 AKLQMTEAALALSEQKALDLRELLTTTDQEHRSLvQKQAKDHRLEQQEAAERESKLLKDLIAANEKNLLLRNQVDELEQK 382
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKAL-LKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 383 VKSQQEQL--FLTREELTNTSAELKMRV-----VQAEERLELEKRRSRQSLEYLEQLRS--KEVEHMTRHLEENERAMVE 453
Cdd:COG4942 99 LEAQKEELaeLLRALYRLGRQPPLALLLspedfLDAVRRLQYLKYLAPARREQAEELRAdlAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2753756263 454 RIQRLEAARLALEEELSRVKTV--ALSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLA 513
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLlaRLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
49-215 |
5.98e-03 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 39.53 E-value: 5.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 49 ALGNLlqkeTQLTELILSDCMLSEEGATLllqGLCTNtvLRFLDLKGNNLqaTGAKTLGKLlrqnKSIQSLTLEWNNLGT 128
Cdd:COG4886 200 PLGNL----TNLEELDLSGNQLTDLPEPL---ANLTN--LETLDLSNNQL--TDLPELGNL----TNLEELDLSNNQLTD 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 129 WEDafatfcraLVGNDALRQLDLRNNQISHQGTEELALALKSNTGLQQLDLRWNNIGLLGGQALVNCLPSNRTLRRLELV 208
Cdd:COG4886 265 LPP--------LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVT 336
|
....*..
gi 2753756263 209 GNNIPSD 215
Cdd:COG4886 337 LTTLALS 343
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
499-579 |
6.00e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 39.93 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 499 QQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQTQASQLGLQVEGLKRRLEKLQQELSNKDQEKVAEVTRV------ 572
Cdd:PRK11448 148 QQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEItdqaak 227
|
....*..
gi 2753756263 573 RVELQEQ 579
Cdd:PRK11448 228 RLELSEE 234
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
460-570 |
6.34e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 39.68 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753756263 460 AARLALE-----EELSRVKtvalSERIQAEEELIKAKSQVRLEEQQHLAHLEEKLRLLALARDEAQSTCLQQRQMVAEAQ 534
Cdd:COG0542 399 AARVRMEidskpEELDELE----RRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQ 474
|
90 100 110
....*....|....*....|....*....|....*....
gi 2753756263 535 TQASQLGLQ---VEGLKRRLEKLQQELSNKDQEKVAEVT 570
Cdd:COG0542 475 ELKEELEQRygkIPELEKELAELEEELAELAPLLREEVT 513
|
|
| |
