|
Name |
Accession |
Description |
Interval |
E-value |
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
7-318 |
8.65e-101 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 299.10 E-value: 8.65e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQGYFKERVLELNASNQRGIEMVR 85
Cdd:PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKEKnMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 86 TTLKNYAMqdvTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPK 165
Cdd:PRK00440 87 NKIKEFAR---TAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 166 EIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKlSQGINHSVTPQDISNVAGVVPSKEITEIIHLCQNGS 245
Cdd:PRK00440 164 EAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQA-AAATGKEVTEEAVYKITGTARPEEIREMIELALNGD 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 67478786 246 vndlYLKAMS----LVVEQNFSADSILSQL-RDVYIEDcvnLTNQERCLFLQLIAQSDATLIDKTDPLFTICALLCSL 318
Cdd:PRK00440 243 ----FTEAREklrdLMIDYGLSGEDIIKQIhREVWSLD---IPEELKVELIDAIGEADFRITEGANERIQLEALLAKL 313
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
7-271 |
2.18e-70 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 221.53 E-value: 2.18e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQGYFKERVLELNASNQRGIEMVR 85
Cdd:PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDGnMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 86 TTLKNYAMQDVTHYDGTpdYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPK 165
Cdd:PLN03025 83 NKIKMFAQKKVTLPPGR--HKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 166 EIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHsVTPQDISNVAGVVPSKEITEIIHLCQNGS 245
Cdd:PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGF-VNQENVFKVCDQPHPLHVKNIVRNCLKGK 239
|
250 260
....*....|....*....|....*.
gi 67478786 246 VNDLYLKAMSLvVEQNFSADSILSQL 271
Cdd:PLN03025 240 FDDACDGLKQL-YDLGYSPTDIITTL 264
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
7-318 |
6.88e-62 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 200.22 E-value: 6.88e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQGYFKERVLELNASN--QRG--- 80
Cdd:PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSPnLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADffDQGkky 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 81 ---------------------IEMVRTTLKNYA-MQDVthyDGtpDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFC 138
Cdd:PRK12402 85 lvedprfahflgtdkrirsskIDNFKHVLKEYAsYRPL---SA--DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 139 LICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQkLSQGINHSVT 218
Cdd:PRK12402 160 IATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQ-TAALAAGEIT 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 219 PQDISNVAGVVPSKE-ITEIIHLCQNGSVNDLYLKAMSLVVEQNFSADSILSQLRDV----YIEDcvnltnqERCLFLQL 293
Cdd:PRK12402 239 MEAAYEALGDVGTDEvIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVarsrYRGD-------NLARLHRL 311
|
330 340
....*....|....*....|....*
gi 67478786 294 IAQSDATLIDKTDPLFTICALLCSL 318
Cdd:PRK12402 312 AADADARLTDGANDRIQLEALLAEL 336
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
51-315 |
1.68e-51 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 182.35 E-value: 1.68e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 51 TTSILAVAHELFQGYFKERVLELNASNQRGIEMVRTTLKNYAMqdvTHYDGTPDYKLIILDESDALTPDAQTALRRMMED 130
Cdd:PRK04132 580 TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFAR---TKPIGGASFKIIFLDEADALTQDAQQALRRTMEM 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 131 FTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKlS 210
Cdd:PRK04132 657 FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQA-A 735
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 211 QGINHSVTPQDISNVAGVVPSKEITEIIHLCQNGSVNDLYLKAMSLVVEQNFSADSILSQL-RDVYiedcvNLTNQER-- 287
Cdd:PRK04132 736 AALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMhREVF-----NLPIDEPkk 810
|
250 260
....*....|....*....|....*...
gi 67478786 288 CLFLQLIAQSDATLIDKTDPLFTICALL 315
Cdd:PRK04132 811 VELADKIGEYNFRLVEGANEMIQLEALL 838
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
22-212 |
9.74e-42 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 146.66 E-value: 9.74e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 22 QEEVIKLLKSSLNSG--LPNLLFFGPPGSGKTTSILAVAHELF---------QGYFKER---------VLELNA---SNQ 78
Cdd:COG0470 1 QEEAWEQLLAAAESGrlPHALLLHGPPGIGKTTLALALARDLLcenpeggkaCGQCHSRlmaagnhpdLLELNPeekSDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 79 RGIEMVRTtLKNYAMQdVTHYDGtpdYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKF 158
Cdd:COG0470 81 IGIDQIRE-LGEFLSL-TPLEGG---RKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVI 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 67478786 159 RFSALPKEIVSNRLQmiceKEGfsVTNEAIQAVSILSEGDLRYGIGLLQKLSQG 212
Cdd:COG0470 156 RFRPPSEEEALAWLR----EEG--VDEDALEAILRLAGGDPRAAINLLQALAGR 203
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
1-243 |
1.19e-39 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 141.67 E-value: 1.19e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 1 MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGP-PGSGKTTSILAVAHELfqGYfkeRVLELNASNQ 78
Cdd:PHA02544 5 NPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGrIPNMLLHSPsPGTGKTTVAKALCNEV--GA---EVLFVNGSDC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 79 RgIEMVRTTLKNYAmQDVTHydgTPDYKLIILDESD-ALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIK 157
Cdd:PHA02544 80 R-IDFVRNRLTRFA-STVSL---TGGGKVIIIDEFDrLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 158 FRFS--------ALPKEIVsNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQ------KLSQGINHSVTPQDIS 223
Cdd:PHA02544 155 IDFGvptkeeqiEMMKQMI-VRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQryastgKIDAGILSEVTNSDID 233
|
250 260
....*....|....*....|
gi 67478786 224 NVAGVVPSKEITEIIHLCQN 243
Cdd:PHA02544 234 DVVEALKAKDFKAVRALAPN 253
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
7-227 |
8.28e-38 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 140.44 E-value: 8.28e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNS---GLPN--LLFFGPPGSGKTTSILAVAHElfqgyFKERVLELNASNQRG- 80
Cdd:PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESwlkGKPKkaLLLYGPPGVGKTSLAHALAND-----YGWEVIELNASDQRTa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 81 --IEmvRTTLKNYAMQDVTHYDGtpdyKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLIC---NYISRILPPISSRC 155
Cdd:PRK04195 79 dvIE--RVAGEAATSGSLFGARR----KLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILtanDPYDPSLRELRNAC 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 67478786 156 IKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHsVTPQDISNVAG 227
Cdd:PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGK-LTLEDVKTLGR 223
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
6-246 |
1.98e-31 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 123.01 E-value: 1.98e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 6 AWSEKYRPKTLDDVQGQEEVIKLLKSS--LNSGLPNLLFFGPPGSGKTT--SILAVA------------------HELFQ 63
Cdd:PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAvkLQRVSHAYIFAGPRGTGKTTiaRILAKVlnclnpqegepcgkcencVEIDK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 64 GYFKErVLELNASNQRGIEMVRttlknyAMQDVTHYdgTP---DYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLI 140
Cdd:PRK14953 85 GSFPD-LIEIDAASNRGIDDIR------ALRDAVSY--TPikgKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILC 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 141 CNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQ 220
Cdd:PRK14953 156 TTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIK 235
|
250 260
....*....|....*....|....*.
gi 67478786 221 DISNVAGVVPSKEITEIIHLCQNGSV 246
Cdd:PRK14953 236 VVEEFLGIVSQESVRKFLNLLLESDV 261
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
10-246 |
1.26e-28 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 114.86 E-value: 1.26e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTT--SILAVA------------------HELFQGYFK 67
Cdd:PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKNSIShaYIFAGPRGTGKTTvaRILAKSlncenrkgvepcnecracRSIDEGTFM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 68 ErVLELNASNQRGIEMVRT---TLKNYAMQDvthydgtpDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYI 144
Cdd:PRK14962 87 D-VIELDAASNRGIDEIRKirdAVGYRPMEG--------KYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 145 SRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISN 224
Cdd:PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHE 237
|
250 260
....*....|....*....|..
gi 67478786 225 VAGVVPSKEITEIIHLCQNGSV 246
Cdd:PRK14962 238 ALGLIPIEVVRDYINAIFNGDV 259
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
13-276 |
3.66e-28 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 111.44 E-value: 3.66e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 13 PKTLDDVQGQEEVIKLLKSSLNSG-LPN-LLFFGPPGSGKTTS--ILAVAheLF----------------QGYFKER--- 69
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGrLAHaYLFTGPRGVGKTTLarILAKA--LNcengptgepcgecescRAIAAGShpd 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 70 VLEL--NASNqRGIEMVRTTLKN--YAmqdvthydgtP---DYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICN 142
Cdd:COG2812 84 VIEIdaEASN-IGVDDIRELIEKvsYA----------PvegRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATT 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 143 YISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQklsQGINHSVTPQDi 222
Cdd:COG2812 153 EPQKLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLD---QAIAFGLLDRR- 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 67478786 223 snvagvvpsKEITEIIHLCQNGSVNDLyLKAMSLVVEQNFSADSILSQL----RDVYI 276
Cdd:COG2812 229 ---------ELLLDLLEALLAGDVAAL-LALAEELAKRGRDLKRFLDDLlsllRDLLL 276
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
9-276 |
2.56e-22 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 97.61 E-value: 2.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 9 EKYRPKTLDDVQGQEEVIK-LLKSSLNSGLPN-LLFFGPPGSGKTT--SILAVAH-----------------ELFQGYFK 67
Cdd:PRK05896 8 RKYRPHNFKQIIGQELIKKiLVNAILNNKLTHaYIFSGPRGIGKTSiaKIFAKAInclnpkdgdccnscsvcESINTNQS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 68 ERVLELNASNQRGIEMVRTTLKNyamqdVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRI 147
Cdd:PRK05896 88 VDIVELDAASNNGVDEIRNIIDN-----INYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 148 LPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAG 227
Cdd:PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFG 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 67478786 228 VVPSKEITEIIHLCQNGSV-------NDLYLKAMSLVVeqnFSADsILSQLRDVYI 276
Cdd:PRK05896 243 LVDNNKKINLIELIQKNDIeelrnliNELESKGINFEA---FCRD-LINLLIDLLV 294
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
1-230 |
4.66e-21 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 93.30 E-value: 4.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 1 MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSL--NSGLPNLLFFGPPGSGKTT--SILAVA---------HELFQGYF- 66
Cdd:PRK06305 1 MTSYQVSSRKYRPQTFSEILGQDAVVAVLKNALrfNRAAHAYLFSGIRGTGKTTlaRIFAKAlncqnptedQEPCNQCAs 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 67 -KE-------RVLELNASNQRGIEMVRTTlknyaMQDVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFC 138
Cdd:PRK06305 81 cKEissgtslDVLEIDGASHRGIEDIRQI-----NETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 139 LICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLR-------YGIGLLQKlsq 211
Cdd:PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRdaeslydYVVGLFPK--- 232
|
250
....*....|....*....
gi 67478786 212 ginhSVTPQDISNVAGVVP 230
Cdd:PRK06305 233 ----SLDPDSVAKALGLLS 247
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
6-259 |
1.11e-20 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 92.96 E-value: 1.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 6 AWSEKYRPKTLDDVQGQEEVIKLLKSSLNSGlpNL----LFFGPPGSGKTT--SILAVA----H------------ELFQ 63
Cdd:PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN--KIshayLFSGPRGTGKTSvaKIFANAlncsHktdllepcqeciENVN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 64 GYFKerVLELNASNQRGIEMVRTTLKNyamqdVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNY 143
Cdd:PRK07133 85 NSLD--IIEMDAASNNGVDEIRELIEN-----VKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 144 ISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDIS 223
Cdd:PRK07133 158 VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVE 237
|
250 260 270
....*....|....*....|....*....|....*.
gi 67478786 224 NVAGVVPSKEITEIIhlcqngsvNDLYLKAMSLVVE 259
Cdd:PRK07133 238 ELFGLVSNENLINLL--------NLLYSKDIKEVLN 265
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
1-238 |
2.42e-20 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 91.79 E-value: 2.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 1 MSGQnAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSG--LPNLLFFGPPGSGKTTS--ILAVAHELFQGYFKER------- 69
Cdd:PRK14950 1 MTVQ-VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGrvAHAYLFTGPRGVGKTSTarILAKAVNCTTNDPKGRpcgtcem 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 70 -----------VLELNASNQRGIEMVRTTLknyamQDVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFC 138
Cdd:PRK14950 80 craiaegsavdVIEMDAASHTSVDDAREII-----ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 139 LICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVT 218
Cdd:PRK14950 155 LATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEIS 234
|
250 260
....*....|....*....|
gi 67478786 219 PQDISNVAGVVPSKEITEII 238
Cdd:PRK14950 235 LSQVQSLLGISGDEEVKALA 254
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
10-237 |
1.02e-19 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 89.80 E-value: 1.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSG--LPNLLFFGPPGSGKTTS--ILAVAHELFQGYFKE----------------- 68
Cdd:PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTGrvAHAFLFTGARGVGKTSTarILAKALNCEQGLTAEpcnvcppcveitegrsv 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 69 RVLELNASNQRGIEMVRTTLKNyamqdVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRIL 148
Cdd:PRK14965 89 DVFEIDGASNTGVDDIRELREN-----VKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 149 PPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGV 228
Cdd:PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGV 243
|
....*....
gi 67478786 229 VPSKEITEI 237
Cdd:PRK14965 244 VDRRLLLDI 252
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
8-276 |
1.38e-19 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 88.39 E-value: 1.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 8 SEKYRPKTLDDVQGQEEVIKLLKSSL--NSGLPNLLFFGPPGSGKTTSILAVAHELFQ-GY------FKERVLELNASNQ 78
Cdd:PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIenNHLAQALLFCGPRGVGKTTCARILARKINQpGYddpnedFSFNIFELDAASN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 79 RGIEMVRTTLknyamQDVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKF 158
Cdd:PRK14970 88 NSVDDIRNLI-----DQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 159 RFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGVVPSKEITEII 238
Cdd:PRK14970 163 DFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVT 242
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 67478786 239 HLCQNGSVNDLyLKAMSLVVEQNFSADSIL----SQLRDVYI 276
Cdd:PRK14970 243 DLILENKIPEL-LLAFNEILRKGFDGHHFIaglaSHFRDLMV 283
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
21-161 |
1.86e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 83.35 E-value: 1.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 21 GQEEVIKLLKSSL-NSGLPNLLFFGPPGSGKTTSILAVAHELFqgYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHY 99
Cdd:cd00009 2 GQEEAIEALREALeLPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 67478786 100 DGTPDYKLIILDESDALTPDAQTALRRMMEDF------TKNTRFCLICNYIS--RILPPISSRC-IKFRFS 161
Cdd:cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLndlridRENVRVIGATNRPLlgDLDRALYDRLdIRIVIP 150
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
9-227 |
1.88e-19 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 88.22 E-value: 1.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 9 EKYRPKTLDDVQGQEEVI---KLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHElfqgyFKERVLELNASNQrGIEMV 84
Cdd:PRK13342 4 ERMRPKTLDEVVGQEHLLgpgKPLRRMIEAGrLSSMILWGPPGTGKTTLARIIAGA-----TDAPFEALSAVTS-GVKDL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 85 RTTLKNYamQDVTHYDGTPdykLIILDE--------SDALTPDaqtalrrmMEDF--------TKNTRFCLIcnyisril 148
Cdd:PRK13342 78 REVIEEA--RQRRSAGRRT---ILFIDEihrfnkaqQDALLPH--------VEDGtitligatTENPSFEVN-------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 149 PPISSRCIKFRFSAL-PKEIVS--NRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQkLSQGINHSVTPQDISNV 225
Cdd:PRK13342 137 PALLSRAQVFELKPLsEEDIEQllKRALEDKERGLVELDDEALDALARLANGDARRALNLLE-LAALGVDSITLELLEEA 215
|
..
gi 67478786 226 AG 227
Cdd:PRK13342 216 LQ 217
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
1-271 |
2.97e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 85.28 E-value: 2.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 1 MSgqnAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSGL--PNLLFFGPPGSGKTTS--ILAVAHE---------------- 60
Cdd:PRK14963 1 MS---ALYQRARPITFDEVVGQEHVKEVLLAALRQGRlgHAYLFSGPRGVGKTTTarLIAMAVNcsgedpkpcgecescl 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 61 LFQGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVThydgtPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLI 140
Cdd:PRK14963 78 AVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLR-----GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 141 CNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLsQGINHSVTPQ 220
Cdd:PRK14963 153 TTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERL-LALGTPVTRK 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 67478786 221 DISNVAGVVPSKEITEIIHLCQNGSVNDLYLKAMSLvVEQNFSADSILSQL 271
Cdd:PRK14963 232 QVEEALGLPPQERLRGIAAALAQGDAAEALSGAAQL-YRDGFAARTLVEGL 281
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
8-271 |
5.65e-18 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 84.76 E-value: 5.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 8 SEKYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTT--SILAVA------------------HELFQGY 65
Cdd:PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDEGRLHhaYLLTGTRGVGKTTiaRILAKSlncenaqhgepcgvcqscTQIDAGR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 66 FKErVLELNASNQRGIEMVRTTLKNyamqdvTHYDGTP-DYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYI 144
Cdd:PRK08691 87 YVD-LLEIDAASNTGIDNIREVLEN------AQYAPTAgKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 145 SRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLL-QKLSQGINhSVTPQDIS 223
Cdd:PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLdQAIALGSG-KVAENDVR 238
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 67478786 224 NVAGVVPSKEITEIIHLCQNGSVNDLYLKAMSLvVEQNFSADSILSQL 271
Cdd:PRK08691 239 QMIGAVDKQYLYELLTGIINQDGAALLAKAQEM-AACAVGFDNALGEL 285
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
7-258 |
1.86e-17 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 82.98 E-value: 1.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 7 WSEKYRPKTLDDVQGQEEVIKLLKSS-LNSGLPN-LLFFGPPGSGKTTSILAVAHEL----------------------- 61
Cdd:PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTiLNDRLAGgYLLTGIRGVGKTTSARIIAKAVncsalitenttiktceqctncis 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 62 FQGYFKERVLELNASNQRGIEMVRTTLknyamQDVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLIC 141
Cdd:PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRII-----ESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 142 NYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQK---LSQGINHSVT 218
Cdd:PRK06645 166 TEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQaasMSAKSDNIIS 245
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 67478786 219 PQDISNVAGVVPSKEITE----IIHLCQNGS---VNDLYLKAMSLVV 258
Cdd:PRK06645 246 PQVINQMLGLVDSSVIIEfveyIIHRETEKAinlINKLYGSSVNLEI 292
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
10-278 |
3.77e-17 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 81.84 E-value: 3.77e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSGlpNL----LFFGPPGSGKTTS--ILAVA----H----------ELFQGYFKER 69
Cdd:PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQG--KIshayLFSGPRGTGKTSAakIFAKAvnclNppdgepcnecEICKAITNGS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 70 ---VLELN-ASNqRGIEMVRTTLKN--YAMQDVThydgtpdYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNY 143
Cdd:PRK05563 87 lmdVIEIDaASN-NGVDEIRDIRDKvkYAPSEAK-------YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 144 ISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLL-QKLSQGINHsVTPQDI 222
Cdd:PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILdQAISFGDGK-VTYEDA 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 67478786 223 SNVAGVVPSKEITEIIHLCQNGSVNdlylKAMSLVveqnfsaDSILSQLRDVY--IED 278
Cdd:PRK05563 238 LEVTGSVSQEALDDLVDAIVEGDVA----KALKIL-------EELLDEGKDPNrfIED 284
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
10-238 |
1.45e-16 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 80.08 E-value: 1.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSG-LPN-LLFFGPPGSGKTTS--ILAVAHELFQGYfKER---------------- 69
Cdd:PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNNrLAHaYLFSGLRGSGKTSSarIFARALVCEQGP-SSTpcdtciqcqsalenrh 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 70 --VLELNASNQRGIEMVRTTLKNyamqdvTHYdgTPD---YKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYI 144
Cdd:PRK08451 86 idIIEMDAASNRGIDDIRELIEQ------TKY--KPSmarFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 145 SRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQklsQGINHS---VTPQD 221
Cdd:PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLD---QAIIYCknaITESK 234
|
250
....*....|....*..
gi 67478786 222 ISNVAGVVPSKEITEII 238
Cdd:PRK08451 235 VADMLGLLDPSKLEDFF 251
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
1-280 |
2.27e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 79.74 E-value: 2.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 1 MSGQnAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTT--SILAVAHELFQGYFKE-------- 68
Cdd:PRK14957 1 MSYQ-ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHhaYLFTGTRGVGKTTlgRLLAKCLNCKTGVTAEpcnkcenc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 69 ---------RVLELNASNQRGIEMVRTTLKNyamqdVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCL 139
Cdd:PRK14957 80 vainnnsfiDLIEIDAASRTGVEETKEILDN-----IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 140 ICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTP 219
Cdd:PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQ 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 67478786 220 QDISNVAGVVPSKEITEIIHLCQNGSVNDLYLKAMSLVVEQNfSADSILSQLRDVYIEDCV 280
Cdd:PRK14957 235 AQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTES-SADAVLDRIAEIWFACCI 294
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
10-238 |
2.35e-16 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 79.62 E-value: 2.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSG--LPNLLFFGPPGSGKTTS--ILAvahelfqgyfkeRVLELNASNQRGI---- 81
Cdd:PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISNriAPAYLFTGPRGTGKTSSarILA------------KSLNCLNSDKPTPepcg 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 82 --EMVRTTLKNYAMqDVTHYDGTPD---------------------YKLIILDESDALTPDAQTALRRMMEDFTKNTRFC 138
Cdd:PRK14948 77 kcELCRAIAAGNAL-DVIEIDAASNtgvdnirelieraqfapvqarWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 139 LICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLS--QGinhS 216
Cdd:PRK14948 156 LATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSllPG---P 232
|
250 260
....*....|....*....|..
gi 67478786 217 VTPQDISNVAGVVPSKEITEII 238
Cdd:PRK14948 233 ITPEAVWDLLGAVPEQDLLNLL 254
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
1-200 |
4.15e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 78.83 E-value: 4.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 1 MSG-QNAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTT--SILA------------------V 57
Cdd:PRK14956 1 MSGtHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGhaYIFFGPRGVGKTTiaRILAkrlncenpignepcnectS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 58 AHELFQGYFKErVLELNASNQRGIEMVRTTLKNyamqdVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRF 137
Cdd:PRK14956 81 CLEITKGISSD-VLEIDAASNRGIENIRELRDN-----VKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 67478786 138 CLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLR 200
Cdd:PRK14956 155 ILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVR 217
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
10-291 |
5.82e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 78.29 E-value: 5.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSS--LNSGLPNLLFFGPPGSGKTTSILAVAHEL-------------------FQGYFKE 68
Cdd:PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAftLNKIPQSILLVGASGVGKTTCARIISLCLncsngptsdpcgtchncisIKNSNHP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 69 RVLELNASNQRGIEMVRTTLKNyamqdvTHY-DGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRI 147
Cdd:PRK14964 86 DVIEIDAASNTSVDDIKVILEN------SCYlPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 148 LPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAG 227
Cdd:PRK14964 160 PVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 67478786 228 VVPSKEITEIIHLCQNGSVndlyLKAMSLVveqnfsaDSILSQLRDVYIEDCVNLTNQERCLFL 291
Cdd:PRK14964 240 CVDKHILEDLVEAILLGDA----QSALNVF-------RELCNTSNPVIILEGMLQIIYEICYFS 292
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
8-200 |
1.62e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 76.47 E-value: 1.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 8 SEKYRPKTLDDVQGQEEVIKLLKSSLNSGL--PNLLFFGPPGSGKTTSILAVAHELF-------QGYFKE---------- 68
Cdd:PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRMGRvgHGYIFSGLRGVGKTTAARVFAKAVNcqrmiddADYLQEvtepcgeces 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 69 ----------RVLELNASNQRGIEMVRTTLKN--YAMQDVThydgtpdYKLIILDESDALTPDAQTALRRMMEDFTKNTR 136
Cdd:PRK14955 87 crdfdagtslNISEFDAASNNSVDDIRLLRENvrYGPQKGR-------YRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 67478786 137 FCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLR 200
Cdd:PRK14955 160 FIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMR 223
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
10-212 |
3.68e-15 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 76.07 E-value: 3.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTTS--ILAVAHELFQGYFKE----------------- 68
Cdd:PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAGRINhaYLFSGPRGCGKTSSarILARSLNCAQGPTATpcgvcescvalapngpg 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 69 --RVLELNASNQRGIEMVRttlknyAMQDVTHY-DGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYIS 145
Cdd:PRK14952 86 siDVVELDAASHGGVDDTR------ELRDRAFYaPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67478786 146 RILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQG 212
Cdd:PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAG 226
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
8-276 |
4.76e-15 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 75.85 E-value: 4.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 8 SEKYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTT--------------------SILAVAHELFQGY 65
Cdd:PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERGRLHhaYLFTGTRGVGKTTiarilakclncetgvtstpcEVCATCKAVNEGR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 66 FKErVLELNASNQRGIEMVRTTLKNyamqdVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYIS 145
Cdd:PRK14960 86 FID-LIEIDAASRTKVEDTRELLDN-----VPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 146 RILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLL-QKLSQGiNHSVTPQDISN 224
Cdd:PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTdQAIAYG-QGAVHHQDVKE 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 67478786 225 VAGVVPSKEITEII---HLCQNGSVNDLYLKAMSLVVEQNFSADSILSQLRDVYI 276
Cdd:PRK14960 239 MLGLIDRTIIYDLIlavHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELAL 293
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
10-200 |
6.24e-14 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 72.50 E-value: 6.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSG-LPN-LLFFGPPGSGKTT--SILA---------------------VAhelFQG 64
Cdd:PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATNkLAHaYLFCGPRGVGKTTcaRIFAktincqnltadgeacnecescVA---FNE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 65 YFKERVLELNASNQRGIEMVRTTLK--NYAMQdvthydgTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICN 142
Cdd:PRK14971 87 QRSYNIHELDAASNNSVDDIRNLIEqvRIPPQ-------IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATT 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 67478786 143 YISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLR 200
Cdd:PRK14971 160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMR 217
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
8-212 |
1.13e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 71.63 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 8 SEKYRPKTLDDVQGQEEVIKLLKSSL--NSGLPNLLFFGPPGSGKTT--SILAVA------------------HELFQGY 65
Cdd:PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAqeNRVAPAYLFSGTRGVGKTTiaRIFAKAlncetaptgepcntceqcRKVTQGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 66 FKErVLELNASNQRGIEMVRTtlknyaMQDVTHY---DGTpdYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICN 142
Cdd:PRK14959 87 HVD-VVEIDGASNRGIDDAKR------LKEAIGYapmEGR--YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 67478786 143 YISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLL-QKLSQG 212
Cdd:PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLgQVLALG 228
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
1-200 |
1.67e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 71.13 E-value: 1.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 1 MSGQnAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSGL--PNLLFFGPPGSGKTTSILAVAHELF-------QGYFKE--- 68
Cdd:PRK14954 1 MSYQ-VIARKYRPSKFADITAQEHITHTIQNSLRMDRvgHGYIFSGLRGVGKTTAARVFAKAVNcqrmiddPVYLQEvte 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 69 -----------------RVLELNASNQRGIEMVRTTLKNyamqdVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDF 131
Cdd:PRK14954 80 pcgecescrdfdagtslNISEFDAASNNSVDDIRQLREN-----VRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 67478786 132 TKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLR 200
Cdd:PRK14954 155 PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMR 223
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
1-271 |
1.98e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 70.93 E-value: 1.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 1 MSGQnAWSEKYRPKTLDDVQGQEEVIKLLKSSL--NSGLPNLLFFGPPGSGKTT--SILAVA------------------ 58
Cdd:PRK14969 1 MSYQ-VLARKWRPKSFSELVGQEHVVRALTNALeqQRLHHAYLFTGTRGVGKTTlaRILAKSlncetgvtatpcgvcsac 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 59 HELFQGYFKErVLELNASNQRGIEMVRTTLKN--YAmqdvthyDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTR 136
Cdd:PRK14969 80 LEIDSGRFVD-LIEVDAASNTQVDAMRELLDNaqYA-------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 137 FCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLL-QKLSQGiNH 215
Cdd:PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLdQAIAYG-GG 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 67478786 216 SVTPQDISNVAGVVPSKEITEIIH--LCQNGSVNDLYLKAMSlvvEQNFSADSILSQL 271
Cdd:PRK14969 231 TVNESEVRAMLGAIDQDYLFALLEalLAQDGAALLAIADAME---ERSLSFDAALQDL 285
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
8-234 |
2.59e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 69.84 E-value: 2.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 8 SEKYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTT--SILA------------------VAHELFQGY 65
Cdd:PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHhaWLLSGTRGVGKTTiaRLLAkslncqngitsnpcrkciICKEIEKGL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 66 FKErVLELNASNQRGIEMVRTTLKNyamqdVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYIS 145
Cdd:PRK14961 87 CLD-LIEIDAASRTKVEEMREILDN-----IYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 146 RILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLL-QKLSQGINHsVTPQDISN 224
Cdd:PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLeHAINLGKGN-INIKNVTD 239
|
250
....*....|
gi 67478786 225 VAGVVPSKEI 234
Cdd:PRK14961 240 MLGLLNEKQS 249
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
12-206 |
8.82e-13 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 68.54 E-value: 8.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 12 RPKTLDDVQGQEEVI---KLLKSSLNSG-LPNLLFFGPPGSGKTTsiLAvahELFQGYFKERVLELNASNQrGIEMVRTT 87
Cdd:COG2256 20 RPRTLDEVVGQEHLLgpgKPLRRAIEAGrLSSMILWGPPGTGKTT--LA---RLIANATDAEFVALSAVTS-GVKDIREV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 88 LKNyAMQDVTHYDGTpdykLIILDE--------SDALTPDaqtalrrmMED----F----TKNTRFCLIcnyisrilPPI 151
Cdd:COG2256 94 IEE-ARERRAYGRRT----ILFVDEihrfnkaqQDALLPH--------VEDgtitLigatTENPSFEVN--------SAL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 67478786 152 SSRCIKFRFSALPKEIVSNRLQMICEKEG-------FSVTNEAIQAVSILSEGDLRYGIGLL 206
Cdd:COG2256 153 LSRCRVFVLKPLSEEDLEQLLERALADDErglggykLELDDEALEALARLADGDARRALNAL 214
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
40-161 |
7.33e-12 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 61.84 E-value: 7.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 40 LLFFGPPGSGKTTSILAVAHELfqgyfKERVLELNASNQRGI------EMVRTTLKNyAMQDVTHydgtpdykLIILDES 113
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL-----GAPFIEISGSELVSKyvgeseKRLRELFEA-AKKLAPC--------VIFIDEI 66
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 67478786 114 DALTP-----------DAQTALRRMMEDFTKNTR---FCLICNYISRILPPISSRC-IKFRFS 161
Cdd:pfam00004 67 DALAGsrgsggdsesrRVVNQLLTELDGFTSSNSkviVIAATNRPDKLDPALLGRFdRIIEFP 129
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
163-226 |
1.75e-11 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 58.69 E-value: 1.75e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 67478786 163 LPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGiNHSVTPQDISNVA 226
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAAG-GGVITEEDVYEVA 63
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
7-50 |
1.99e-11 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 64.86 E-value: 1.99e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 67478786 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGK 50
Cdd:PRK04132 9 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGsMPHLLFAGPPGVGK 53
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
10-200 |
2.48e-11 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 64.41 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSG--LPNLLFFGPPGSGKTTS--ILAVAHELFQGyfkERVLELN-ASNQRGIEmv 84
Cdd:PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNkiANAYIFSGPRGVGKTSSarAFARCLNCVNG---PTPMPCGeCSSCKSID-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 85 rttlkNYAMQDVTHYDGTPD---------------------YKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNY 143
Cdd:PRK06647 84 -----NDNSLDVIEIDGASNtsvqdvrqikeeimfppassrYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 67478786 144 ISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLR 200
Cdd:PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVR 215
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
21-164 |
2.67e-11 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 61.07 E-value: 2.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 21 GQEEVIKLLKSSLNSG-LPN-LLFFGPPGSGKTTSILAVAHELFQGYFKE-----------RVLELNASNQRGIEMVRTT 87
Cdd:pfam13177 1 GQPEAIQLLQNSLENGrLSHaYLFSGPEGVGKLELALAFAKALFCEEPGDdlpcgqcrscrRIESGNHPDLVIIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 88 LKNYAMQDVTH------YDGTpdYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFS 161
Cdd:pfam13177 81 IKIDQIRELQKefskspYEGK--KKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFK 158
|
...
gi 67478786 162 ALP 164
Cdd:pfam13177 159 PLS 161
|
|
| Rep_fac_C |
pfam08542 |
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication ... |
229-317 |
2.85e-11 |
|
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A.
Pssm-ID: 462513 [Multi-domain] Cd Length: 87 Bit Score: 59.03 E-value: 2.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 229 VPSKEITEIIHLCQNGSVNDLYLKAMSLVVEQNFSADSILSQLRDVYIEDcvNLTNQERCLFLQLIAQSDATLIDKTDPL 308
Cdd:pfam08542 1 PHPEDIEEILNSCLNGDFDEAYKKVRELLVEKGYSLQDIITQLHRVVKSL--DLPEEVKLELLEKLGEIEYRLSEGASEK 78
|
....*....
gi 67478786 309 FTICALLCS 317
Cdd:pfam08542 79 LQLSALLAA 87
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
8-271 |
4.33e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 63.60 E-value: 4.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 8 SEKYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTT--SILAVA------------------HELFQGY 65
Cdd:PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQYLHhaYLFTGTRGVGKTTisRILAKClncekgvsanpcndcencREIDEGR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 66 FKErVLELNASNQRGIEMVRTTLKNyamqdVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYIS 145
Cdd:PRK14958 87 FPD-LFEVDAASRTKVEDTRELLDN-----IPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 146 RILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLL-QKLSQGiNHSVTPQDISN 224
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLdQSIAYG-NGKVLIADVKT 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 67478786 225 VAGVVPSKEITEIIHLCQnGSVNDLYLKAMSLVVEQNFSADSILSQL 271
Cdd:PRK14958 240 MLGTIEPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFSNALADL 285
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1-229 |
6.54e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 60.27 E-value: 6.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 1 MSGQnAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTT--SILAVA------------------ 58
Cdd:PRK12323 1 MSYQ-VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHhaYLFTGTRGVGKTTlsRILAKSlnctgadgeggitaqpcg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 59 -----HELFQGYFKErVLELNASNQRGIEMVRTTLKN--YAmqdvthyDGTPDYKLIILDESDALTPDAQTALRRMMEDF 131
Cdd:PRK12323 80 qcracTEIDAGRFVD-YIEMDAASNRGVDEMAQLLDKavYA-------PTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 132 TKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIgllqklsq 211
Cdd:PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDAL-------- 223
|
250
....*....|....*...
gi 67478786 212 ginhSVTPQDISNVAGVV 229
Cdd:PRK12323 224 ----SLTDQAIAYSAGNV 237
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
12-61 |
1.40e-09 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 58.22 E-value: 1.40e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 67478786 12 RPKTLDDVQGQEEVIKLLK----SSLNSG--LPNLLFFGPPGSGKTTsiLA--VAHEL 61
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKifieAAKKRGeaLDHVLLYGPPGLGKTT--LAniIANEM 75
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
8-208 |
2.34e-09 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 57.94 E-value: 2.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 8 SEKYRPKTLDdvqGQEEVIKLLKSSLNSGL-----PNLLFFGPPGSGKTTSILAVAHELfQGYFKERVLEL-----NASN 77
Cdd:COG1474 20 SPDYVPDRLP---HREEEIEELASALRPALrgerpSNVLIYGPTGTGKTAVAKYVLEEL-EEEAEERGVDVrvvyvNCRQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 78 QR---------------GIEMVRTtlkNYAMQDV-----THYDGTPDYKLIILDESDALTPDAQT----ALRRMMEDFtK 133
Cdd:COG1474 96 AStryrvlsrileelgsGEDIPST---GLSTDELfdrlyEALDERDGVLVVVLDEIDYLVDDEGDdllyQLLRANEEL-E 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 134 NTRFCL--ICNYI-------SRILPPISSRCIKF-RFSA--LpKEIVSNRlqmicEKEGF---SVTNEAIQAVSILS--- 195
Cdd:COG1474 172 GARVGVigISNDLeflenldPRVKSSLGEEEIVFpPYDAdeL-RDILEDR-----AELAFydgVLSDEVIPLIAALAaqe 245
|
250
....*....|...
gi 67478786 196 EGDLRYGIGLLQK 208
Cdd:COG1474 246 HGDARKAIDLLRV 258
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
39-160 |
3.73e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.69 E-value: 3.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 39 NLLFFGPPGSGKTTSILAVAHELFQGYFKerVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGT-----------PDYKL 107
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGG--VIYIDGEDILEEVLDQLLLIIVGGKKASGSGELrlrlalalarkLKPDV 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 67478786 108 IILDESDALTPDAQTALRRMMEDFT--------KNTRFCLICNYISRILPPISSRCIKFRF 160
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLLEELRlllllkseKNLTVILTTNDEKDLGPALLRRRFDRRI 142
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
10-240 |
6.99e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 57.17 E-value: 6.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTT--SILAVA------------------HELFQGYFK 67
Cdd:PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHhaYLFTGTRGVGKTTlsRIFAKAlncetgvtsqpcgvcracREIDEGRFV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 68 ERVlELNASNQRGIEMVRTTLKN--YAMQDVThydgtpdYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYIS 145
Cdd:PRK07003 89 DYV-EMDAASNRGVDEMAALLERavYAPVDAR-------FKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 146 RILPPISSRCIKFRFSALPK-EIVSNrLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLlqkLSQGINHSVTPQDISN 224
Cdd:PRK07003 161 KIPVTVLSRCLQFNLKQMPAgHIVSH-LERILGEERIAFEPQALRLLARAAQGSMRDALSL---TDQAIAYSANEVTETA 236
|
250
....*....|....*.
gi 67478786 225 VAGVVPSKEITEIIHL 240
Cdd:PRK07003 237 VSGMLGALDQTYMVRL 252
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
12-61 |
9.70e-09 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 55.86 E-value: 9.70e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 67478786 12 RPKTLDDVQGQEEVIKLLKSSL------NSGLPNLLFFGPPGSGKTTsiLA--VAHEL 61
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIeaakkrGEALDHVLLYGPPGLGKTT--LAhiIANEM 78
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
9-75 |
1.40e-08 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 56.22 E-value: 1.40e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 67478786 9 EKYRPKTLDDVQGQEEVI---KLLKSSLNSG-LPNLLFFGPPGSGKTT--SILAvahelfqGYFKERVLELNA 75
Cdd:PRK13341 20 DRLRPRTLEEFVGQDHILgegRLLRRAIKADrVGSLILYGPPGVGKTTlaRIIA-------NHTRAHFSSLNA 85
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
12-61 |
3.18e-08 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 52.12 E-value: 3.18e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 67478786 12 RPKTLDDVQGQEEVIKLLKSSL------NSGLPNLLFFGPPGSGKTTSILAVAHEL 61
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIeaakqrGEALDHVLLYGPPGLGKTTLANIIANEM 57
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
16-173 |
4.53e-08 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 52.96 E-value: 4.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 16 LDDVQGQEEV---IKLLKSSLNS-------GLP---NLLFFGPPGSGKTTSILAVAHELfqgyfKERVLELNASNQRGiE 82
Cdd:COG1223 1 LDDVVGQEEAkkkLKLIIKELRRrenlrkfGLWpprKILFYGPPGTGKTMLAEALAGEL-----KLPLLTVRLDSLIG-S 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 83 MVRTTLKNyaMQDVthYDGTPDYKLII-LDESDALtpdaqtALRR------------------MMEDFtkNTRFCLIC-- 141
Cdd:COG1223 75 YLGETARN--LRKL--FDFARRAPCVIfFDEFDAI------AKDRgdqndvgevkrvvnallqELDGL--PSGSVVIAat 142
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 67478786 142 NYISRILPPISSRC---IKFRfsaLP-----KEIVSNRLQ 173
Cdd:COG1223 143 NHPELLDSALWRRFdevIEFP---LPdkeerKEILELNLK 179
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
109-197 |
1.38e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 52.34 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 109 ILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLqmicEKEGFSVTNEAI 188
Cdd:PRK07471 146 IVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDAL----AAAGPDLPDDPR 221
|
....*....
gi 67478786 189 QAVSILSEG 197
Cdd:PRK07471 222 AALAALAEG 230
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
10-56 |
2.40e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 52.30 E-value: 2.40e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSGLPN--LLFFGPPGSGKTTS--ILA 56
Cdd:PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDSGRINhaYLFSGPRGCGKTSSarILA 58
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
21-207 |
5.94e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 50.42 E-value: 5.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 21 GQEEVIKLLKSSLNSG-LPN-LLFFGPPGSGKTTSILAVAHELF--------------------------QG------YF 66
Cdd:PRK09112 27 GHEEAEAFLAQAYREGkLHHaLLFEGPEGIGKATLAFHLANHILshpdpaeapetladpdpaspvwrqiaQGahpnllHI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 67 KERVLELNASNQRGI--EMVRttlknyamqDVTHY----DGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLI 140
Cdd:PRK09112 107 TRPFDEKTGKFKTAItvDEIR---------RVGHFlsqtSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 67478786 141 CNYISRILPPISSRCIKFRFSALPKEIVSNRLQMIcekeGFSV--TNEAIQAVSILSEGDLRYGIGLLQ 207
Cdd:PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL----GSSQgsDGEITEALLQRSKGSVRKALLLLN 242
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
40-148 |
2.54e-06 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 46.18 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 40 LLFFGPPGSGKTTSILAVAHELFQGYFkeRVLELNASNQRGIEMVRTTLKN----------------YAMQDvtHYDGTP 103
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEQLPEVRD--SVVFVDLPSGTSPKDLLRALLRalglplsgrlskeellAALQQ--LLLALA 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 67478786 104 DYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLI-CNYISRIL 148
Cdd:pfam13401 84 VAVVLIIDEAQHLSLEALEELRDLLNLSSKLLQLILVgTPELRELL 129
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
14-61 |
7.58e-06 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 46.91 E-value: 7.58e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 67478786 14 KTLDDVQGQEEVIKLLKSSL------NSGLPNLLFFGPPGSGKTTSILAVAHEL 61
Cdd:TIGR00635 1 KLLAEFIGQEKVKEQLQLFIeaakmrQEALDHLLLYGPPGLGKTTLAHIIANEM 54
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
10-197 |
8.59e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 47.40 E-value: 8.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSGlpNL----LFFGPPGSGKTT--SILA-----------------------VAHE 60
Cdd:PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ--RLhhayLFTGTRGVGKTTvsRILAkslncqgpdgqggitatpcgvcqACRD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 61 LFQGYFKERVlELNASNQRGIEMVRTTLKNYAMQDVthydgTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLI 140
Cdd:PRK14951 87 IDSGRFVDYT-ELDAASNRGVDEVQQLLEQAVYKPV-----QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 67478786 141 CNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGfsVTNEAiQAVSILSEG 197
Cdd:PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN--VPAEP-QALRLLARA 214
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
163-211 |
1.88e-05 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 42.07 E-value: 1.88e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 67478786 163 LPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQ 211
Cdd:cd18133 1 LDQEQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAA 49
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
9-61 |
2.12e-05 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 45.67 E-value: 2.12e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67478786 9 EKYRPKTLDDVQGQEEVIKLLKSSLN-----------SGLP---NLLFFGPPGSGKTTSILAVAHEL 61
Cdd:COG0464 149 LELREAILDDLGGLEEVKEELRELVAlplkrpelreeYGLPpprGLLLYGPPGTGKTLLARALAGEL 215
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
163-227 |
2.83e-05 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 41.34 E-value: 2.83e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67478786 163 LPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLL-QKLSQGINHsVTPQDISNVAG 227
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLdQAIAFGGGR-VTLDDVREMLG 65
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
6-61 |
4.23e-05 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 44.61 E-value: 4.23e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 6 AWSEKYRPKTLDDVQGQEEVIKLLKSSL-----NSGL--------PN-LLFFGPPGSGKTTSILAVAHEL 61
Cdd:COG1222 67 AVPAESPDVTFDDIGGLDEQIEEIREAVelplkNPELfrkygiepPKgVLLYGPPGTGKTLLAKAVAGEL 136
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
105-158 |
4.83e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 44.41 E-value: 4.83e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 67478786 105 YKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKF 158
Cdd:PRK06090 109 YRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
18-166 |
6.33e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 44.25 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 18 DVQGQEEVIKLLKSSLNSG-LPNL-LFFGPPGSGKttSILAvahelfqgyfKERVLE-LNASNQR--------------- 79
Cdd:PRK05564 5 TIIGHENIKNRIKNSIIKNrFSHAhIIVGEDGIGK--SLLA----------KEIALKiLGKSQQReyvdiiefkpinkks 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 80 -GIEMVRTTLKNYAMQDvthYDGtpDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKF 158
Cdd:PRK05564 73 iGVDDIRNIIEEVNKKP---YEG--DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147
|
....*...
gi 67478786 159 RFSALPKE 166
Cdd:PRK05564 148 KLNRLSKE 155
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
10-216 |
7.56e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 44.12 E-value: 7.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSG-LPN-LLFFGPPGSGKTTS--ILAVA---------------------HelFQG 64
Cdd:PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETGrIAQaFMLTGVRGVGKTTTarILARAlnyegpdgdggptidlcgvgeH--CQA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 65 YFKER---VLELNASNQRGIEMVRTTLknyamqDVTHYdgTP---DYKLIILDESDALTPDAQTALRRMMEDFTKNTRFC 138
Cdd:PRK09111 95 IMEGRhvdVLEMDAASHTGVDDIREII------ESVRY--RPvsaRYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 139 LICNYISRIlpPIS--SRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLlqkLSQGINHS 216
Cdd:PRK09111 167 FATTEIRKV--PVTvlSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSL---LDQAIAHG 241
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
16-52 |
1.13e-04 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 42.52 E-value: 1.13e-04
10 20 30
....*....|....*....|....*....|....*..
gi 67478786 16 LDDVQGQEEVIKLLKSSLnSGLPNLLFFGPPGSGKTT 52
Cdd:pfam01078 2 LADVKGQEQAKRALEIAA-AGGHNLLMIGPPGSGKTM 37
|
|
| rad24 |
TIGR00602 |
checkpoint protein rad24; All proteins in this family for which functions are known are ... |
2-61 |
1.26e-04 |
|
checkpoint protein rad24; All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129690 [Multi-domain] Cd Length: 637 Bit Score: 43.79 E-value: 1.26e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67478786 2 SGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPN-----LLFFGPPGSGKTTSILAVAHEL 61
Cdd:TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQvLENapkriLLITGPSGCGKSTTIKILSKEL 134
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
14-69 |
1.55e-04 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 43.04 E-value: 1.55e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 67478786 14 KTLDDVQGQEEVIKLLKSSLNSGLP-NLLFFGPPGSGKTTSILAVAHelfqgYFKER 69
Cdd:PRK14974 116 EALLEVLSVGDLFDLIEEIKSKGKPvVIVFVGVNGTGKTTTIAKLAY-----YLKKN 167
|
|
| Rad17 |
pfam03215 |
Rad17 P-loop domain; |
2-61 |
2.19e-04 |
|
Rad17 P-loop domain;
Pssm-ID: 367398 [Multi-domain] Cd Length: 186 Bit Score: 41.48 E-value: 2.19e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 67478786 2 SGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLNS-GLPN-----LLFFGPPGSGKTTSILAVAHEL 61
Cdd:pfam03215 4 DGGEQWYEKYKPNCLEQLAVHKRKIKDVQEWLDAmFLENakhriLLISGPSGCGKSTVIKELSKEL 69
|
|
| DEXXQc_Upf1-like |
cd17934 |
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ... |
40-71 |
2.63e-04 |
|
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438708 [Multi-domain] Cd Length: 121 Bit Score: 39.91 E-value: 2.63e-04
10 20 30
....*....|....*....|....*....|..
gi 67478786 40 LLFFGPPGSGKTTSILAVAHELFQGYFKERVL 71
Cdd:cd17934 2 SLIQGPPGTGKTTTIAAIVLQLLKGLRGKRVL 33
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
11-282 |
6.58e-04 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 40.99 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 11 YRPKTLDDvqgQEEVIKLLKSSLNSGL-----PNLLFFGPPGSGKTTSIL---------------------------AVA 58
Cdd:PRK00411 27 YVPENLPH---REEQIEELAFALRPALrgsrpLNVLIYGPPGTGKTTTVKkvfeeleeiavkvvyvyincqidrtryAIF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 59 HELFQGYFKERVLELNASNQRGIEMVRTTLknyamqdvthyDGTPDYKLIILDESDALT----PDAQTALRRMMEDFtKN 134
Cdd:PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYL-----------DERDRVLIVALDDINYLFekegNDVLYSLLRAHEEY-PG 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 135 TRFCLICnyISR---ILPPISSRcIKFRFsaLPKEIV-----SNRLQMICE---KEGF---SVTNEAIQAVSIL---SEG 197
Cdd:PRK00411 172 ARIGVIG--ISSdltFLYILDPR-VKSVF--RPEEIYfppytADEIFDILKdrvEEGFypgVVDDEVLDLIADLtarEHG 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 198 DLRYGIGLLqKLSqGIN------HSVTPQDISNvagvvpSKEITEIIHLCQngSVNDLYL--KAM--SLVVEQNFSADSI 267
Cdd:PRK00411 247 DARVAIDLL-RRA-GLIaeregsRKVTEEDVRK------AYEKSEIVHLSE--VLRTLPLheKLLlrAIVRLLKKGGDEV 316
|
330
....*....|....*.
gi 67478786 268 LS-QLRDVYIEDCVNL 282
Cdd:PRK00411 317 TTgEVYEEYKELCEEL 332
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
41-200 |
7.60e-04 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 40.32 E-value: 7.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 41 LFFGPPGSGKTTSILAVAHELFQGY-------------FKERVLELNASNQRG--IEMVRTTLKNYAmqdvthydGTPDy 105
Cdd:COG2842 54 VVYGESGVGKTTAAREYANRNPNVIyvtaspswtskelLEELAEELGIPAPPGtiADLRDRILERLA--------GTGR- 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 106 kLIILDESDALTPDAQTALRRM------------MEDFTKN-TRFCLIcnyISRILppissrcIKFRFSALPKEIVSNRL 172
Cdd:COG2842 125 -LLIIDEADHLKPKALEELRDIhdetgvgvvligMERLPAKlKRYEQL---YSRIG-------FWVEFKPLSLEDVRALA 193
|
170 180
....*....|....*....|....*...
gi 67478786 173 QMICEKEgfsvTNEAIQAVSILSEGDLR 200
Cdd:COG2842 194 EAWGELT----DPDLLELLHRITRGNLR 217
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
30-61 |
9.50e-04 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 39.19 E-value: 9.50e-04
10 20 30
....*....|....*....|....*....|...
gi 67478786 30 KSSLNSGLP-NLLFFGPPGSGKTTSILAVAHEL 61
Cdd:cd19481 18 LRRYGLGLPkGILLYGPPGTGKTLLAKALAGEL 50
|
|
| SSL2 |
COG1061 |
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair]; |
22-112 |
1.02e-03 |
|
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];
Pssm-ID: 440681 [Multi-domain] Cd Length: 566 Bit Score: 40.78 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 22 QEEVIKLLKSSLNSGLPNLLFFGPPGSGKTTSILAVAHELFQGyfkERVL------ELNASNQRGIEMVRTTLKNYAMQD 95
Cdd:COG1061 85 QQEALEALLAALERGGGRGLVVAPTGTGKTVLALALAAELLRG---KRVLvlvprrELLEQWAEELRRFLGDPLAGGGKK 161
|
90 100 110
....*....|....*....|....*....|....
gi 67478786 96 VTHYDGT-----------------PDYKLIILDE 112
Cdd:COG1061 162 DSDAPITvatyqslarrahldelgDRFGLVIIDE 195
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
22-139 |
1.27e-03 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 39.40 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 22 QEEVIKLLKSslnsGLPNLLFFGPPGSGKTTSILAVAHELFQGYFKERVL------------------ELNASNQRGIEM 83
Cdd:smart00487 13 QKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGKGGRVLvlvptrelaeqwaeelkkLGPSLGLKVVGL 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 67478786 84 VRTTLKNYAMQDVTHYD-----GTP---------------DYKLIILDESDALTPDAQT-ALRRMMEDFTKNTRFCL 139
Cdd:smart00487 89 YGGDSKREQLRKLESGKtdilvTTPgrlldllendklslsNVDLVILDEAHRLLDGGFGdQLEKLLKLLPKNVQLLL 165
|
|
| ResIII |
pfam04851 |
Type III restriction enzyme, res subunit; |
22-71 |
2.92e-03 |
|
Type III restriction enzyme, res subunit;
Pssm-ID: 398492 [Multi-domain] Cd Length: 162 Bit Score: 37.65 E-value: 2.92e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 67478786 22 QEEVIKLLKSSLNSGLPNLLFFGPPGSGKTTSILAVAHELFQGYFKERVL 71
Cdd:pfam04851 8 QIEAIENLLESIKNGQKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVL 57
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
106-198 |
3.28e-03 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 38.75 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 106 KLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQmiceKEGFS--- 182
Cdd:PRK08058 112 KVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ----EEGISesl 187
|
90 100
....*....|....*....|..
gi 67478786 183 ------VTNEAIQAVSiLSEGD 198
Cdd:PRK08058 188 atllagLTNSVEEALA-LSEDD 208
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
39-112 |
3.42e-03 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 38.22 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67478786 39 NLLFFGPPGSGKTTSILAVAHEL----FQGYF---KERVLELNASNQRGieMVRTTLKNYAmqdvthydgtpDYKLIILD 111
Cdd:NF038214 92 NVLLLGPPGTGKTHLAIALGYAAcrqgYRVRFttaADLVEQLAQARADG--RLGRLLRRLA-----------RYDLLIID 158
|
.
gi 67478786 112 E 112
Cdd:NF038214 159 E 159
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
10-56 |
3.72e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 39.08 E-value: 3.72e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 67478786 10 KYRPKTLDDVQGQEEVIKLLKSSLNSGlpNL----LFFGPPGSGKTT--SILA 56
Cdd:PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLG--RLhhayLFSGTRGVGKTTiaRLLA 59
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
23-71 |
3.86e-03 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 38.98 E-value: 3.86e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 67478786 23 EEVIKLLKSSlnsglPNLLFFGPPGSGKTTSILAVAHELfQGYFKERVL 71
Cdd:COG1401 212 EAFLAALKTK-----KNVILAGPPGTGKTYLARRLAEAL-GGEDNGRIE 254
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
19-61 |
4.51e-03 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 38.22 E-value: 4.51e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 67478786 19 VQGQEEVIKLLKSSLNSGLPnLLFFGPPGSGKTTSILAVAHEL 61
Cdd:COG0714 14 YVGQEELIELVLIALLAGGH-LLLEGVPGVGKTTLAKALARAL 55
|
|
| VI_IcmF |
TIGR03348 |
type VI secretion protein IcmF; Members of this protein family are IcmF homologs and tend to ... |
24-54 |
7.29e-03 |
|
type VI secretion protein IcmF; Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. [Cellular processes, Pathogenesis]
Pssm-ID: 274531 [Multi-domain] Cd Length: 1169 Bit Score: 38.09 E-value: 7.29e-03
10 20 30
....*....|....*....|....*....|....*..
gi 67478786 24 EVIKLLKSSLNSG------LPNLLFFGPPGSGKTTSI 54
Cdd:TIGR03348 92 EALALLKRSRLGGrrylydLPWYLVIGPPGSGKTTLL 128
|
|
| |
