|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-332 |
1.99e-86 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 262.90 E-value: 1.99e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 1 MQMLSMIVFLVMSLMASIAMLFMSSIFWVWVMTDVGTLFLIPFLSAETrpKKSWFTGVATYFVVQFFGSVMILGGIILDW 80
Cdd:MTH00144 1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKK--KSSESESVVKYFIIQSLGSSLLIFGSLIMY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 81 AIQATDCSSAMMCFGFALKLGMVPLHFWVSRSFVYFHYGGIFIVGAGQKVFVVACVPLFSDVPLCAYAYYLMAVGSMIYG 160
Cdd:MTH00144 79 NLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVLSALVG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 161 PIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSGDCKFMKNLGSELPGYYKTGFVC- 239
Cdd:MTH00144 159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIIs 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 240 IAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINLIVWVWVLFIATSSEVKEPGFLSgttgQNVLNMSCII 319
Cdd:MTH00144 239 LLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNS----SKVLNSSIIS 314
|
330
....*....|...
gi 229324837 320 WNLFMGAGFSMLY 332
Cdd:MTH00144 315 LNLLGGLLFLLLY 327
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
9-293 |
1.44e-09 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 58.62 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 9 FLVMSLMASIAMLFMSS-IFWVWVMTDVGTL---FLIPFLSAETRPKKSWftgvaTYFVVQFFGSVMILGGIIL------ 78
Cdd:COG0651 111 PLFLLLLAGMNGAFLTGdLFNLFVFFEVMLLasyGLVALGGTKEALRAGL-----KYLILNLVGSALFLLGVGLlygatg 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 79 -----DWAIQATDCSS-------AMMCFGFALKLGMVPLHFWVSRSfvyfhYG------GIFIVGAGQKVFVVACV---- 136
Cdd:COG0651 186 tlnmaDLAARLAELDPglllaafALLLVGFGIKAALFPLHFWLPDA-----YPaapspvSALLSGLLTKVGVYAILrvlt 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 137 PLFSDVPLCAYAYYLMAVG--SMIYGPIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFML 214
Cdd:COG0651 261 LLFGADPALFLGTLLLVLGllTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 215 WSGDCKFMKNLGS----ELPGYYKT------GFVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINLI 284
Cdd:COG0651 341 FLAAGAIERATGTrdldKLGGLGKRmpltaaAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420
|
....*....
gi 229324837 285 VWVWVLFIA 293
Cdd:COG0651 421 YFVRIFGRA 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
95-281 |
3.62e-08 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 54.57 E-value: 3.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 95 GFALKLGMVPLHFWV---------SRSFVYFHYGGIFIVGAGQKVFVVACvplFSDVPLCAYAYYLMAVGSMIYGPIAMF 165
Cdd:TIGR01770 212 GLLFKLSAVPFHMWVpdvyegaptPVTAFFSIVPKIAIFAVFLRLFLYIL---FGFSEAWQIFLAIIAFLSMLIGNFGAL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 166 NAIAVKSFLAYSSVTHTGFLVIG----SFFGLHIVYAYSFIYCVSM--AFLVFMLWSGDCKFMKNLGSELPGYYKTG--- 236
Cdd:TIGR01770 289 AQKKVKRLLAYSSISHVGYILIGllagTLEGIKAVLFYIFIYALMSlgAFGVLSLLRSYKDEWIEYISDFAGLFKTNpil 368
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 229324837 237 ---FVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLI 281
Cdd:TIGR01770 369 ailILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVI 416
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
91-279 |
1.23e-06 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 49.23 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 91 MMCFGFALKLGMVPLHFWVSRSFVYFHY-GGIFIVGAGQKV----FVVACVPLFSDVPLCAYAYYLMAVGSMIYGPIAMF 165
Cdd:pfam00361 87 LILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAggygLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAAL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 166 NAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIY------CVSMAFLVFMLWSGDCK------FMKNLGSELPGYY 233
Cdd:pfam00361 167 VQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHllthglFSAGLFLCAGSVIYRRVhtrnirDYGGLAKTMPILA 246
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 229324837 234 KTGFVCiAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSS 279
Cdd:pfam00361 247 LVFLVA-MLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-332 |
1.99e-86 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 262.90 E-value: 1.99e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 1 MQMLSMIVFLVMSLMASIAMLFMSSIFWVWVMTDVGTLFLIPFLSAETrpKKSWFTGVATYFVVQFFGSVMILGGIILDW 80
Cdd:MTH00144 1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKK--KSSESESVVKYFIIQSLGSSLLIFGSLIMY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 81 AIQATDCSSAMMCFGFALKLGMVPLHFWVSRSFVYFHYGGIFIVGAGQKVFVVACVPLFSDVPLCAYAYYLMAVGSMIYG 160
Cdd:MTH00144 79 NLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVLSALVG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 161 PIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSGDCKFMKNLGSELPGYYKTGFVC- 239
Cdd:MTH00144 159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIIs 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 240 IAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINLIVWVWVLFIATSSEVKEPGFLSgttgQNVLNMSCII 319
Cdd:MTH00144 239 LLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNS----SKVLNSSIIS 314
|
330
....*....|...
gi 229324837 320 WNLFMGAGFSMLY 332
Cdd:MTH00144 315 LNLLGGLLFLLLY 327
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-291 |
3.31e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 75.24 E-value: 3.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 1 MQMLSMIVFLVMSLMASIAMLFMSSIFWVWVMTDVGTLFLIPFLSAetrpKKSWFTGVAT--YFVVQFFGSVMILGGIIL 78
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISN----KKNLMSSESSlkYFLIQALASIILLFSIIL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 79 D--WAIQATDCSSAMMCFGFALKLGMVPLHFWVSRSFVYFHYGGIFIVGAGQKVFVVACVPLFSDVPLcayaYYLMAVGS 156
Cdd:MTH00160 78 NmlNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNF----IIIIIILS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 157 MIYGPIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSGDCKFMKNLGSELPG--YYK 234
Cdd:MTH00160 154 AIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKskKIK 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 229324837 235 TGFVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINLIVWVWVLF 291
Cdd:MTH00160 234 FLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY 290
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
6-296 |
6.66e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 74.62 E-value: 6.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 6 MIVFLVMSLMASIAMLFMSS-IFWVWVMTDVGTLFLIPFLSAETRPKKswFTGVATYFVVQFFGSVMIL-GGIILDWAIQ 83
Cdd:MTH00200 5 ILPLFILSLGLGTLLTFSSShWFLIWLGLEINTLAIIPLLIKQHHPRK--VEATTKYFIIQATASALLLfGGLLNAWTSG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 84 ATDCSS-------AMMCFGFALKLGMVPLHFWVSRSFVYFHYGGIFIVGAGQKVFVVACVPLFSDVpLCAYAYYLMAVGS 156
Cdd:MTH00200 83 QWGISEmlgplseTLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPA-LNSNILLLLGLLS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 157 MIYGPIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSGDCKFMKNLGSELPGYYKTG 236
Cdd:MTH00200 162 VLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILS 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 229324837 237 FVCIA--MSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINLIVWVWVLFIATSS 296
Cdd:MTH00200 242 MLLGLtlLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLT 303
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-283 |
1.55e-13 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 70.34 E-value: 1.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 1 MQMLSMIVFLVMSLMASIAMLFMSSIFWVWVMTDVGTLFLIPFLSAETRPKKSWFTgvATYFVVQFFGSVMILGGIILD- 79
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEAT--IKYFLVQAFSAAILLNGALIQa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 80 -----WAIQAT--DCSSAMMCFGFALKLGMVPLHFWVSRSFVYFHYGGIFIVGAGQKVFVVACVPLFSDVpLCAYAYYLM 152
Cdd:MTH00041 79 wlsgsWSINGPlnTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNL-LNSNILILC 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 153 AVGSMIYGPIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSGDCKFMKNLG--SELP 230
Cdd:MTH00041 158 GILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNklSQLN 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 229324837 231 GYYKTGFVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINL 283
Cdd:MTH00041 238 PISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSL 290
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-287 |
6.51e-12 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 65.46 E-value: 6.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 8 VFLVMSLMASIAMLFMSSIFWVWVMTDVGTLFLIPFLSaeTRPKKSWFTGVATYFVVQFFGSVMIL-GGIILDWAIQATD 86
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLS--QNKSITENEGAMKYFLFQEFGSALLLmGGSLSFSNLYLSL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 87 CSSAMMCFGFALKLGMVPLHFWVSRSFVYFHYGGIFIVGAGQKVFVVACVPLFSDVPLcayAYYLMAVGSMIYGPIAMFN 166
Cdd:MTH00197 80 LSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFM---GLLICSVLSSLIGGIGGMN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 167 AIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSGDCKFMKNLGS--ELPGYYKTGFVCIAMSF 244
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSnpESMSSNLVFLGLSFLSL 236
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 229324837 245 SGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINLIVWV 287
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYL 279
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-295 |
5.58e-11 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 62.49 E-value: 5.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 1 MQMLSMIVFLVMSLMASIAMLFMSSIFW--VWVMTDVGTLFLIPFLSAETRPKKSwfTGVATYFVVQFFGSVMILGGIIL 78
Cdd:MTH00011 1 MMSTFPTMFLFSSTMTLGTLMALSSNNWlfLWMGMELNLLSFVPLMTSSKMNQES--EAAVKYFLAQALGSGLLLLGMTM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 79 DWAI--QATDCSSAMMCFGFALKLGMVPLHFWVSRSFVYFHYGGIFIVGAGQKVFVVACVPLFSDVPLCAYAYYLMAVGS 156
Cdd:MTH00011 79 MWSFpsLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 157 MIYGPIAMfNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSGDCKFMKNLGSELPGYYKTG 236
Cdd:MTH00011 159 LAGGLGGM-NQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTS 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 229324837 237 FVCIAMSFS--GFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINLIVWVWVLFIATS 295
Cdd:MTH00011 238 MSLFIMLLSlgGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMY 298
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
9-293 |
1.44e-09 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 58.62 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 9 FLVMSLMASIAMLFMSS-IFWVWVMTDVGTL---FLIPFLSAETRPKKSWftgvaTYFVVQFFGSVMILGGIIL------ 78
Cdd:COG0651 111 PLFLLLLAGMNGAFLTGdLFNLFVFFEVMLLasyGLVALGGTKEALRAGL-----KYLILNLVGSALFLLGVGLlygatg 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 79 -----DWAIQATDCSS-------AMMCFGFALKLGMVPLHFWVSRSfvyfhYG------GIFIVGAGQKVFVVACV---- 136
Cdd:COG0651 186 tlnmaDLAARLAELDPglllaafALLLVGFGIKAALFPLHFWLPDA-----YPaapspvSALLSGLLTKVGVYAILrvlt 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 137 PLFSDVPLCAYAYYLMAVG--SMIYGPIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFML 214
Cdd:COG0651 261 LLFGADPALFLGTLLLVLGllTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 215 WSGDCKFMKNLGS----ELPGYYKT------GFVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINLI 284
Cdd:COG0651 341 FLAAGAIERATGTrdldKLGGLGKRmpltaaAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420
|
....*....
gi 229324837 285 VWVWVLFIA 293
Cdd:COG0651 421 YFVRIFGRA 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
95-281 |
3.62e-08 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 54.57 E-value: 3.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 95 GFALKLGMVPLHFWV---------SRSFVYFHYGGIFIVGAGQKVFVVACvplFSDVPLCAYAYYLMAVGSMIYGPIAMF 165
Cdd:TIGR01770 212 GLLFKLSAVPFHMWVpdvyegaptPVTAFFSIVPKIAIFAVFLRLFLYIL---FGFSEAWQIFLAIIAFLSMLIGNFGAL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 166 NAIAVKSFLAYSSVTHTGFLVIG----SFFGLHIVYAYSFIYCVSM--AFLVFMLWSGDCKFMKNLGSELPGYYKTG--- 236
Cdd:TIGR01770 289 AQKKVKRLLAYSSISHVGYILIGllagTLEGIKAVLFYIFIYALMSlgAFGVLSLLRSYKDEWIEYISDFAGLFKTNpil 368
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 229324837 237 ---FVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLI 281
Cdd:TIGR01770 369 ailILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVI 416
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
90-278 |
9.14e-08 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 53.20 E-value: 9.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 90 AMMCFGFALKLGMVPLHFWV------SRSFVyfhygGIFIVGAGQKVFVVACVPLFSDVPLCAYAY-----YLMAVGSMI 158
Cdd:COG1007 207 VLVLAGLAFKLSAVPFHMWTpdvyegAPTPV-----TAFLATAPKIAAFAALLRLLVEAFPGLAADwqlllAVLAVLSMT 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 159 YGPIAmfnAIA---VKSFLAYSSVTHTGFLVIG----SFFGLHIVYAYSFIYCVSM--AFLVFMLWSGDCKFMKNLgSEL 229
Cdd:COG1007 282 VGNLA---ALAqtnVKRMLAYSSIAHAGYLLLGlaagTPLGVSAALFYLLAYLFMNlgAFAVILLLSRKGGEAEEI-EDL 357
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 229324837 230 PGYYKT-GFVCIAM-----SFSGFPPFLDFCTKFVIIQLSMEQNST-ITITAVLTS 278
Cdd:COG1007 358 AGLARRsPLLALAMtifllSLAGIPPTAGFFGKFYVFSAAVEAGLYwLAVIAVLNS 413
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
90-284 |
2.61e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 51.80 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 90 AMMCFGFALKLGMVPLHFWVSRSFVYF-HYGGIFIVGAGQKV---------FVVACVPLFSDVPLCAYAYYLMAVgSMIY 159
Cdd:PRK08375 206 GFVLLALALKAAVFPLHTWLPRAYPAApPVVTALLSGLVTKVavyaliriyFTVFGGDFRFALGLGWLLAVLALL-SMLV 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 160 GPIAMFNAIAVKSFLAYSSVTHTGFLVIG-SFFGLHIVYA---YSFIYCVSMAFLVFMLWSGDCKFMKNLGSELPGYYKT 235
Cdd:PRK08375 285 GSLAALGQDDVKRVLAYSTVSQMGYILLGlALLTPLALAAgllHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRR 364
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 229324837 236 ------GFVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINLI 284
Cdd:PRK08375 365 mpltaaAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALL 419
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
90-278 |
8.55e-07 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 50.20 E-value: 8.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 90 AMMCFGFALKLGMVPLHFWV-------SRSFVYFHYGG--IFIVGAGQKVFVVACVPLFSDVplcAYAYYLMAVGSMIYG 160
Cdd:PRK05777 208 VFLLVGLAFKLSAVPFHMWTpdvyegaPTPVTAFLATApkIAAFAVLLRLLVVAFGGLSEDW---QQVLAIIAIASMLVG 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 161 PIAMFNAIAVKSFLAYSSVTHTGF----LVIGSFFGLHIVYAYSFIYCVSM--AFLVFMLWSGDCKFMKNLgSELPGYYK 234
Cdd:PRK05777 285 NLAALSQTNIKRLLAYSSIAHAGYllvgLAAGTAEGYSAVLFYLLAYLFMTlgAFGVISLLRRKGGEAESI-SDFAGLSK 363
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 229324837 235 TG------FVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNST-ITITAVLTS 278
Cdd:PRK05777 364 RSpllaavMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWwLAVIGVLNS 414
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
91-279 |
1.23e-06 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 49.23 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 91 MMCFGFALKLGMVPLHFWVSRSFVYFHY-GGIFIVGAGQKV----FVVACVPLFSDVPLCAYAYYLMAVGSMIYGPIAMF 165
Cdd:pfam00361 87 LILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAggygLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAAL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 166 NAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIY------CVSMAFLVFMLWSGDCK------FMKNLGSELPGYY 233
Cdd:pfam00361 167 VQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHllthglFSAGLFLCAGSVIYRRVhtrnirDYGGLAKTMPILA 246
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 229324837 234 KTGFVCiAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSS 279
Cdd:pfam00361 247 LVFLVA-MLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
156-280 |
1.88e-06 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 48.87 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 156 SMIYGPIAMFNAIAVKSFLAYSSVTHTGF----LVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSgdCKFMKNLGSELPG 231
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFvlwgIEIGSFESIQASLVYLFIYIIMSICVFSIILA--LNVYKNLIIEFSG 239
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 229324837 232 YYKT------GFVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTIT-ITAVLTSSL 280
Cdd:MTH00196 240 LSRRlpilaiTLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIfLLAVFCSVI 295
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
9-283 |
2.49e-06 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 48.38 E-value: 2.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 9 FLVMSLMASIAMLFMSSIFW--VWVMTDVGTLFLIPFLSAETRPKKswfTGVAT-YFVVQFFGSVMILGGIIL------D 79
Cdd:MTH00070 7 SILLSSLALGTMITLSSNHWflAWMGLEINTLAIIPLMTKTHHPRA---TEAATkYFLTQASASALILFSSTInawftgE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 80 WAIQ--ATDCSSAMMCFGFALKLGMVPLHFWVSRSFVYFHYGGIFIVGAGQKVFVVACVPLFSDVpLCAYAYYLMAVGSM 157
Cdd:MTH00070 84 WTIMnmQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHL-LNSNLLIIMGLLST 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 158 IYGPIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSGDCKFMKNLGSELPgyyKT-- 235
Cdd:MTH00070 163 LIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWS---KNpt 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 229324837 236 ---GFVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINL 283
Cdd:MTH00070 240 ltsMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSL 290
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
3-109 |
3.04e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 45.22 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 3 MLSMIVFLVMSLMASIAMLFMSSIFW--VWVMTDVGTLFLIPFLSAETRPKKswfTGVAT-YFVVQFFGSVMILGGIILD 79
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWllAWIGLEMNMLAIIPILMKKHNPRS---TEAATkYFLTQATASMLLMMAIIIN 77
|
90 100 110
....*....|....*....|....*....|....*...
gi 229324837 80 ------WAIQAT--DCSSAMMCFGFALKLGMVPLHFWV 109
Cdd:MTH00105 78 lmysgqWTITKLtnPTASTLMTIALAMKLGLAPFHFWV 115
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
2-280 |
6.47e-05 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 44.55 E-value: 6.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 2 QMLSMIVFLVMSLMASIAMLFMSSIFWVWVMTDVGTLFLIPFLSAETRPKKSWftgvaTYFVVQFFGSVMILGGII---- 77
Cdd:TIGR01972 107 EFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAM-----KFFLYTLAGSLLMLLAILglyf 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 78 --------LDWAIQATDCSSAMMCF-----GFALKLGMVPLHFWVSRSFVYFHYGGIFIVGA-----GQKVFVVACVPLF 139
Cdd:TIGR01972 182 lgggtfdlLELLNLPLPFGVQTWLFlaffiAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGvllkmGTYGFLRFNLPLF 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 140 SDVPLcAYAYYLMAVG--SMIYGPIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLW-- 215
Cdd:TIGR01972 262 PDASL-YFAPVLAALGviAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFll 340
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 229324837 216 ---------SGDCKFMKNLGSELPgYYKTGFVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSL 280
Cdd:TIGR01972 341 vgvlyerahTRDIAKYGGLANKMP-VLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVL 413
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
61-190 |
1.13e-04 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 43.53 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 61 YFVVQFFGSVMILGGIIL----------DW-AIQATDCSSAM-------MCFGFALKLGMVPLHFWVSRSFVYFHYGG-I 121
Cdd:COG1008 166 FFLYTLAGSLLMLVAILAlyflagaltfDIaELAAAPLPLTAqlllflaFFIAFAVKVPMFPFHTWLPDAHVEAPTAGsV 245
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 229324837 122 FIVGAGQKV----FVVACVPLFSDVPLcAYAYYLMAVG--SMIYGPIAMFNAIAVKSFLAYSSVTHTGFLVIGSF 190
Cdd:COG1008 246 LLAGVLLKMggygLLRFALPLFPEASA-YFAPLLAALGviGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIF 319
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
94-190 |
2.23e-04 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 42.88 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 94 FGFALKLGMVPLHFWVSRSFVYFHYGG-IFIVGAGQKV----FVVACVPLFSDVPLcAYAYYLMAVG--SMIYGPIAMFN 166
Cdd:PRK05846 219 IAFAVKMPMFPLHTWLPDAHVQAPTAGsVLLAGILLKMgaygLLRFSLPLFPDASH-EFAPIIITLGviAIIYGALVALA 297
|
90 100
....*....|....*....|....
gi 229324837 167 AIAVKSFLAYSSVTHTGFLVIGSF 190
Cdd:PRK05846 298 QTDIKKLIAYSSISHMGFVTLGIF 321
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
151-292 |
2.93e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 42.27 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 151 LMAVGSMIYGPIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLW-----------SGDC 219
Cdd:PRK12667 300 ILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFlasgvfihaagTRDI 379
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 229324837 220 KFMKNLGSELPgYYKTGFVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINLIVWVWVLFI 292
Cdd:PRK12667 380 DELAGLGRKMP-IASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-283 |
3.34e-04 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 42.12 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 1 MQMLSMIVFLvMSLMASiAMLFMSSIFWV--WVMTDVGTLFLIPFLSAETRPKKswfTGVAT-YFVVQFFGSVMILGGII 77
Cdd:MTH00112 1 MNPHAKLIIT-TSLILG-TIITISSNHWLmaWTGLEINTLAIIPLISKPHHPRA---TEAATkYFLTQAAASALILFSST 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 78 LD------WAI-QATDC-SSAMMCFGFALKLGMVPLHFWVSRSFVYFHYGGIFIVGAGQKVFVVACVPLFSDVpLCAYAY 149
Cdd:MTH00112 76 TNawntgqWDItQLTNPtSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNS-LNPTLL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 150 YLMAVGSMIYGPIAMFNAIAVKSFLAYSSVTHTGFLVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSGDCKFMKNLG--- 226
Cdd:MTH00112 155 LTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMtsw 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 229324837 227 SELPgYYKTGFVCIAMSFSGFPPFLDFCTKFVIIQLSMEQNSTITITAVLTSSLINL 283
Cdd:MTH00112 235 TKSP-TLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSL 290
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
99-278 |
2.02e-03 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 39.61 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 99 KLGMVPLHFWVSRsfVYfhYGGIFIVGAgqkvfvvacvpLFSDVPLCAYAYYLMAVG------------SMIYGPIAMFN 166
Cdd:MTH00199 203 KLSAAPFHMWAPD--VY--EGAPTITTA-----------LLATVPKIGVFSILVQIGpvtnvvlicavlSIIYGAIGALN 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229324837 167 AIAVKSFLAYSSVTHTGF----LVIGSFFGLHIVYAYSFIYCVSMAFLVFMLWSgdCKFMKNLGSELPGYYKTGFVcIAM 242
Cdd:MTH00199 268 QTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILS--LKLTKGLIVEVSGLSRKNPV-IAL 344
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 229324837 243 SF-------SGFPPFLDFCTKFVIIqLS--MEQNSTITITAVLTS 278
Cdd:MTH00199 345 TLaltflsiAGIPPLAGFLSKWLIL-LSgvSSGYYLICIIAVLSS 388
|
|
| |
