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Conserved domains on  [gi|229328230|ref|YP_002860245|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Crassostrea ariakensis]

Protein Classification

Na(+)/H(+) antiporter subunit C; NADH-quinone oxidoreductase subunit NuoK( domain architecture ID 10009589)

Na(+)/H(+) antiporter subunit C (MrpC) is part of a heterooligomeric complex together with MrpA, MrpB, MrpD, MrpE, MrpF and MrpG, which is involved in resistance to Na(+) and excretion of Li(+) and Na(+)| NADH-quinone oxidoreductase subunit K (NuoK) is part of the membrane domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-94 2.67e-15

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 214434  Cd Length: 97  Bit Score: 64.87  E-value: 2.67e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229328230  1 MMKMSLALFTMVFWVFFGAMLKKFSNFLSYLILMEGLCVSLGAMMICCQGVA--SAHSLFIFLVLVACETSLGLSLMVGI 78
Cdd:MTH00149  1 SMFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLIsfSSYLFLIILTFGACEASLGLSLLVSL 80

                        90
                ....*....|....*.
gi 229328230 79 MRNSDSGVYSLYSQCA 94
Cdd:MTH00149 81 IRLHGNDYVSSLSSLK 96
 
Name Accession Description Interval E-value
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-94 2.67e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 64.87  E-value: 2.67e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229328230  1 MMKMSLALFTMVFWVFFGAMLKKFSNFLSYLILMEGLCVSLGAMMICCQGVA--SAHSLFIFLVLVACETSLGLSLMVGI 78
Cdd:MTH00149  1 SMFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLIsfSSYLFLIILTFGACEASLGLSLLVSL 80

                        90
                ....*....|....*.
gi 229328230 79 MRNSDSGVYSLYSQCA 94
Cdd:MTH00149 81 IRLHGNDYVSSLSSLK 96
 
Name Accession Description Interval E-value
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-94 2.67e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 64.87  E-value: 2.67e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229328230  1 MMKMSLALFTMVFWVFFGAMLKKFSNFLSYLILMEGLCVSLGAMMICCQGVA--SAHSLFIFLVLVACETSLGLSLMVGI 78
Cdd:MTH00149  1 SMFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLIsfSSYLFLIILTFGACEASLGLSLLVSL 80

                        90
                ....*....|....*.
gi 229328230 79 MRNSDSGVYSLYSQCA 94
Cdd:MTH00149 81 IRLHGNDYVSSLSSLK 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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