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Conserved domains on  [gi|259019190|ref|YP_003204907|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Millerozyma farinosa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
13-80 1.67e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00180:

Pssm-ID: 444937  Cd Length: 99  Bit Score: 47.33  E-value: 1.67e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 259019190 13 VSQNNMITLTMGMEMLLLTVTVKMMYMGGEFDDMTGTMYAMIIMIMAGAESAMGLSMLVSYYRLRGRV 80
Cdd:MTH00180 22 LNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTI 89
 
Name Accession Description Interval E-value
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 13-80 1.67e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 47.33  E-value: 1.67e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 259019190 13 VSQNNMITLTMGMEMLLLTVTVKMMYMGGEFDDMTGTMYAMIIMIMAGAESAMGLSMLVSYYRLRGRV 80
Cdd:MTH00180 22 LNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTI 89
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
13-78 1.78e-03

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 34.08  E-value: 1.78e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 259019190  13 VSQNNMITLTMGMEMLLLTVTVKMMYMGGEFDDMTGTMYAMIIMIMAGAESAMGLSMLVSYYRLRG 78
Cdd:pfam00420 18 LLRRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHG 83
 
Name Accession Description Interval E-value
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 13-80 1.67e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 47.33  E-value: 1.67e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 259019190 13 VSQNNMITLTMGMEMLLLTVTVKMMYMGGEFDDMTGTMYAMIIMIMAGAESAMGLSMLVSYYRLRGRV 80
Cdd:MTH00180 22 LNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTI 89
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
16-80 2.67e-05

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 39.00  E-value: 2.67e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 259019190  16 NNMITLTMGMEMLLLTVTVKMMYMGGEFDDMTGTMYAMIIMIMAGAESAMGLSMLVSYYRLRGRV 80
Cdd:PRK05715  26 RNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAILLQLYRNRGTI 90
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 13-80 6.80e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 37.74  E-value: 6.80e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 259019190 13 VSQNNMITLTMGMEMLLLTVTVKMMYMGGEFDDMTGTMYAMIIMIMAGAESAMGLSMLVSYYRLRGRV 80
Cdd:MTH00001 22 LNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTI 89
ND4L MTH00192
NADH dehydrogenase subunit 4L; Provisional
 13-81 3.02e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177240  Cd Length: 99  Bit Score: 36.05  E-value: 3.02e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 259019190 13 VSQNNMITLTMGMEMLLLTVTVKMMYMGGEFDDMTGTMYAMIIMIMAGAESAMGLSMLVSYYRLRGRVT 81
Cdd:MTH00192 22 INKNNIILILMSIELILLAISYLLIVYSVTLDNLLGIIFSLMVLTVAAAESAIGLAILVAYFRLTGTIT 90
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
13-78 1.78e-03

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 34.08  E-value: 1.78e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 259019190  13 VSQNNMITLTMGMEMLLLTVTVKMMYMGGEFDDMTGTMYAMIIMIMAGAESAMGLSMLVSYYRLRG 78
Cdd:pfam00420 18 LLRRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHG 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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