NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|299830273|ref|YP_003734437|]
View 

NADH dehydrogenase subunit 10 (mitochondrion) [Paramecium caudatum]

Protein Classification

NuoB/complex I 20 kDa subunit family protein( domain architecture ID 10012723)

NuoB/complex I 20 kDa subunit family protein such as bacterial NADH-quinone oxidoreductase subunit B (NuoB) and mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, which are both part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

CATH:  3.40.50.12280
EC:  1.6.5.9
Gene Ontology:  GO:0051539|GO:0008137|GO:0045271|GO:0048038|GO:0016655|GO:0005886
PubMed:  30277212|1470679|33957129|23417064|24059520
SCOP:  4007641

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
1-142 6.43e-101

NADH-quinone oxidoreductase subunit NuoB;


:

Pssm-ID: 235797  Cd Length: 183  Bit Score: 287.26  E-value: 6.43e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   1 MKADFLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLIIVAGTVTNKMAPALRRL 80
Cdd:PRK06411  16 LNKGVVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRL 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 299830273  81 YDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:PRK06411  96 YDQMPEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQK 157
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
1-142 6.43e-101

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 287.26  E-value: 6.43e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   1 MKADFLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLIIVAGTVTNKMAPALRRL 80
Cdd:PRK06411  16 LNKGVVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRL 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 299830273  81 YDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:PRK06411  96 YDQMPEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQK 157
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 5-142 2.91e-95

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 271.53  E-value: 2.91e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273    5 FLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFG-VIFRATPRQSDLIIVAGTVTNKMAPALRRLYDQ 83
Cdd:TIGR01957   2 VLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQ 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 299830273   84 TADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:TIGR01957  82 MPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQK 140
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 8-142 5.65e-95

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 270.90  E-value: 5.65e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   8 TSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGV-IFRATPRQSDLIIVAGTVTNKMAPALRRLYDQTAD 86
Cdd:COG0377    2 TTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPE 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 299830273  87 PKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:COG0377   82 PKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQE 137
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
32-140 1.67e-32

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 111.91  E-value: 1.67e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   32 CALEMMHATVSRYDF-----DRFGVIFRATPR----QSDLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGY 102
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 299830273  103 YH----YSYAvVKGCDKIIPVDIFVPGCPPSAEALFFGVLQL 140
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
1-142 6.43e-101

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 287.26  E-value: 6.43e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   1 MKADFLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLIIVAGTVTNKMAPALRRL 80
Cdd:PRK06411  16 LNKGVVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRL 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 299830273  81 YDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:PRK06411  96 YDQMPEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQK 157
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 5-142 2.91e-95

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 271.53  E-value: 2.91e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273    5 FLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFG-VIFRATPRQSDLIIVAGTVTNKMAPALRRLYDQ 83
Cdd:TIGR01957   2 VLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQ 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 299830273   84 TADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:TIGR01957  82 MPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQK 140
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 8-142 5.65e-95

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 270.90  E-value: 5.65e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   8 TSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGV-IFRATPRQSDLIIVAGTVTNKMAPALRRLYDQTAD 86
Cdd:COG0377    2 TTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPE 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 299830273  87 PKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:COG0377   82 PKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQE 137
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 2-142 9.57e-66

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 198.57  E-value: 9.57e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   2 KADFLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLIIVAGTVTNKMAPALRRLY 81
Cdd:PRK14813  10 NHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRLY 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 299830273  82 DQTADPKWVLSMGSCANGGG-YYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:PRK14813  90 EQMPEPRYVLSMGSCSNCGGpYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQE 151
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
6-144 1.24e-64

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 198.29  E-value: 1.24e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   6 LKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGV-IFRATPRQSDLIIVAGTVTNKMAPALRRLYDQT 84
Cdd:PRK14819  17 LLTTVNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAeLFRASPRQADLMIVAGTVTKKMAPQVVRLYNQM 96

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273  85 ADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQKTL 144
Cdd:PRK14819  97 PEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQI 156
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 5-142 2.43e-62

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 189.39  E-value: 2.43e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   5 FLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLIIVAGTVTNKMAPALRRLYDQT 84
Cdd:PRK14818  16 LHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQM 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 299830273  85 ADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:PRK14818  96 PEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQE 153
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
11-142 6.70e-62

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 188.58  E-value: 6.70e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273  11 NNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGV-IFRATPRQSDLIIVAGTVTNKMAPALRRLYDQTADPKW 89
Cdd:PRK14816  32 DDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFeVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKY 111

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 299830273  90 VLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:PRK14816 112 VIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQR 164
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
3-142 1.12e-61

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 202.31  E-value: 1.12e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   3 ADFLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGV-IFRATPRQSDLIIVAGTVTNKMAPALRRLY 81
Cdd:PRK13292   5 ENILLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAeVLRGTPREADLMVIAGTVFKKMAPSILRLY 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 299830273  82 DQTADPKWVLSMGSCANGGGYYHYsYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQK 142
Cdd:PRK13292  85 EQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQE 144
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 1-144 3.16e-59

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 181.64  E-value: 3.16e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   1 MKADFLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGV-IFRATPRQSDLIIVAGTVTNKMAPALRR 79
Cdd:PRK14815  14 VEGNVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAeVMRFSPRQADVMIVAGTVTYKMALAVRR 93

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 299830273  80 LYDQTADPKWVLSMGSCANGGGYYHySYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQKTL 144
Cdd:PRK14815  94 IYDQMPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKI 157
ndhK CHL00023
NADH dehydrogenase subunit K
 8-153 7.09e-59

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 182.21  E-value: 7.09e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   8 TSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLIIVAGTVTNKMAPALRRLYDQTADP 87
Cdd:CHL00023  20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 299830273  88 KWVLSMGSCANGGGYYHY-SYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQKTLMKTINEKKV 153
Cdd:CHL00023 100 KYVIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRI 166
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
5-141 3.47e-53

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 166.16  E-value: 3.47e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   5 FLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFG---VIFraTPRQSDLIIVAGTVTNKMAPALRRLY 81
Cdd:PRK14820  18 FFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGserPSF--SPRQADMLMVMGTIAKKMAPVLKQVY 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273  82 DQTADPKWVLSMGSCANGGGYYHySYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQ 141
Cdd:PRK14820  96 LQMAEPRWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQ 154
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
5-144 4.02e-53

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 166.29  E-value: 4.02e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   5 FLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIF-RATPRQSDLIIVAGTVTNKMAPALRRLYDQ 83
Cdd:PRK14817  20 FLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMpRFSPRQADLLMVVGTVNCKQAPILQRVYEQ 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 299830273  84 TADPKWVLSMGSCANGGGYYHySYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQKTL 144
Cdd:PRK14817 100 MADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKI 159
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 9-144 4.48e-52

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 163.66  E-value: 4.48e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   9 SANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRA-TPRQSDLIIVAGTVTNKMAPALRRLYDQTADP 87
Cdd:PRK14814  22 NLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSfSPRQADMILVLGTITYKMAPVLRQIYDQMAEP 101

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 299830273  88 KWVLSMGSCANGGGYYHySYAVVKGCDKIIPVDIFVPGCPPSAEALFFGVLQLQKTL 144
Cdd:PRK14814 102 KFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKL 157
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
32-140 4.13e-48

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 151.87  E-value: 4.13e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273  32 CALEMMHATVSRYDFDRFGVIFRATPRQSDLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVK 111
Cdd:COG3260   20 CEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVGDCACSGGVFRDSYAVLG 99

                         90       100
                 ....*....|....*....|....*....
gi 299830273 112 GCDKIIPVDIFVPGCPPSAEALFFGVLQL 140
Cdd:COG3260  100 GVDKVIPVDVYIPGCPPRPEAILDGLLKA 128
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
32-140 1.67e-32

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 111.91  E-value: 1.67e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273   32 CALEMMHATVSRYDF-----DRFGVIFRATPR----QSDLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGY 102
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 299830273  103 YH----YSYAvVKGCDKIIPVDIFVPGCPPSAEALFFGVLQL 140
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
26-134 8.40e-07

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 46.84  E-value: 8.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299830273  26 TFGLACCA---------LEMMHATVSRYDFDRFGVI--FRATPRQSDLIIVAGTVTNK----MAPALRRlydQTadpKWV 90
Cdd:COG1941    8 TYWLAGCSgcqlsfldlDERLLDLLELVEIVYFPEAsdVKEIPEPVDVALVEGSIRNEeneeRLKEIRE---KS---KIL 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 299830273  91 LSMGSCANGGG----------------YYHYSYAV---------------VKGCDKIIPVDIFVPGCPPSAEALF 134
Cdd:COG1941   82 VALGACAVTGGipalrnlydleellerVYGETPSTnpqipgeelpelldrVRPLSEVVKVDYELPGCPPDPDQIL 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH