NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|511348506|ref|YP_008081434|]
View 

ribosomal protein L14 (chloroplast) [Tetracentron sinense]

Protein Classification

50S ribosomal protein L14( domain architecture ID 10000061)

50S ribosomal protein L14 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
rpl14 CHL00057
ribosomal protein L14
1-122 3.12e-89

ribosomal protein L14


:

Pssm-ID: 176997  Cd Length: 122  Bit Score: 254.04  E-value: 3.12e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506   1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYD 80
Cdd:CHL00057   1 MIQPQTYLNVADNSGARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRDNGMIIRFD 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 511348506  81 DNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
Cdd:CHL00057  81 DNAAVVIDQEGNPKGTRVFGPIARELREKNFTKIVSLAPEVL 122
 
Name Accession Description Interval E-value
rpl14 CHL00057
ribosomal protein L14
1-122 3.12e-89

ribosomal protein L14


Pssm-ID: 176997  Cd Length: 122  Bit Score: 254.04  E-value: 3.12e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506   1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYD 80
Cdd:CHL00057   1 MIQPQTYLNVADNSGARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRDNGMIIRFD 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 511348506  81 DNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
Cdd:CHL00057  81 DNAAVVIDQEGNPKGTRVFGPIARELREKNFTKIVSLAPEVL 122
RplN COG0093
Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L14 ...
1-122 2.18e-70

Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L14 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439863  Cd Length: 122  Bit Score: 206.45  E-value: 2.18e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506   1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYD 80
Cdd:COG0093    1 MIQQGTRLKVADNSGAKEVMCIKVLGGSRRRYAGVGDIIVVSVKKATPEGKVKKGQVVKAVVVRTKKEIRRPDGSYIRFD 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 511348506  81 DNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
Cdd:COG0093   81 DNAAVLINDDGEPKGTRIFGPVARELREKGFMKIASLAPEVL 122
Ribosomal_L14 pfam00238
Ribosomal protein L14p/L23e;
3-121 3.26e-67

Ribosomal protein L14p/L23e;


Pssm-ID: 425547  Cd Length: 119  Bit Score: 198.00  E-value: 3.26e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506    3 QPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDN 82
Cdd:pfam00238   1 QVGTRLNVADNSGAKEVMCIKVLGGSGRRYASVGDIIVVSVKKAKPNGKVKKGDVVKAVVVRTKKEIRRPDGSYIRFDDN 80
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 511348506   83 AAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEV 121
Cdd:pfam00238  81 AAVLINDKGEPKGTRIFGPVARELREKKFPKIVSLAPEV 119
rplN_bact TIGR01067
ribosomal protein L14, bacterial/organelle; This model distinguishes bacterial and most ...
1-122 8.70e-62

ribosomal protein L14, bacterial/organelle; This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273426  Cd Length: 122  Bit Score: 184.44  E-value: 8.70e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYD 80
Cdd:TIGR01067   1 MIQQQSRLNVADNSGAKKVQCIKVLGGSPRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAVIVRTKKGVRRKDGSYIRFD 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 511348506   81 DNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
Cdd:TIGR01067  81 DNACVLINKNKEPRGTRIFGPVARELRDKGFMKIVSLAPEVI 122
Ribosomal_uL14 cd00337
Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in ...
3-116 1.65e-55

Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in eukaryotes, L38 in fungal mitochondria) is part of the large ribosomal subunit, located between the centers of activity for peptidyl transferase and GTPase. uL14 has an "all beta" fold that binds 23S rRNA. Ribosomal proteins, which are components of ribosomal subunits, are RNA-binding proteins that might have multiple extra ribosomal functions and may be involved in tumorigenesis in mammals.


Pssm-ID: 466774  Cd Length: 114  Bit Score: 168.40  E-value: 1.65e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506   3 QPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDN 82
Cdd:cd00337    1 QVGTRLNVADNSGAKKVKCIKVLGKKGRRYAGVGDIIVVSVKKAKPEKKVKKGEVVKAVIVRTKKEIRRKDGSYIRFDDN 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 511348506  83 AAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVS 116
Cdd:cd00337   81 AVVLINKKGEPLGTRIFGPVARELRAKKFPKILS 114
 
Name Accession Description Interval E-value
rpl14 CHL00057
ribosomal protein L14
1-122 3.12e-89

ribosomal protein L14


Pssm-ID: 176997  Cd Length: 122  Bit Score: 254.04  E-value: 3.12e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506   1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYD 80
Cdd:CHL00057   1 MIQPQTYLNVADNSGARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRDNGMIIRFD 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 511348506  81 DNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
Cdd:CHL00057  81 DNAAVVIDQEGNPKGTRVFGPIARELREKNFTKIVSLAPEVL 122
RplN COG0093
Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L14 ...
1-122 2.18e-70

Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L14 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439863  Cd Length: 122  Bit Score: 206.45  E-value: 2.18e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506   1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYD 80
Cdd:COG0093    1 MIQQGTRLKVADNSGAKEVMCIKVLGGSRRRYAGVGDIIVVSVKKATPEGKVKKGQVVKAVVVRTKKEIRRPDGSYIRFD 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 511348506  81 DNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
Cdd:COG0093   81 DNAAVLINDDGEPKGTRIFGPVARELREKGFMKIASLAPEVL 122
Ribosomal_L14 pfam00238
Ribosomal protein L14p/L23e;
3-121 3.26e-67

Ribosomal protein L14p/L23e;


Pssm-ID: 425547  Cd Length: 119  Bit Score: 198.00  E-value: 3.26e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506    3 QPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDN 82
Cdd:pfam00238   1 QVGTRLNVADNSGAKEVMCIKVLGGSGRRYASVGDIIVVSVKKAKPNGKVKKGDVVKAVVVRTKKEIRRPDGSYIRFDDN 80
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 511348506   83 AAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEV 121
Cdd:pfam00238  81 AAVLINDKGEPKGTRIFGPVARELREKKFPKIVSLAPEV 119
rplN_bact TIGR01067
ribosomal protein L14, bacterial/organelle; This model distinguishes bacterial and most ...
1-122 8.70e-62

ribosomal protein L14, bacterial/organelle; This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273426  Cd Length: 122  Bit Score: 184.44  E-value: 8.70e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYD 80
Cdd:TIGR01067   1 MIQQQSRLNVADNSGAKKVQCIKVLGGSPRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAVIVRTKKGVRRKDGSYIRFD 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 511348506   81 DNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
Cdd:TIGR01067  81 DNACVLINKNKEPRGTRIFGPVARELRDKGFMKIVSLAPEVI 122
Ribosomal_uL14 cd00337
Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in ...
3-116 1.65e-55

Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in eukaryotes, L38 in fungal mitochondria) is part of the large ribosomal subunit, located between the centers of activity for peptidyl transferase and GTPase. uL14 has an "all beta" fold that binds 23S rRNA. Ribosomal proteins, which are components of ribosomal subunits, are RNA-binding proteins that might have multiple extra ribosomal functions and may be involved in tumorigenesis in mammals.


Pssm-ID: 466774  Cd Length: 114  Bit Score: 168.40  E-value: 1.65e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506   3 QPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDN 82
Cdd:cd00337    1 QVGTRLNVADNSGAKKVKCIKVLGKKGRRYAGVGDIIVVSVKKAKPEKKVKKGEVVKAVIVRTKKEIRRKDGSYIRFDDN 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 511348506  83 AAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVS 116
Cdd:cd00337   81 AVVLINKKGEPLGTRIFGPVARELRAKKFPKILS 114
rpl14p PRK08571
50S ribosomal protein L14P; Reviewed
2-118 1.20e-28

50S ribosomal protein L14P; Reviewed


Pssm-ID: 181478  Cd Length: 132  Bit Score: 101.14  E-value: 1.20e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506   2 IQPQTHLNVADNSGARELMCIRIIGASNRR----YAHIGDVIVAVIKEAVPNMpleRSEVIRAVIVRTCKELKRDNGMII 77
Cdd:PRK08571  12 LPVGARLVCADNTGAKEVEIISVKGYKGVKrrlpKAGVGDMVVVSVKKGTPEM---RKQVLRAVVVRQRKEYRRPDGTRV 88
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 511348506  78 RYDDNAAVVIDQEGNPKGTRVFGAIARELRQlNFTKIVSLA 118
Cdd:PRK08571  89 KFEDNAAVIVTPEGTPKGTEIKGPVAREAAE-RWPKIASIA 128
uL14_arch TIGR03673
50S ribosomal protein uL14, archaeal form; Part of the 50S ribosomal subunit. Forms a cluster ...
8-118 1.75e-25

50S ribosomal protein uL14, archaeal form; Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.


Pssm-ID: 274716  Cd Length: 131  Bit Score: 92.80  E-value: 1.75e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506    8 LNVADNSGARELMCIRIIGASNRR----YAHIGDVIVAVIKEAVPNMpleRSEVIRAVIVRTCKELKRDNGMIIRYDDNA 83
Cdd:TIGR03673  17 LVCADNTGAKEVEVISVKGYKGVKrrlpSAGVGDMVVVSVKKGTPEM---RKQVFRAVVVRQRKEYRRPDGTRVKFEDNA 93
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 511348506   84 AVVIDQEGNPKGTRVFGAIARELRQLnFTKIVSLA 118
Cdd:TIGR03673  94 AVIVTPDGEPKGTEIKGPVAREAAER-WPKIASIA 127
PTZ00054 PTZ00054
60S ribosomal protein L23; Provisional
8-122 5.14e-17

60S ribosomal protein L23; Provisional


Pssm-ID: 185418  Cd Length: 139  Bit Score: 71.29  E-value: 5.14e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511348506   8 LNVADNSGARELMCIRIIGASNR----RYAHIGDVIVAVIKEAVPNMpleRSEVIRAVIVRTCKELKRDNGMIIRYDDNA 83
Cdd:PTZ00054  25 VNCADNSGAKNLYIIAVKGIHGRlnrlPSASLGDMVLATVKKGKPEL---RKKVLNAVIIRQRKAWRRKDGVFIYFEDNA 101
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 511348506  84 AVVIDQEGNPKGTRVFGAIARELRQLnFTKIVSLAPEVL 122
Cdd:PTZ00054 102 GVIVNPKGEMKGSAITGPVAKECADL-WPKISSAAPAIV 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH