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Conserved domains on  [gi|558603157|ref|YP_008815271|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Pyrgilauda ruficollis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.24e-163

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 459.67  E-value: 2.24e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   1 MNPQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATILSLLSLLGLFFYLRLAYCTTITLPPHTTNHMKLWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 558603157 321 TNILVAILATMSIILLPISPMILTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.24e-163

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 459.67  E-value: 2.24e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   1 MNPQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATILSLLSLLGLFFYLRLAYCTTITLPPHTTNHMKLWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 558603157 321 TNILVAILATMSIILLPISPMILTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.96e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 2.96e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   91 HPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STAMKLPPITLLYMTSPSLNTT-----LLTTMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  165 GGWMGLNQTQIRKILAFSSISHLGWMTIII----VYNPKLTLLNFYLYSLMTATVFLALNSI-----KVLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 558603157  236 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-281 2.30e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.27  E-value: 2.30e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  11 FSLLLGTTITM----SSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAWhTGQW 84
Cdd:COG1007  105 YALLLFATLGMmlmaSANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  85 DITQLTHPVS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPITLLYMTSPS 148
Cdd:COG1007  184 NLAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 149 LN---TTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTL--LNFYL--YSLMTATVFLALNS 221
Cdd:COG1007  264 LAadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILL 343

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558603157 222 IK-----VLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATI 281
Cdd:COG1007  344 LSrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 5.24e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.39  E-value: 5.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   93 VSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLP---PITLLYMTSPS----LNTTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLN--FYL--YSLMTATVFLALNSIKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 558603157  227 ---LSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.24e-163

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 459.67  E-value: 2.24e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   1 MNPQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATILSLLSLLGLFFYLRLAYCTTITLPPHTTNHMKLWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 558603157 321 TNILVAILATMSIILLPISPMILTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.13e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 381.46  E-value: 2.13e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   1 MNPQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSlNTTLLTTMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATILSLLSLLGLFFYLRLAYCTTITLPPHTTNHMKLWHTNKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 558603157 321 TNIL-VAILATMSIILLPISPMILTII 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 2.22e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 378.49  E-value: 2.22e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   1 MNPQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTTLLTTMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATILSLLSLLGLFFYLRLAYCTTITLPPHTTNHMKLWHTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 558603157 321 TNILVAILATMSIILLPISPMILTII 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 1.89e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 338.36  E-value: 1.89e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   1 MNPQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTTLLTTMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATILSLLSLLGLFFYLRLAYCTTITLPPhTTNHMKL-WH-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKMkWQfEN 319

                        330       340
                 ....*....|....*....|....*..
gi 558603157 319 KPTNILVAILATMSIILLPISPMILTI 345
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.01e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 290.72  E-value: 1.01e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   1 MNPQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTTLLTTMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATILSLLSLLGLFFYLRLAYCTTITLPPHTTNHMKLWHTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 558603157 321 TNILVAILATMSIILLPISPMILTII 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 3.81e-76

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 237.91  E-value: 3.81e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   1 MNPQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTTLLTTMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATILSLLSLLGLFFYLRLAYCTTITLPPHTTNHMKLWHTNKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 558603157 321 TNILVAILATMSIILL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 3.59e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 178.09  E-value: 3.59e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   1 MNPQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  81 tgqwdITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTspsLNTTLLTTMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATILSLLSLLGLFFYLRLAYcTTITLPPHTTNHMKLWHTNKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|....*
gi 558603157 321 TNILVaILATMSIILLPISPMILTI 345
Cdd:MTH00160 312 SLILN-FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 1.37e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 158.13  E-value: 1.37e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   5 AKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  85 DITqlthpvscLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNT-TLLTTMAILSTA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 164 LGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSiKVLKLSTLMTAWTKVPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270
                 ....*....|....*....|....*....|..
gi 558603157 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 1.52e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 150.32  E-value: 1.52e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   7 LVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  87 TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTTLLTTMAILSTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 167 WMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTLMTAWTKVPSLNAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260
                 ....*....|....*....|....*....
gi 558603157 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 3.19e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 133.26  E-value: 3.19e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   8 VFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  88 qLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLymTSPSLNTTLLTTMAILSTALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 168 MGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLYSLMTATVFLALNSIKVLKLSTlMTAWTKVPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260
                 ....*....|....*....|....
gi 558603157 248 LLSLAG-LPPLTGFLPKWLIIQEL 270
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSL 255
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.96e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 2.96e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   91 HPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STAMKLPPITLLYMTSPSLNTT-----LLTTMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  165 GGWMGLNQTQIRKILAFSSISHLGWMTIII----VYNPKLTLLNFYLYSLMTATVFLALNSI-----KVLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 558603157  236 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-281 2.30e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.27  E-value: 2.30e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  11 FSLLLGTTITM----SSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAWhTGQW 84
Cdd:COG1007  105 YALLLFATLGMmlmaSANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  85 DITQLTHPVS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPITLLYMTSPS 148
Cdd:COG1007  184 NLAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 149 LN---TTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTL--LNFYL--YSLMTATVFLALNS 221
Cdd:COG1007  264 LAadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILL 343

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558603157 222 IK-----VLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATI 281
Cdd:COG1007  344 LSrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 2.82e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 101.65  E-value: 2.82e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  13 LLLGTTITMSSNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  79 WHTGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTTLLTTma 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGG-- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 159 ILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNP----KLTLLNFYLYSLMTATVFLALNSIKVLK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 558603157 233 AWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-281 8.91e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 95.66  E-value: 8.91e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  93 VS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPITLLYMTSPSLNTT---L 153
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTL--LNFYL--YSLMTATVFLALNSIK-----V 224
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 558603157 225 LKLSTL-MTAWTKvPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATI 281
Cdd:PRK05777 353 ESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 1.67e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.70  E-value: 1.67e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   8 VFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  87 ----TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTTLLTtmAILST 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 163 ALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNP----KLTLLNFYLYSLMTATVFLALNSIKVLK--LSTLMTAWTK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                        250       260       270
                 ....*....|....*....|....*....|.
gi 558603157 237 VPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 5.24e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.39  E-value: 5.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   93 VSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLP---PITLLYMTSPS----LNTTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLN--FYL--YSLMTATVFLALNSIKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 558603157  227 ---LSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-192 2.82e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 76.82  E-value: 2.82e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   3 PQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  74 SMTNAWHTGQ--------------WDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 558603157 140 TLLymTSPSLNTTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-281 6.87e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.18  E-value: 6.87e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   9 FIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQ 88
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  89 LTHPVS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAM-KLPP------ITLLYMTSPSLNT 151
Cdd:COG0651  192 LAARLAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 152 -TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLY----SLMTATVFLALNSIKVL- 225
Cdd:COG0651  272 gTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAt 351

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 558603157 226 ---KLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATI 281
Cdd:COG0651  352 gtrDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAV 410
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-208 6.42e-14

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 72.34  E-value: 6.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   7 LVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASALVL--FSSM--TNAWHT 81
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  82 GQWDI------TQLTHPVSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITL----LYMTSP 147
Cdd:CHL00049 194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558603157 148 SLNT---TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-IIVYNPK------LTLLNFYLY 208
Cdd:CHL00049 274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIF 344
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-195 4.29e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 70.08  E-value: 4.29e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  50 PRAIEAATKYFLVQAAASALVLF-SSMTNAWHTGQwdiTQLTH----------PVSCLILT---SAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAialalitspsLGLALALVfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 116 PEVLQGSPLTTGLLLSTAMKLP----PITLLYMTSPSLNT---TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....*..
gi 558603157 189 WMTIIIV 195
Cdd:PRK02504 314 FVMIGLV 320
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 2.68e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 58.17  E-value: 2.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  49 HPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQW--DITQLTH-----PVSCLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 119 LQGSPLTTGLLLSTAMK-----------LP--PITLLYMTspslntTLLTTMAILSTALGGWMGLNQTQIRKILAFSSIS 185
Cdd:COG1008  236 HVEAPTAGSVLLAGVLLkmggygllrfaLPlfPEASAYFA------PLLAALGVIGIIYGALVALAQTDLKRLIAYSSVS 309


                 ....*..
gi 558603157 186 HLGWMTI 192
Cdd:COG1008  310 HMGFVLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 2.05e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.49  E-value: 2.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSmtnAWHTGQWDI-------------TQLTHPVSCLIL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  99 TSAIAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTAMKLPPI--TLLYMTSPSLNTT----LLTTMAILSTALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 171 NQTQIRKILAFSSISHLGWMTI-----IIVY-NPKLT----------LLNFYLYSLMTATVFLA----LNSIKVLKLSTL 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 558603157 231 MTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 9-192 1.40e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 53.01  E-value: 1.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   9 FIFSLLLgttiTMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSM---TNAWhtgqwd 85
Cdd:PRK06458 117 FLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA------ 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  86 iTQLTHPVSCLILTSAIAM----------------------KLGLVPFHFWFPEVLQGSP-----LTTGLLLSTAMkLPP 138
Cdd:PRK06458 187 -TVMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAL-YAV 264

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 558603157 139 ITLLYMTSPSLNT----TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:PRK06458 265 LRYYILIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 2.09e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 52.62  E-value: 2.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTT-----LLTTMAILSTALGGWMGL 170
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADVpvwrpTVLVLGLATMLLGGWRAL 286

                         90       100
                 ....*....|....*....|....
gi 558603157 171 NQTQIRKILAFSSISHLGWMTIII 194
Cdd:PRK12644 287 RQHDLKLILAYGTVSQLGFLTVLV 310
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 2.59e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.86  E-value: 2.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   50 PRAIEAATKYFLVQAAASALVLFSSMTNAW-HTGQWDITQL-THPVSC-------LILTSAIAMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  119 ---LQGSPLTTGLLLSTA--------MKLPPITLLYMtspslnTTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygflrfnLPLFPDASLYF------APVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHM 305


                  ....*..
gi 558603157  188 GWMTIII 194
Cdd:TIGR01972 306 GFVLLGI 312
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-192 7.28e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 50.92  E-value: 7.28e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   7 LVFIFSLLLgttITMSSNHWIMaWTGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWD 85
Cdd:COG1009  118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  86 ITQLTH------------PVSCLILTSAIAmKLGLVPFHFWFPEVLQG-SPLTTgLLLSTAMKLPPITLLYMTSP--SLN 150
Cdd:COG1009  194 FSELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALS 271

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 558603157 151 TTLLTTMAI--LSTAL-GGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:COG1009  272 PVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-281 1.19e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 49.88  E-value: 1.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFS-SMTNAwHTGQWDITQLT------HPVSC--LILTSAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAgalaenPTVVTafGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 104 MKLGLVPFHFWFPEVLQG-SPLTTGLLLSTAMKLPP----------ITLLYMTSPSLNTtLLTTMAILSTALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVyaliriyftvFGGDFRFALGLGW-LLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 173 TQIRKILAFSSISHLGWMTIIIVYNPKLTLLN--FYL--YSLMTATVFLALNSIKVL----KLSTLMTAWTKVPSLNAML 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 558603157 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATI 281
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAV 409
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 2.22e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.98  E-value: 2.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  13 LLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  87 TQLTHPV----------SCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTT---- 152
Cdd:PRK08676 191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 558603157 153 ----LLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIII 194
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 3.36e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 48.66  E-value: 3.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  50 PRAIEAATKYFLVQAAASALVLFSSMTNAWH----TGQWDITQL-THPVSC-------LILTSAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 118 VLQ-----GSPLTTGLLLSTA------MKLPpitlLYMTSPSLNTTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISH 186
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGaygllrFSLP----LFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                 ....*...
gi 558603157 187 LGWMTIII 194
Cdd:PRK05846 313 MGFVTLGI 320
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 4.50e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 48.45  E-value: 4.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157   2 NPQAKLVFIFSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASALVLFSSMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  82 GQWDIT-------QLTHPVSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLT--------------TGLLLSTAMkL 136
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSfsavlsgqlsklgaYGFLLVLYV-L 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 137 PPITLL-----YMTSPSLNTTLLTTMAIlSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLT----LLNFYL 207
Cdd:PRK08668 254 PGTKLFsefgtYRGVPLFNYILAWLGNI-SIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFN 332

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558603157 208 YSLMTATVFLALNSI----KVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:PRK08668 333 HALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 1.83e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 46.27  E-value: 1.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFS-----SMTNAWHTGqwDITQLTHP--------VSCLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 100 SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITL------------LYMTSPSLNTTLLTtMAILSTALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFNNVFMI-LAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 168 MGLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLNFYLY----SLMTATVFLALNSIK----VLKLSTLMTAWTKVPS 239
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                        250       260
                 ....*....|....*....|....*...
gi 558603157 240 LNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 2.44e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 41.09  E-value: 2.44e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 558603157  295 RLAYCTTITLPPHTTNHMKLWHTNKPTNI-LVAILATMSIILLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 2.52e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 46.07  E-value: 2.52e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 109 VPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTT-----LLTTMAILSTALGGWMGLNQTQIRKILAFSS 183
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 184 ISHLGWMTIIIVYNPKLTLLNFYLY----SLMTATVFLALNSIK-------VLKLSTLmtaWTKVPSLNAMLLLTLLSLA 252
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSMA 368

                        170
                 ....*....|....
gi 558603157 253 GLPPLTGFLPKWLI 266
Cdd:PRK12647 369 GLPPLFGFLAKELI 382
PRK12650 PRK12650
DUF4040 family protein;
80-194 6.07e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.03  E-value: 6.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  80 HTGQW-DITQLTHPVSCLILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTT-----L 153
Cdd:PRK12650 196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwL 274

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 558603157 154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIII 194
Cdd:PRK12650 275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATI 315
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 2.39e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.76  E-value: 2.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  55 AATKYFLVQAAASALVLFSSMTNAWHTG--QWDITQL---THPVSCLILTSA-----IAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 124 LTTGLLLSTAMKLPPITLL------YMTSPSLNTTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYN 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 558603157 198 PKLTLL 203
Cdd:PRK06473 318 TPLSIL 323
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
96-268 2.51e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 2.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  96 LILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTAMKLPPI-------TLLYMTSPSLNTTLLTTMAILSTALGGWM 168
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 169 GLNQTQIRKILAFSSISHLGWMTIIIVYNPKLTLLN--FYLYS---LMTAtVFLALNSIKVL----KLSTLMTAWTKVPS 239
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHdmvVKTA-LFLIAGSLVRLtgyrSLQYLGGLYRKEPL 368

                        170       180
                 ....*....|....*....|....*....
gi 558603157 240 LNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 369 FGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 2.51e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.80  E-value: 2.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  55 AATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHP-----VSCLILTSAIAMKLGLVPFHFWFPEVLQGSP-----L 124
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558603157 125 TTGLLLSTAMKLPPITLLYMTSPSLN-TTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK08667 243 MSGVMLKVAVYGLVRFLMDVLSPELWwGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-268 2.87e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 42.64  E-value: 2.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  92 PVSCLILTSAI--AMKLGLvpfHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSP-----SLNTTLLTTMAILSTAL 164
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPlfekaPLTLLIITIFGALTAFF 302

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 165 GGWMGLNQTQIRKILAFSSISHLGWMTIIIVY--NPKLTLLNFYLYSLMTATVFLALNSI---------KVLKLSTLMTA 233
Cdd:MTH00032 303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS 382

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 558603157 234 wtkVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 383 ---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 6.38e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.56  E-value: 6.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  55 AATKYFLVQAAASALVLFSSMTNAWHTGQ--WDITQLTH---PVSCLILTS-----AIAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 118 ----VLQGSPLTTG--LLLSTAMKLPPITLLYMTSpslnttLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMT 191
Cdd:PRK12561 218 pvsmILAGVLLKMGgyALIRFNVQMLPDAHVYFAP------ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291


                 ...
gi 558603157 192 III 194
Cdd:PRK12561 292 LGI 294
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 9.18e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.97  E-value: 9.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  48 HHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHPVS---------------CLILTSAiAMKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 113 FWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTT-----LLTTMAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 188 GWMTIIIVYNPK------LTLLNFYL--YSLMTATVFLALNSI-------KVLKLSTLMTawtKVPSLNAMLLLTLLSLA 252
Cdd:PRK12649 315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGIVaheaatrDIRKLGGLRK---EMPITFIVASIAALAMA 391

                        250
                 ....*....|.
gi 558603157 253 GLPPLTGFLPK 263
Cdd:PRK12649 392 GIPPLNGFLSK 402
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 9.43e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.06  E-value: 9.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 101 AIAMKLGLVPFHFWFPEVLQGSPLTTGLLLS-TAMKLPPITLLYMTSPSLN------TTLLTTMAILSTALGGWMGLNQT 173
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGLVRLSWPILPlgaqnlAPAVIAMGIVGIVYGSFATCRQI 318

                         90       100
                 ....*....|....*....|..
gi 558603157 174 QIRKILAFSSISHLGWMTIIIV 195
Cdd:MTH00226 319 DVKRLVAYSSVAHMGLVSITLV 340
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-268 2.12e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 40.06  E-value: 2.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  95 CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSP-----SLNTTLLTTMAILSTALGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfeqaPLALIIVTIVGSLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 170 LNQTQIRKILAFSSISHLGWMTIII-VYNPKLTLLNFYLYSLMTATVFLALNSI--------KVLKLSTLMTAwtkVPSL 240
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLISF---LPLT 369

                        170       180
                 ....*....|....*....|....*...
gi 558603157 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020 370 YIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 2.50e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.70  E-value: 2.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  55 AATKYFLVQAAASALVLFSSMTNAWHTGQWD------ITQLTHPVSCLILTSAI----AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 124 LTTGLLLSTAMKLPPITL------LYMTSPSLNTTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYN 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 198 PKLTLL----NFYLYSLMTATVFLALNSIK-------VLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK07363 318 TQLSLLgavaQMISHGLILALLFHLVGIVErkvgtrdLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIV 397


                 ..
gi 558603157 267 IQ 268
Cdd:PRK07363 398 FQ 399
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 3.14e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.24  E-value: 3.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  52 AIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHPVSCLILTSAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 116 PEVLQGSPLTTGLLLSTAMKLPPITL------LYMTSPSLNTTLLTTMAIlsTA-LGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLvarmypVFEQFPAVMTVIAWTGAI--TAfLGASIALTQNDIKKGLAYSTISQLG 328


                 ..
gi 558603157 189 WM 190
Cdd:PRK07376 329 YM 330
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 6.79e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 38.01  E-value: 6.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTH--PVSCLILTSAIAMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 111 FHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNTT--LLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 189 WmtiiIVYNPKLTLLNFYLYSLMTATVFL---ALNSIKVLKLSTLMTAWTKVPSLnamlLLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK07234 283 F----ILAAPLVGGLYALAHGLVKSTLFLcagALPSRNFTELISQMLGIGKWIPL----TMASFSIAGFPLLAGFVSKVL 354


                 ....*.
gi 558603157 266 IIQELT 271
Cdd:PRK07234 355 TLKNLL 360
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 75-222 7.91e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 37.97  E-value: 7.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157  75 MTNAW---HTGQWDITQL-------THPVSCLILtsAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYM 144
Cdd:MTH00066 182 LSMAWlamNTNSWELQQIfllndnsTLPLLGLIL--AAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIR 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558603157 145 TSPSL--NTTLLTT---MAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIIVYN-PKLTLLNFYLYSLMTATVFLA 218
Cdd:MTH00066 260 FHPLLenNQTALTIclcLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNqPQLAFFHICTHAFFKAMLFLC 339


                 ....
gi 558603157 219 LNSI 222
Cdd:MTH00066 340 SGSI 343
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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