|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-340 |
4.01e-100 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 298.66 E-value: 4.01e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 1 MFYNSSKILFTTIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLML 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 81 ANNlnneINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKNLLLISVILSVII 160
Cdd:MTH00160 81 NLM----LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSL 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 241 FMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFMLNYFENNWIMEMNMNSNNTNLy 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL- 315
|
330 340
....*....|....*....|
gi 598323946 321 LIMTFFSIFGLFLISLFFFM 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-282 |
7.79e-31 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 118.18 E-value: 7.79e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 24 SNSWLGAWMGLEINLLSFIPLLSDN-NNLMSTEASLKYFLTQALASTVLLFSSIL-------------LMLANNLNNEIN 89
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgtlsfdelSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 90 ESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMN-ALMLMTWQKIAPLMLI--------SYLNIKNLLLISVILSVII 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMI----SESIWLIYFIFYSFLSFVLTFMFNIF-----KLFHLNQLFSWFV 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 598323946 232 NSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMST 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
13-298 |
3.14e-21 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 94.03 E-value: 3.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 13 IMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQALASTVLLF--------------SSIL 77
Cdd:COG1007 110 FATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAGIA 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 78 LMLANNLNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIA----------PLMLISYLNIK 147
Cdd:COG1007 190 AALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaallrllvEAFPGLAADWQ 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 148 NLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMIS-----ESIwLIYFIFYSFLSF----VLTFM---- 214
Cdd:COG1007 270 LLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGtplgvSAA-LFYLLAYLFMNLgafaVILLLsrkg 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 215 FNIFKLFHLNQLFSwfvNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICY 294
Cdd:COG1007 349 GEAEEIEDLAGLAR---RSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
....
gi 598323946 295 SAFM 298
Cdd:COG1007 426 AMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
13-338 |
2.90e-20 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 91.16 E-value: 2.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 13 IMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQALASTVLLF--------------SSIL 77
Cdd:TIGR01770 110 FALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLL 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 78 LMLANNLNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLI----------SYLNIK 147
Cdd:TIGR01770 190 LFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyilfgFSEAWQ 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 148 NLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESI--------WLIYFIFY--SFLSFVLTFMFNI 217
Cdd:TIGR01770 270 IFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikavlfyIFIYALMSlgAFGVLSLLRSYKD 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 218 FKLFHLNQLFSWFVNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAF 297
Cdd:TIGR01770 350 EWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMY 429
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 598323946 298 MlnYFENNWIMEMNMNSNNTNLYLIMTFFSIFGLFLISLFF 338
Cdd:TIGR01770 430 F--DKPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-340 |
4.01e-100 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 298.66 E-value: 4.01e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 1 MFYNSSKILFTTIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLML 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 81 ANNlnneINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKNLLLISVILSVII 160
Cdd:MTH00160 81 NLM----LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSL 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 241 FMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFMLNYFENNWIMEMNMNSNNTNLy 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL- 315
|
330 340
....*....|....*....|
gi 598323946 321 LIMTFFSIFGLFLISLFFFM 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
6-333 |
3.08e-72 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 227.78 E-value: 3.08e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 6 SKILFTTIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLMLANNL- 84
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQw 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 85 -NNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAP---LMLISYLNIKNLLLISVILSVII 160
Cdd:MTH00112 85 dITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPltlLLMTSNSLNPTLLLTLAILSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSL 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 241 FMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFM-LNYFENNWIMEMNMNSNNTNL 319
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTItLPPNTTNMMMKWRTKPKKNTL 324
|
330
....*....|....
gi 598323946 320 YLIMTFFSIFGLFL 333
Cdd:MTH00112 325 TATLTTLSTLLLPL 338
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
16-295 |
1.75e-65 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 210.43 E-value: 1.75e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 16 IGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLMLAN--NLNNEINESFT 93
Cdd:MTH00135 15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTgqWDIQQMSHPLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 94 SMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKN--LLLISVILSVIIGAIGGLNQTSL 171
Cdd:MTH00135 95 TTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNptLLITLGLTSTLVGGWGGLNQTQL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 172 RKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSLFMNFLSLGGLP 251
Cdd:MTH00135 175 RKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLP 254
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 598323946 252 PFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYS 295
Cdd:MTH00135 255 PLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYA 298
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
8-336 |
2.61e-65 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 209.70 E-value: 2.61e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 8 ILFTTIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLMLAN--NLN 85
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSgqWTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 86 NEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLI----SYLNIkNLLLISVILSVIIG 161
Cdd:MTH00105 87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqisPSINP-NLLLTLAILSILIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 162 AIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSLF 241
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 242 MNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFmLNYFENNWIMEMNMNSNNTNLYL 321
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTS-LTMFPSTNNMKMKWQFENTKPMT 324
|
330
....*....|....*
gi 598323946 322 IMTFFSIFGLFLISL 336
Cdd:MTH00105 325 LLPTLIILSTMLLPL 339
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
16-295 |
1.90e-62 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 202.46 E-value: 1.90e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 16 IGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLMLAN--NLNNEINESFT 93
Cdd:MTH00070 15 LGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTgeWTIMNMQTPLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 94 SMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLML---ISYLNIKNLLLISVILSVIIGAIGGLNQTS 170
Cdd:MTH00070 95 TIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALliqISHLLNSNLLIIMGLLSTLIGGWGGLNQTQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 171 LRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSLFMNFLSLGGL 250
Cdd:MTH00070 175 LRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGL 254
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 598323946 251 PPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYS 295
Cdd:MTH00070 255 PPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-341 |
2.68e-60 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 197.08 E-value: 2.68e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 1 MFYNSSKILFTTImIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLML 80
Cdd:MTH00041 1 MNRNVLIFLITSI-ILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAW 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 81 AN--NLNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLN---IKNLLLISVI 155
Cdd:MTH00041 80 LSgsWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISnllNSNILILCGI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 156 LSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKI 235
Cdd:MTH00041 160 LSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 236 LKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFMLNYFENNWIMEMNMNSN 315
Cdd:MTH00041 240 SAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSG 319
|
330 340 350
....*....|....*....|....*....|
gi 598323946 316 NTNLYL----IMTFFSIFGLFLISLFFFML 341
Cdd:MTH00041 320 NITVYGvilsILSSISILGLLLIPLFLSFL 349
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
9-341 |
2.32e-52 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 176.31 E-value: 2.32e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 9 LFTTIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLMLANNL--NN 86
Cdd:MTH00200 8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQwgIS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 87 EINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLML---ISYLNIKNLLLISVILSVIIGAI 163
Cdd:MTH00200 88 EMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALliqLAPALNSNILLLLGLLSVLVGGW 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 164 GGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSLFMN 243
Cdd:MTH00200 168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLT 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 244 FLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFMLNYFENNWIMEMNMNSNNTNLYL-I 322
Cdd:MTH00200 248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVgL 327
|
330
....*....|....*....
gi 598323946 323 MTFFSIFGLFLISLFFFML 341
Cdd:MTH00200 328 LLLLSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
5-339 |
1.50e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 170.84 E-value: 1.50e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 5 SSKILFTTIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLMLANnl 84
Cdd:MTH00144 4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLS-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 85 nneiNESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLN----IKNLLLISVILSVII 160
Cdd:MTH00144 82 ----FSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlywLAYLLCVISVLSALV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSL 240
Cdd:MTH00144 158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSII 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 241 FMnFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFMLNYFennwimeMNMNSNNTNLY 320
Cdd:MTH00144 238 SL-LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSK-------SKKSNSSKVLN 309
|
330
....*....|....*....
gi 598323946 321 LIMTFFSIFGLFLISLFFF 339
Cdd:MTH00144 310 SSIISLNLLGGLLFLLLYL 328
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
9-299 |
7.62e-49 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 166.49 E-value: 7.62e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 9 LFTTIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLMLANNLNNei 88
Cdd:MTH00011 10 LFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLK-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 89 neSFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYL---NIKNLLLISVILSVIIGAIGG 165
Cdd:MTH00011 88 --NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtshNILPMMTSMAAMSALAGGLGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 166 LNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSLFMNFL 245
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 598323946 246 SLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFML 299
Cdd:MTH00011 246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-334 |
3.58e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 156.76 E-value: 3.58e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 9 LFTTIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLMLANNLnnei 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 89 nESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYL-NIKNLLLISVILSVIIGAIGGLN 167
Cdd:MTH00197 78 -SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNsSSFMGLLICSVLSSLIGGIGGMN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 168 QTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSLFMNFLSL 247
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 248 GGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFMLNYFENNWIMEMNMNSNNTNLYLIMTFFS 327
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPL 316
|
....*..
gi 598323946 328 IFGLFLI 334
Cdd:MTH00197 317 LMIFTMI 323
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-282 |
7.79e-31 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 118.18 E-value: 7.79e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 24 SNSWLGAWMGLEINLLSFIPLLSDN-NNLMSTEASLKYFLTQALASTVLLFSSIL-------------LMLANNLNNEIN 89
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgtlsfdelSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 90 ESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMN-ALMLMTWQKIAPLMLI--------SYLNIKNLLLISVILSVII 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMI----SESIWLIYFIFYSFLSFVLTFMFNIF-----KLFHLNQLFSWFV 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 598323946 232 NSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMST 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
15-339 |
8.25e-29 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 114.36 E-value: 8.25e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 15 IIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDN-NNLMSTEASLKYFLTQALASTVLLFSSI---------------LL 78
Cdd:MTH00196 3 ALGILCLISSSNWLSVYLAIELQTLSLFILIAQNrGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyinLV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 79 MLANNLNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPL-MLISYLNIKNLLLISVILS 157
Cdd:MTH00196 83 LNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFsILVSIGLNVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 158 VIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMIS--ESI-----WLIYFIFYSFLSFVLTFMFNIFKLFhLNQLFSWF 230
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGsfESIqaslvYLFIYIIMSICVFSIILALNVYKNL-IIEFSGLS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 231 VNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFMLNyfENNWIMEM 310
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIVKILFFQA--NSFLLIST 319
|
330 340
....*....|....*....|....*....
gi 598323946 311 NMNSNNTNLYLIMTFFSIFGLFLISLFFF 339
Cdd:MTH00196 320 KILKKENKINLRKALLIGFSLYLILFTIL 348
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
5-341 |
9.56e-28 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 112.80 E-value: 9.56e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 5 SSKILFTTIMIIGTLITVTSNSWLGAWMGLEINLLS-FIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLMLAN- 82
Cdd:MTH00199 97 QSSPILILIVALGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTg 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 83 -NLNNEIN----ESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPL-MLISYLNIKNLLLISVIL 156
Cdd:MTH00199 177 eTSIQGINsiltGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFsILVQIGPVTNVVLICAVL 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 157 SVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMIS--ESIW--LIYFIFY---SFLSFVLTFMFNIFKLFhLNQLFSW 229
Cdd:MTH00199 257 SIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGsfESIQasLIYMIIYvimSICSFSIILSLKLTKGL-IVEVSGL 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 230 FVNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYsafmLNYFENNWIME 309
Cdd:MTH00199 336 SRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ----IIYFQADYSIL 411
|
330 340 350
....*....|....*....|....*....|..
gi 598323946 310 MNMNSNNTNLYLIMTFFSIFGLFLISLFFFML 341
Cdd:MTH00199 412 IWQKVLKKEERLDLSKSILIGVTFFIILFLMI 443
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
13-292 |
6.06e-23 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 99.12 E-value: 6.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 13 IMIIGTLITVTSNSWLGAWMGLEI-NLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLL--------------FSSIL 77
Cdd:PRK05777 111 FALLGMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIA 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 78 LMLANNLNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIA---PLMLISYL-------NIK 147
Cdd:PRK05777 191 KALADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaVLLRLLVVafgglseDWQ 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 148 NLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMI----SESIWLIYFIFYSFLSF----VLTFMFNifK 219
Cdd:PRK05777 271 QVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAgtaeGYSAVLFYLLAYLFMTLgafgVISLLRR--K 348
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 598323946 220 LFHLNQLFSW---FVNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRI 292
Cdd:PRK05777 349 GGEAESISDFaglSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
13-298 |
3.14e-21 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 94.03 E-value: 3.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 13 IMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQALASTVLLF--------------SSIL 77
Cdd:COG1007 110 FATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAGIA 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 78 LMLANNLNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIA----------PLMLISYLNIK 147
Cdd:COG1007 190 AALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaallrllvEAFPGLAADWQ 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 148 NLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMIS-----ESIwLIYFIFYSFLSF----VLTFM---- 214
Cdd:COG1007 270 LLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGtplgvSAA-LFYLLAYLFMNLgafaVILLLsrkg 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 215 FNIFKLFHLNQLFSwfvNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICY 294
Cdd:COG1007 349 GEAEEIEDLAGLAR---RSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
....
gi 598323946 295 SAFM 298
Cdd:COG1007 426 AMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
13-338 |
2.90e-20 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 91.16 E-value: 2.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 13 IMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQALASTVLLF--------------SSIL 77
Cdd:TIGR01770 110 FALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLL 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 78 LMLANNLNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLI----------SYLNIK 147
Cdd:TIGR01770 190 LFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyilfgFSEAWQ 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 148 NLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESI--------WLIYFIFY--SFLSFVLTFMFNI 217
Cdd:TIGR01770 270 IFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikavlfyIFIYALMSlgAFGVLSLLRSYKD 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 218 FKLFHLNQLFSWFVNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAF 297
Cdd:TIGR01770 350 EWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMY 429
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 598323946 298 MlnYFENNWIMEMNMNSNNTNLYLIMTFFSIFGLFLISLFF 338
Cdd:TIGR01770 430 F--DKPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
13-292 |
7.30e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 84.53 E-value: 7.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 13 IMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMST---------EASLKYFLTQALASTVLLFS--------- 74
Cdd:MTH00198 196 IVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcalyfgftg 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 75 ------SILLMLANNLNNEINE-SFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIK 147
Cdd:MTH00198 276 negmlgTILSATLETTNIELRQgSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVIT 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 148 NLLLISV-ILSVIIGAIGGLNQTSLRKLMAFSSINHLGWML--------SSLMISESIWLIYFIfYSFLSFVLTFMFNIF 218
Cdd:MTH00198 356 SKLLLSVaIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILigvsagtyESLQASWTYAVTYLV-SALASFTVICTLEEF 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 219 KLFHLNQ-----------LFSWFVNSKILK-------FSLFMNFLSLGGLPPFLGFLPKWLV------IQQLTMCNQYFL 274
Cdd:MTH00198 435 GTRTPTSrqrdgsfgnynLVRRLVDLTILSrgqpyiaFSLAIVFLSLAGIPPLLGFLGKWFIlvgsikIAFSSSLSIYYL 514
|
330
....*....|....*....
gi 598323946 275 LTLM-MMSTLITLFFYLRI 292
Cdd:MTH00198 515 VALFaIICTCISAFYYIRI 533
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
13-296 |
2.16e-12 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 67.48 E-value: 2.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 13 IMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLMLAN---------N 83
Cdd:COG0651 115 LLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATgtlnmadlaA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 84 LNNEINESFTS---MIIMSALLLKSGAAPFHFWFPN-----------MMEGLTWMNAL--MLMTWQKIAPLMLISYLNIk 147
Cdd:COG0651 195 RLAELDPGLLLaafALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT- 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 148 nLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSFLS-FVLTFMF----NIFKLFH 222
Cdd:COG0651 274 -LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHaLAKALLFlaagAIERATG 352
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 598323946 223 ---LNQLFSWFVNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSA 296
Cdd:COG0651 353 trdLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-298 |
8.72e-12 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 65.67 E-value: 8.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 34 LEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFS---------SILLMLANNLNNEINESFTSM-IIMSALLL 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllygvtgTLNMADLAGALAENPTVVTAFgFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 104 KSGAAPFHFWFPNMMEGLTWMNALML-MTWQKIAPLMLI------------SYLNIKNLLLISVILSVIIGAIGGLNQTS 170
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLsGLVTKVAVYALIriyftvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 171 LRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSF--------LSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSLFM 242
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalmkgaLFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAV 374
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 598323946 243 NFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAFM 298
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFF 430
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
149-333 |
3.44e-10 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 61.12 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 149 LLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFY--------SFLSFVLTFMFNIFKL 220
Cdd:PRK12663 274 LLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYlvhdmvvkTALFLIAGSLVRLTGY 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 221 FHLNQLFSWFVNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRIcysaFMLN 300
Cdd:PRK12663 354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI----FFLA 429
|
170 180 190
....*....|....*....|....*....|...
gi 598323946 301 YFENNWIMEMNMNSNNTNLYLIMTFFSIFGLFL 333
Cdd:PRK12663 430 YWGDKDGEEVNFKPIPLYRKLPLSILAVVVIAM 462
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
13-298 |
5.21e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 57.41 E-value: 5.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 13 IMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQALASTVLLFS--------SILLMLANN 83
Cdd:PRK08376 129 LLELGMLGMAITGDLFNFFVFLEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqyGTLNMAYLA 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 84 LNNEINESFTSMIIMS----ALLLKSGAAPFHFWFPNMM-EGLTWMNALMLMTWQ-KIAPLMLISY------LNIKNLLL 151
Cdd:PRK08376 209 VKMSENPTVVAKIALAlfiaGLAMKSGAVPVHMWLPDAYpAAPSSISAMLLVIKQaGLYALARVLFsiygpaINLATVGW 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 152 ISVI---LSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIW---------------LIYFIFYSFLSFVLTF 213
Cdd:PRK08376 289 VIIIlgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLF 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 214 M-----FNIFKLFHLNQLFSWFVNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQyFLLTLMMMSTLITLFF 288
Cdd:PRK08376 369 LtagavIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNP-ILGVIAMIGSVLTLAS 447
|
330
....*....|
gi 598323946 289 YLRICYSAFM 298
Cdd:PRK08376 448 FVKVFHTAFF 457
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
53-292 |
9.55e-09 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 56.55 E-value: 9.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 53 STEASLKYFLTQALASTVLL---------------FSSILLMLANNLNNEINESFTSMI-IMSALLLKSGAAPFHFWFPN 116
Cdd:CHL00049 160 SNEATMKYLLMGGASSSILVygfswlyglsggeieLQEIVNGLINTQMYNSPGISIALIfITVGIGFKLSLAPFHQWTPD 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 117 MMEGLTWMNALMLMTWQKIAPLML-ISYLNI---------KNLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWM 186
Cdd:CHL00049 240 VYEGSPTPVVAFLSVTSKVAASALaTRIFDIpfyfssnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYV 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 187 LSSLMISESiwliYFIFYSFLSFVLTFMFNIFKLFHLNQLFS-------------WFVNSKILKFSLFMNFLSLGGLPPF 253
Cdd:CHL00049 320 IIGIIVGDS----NDGYASMITYMLFYIFMNLGTFACIVLFGlrtgtdnirdyagLYTKDPFLALSLALCLLSLGGIPPL 395
|
250 260 270
....*....|....*....|....*....|....*....
gi 598323946 254 LGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRI 292
Cdd:CHL00049 396 AGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
53-292 |
2.35e-08 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 55.44 E-value: 2.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 53 STEASLKYFLTQALASTVLLFSSILLMLANNLNNEINESFTSMIIMSALLL-------------KSGAAPFHFWFPNMME 119
Cdd:PRK02504 159 SNEAALKYLLIGAASSAIFLYGSSLLYGLSGGSTQLSAIALALITSPSLGLalalvfviagiafKISAVPFHQWTPDVYE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 120 GLTWMNALMLMTWQKIAPLML-ISYLNI---------KNLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSS 189
Cdd:PRK02504 239 GSPTPVVAFLSVGSKAAGFALaIRLLVTafpsfdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIG 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 190 LMISESIWLIYFIFYsflsfVLTFMFNIFKLFHLNQLFSWFVNSK-------------ILKFSLFMNFLSLGGLPPFLGF 256
Cdd:PRK02504 319 LVAGTEAGYASMVFY-----LLAYLFMNLGAFACVILFSLRTGTDqisdyaglyqkdpLLTLGLSLCLLSLGGIPPLAGF 393
|
250 260 270
....*....|....*....|....*....|....*.
gi 598323946 257 LPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRI 292
Cdd:PRK02504 394 FGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
148-297 |
3.83e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 51.51 E-value: 3.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 148 NLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWL---IYFIFYSFLsfVLTFMFNIFKLFH-- 222
Cdd:PRK12665 274 TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLsgaIYYVAHHIT--VQTTLFLVVGLIErq 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 223 -----LNQLFSWFVNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQ---QLTMCNQYFLLTLMMMSTLITLFFYLRICY 294
Cdd:PRK12665 352 agsssLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEagaEDGTWLAWALVAGGVVTSLLTLYAVARVWT 431
|
...
gi 598323946 295 SAF 297
Cdd:PRK12665 432 KAF 434
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
93-186 |
3.92e-06 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 48.50 E-value: 3.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 93 TSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALM---LMTWQKIAPLMLISYL----NIKNLLLISV-ILSVIIGAIG 164
Cdd:PRK12650 210 VAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLhaaAVVKAGIYLLLRFSPVfhdvAVWNWLLIIVgMITALMGAVF 289
|
90 100
....*....|....*....|..
gi 598323946 165 GLNQTSLRKLMAFSSINHLGWM 186
Cdd:PRK12650 290 AVQKTDLKKLTAYSTVSQLGWI 311
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
148-297 |
1.15e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 46.87 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 148 NLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFY--------SFLSFVLTFMFNIFK 219
Cdd:PRK07691 276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYlihdmivkAALFLLIGIMIKITG 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 598323946 220 LFHLNQLFSWFVNSKILKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMMSTLITLFFYLRICYSAF 297
Cdd:PRK07691 356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGF 433
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
3-307 |
2.70e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 45.58 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 3 YNSSKILFTTIMIIGTLITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSSILLM--- 79
Cdd:PRK06589 114 SSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIytk 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 80 -----LANNLNNEINESFTSMIIMSALLLKSGAAPFHFWFPNMMEGLTWMNALM----------LMTWQKIAPLMLISYL 144
Cdd:PRK06589 194 tgnldFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktglFCIYKILLYIFGLSYL 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 145 NI----KNLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMI----SESIWLIYFIFYSFLSFVLTF-MF 215
Cdd:PRK06589 274 QRifaeFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIltpkALGAAILHLVSHSFAKICLFYsMG 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 216 NIFKLFHLNQLFSWFVNSKILKFSLFM---NFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMM----STLITLFF 288
Cdd:PRK06589 354 SIYSLKKEDQVDKLHGTSKSFPLISFIisiSSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLvviaSSILSALY 433
|
330
....*....|....*....
gi 598323946 289 YLRICYSAFMLNYFENNWI 307
Cdd:PRK06589 434 LLKILSSIYKPSLSENSFI 452
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
287-335 |
3.01e-05 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 41.09 E-value: 3.01e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 598323946 287 FFYLRICYSAFM-LNYFENNWIMEMNMNSN-NTNLYLIMTFFSIFGLFLIS 335
Cdd:pfam06444 1 FFYLRLSYSTTLtLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
95-280 |
7.42e-05 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 44.36 E-value: 7.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 95 MIIMSALLLKSGAAPFHFWFPNM-MEGLTWMNALMLMTWQKIAPLMLISYLNI----------KNLLLISVILSVIIGAI 163
Cdd:PRK08676 210 LFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSALlrqsgaaeqfSNVLIGLGIFSIAVAAF 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 164 GGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFY--------SFLSFVLTFMFNIFKLFHLNQLFSWFVNSKI 235
Cdd:PRK08676 290 SMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHmlahslvkSGLFFSAGILHRQYRSDRFDRIFDVFRLQPV 369
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 598323946 236 LKFSLFMNFLSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMM 280
Cdd:PRK08676 370 AAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLL 414
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
101-329 |
1.18e-04 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 42.94 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 101 LLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKNLLLIsVILSVIIGAIGGLNQTSLRKLMAFSSI 180
Cdd:MTH00091 67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFL-LLFGLLICFFQMFLLKSYKNLLILSST 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 181 NHLGWMLSSLMISESIWLIYFIFYSFLSFVLTFMFNifklfhlnqlfswfvNSKILKFSLFMNFLSLGGLPPFLGFLPKW 260
Cdd:MTH00091 146 ESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFN---------------NVNKLNFVSWETLLVFMNLPFSVTFFVKI 210
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 598323946 261 LVIQQLTMCNQYFLLTLMMMSTLITLFFylricySAFMLNYFENNWIMEMNMNSNNTNLYLIMTFFSIF 329
Cdd:MTH00091 211 FSLSEILKVLGFFLLFLLFLMFLSVLSL------SFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
3-298 |
2.49e-03 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 39.59 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 3 YNSSKILFTTIMIIGTLITVTSNSWLGAWMGLEINLL-SFIPLLSDNNNlmSTEASLKYFLTQALASTVLLFS--SILLM 79
Cdd:PRK08668 96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFsSFMMVPMGKKE--SRKASLKYFVLSAIGAYAMLYAifLIYAK 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 80 LANNLNNEI-----NESFTSMIIMSALLL------KSGAAPFHFWFPN------------MMEGLTWMNALMLMTWQKIA 136
Cdd:PRK08668 174 TGTFDFADIsqgliNDTSTGFALIVFLFLlafgvaKAGIFPLHVWAPDayseapqsfsavLSGQLSKLGAYGFLLVLYVL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 137 PL--MLISYLNIKNLLLISVIL------SVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLIYFIFYSF-L 207
Cdd:PRK08668 254 PGtkLFSEFGTYRGVPLFNYILawlgniSIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFnH 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598323946 208 SFVLTFMFNIFKLFHLNQLFSWFVNSKILKFSLFMNF-------LSLGGLPPFLGFLPKWLVIQQLTMCNQYFLLTLMMM 280
Cdd:PRK08668 334 ALFKGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFamylvaiISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFF 413
|
330
....*....|....*...
gi 598323946 281 STLITLFFYLRICYSAFM 298
Cdd:PRK08668 414 GSIGSFLYVFRPLAGVFL 431
|
|
| |
