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Conserved domains on  [gi|1252316707|ref|YP_009433698|]
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cox1-i2 protein (mitochondrion) [Kluyveromyces marxianus DMKU3-1042]

Protein Classification

LAGLIDADG family homing endonuclease( domain architecture ID 10469810)

LAGLIDADG family homing endonuclease belongs to a large family of homing endonucleases that each contain one or two copies of a motif that resembles the consensus sequence LAGLIDADG and is directly involved in the DNA cutting process

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
179-265 2.39e-06

LAGLIDADG endonuclease;


:

Pssm-ID: 395767  Cd Length: 101  Bit Score: 45.70  E-value: 2.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1252316707 179 LAGLIDGDGYFGITSKK---------YPNCEITLDLKDEKTLRQIQNKFG-GSIKLRNGINAIRYRL-HNKEGMIKLINA 247
Cdd:pfam00961   1 LAGFIDGDGSFSINVTKsksykgyrvRLRFQISLHSKDENLLEKIKNYLGiGSISKRKNDNTVIYIIsNSKKSLNIIIPY 80

                          90
                  ....*....|....*...
gi 1252316707 248 VNGNIRNSKRLVQFNQVC 265
Cdd:pfam00961  81 FDKYPLLTSKYLDYLDFK 98
 
Name Accession Description Interval E-value
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
179-265 2.39e-06

LAGLIDADG endonuclease;


Pssm-ID: 395767  Cd Length: 101  Bit Score: 45.70  E-value: 2.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1252316707 179 LAGLIDGDGYFGITSKK---------YPNCEITLDLKDEKTLRQIQNKFG-GSIKLRNGINAIRYRL-HNKEGMIKLINA 247
Cdd:pfam00961   1 LAGFIDGDGSFSINVTKsksykgyrvRLRFQISLHSKDENLLEKIKNYLGiGSISKRKNDNTVIYIIsNSKKSLNIIIPY 80

                          90
                  ....*....|....*...
gi 1252316707 248 VNGNIRNSKRLVQFNQVC 265
Cdd:pfam00961  81 FDKYPLLTSKYLDYLDFK 98
 
Name Accession Description Interval E-value
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
179-265 2.39e-06

LAGLIDADG endonuclease;


Pssm-ID: 395767  Cd Length: 101  Bit Score: 45.70  E-value: 2.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1252316707 179 LAGLIDGDGYFGITSKK---------YPNCEITLDLKDEKTLRQIQNKFG-GSIKLRNGINAIRYRL-HNKEGMIKLINA 247
Cdd:pfam00961   1 LAGFIDGDGSFSINVTKsksykgyrvRLRFQISLHSKDENLLEKIKNYLGiGSISKRKNDNTVIYIIsNSKKSLNIIIPY 80

                          90
                  ....*....|....*...
gi 1252316707 248 VNGNIRNSKRLVQFNQVC 265
Cdd:pfam00961  81 FDKYPLLTSKYLDYLDFK 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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