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Conserved domains on  [gi|2328367042|ref|YP_010535400|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Amblyomma mixtum]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
1-115 9.31e-17

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 72.15  E-value: 9.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328367042   1 MKFFLMISVMLISMSHPMMMLIAVILLTLFISMLFYMITENSLFPLITILMILGGMMIIFMYIISLCPNKKMNFNFKISV 80
Cdd:MTH00166    5 MMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLI 84
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2328367042  81 IMFIFLFLNLNSMFVKIINQNLMKIYFFSFINMVI 115
Cdd:MTH00166   85 LFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSL 119
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
1-115 9.31e-17

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 72.15  E-value: 9.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328367042   1 MKFFLMISVMLISMSHPMMMLIAVILLTLFISMLFYMITENSLFPLITILMILGGMMIIFMYIISLCPNKKMNFNFKISV 80
Cdd:MTH00166    5 MMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLI 84
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2328367042  81 IMFIFLFLNLNSMFVKIINQNLMKIYFFSFINMVI 115
Cdd:MTH00166   85 LFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSL 119
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
1-115 9.31e-17

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 72.15  E-value: 9.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328367042   1 MKFFLMISVMLISMSHPMMMLIAVILLTLFISMLFYMITENSLFPLITILMILGGMMIIFMYIISLCPNKKMNFNFKISV 80
Cdd:MTH00166    5 MMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLI 84
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2328367042  81 IMFIFLFLNLNSMFVKIINQNLMKIYFFSFINMVI 115
Cdd:MTH00166   85 LFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSL 119
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
1-91 1.78e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 36.52  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328367042   1 MKFFLMISVMLISMSHPMMMLIAVILLTLFISMLFYMITeNSLFPLITILMILGGMMIIFMYIISLCPNKKMNFNFKISV 80
Cdd:MTH00212    7 LSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMES-NSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFFKKYFKG 85
                          90
                  ....*....|.
gi 2328367042  81 IMFIFLFLNLN 91
Cdd:MTH00212   86 FGMILISLNLY 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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