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Conserved domains on  [gi|47777293|ref|NP_001001296|]
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interferon alpha inducible protein 6 [Gallus gallus]

Protein Classification

interferon alpha-inducible IFI6/IFI27 family protein( domain architecture ID 10532989)

interferon alpha-inducible IFI6/IFI27 family protein similar to interferon alpha-inducible protein 6 and interferon alpha-inducible protein 27, which are probable adapter proteins involved in different biological processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ifi-6-16 pfam06140
Interferon-induced 6-16 family;
9-67 3.72e-05

Interferon-induced 6-16 family;


:

Pssm-ID: 461837 [Multi-domain]  Cd Length: 79  Bit Score: 38.82  E-value: 3.72e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 47777293     9 AGFTSSGIARGSLASSIMSGEAKSFGGGVPSGGTTATLQEMGAKGSTHSSGFTSSGISG 67
Cdd:pfam06140  18 AGFTAAGIAAGSLAASMMSAAAIANGGGVAAGSLVATLQSAGAAGLSTASNALLGSVGA 76
Ifi-6-16 super family cl05589
Interferon-induced 6-16 family;
59-102 5.17e-04

Interferon-induced 6-16 family;


The actual alignment was detected with superfamily member pfam06140:

Pssm-ID: 461837 [Multi-domain]  Cd Length: 79  Bit Score: 35.74  E-value: 5.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 47777293    59 GFTSSGISGGSRASQMMSNEATSCGGGVPKGGTTSTIQSISMGG 102
Cdd:pfam06140  19 GFTAAGIAAGSLAASMMSAAAIANGGGVAAGSLVATLQSAGAAG 62
 
Name Accession Description Interval E-value
Ifi-6-16 pfam06140
Interferon-induced 6-16 family;
9-67 3.72e-05

Interferon-induced 6-16 family;


Pssm-ID: 461837 [Multi-domain]  Cd Length: 79  Bit Score: 38.82  E-value: 3.72e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 47777293     9 AGFTSSGIARGSLASSIMSGEAKSFGGGVPSGGTTATLQEMGAKGSTHSSGFTSSGISG 67
Cdd:pfam06140  18 AGFTAAGIAAGSLAASMMSAAAIANGGGVAAGSLVATLQSAGAAGLSTASNALLGSVGA 76
Ifi-6-16 pfam06140
Interferon-induced 6-16 family;
59-102 5.17e-04

Interferon-induced 6-16 family;


Pssm-ID: 461837 [Multi-domain]  Cd Length: 79  Bit Score: 35.74  E-value: 5.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 47777293    59 GFTSSGISGGSRASQMMSNEATSCGGGVPKGGTTSTIQSISMGG 102
Cdd:pfam06140  19 GFTAAGIAAGSLAASMMSAAAIANGGGVAAGSLVATLQSAGAAG 62
 
Name Accession Description Interval E-value
Ifi-6-16 pfam06140
Interferon-induced 6-16 family;
9-67 3.72e-05

Interferon-induced 6-16 family;


Pssm-ID: 461837 [Multi-domain]  Cd Length: 79  Bit Score: 38.82  E-value: 3.72e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 47777293     9 AGFTSSGIARGSLASSIMSGEAKSFGGGVPSGGTTATLQEMGAKGSTHSSGFTSSGISG 67
Cdd:pfam06140  18 AGFTAAGIAAGSLAASMMSAAAIANGGGVAAGSLVATLQSAGAAGLSTASNALLGSVGA 76
Ifi-6-16 pfam06140
Interferon-induced 6-16 family;
59-102 5.17e-04

Interferon-induced 6-16 family;


Pssm-ID: 461837 [Multi-domain]  Cd Length: 79  Bit Score: 35.74  E-value: 5.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 47777293    59 GFTSSGISGGSRASQMMSNEATSCGGGVPKGGTTSTIQSISMGG 102
Cdd:pfam06140  19 GFTAAGIAAGSLAASMMSAAAIANGGGVAAGSLVATLQSAGAAG 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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