|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
169-486 |
3.95e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 3.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 169 EKMQLIDEEYEVLRH--RGDRWASVEAKLAEYRKEIQEQAQ--IELNAKLQHfmdveiakvKQEEKERSRKEILELRRDM 244
Cdd:COG1196 213 ERYRELKEELKELEAelLLLKLRELEAELEELEAELEELEAelEELEAELAE---------LEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 245 EKTyeLKSEALISREKNAIERLQKHQEIEEKDIYAQRQAVLREIESVRSREMELRQRMEAFDKSCALHEEKVKTMEDLLR 324
Cdd:COG1196 284 EEA--QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 325 RRElsvktmedsfeqKLKSELLKYQLELKEENMKRTEKLTENEERIRAEATRLQKEAAVIEAKTQDYERTSSEVKQLLME 404
Cdd:COG1196 362 EAE------------EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 405 LESSRSQASLLKQQKELLREQLEnmrdypELKKHTLELQTRISLLKQQLEEKQQHNQRLTQELSAPSHEHLMLQAELRRL 484
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEA------ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
..
gi 984290509 485 EA 486
Cdd:COG1196 504 EG 505
|
|
| LisH_2 |
pfam16045 |
LisH; |
69-96 |
2.26e-11 |
|
LisH;
Pssm-ID: 464992 Cd Length: 28 Bit Score: 59.01 E-value: 2.26e-11
10 20
....*....|....*....|....*...
gi 984290509 69 CNSVVVDHLRSAGYEYTLSVFQPECGLS 96
Cdd:pfam16045 1 LNSLIAEYLQSQGYNYTLSVFLPESGLA 28
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
221-486 |
1.48e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 1.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 221 EIAKVKQ--EEKERSRKEILELRRDMEKTYELKSEALISREKNAIERLQKH---------QEIEEKDIYAQRQAVLREIE 289
Cdd:TIGR02169 161 EIAGVAEfdRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAEryqallkekREYEGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 290 SVRSREMELRQRMEAFDKSCALHEEKVKTMEDLLRRRELSVKTMEDSFEQKLKSELLKYQLELkeENMKRTEKltENEER 369
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEI--ASLERSIA--EKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 370 IRAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELESSRSQASLLKQQKELLREQLENM-RDYPELKKHTLELQTRISL 448
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdKEFAETRDELKDYREKLEK 396
|
250 260 270
....*....|....*....|....*....|....*...
gi 984290509 449 LKQQLEEKQQHNQRLTQELSAPSHEHLMLQAELRRLEA 486
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
226-511 |
8.87e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 8.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 226 KQEEKERSRKEILELRRDMEKTYELKSEALISREKNAIERLQKHQEIEEKDIYAQRQAVLREIESVRSREMELRQRMEAF 305
Cdd:COG1196 207 RQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 306 DKSCALHEEKVKTMEDLLRRRELSvktmedsfEQKLKSELLKYQLELKEENmKRTEKLTENEERIRAEATRLQKEAAVIE 385
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEER--------RRELEERLEELEEELAELE-EELEELEEELEELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 386 AKTQDYERTSSEVKQLLMELEssRSQASLLKQQKELLREQLENMRDYPELKKHTLELQTRISLLKQQLEEKQQHNQRLTQ 465
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAE--EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 984290509 466 ELSAPSHEHLMLQAELRRLEAEHKLEKEELETQKNVLHTQLQHEVQ 511
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
176-485 |
2.09e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 176 EEYEVLRHRGDRwasVEAKLAEYRKEIQ----EQAQIE----LNAKLQHFMDVEIAKVKQ---EEKERSRKEILELRRDM 244
Cdd:TIGR02169 177 EELEEVEENIER---LDLIIDEKRQQLErlrrEREKAEryqaLLKEKREYEGYELLKEKEaleRQKEAIERQLASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 245 EKTYELKSEalISREKNAIERLQKHQEIEEKDIYAQRQ-AVLREIESVRSrEMELRQRMEAfdkscalheEKVKTMEDLL 323
Cdd:TIGR02169 254 EKLTEEISE--LEKRLEEIEQLLEELNKKIKDLGEEEQlRVKEKIGELEA-EIASLERSIA---------EKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 324 RRRelsVKTMEDSFEQKLKSELLKYQLE----LKEENMKRTEKLTENEERIRAEATRLQKEAAVIEAKTQDYERtssEVK 399
Cdd:TIGR02169 322 ERL---AKLEAEIDKLLAEIEELEREIEeerkRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---KLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 400 QLLMELESSRSQASLLKQQKELLREQLENMR-DYPELKKHTLELQTRISLLKQQLEEKQQHNQRLTQELSAPSHEHLMLQ 478
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNaAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
|
....*..
gi 984290509 479 AELRRLE 485
Cdd:TIGR02169 476 EEYDRVE 482
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
194-450 |
2.74e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 57.83 E-value: 2.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 194 KLAEYRKEIQEQAQIELNAKLQHFMDVEIAKVKQEEK-ERSRKEILELRRdmEKTYELKSEALISREKNAIERLQKHQE- 271
Cdd:pfam17380 354 RQEERKRELERIRQEEIAMEISRMRELERLQMERQQKnERVRQELEAARK--VKILEEERQRKIQQQKVEMEQIRAEQEe 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 272 IEEKDIYAQRQAVLREIESVRSREMELRQRMEAFDKscalHEEKVKTMEDLLRRRELSVKTMEDSFEQKLKSELLKYQLE 351
Cdd:pfam17380 432 ARQREVRRLEEERAREMERVRLEEQERQQQVERLRQ----QEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 352 LKEENMKRTEKLTENEERIRAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELESSRSQASLLKQQKELLREQLENmrd 431
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVES--- 584
|
250
....*....|....*....
gi 984290509 432 ypELKKHTLELQTRISLLK 450
Cdd:pfam17380 585 --EKARAEYEATTPITTIK 601
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
192-434 |
8.45e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 8.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 192 EAKLAEYRKEIQEQAQIELNAKLQHFMDVEIAKVKQEEKERSRKEILELRRDMEKTYELKSEALISREKNAIERLQKHQE 271
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 272 IEEK-DIYAQRQAVLREIESVRSREMELRQRMEAFDKScalHEEKVKTMEDLLRRRELSVKTMEDSFEQKLKSELLKYQL 350
Cdd:PTZ00121 1618 AKIKaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA---EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 351 ELKEENMKRTEKLTENEERIRAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELESSRSQASLLKQQKELLREQLENMR 430
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
....
gi 984290509 431 DYPE 434
Cdd:PTZ00121 1775 KEKE 1778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
228-587 |
9.56e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 9.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 228 EEKERSRKEILELRrDMEKTYE--LKSEALISREKNAIER-LQKHQEIEE--KDIYAQRQAVLREIESVRSREMELRQRM 302
Cdd:PRK03918 145 ESREKVVRQILGLD-DYENAYKnlGEVIKEIKRRIERLEKfIKRTENIEEliKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 303 EAFdkscalhEEKVKTMEDL------LRRRELSVKTMEDSFEQKLKS-----ELLKYQLELKEENMKRTEKLTENEE--- 368
Cdd:PRK03918 224 EKL-------EKEVKELEELkeeieeLEKELESLEGSKRKLEEKIREleeriEELKKEIEELEEKVKELKELKEKAEeyi 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 369 RIRAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELESSRSQASLLKQQKELLREQLENMRDYPELKKHTLELQTRISL 448
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 449 LKQQLEEKQQhnQRLTQELSAPSHEHLMLQAELRRLEAEHKLEKEELETQKNVLhTQLQHEVQQCALLKTQLMEcEERTK 528
Cdd:PRK03918 377 LKKRLTGLTP--EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI-EELKKAKGKCPVCGRELTE-EHRKE 452
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 529 WMNTHTEE-LKLQLQQTQQGPALRGPKSRTVAPEhdsdMVISALSRIRELEQEAERLEEA 587
Cdd:PRK03918 453 LLEEYTAElKRIEKELKEIEEKERKLRKELRELE----KVLKKESELIKLKELAEQLKEL 508
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
179-483 |
1.31e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 179 EVLRHRGDRWASVEAKLAEYRKEIQEQAQIELNAKLQHFMDVEIAKVKQEEKERSRK-----EILELRRDMEKTYELKSE 253
Cdd:PTZ00121 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEernneEIRKFEEARMAHFARRQA 1270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 254 ALISREKNAIERLQKHQEIEEKDiYAQRQAVLREIESVRSREMELRQRMEAFDKScalhEEKVKTMEDLLRRRELSVKTM 333
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKAD-EAKKAEEKKKADEAKKKAEEAKKADEAKKKA----EEAKKKADAAKKKAEEAKKAA 1345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 334 EdsfEQKLKSELLKYQLELKEENMKRTEKLTEnEERIRAEATRLQKEAaviEAKTQDYERTSSEVKQLLMELESSRSQas 413
Cdd:PTZ00121 1346 E---AAKAEAEAAADEAEAAEEKAEAAEKKKE-EAKKKADAAKKKAEE---KKKADEAKKKAEEDKKKADELKKAAAA-- 1416
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 414 llKQQKELLREQLENMRDYPELKKHTlELQTRISLLKQQLEEKQQHNQRLTQELSAPSHEHLMLQAELRR 483
Cdd:PTZ00121 1417 --KKKADEAKKKAEEKKKADEAKKKA-EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
199-466 |
1.33e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 199 RKEIQEQAQIELNAKLQHFMDVEIAKVKQEEKERSrKEILELRRDMEKTYELKSEAlisREKNAIERLQKHQEIEEKDIY 278
Cdd:PTZ00121 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA-DEAKKKAEEAKKAEEAKKKA---EEAKKADEAKKKAEEAKKADE 1487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 279 AQRQAvlreiESVRSREMELRQRMEAFDKSCALHEEKVKTMEDLLRRRELSVKTME-DSFEQKLKSELLKYQLELK--EE 355
Cdd:PTZ00121 1488 AKKKA-----EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEaKKAEEKKKADELKKAEELKkaEE 1562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 356 NMKRTEKLTENEERI----RAEATRlQKEAAVIEAKTQDYERTSSEVKQLLMELESSRSQASLLKQQKE-------LLRE 424
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKNmalrKAEEAK-KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEekkkveqLKKK 1641
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 984290509 425 QLENMRDYPELKKHTLELQTRISLLKQQLEEKQQHNQRLTQE 466
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
250-528 |
1.73e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 250 LKSEALISREKNAIERLQKHQEiEEKDIYAQRQAVLREIESVRSREMELRQRMEAFDKScalHEEKVKTMEDLLRRRELS 329
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLRE-RLEGLKRELSSLQSELRRIENRLDELSQELSDASRK---IGEIEKEIEQLEQEEEKL 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 330 VKTMEDSFE--QKLKSELLKYQLELKEENMK---RTEKLTENEERIRA-EATRLQKEAAVIEAKTQDYERTSSEVKQLLM 403
Cdd:TIGR02169 736 KERLEELEEdlSSLEQEIENVKSELKELEARieeLEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 404 ELESSRSQASLLKQQKELLREQLENMRDYPELKKHTLE-----LQTRISLLKQQLEEKQQHNQRLTQELSAPSHEHLMLQ 478
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEkeienLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 984290509 479 AELRRLEaehklekeeleTQKNVLHTQLQHEVQQCALLKTQLMECEERTK 528
Cdd:TIGR02169 896 AQLRELE-----------RKIEELEAQIEKKRKRLSELKAKLEALEEELS 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
234-526 |
3.07e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 3.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 234 RKEILELRRDMEKTYELKSEAlisrEKNAIERLQKHQEIEEkdiyaqrqavlrEIESVRSREMELRQRMEAFDKSCALHE 313
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAEL----EKALAELRKELEELEE------------ELEQLRKELEELSRQISALRKDLARLE 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 314 EKVKTMEDLLRRRELSVKTMEDSfEQKLKSELLKYQLELKEenmkRTEKLTENEERIRAEATRLQKEAAVIEAKTQDYER 393
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAE-IEELEERLEEAEEELAE----AEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 394 TSSEVKQLLMELESSRSQASL-------LKQQKELLREQLEnmrdypELKKHTLELQTRISLLKQQLEEKQQHNQRLTQE 466
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIAAterrledLEEQIEELSEDIE------SLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 467 LSAPSHEHLMLQAELRRLEaehkLEKEELETQKNVLHTQLQHEVQQCALLKTQLMECEER 526
Cdd:TIGR02168 889 LALLRSELEELSEELRELE----SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
189-586 |
4.36e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 4.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 189 ASVEAKLAEYRKEIQEQAQIELNAKLQHFMDVEIAKVKQEEKERSRKEILELRRDMEKTYELKSEALISRE----KNAIE 264
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadeaKKKAE 1441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 265 RLQKHQEIEEKDIYAQRQAVLREIESVRSREMELRQRMEAFDKSCALHE--EKVKTMEDLLRRRELSVKTMED---SFEQ 339
Cdd:PTZ00121 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKkaEEAKKKADEAKKAAEAKKKADEakkAEEA 1521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 340 KLKSELLKYQLELKEENMKRTEKLTENEERIRAEATRLQKEAAVIEAKTQDYERTSSEVK--QLLMELESSRSQASLL-- 415
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKly 1601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 416 ----KQQKELLREQLENMRDYPELKKHTLELQTRISLLKQQLEEKQQHNQ-RLTQELSAPSHEHLMLQAELRRLEAEHKL 490
Cdd:PTZ00121 1602 eeekKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEElKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 491 EKEELETQKNVLHTQLQHEVQQCALLKTQLMECEERTKWMNTHTEELKLQLQQTQQGPALRGPKSRTVAPEHDSDMVISA 570
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
410
....*....|....*.
gi 984290509 571 LSRIRELEQEAERLEE 586
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEK 1777
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
160-464 |
6.44e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 6.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 160 IAAHKESLVEKMQLIDEEYEVLRHRGDRWASVEAKLAEY--RKEIQEQAQIELNAKLQHFMDVEiAKVKQEEK--ERSRK 235
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELeeLKEEIEELEKELESLEGSKRKLE-EKIRELEEriEELKK 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 236 EILELRRDMEKTYELKSEALISREKNAI--ERLQKHQEIE-EKDIYAQR----QAVLREIESVRSREMELRQRMEAFDKS 308
Cdd:PRK03918 274 EIEELEEKVKELKELKEKAEEYIKLSEFyeEYLDELREIEkRLSRLEEEingiEERIKELEEKEERLEELKKKLKELEKR 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 309 CALHEEKVKTMEDLLR--------RRELSVKTMEDsFEQKLKsELLKYQLELKEENMKRTEKLTENEERI---------- 370
Cdd:PRK03918 354 LEELEERHELYEEAKAkkeelerlKKRLTGLTPEK-LEKELE-ELEKAKEEIEEEISKITARIGELKKEIkelkkaieel 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 371 --------------------------RAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELESSRSQASLLKQQKEL--- 421
Cdd:PRK03918 432 kkakgkcpvcgrelteehrkelleeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELeek 511
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 984290509 422 -----LREQLENMRDYPELKKHTLELQTRISLLKQQLEEKQQHNQRLT 464
Cdd:PRK03918 512 lkkynLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
192-520 |
8.15e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 8.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 192 EAKLAEYRKEIQEQ---AQIELNAKLQHFMDVEIAKVkQEEKERSRKEILELRRDMEKtyelkSEALISREKNAIERLQK 268
Cdd:TIGR02168 208 QAEKAERYKELKAElreLELALLVLRLEELREELEEL-QEELKEAEEELEELTAELQE-----LEEKLEELRLEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 269 HQEIEEKDIYAQRQavlrEIESVRSREMELRQRMEAfdkscaLHEEKVKTMEDLlrrrelsvktmedsfeQKLKSELLKY 348
Cdd:TIGR02168 282 EIEELQKELYALAN----EISRLEQQKQILRERLAN------LERQLEELEAQL----------------EELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 349 QLELKEenmkrtekLTENEERIRAEATRLQKEAAVIEAKTQDYERTSSEVKQllmELESSRSQASLLKQQKELLREQLEN 428
Cdd:TIGR02168 336 AEELAE--------LEEKLEELKEELESLEAELEELEAELEELESRLEELEE---QLETLRSKVAQLELQIASLNNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 429 MRDYPE-LKKHTLELQTRISLLKQQLEEKQQhnQRLTQELSAPSHEHLMLQAELRRLEAEHKLEKEELETQKNVLHT--- 504
Cdd:TIGR02168 405 LEARLErLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAaer 482
|
330
....*....|....*.
gi 984290509 505 QLQHEVQQCALLKTQL 520
Cdd:TIGR02168 483 ELAQLQARLDSLERLQ 498
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
221-430 |
1.62e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 221 EIAKVKQEEKERSRKEILELRRDMEKTyeLKSEALISREKNAIERLQKHQEIEEKDIYAQRQAVLREIESVRSREMELRQ 300
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAAL--KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 301 RMEAFDKSCAlheEKVKTMEDLLRRRELSVKTMEDSFEQKLKS-----ELLKYQLELKEENMKRTEKLTENEERIRAEAT 375
Cdd:COG4942 98 ELEAQKEELA---ELLRALYRLGRQPPLALLLSPEDFLDAVRRlqylkYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 984290509 376 RLQKEAAVIEAKTQDYERTSSEVKQLLMELESS----RSQASLLKQQKELLREQLENMR 430
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKElaelAAELAELQQEAEELEALIARLE 233
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
160-382 |
5.79e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 5.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 160 IAAHKESLVEKMQLIDEEYEVLRHRGDRWASVEAKLAEYRKEIQEQAQIELNAKLQhfmdVEIAKVKQEEKERSRKEILE 239
Cdd:COG1196 283 LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE----LEELEEELEEAEEELEEAEA 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 240 LRRDMEKTYELKSEALISREKNAIERLQKHQEIEEKDiyAQRQAVLREIESVRSREMELRQRMEAFDKSCALHEEKVKTM 319
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA--AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984290509 320 EDLLRRRELSVKTMEDSFEQKLKSELLKYQLELKEENMKRTEKLTENEERIRAEATRLQKEAA 382
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
189-380 |
8.21e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 8.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 189 ASVEAKLAEYR-KEIQEQAQIELNAKlqhfmdveiakvKQEEKERSRKEILELRRDMEKTYELKSEALISREKnaieRLQ 267
Cdd:PRK12704 29 AEAKIKEAEEEaKRILEEAKKEAEAI------------KKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK----RLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 268 KHQEIEEKdiyaQRQAVLREIESVRSREMELRQRMEAFDKSCALHEEKVKTMEDLLRRreLSVKTMEDSfeqklKSELLK 347
Cdd:PRK12704 93 QKEENLDR----KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER--ISGLTAEEA-----KEILLE 161
|
170 180 190
....*....|....*....|....*....|....*
gi 984290509 348 yQL--ELKEENMKRtekLTENEERIRAEATRLQKE 380
Cdd:PRK12704 162 -KVeeEARHEAAVL---IKEIEEEAKEEADKKAKE 192
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
183-434 |
1.79e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 183 HRGDRWASVEAKLAEYRKEIQEQAQIELNAKLQHfmdVEIAKVKQEEKERSR-KEILELRRDME---------------K 246
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKEL---RELEKVLKKESELIKlKELAEQLKELEeklkkynleelekkaE 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 247 TYELKSEALISREKNaIERLQKHQEiEEKDIYAQRQAVLREIESVRSREMELRQRMEAFDKSCALH-EEKVKTMEDLLRR 325
Cdd:PRK03918 526 EYEKLKEKLIKLKGE-IKSLKKELE-KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEElEERLKELEPFYNE 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 326 ReLSVKTMEDSFEQKLKS-ELLKYQLELKEENMKRTEKlteNEERIRAEATRLQKEAAV--IEAKTQDYERTSSEVKQLL 402
Cdd:PRK03918 604 Y-LELKDAEKELEREEKElKKLEEELDKAFEELAETEK---RLEELRKELEELEKKYSEeeYEELREEYLELSRELAGLR 679
|
250 260 270
....*....|....*....|....*....|..
gi 984290509 403 MELESSRSQASLLKQQKELLREQLENMRDYPE 434
Cdd:PRK03918 680 AELEELEKRREEIKKTLEKLKEELEEREKAKK 711
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
165-486 |
2.88e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 165 ESLVEKMQLIDEEYEVLRhrgDRWASVEAKLAEYRKEIQEQAQIELNAKLQHFMDVEIAKVKQEEKERSRKEI-LELRRD 243
Cdd:PRK03918 334 EEKEERLEELKKKLKELE---KRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIeEEISKI 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 244 MEKTYELKSEalISREKNAIERLQKHQ--------EIEEKDIYAQRQAVLREIESVRSREMELRQRMEAfdkscaLHEEK 315
Cdd:PRK03918 411 TARIGELKKE--IKELKKAIEELKKAKgkcpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERK------LRKEL 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 316 VKTMEDLLRRRELSV-KTMEDSFEQkLKSELLKYQLELKEENMKRTEKLTENEERIRAEATRLQKEAAvieaKTQDYERT 394
Cdd:PRK03918 483 RELEKVLKKESELIKlKELAEQLKE-LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE----KLEELKKK 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 395 SSEVKQLLMELESSRsqASLLKQQKEL-----------LREQLENMRDYPELKKHTLELQTR-----------------I 446
Cdd:PRK03918 558 LAELEKKLDELEEEL--AELLKELEELgfesveeleerLKELEPFYNEYLELKDAEKELEREekelkkleeeldkafeeL 635
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 984290509 447 SLLKQQLEEKQQHNQRLTQELSAPSHE-----HLMLQAELRRLEA 486
Cdd:PRK03918 636 AETEKRLEELRKELEELEKKYSEEEYEelreeYLELSRELAGLRA 680
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
191-455 |
5.13e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 5.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 191 VEAKLAEYRKEIQEQAQIELNAKLQHfMDVEIAKVKQ-----EEKERSRKEILELRRDMEKTYELKSEAlISREKNAIER 265
Cdd:PRK02224 185 QRGSLDQLKAQIEEKEEKDLHERLNG-LESELAELDEeieryEEQREQARETRDEADEVLEEHEERREE-LETLEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 266 LQKHQEIEEKDiyaqRQAVLREIESVRSREMELRQRMEAFDKSCALHEEKVKTMEDllRRRELSVKtmedsfEQKLKSEL 345
Cdd:PRK02224 263 LRETIAETERE----REELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEA--RREELEDR------DEELRDRL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 346 LKYQLELKEENmKRTEKLTENEERIRAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELEssrSQASLLKQQKELLREQ 425
Cdd:PRK02224 331 EECRVAAQAHN-EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELE---EEIEELRERFGDAPVD 406
|
250 260 270
....*....|....*....|....*....|.
gi 984290509 426 LENMRDYPELKKHTL-ELQTRISLLKQQLEE 455
Cdd:PRK02224 407 LGNAEDFLEELREERdELREREAELEATLRT 437
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
191-528 |
5.43e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.79 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 191 VEAKLAEYRKEIQEQAQIELNAKLQHFMDVEIAKVKQEEKE--------RSRKEILELRRDMEKTYELKSEALISREKNA 262
Cdd:COG5185 156 VETGIIKDIFGKLTQELNQNLKKLEIFGLTLGLLKGISELKkaepsgtvNSIKESETGNLGSESTLLEKAKEIINIEEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 263 IERLQKHQEIEEKDIYAQRQA-VLREIESVR------SREMELR---QRMEAFDKSCALHEEKVKTMEDLLRRRELSVK- 331
Cdd:COG5185 236 KGFQDPESELEDLAQTSDKLEkLVEQNTDLRleklgeNAESSKRlneNANNLIKQFENTKEKIAEYTKSIDIKKATESLe 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 332 ------TMEDSFEQKlKSELLKYQLELKEENMKRTEKLTENEERIRAEATRLQKEaavieaktQDYERTSSEVKQLLMEL 405
Cdd:COG5185 316 eqlaaaEAEQELEES-KRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGE--------VELSKSSEELDSFKDTI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 406 ESSR-SQASLLKQQKELLREQLENMRD-YPELKKHTLELQTRISLLKQQLEEKQQHNQRLTQELSAPshEHLMLQAELRR 483
Cdd:COG5185 387 ESTKeSLDEIPQNQRGYAQEILATLEDtLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKV--MREADEESQSR 464
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 984290509 484 LEAEHKLEKEELETQKNVLHTQLQHEVQQCALLKTQLMECEERTK 528
Cdd:COG5185 465 LEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLE 509
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
162-408 |
5.49e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 5.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 162 AHKESLVEKMQLIDEEYEVLRHRGDRWASVEAKLAEYRKEIQEQAQIELNAKLQHFMDVEIAKVKQEEKERSRKEILELR 241
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 242 RDME---KTYELKSEAliSREKNAIERLQKhqEIEEKdiyaqrqavlREIESVRSREMELRQRMEAFDKScalHEEKVKT 318
Cdd:PTZ00121 1669 KAEEdkkKAEEAKKAE--EDEKKAAEALKK--EAEEA----------KKAEELKKKEAEEKKKAEELKKA---EEENKIK 1731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 319 MEDLLRRRElsvktmedsfEQKLKSELLKyqlelKEENMKRTEKLTENEERIRAEATRLQKEAAVIEAKTQDYERTSSEV 398
Cdd:PTZ00121 1732 AEEAKKEAE----------EDKKKAEEAK-----KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
250
....*....|
gi 984290509 399 KQLLMELESS 408
Cdd:PTZ00121 1797 DKKIKDIFDN 1806
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
198-522 |
5.75e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.91 E-value: 5.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 198 YRKEIQEQAQ-IELNAKLQHFMDVEiAKVKQEEKERSRKEILELRRDMEKTYELKS-EALISREKNAIERLQKHQEIEEK 275
Cdd:COG5022 760 LRRRYLQALKrIKKIQVIQHGFRLR-RLVDYELKWRLFIKLQPLLSLLGSRKEYRSyLACIIKLQKTIKREKKLRETEEV 838
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 276 dIYAQRQAVLREiESVRSREMELRQRMEAFDKSCALHEEKVKTMEDLLRRRELSVKTMEDSFEQ--KLKSELLKYQLELK 353
Cdd:COG5022 839 -EFSLKAEVLIQ-KFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVnlELESEIIELKKSLS 916
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 354 EENMKRTEKLTENEerirAEATRLQKEAAVIEAKTQDYERTSsEVKQLLMELESSRSQA----SLLKQQKELLRE---QL 426
Cdd:COG5022 917 SDLIENLEFKTELI----ARLKKLLNNIDLEEGPSIEYVKLP-ELNKLHEVESKLKETSeeyeDLLKKSTILVREgnkAN 991
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 427 ENMRDYPELKKHTLELQTRISLLKQQLEEKQQHNQRLTQELSAPSHEHLMLQAELRRLEAEHKLEKEELETQKNVLHTQL 506
Cdd:COG5022 992 SELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKL 1071
|
330
....*....|....*.
gi 984290509 507 QHEVQQCALLKTQLME 522
Cdd:COG5022 1072 RRENSLLDDKQLYQLE 1087
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
192-486 |
6.51e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 6.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 192 EAKLAEYRKEIQEQAQIELNAKLQHFMDVEIAKVKQEEKERSRKEileLRRDMEktyELKSEALISREKNAiERLQKHQE 271
Cdd:pfam07888 33 QNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRE---LESRVA---ELKEELRQSREKHE-ELEEKYKE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 272 IEE--KDIYAQRQAVLREIESVRSREMELRQRMEAFDKSCALHEEKVKTMEDLLRRRELSVKTMEDSFEQkLKSELLKYQ 349
Cdd:pfam07888 106 LSAssEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQ-LQAKLQQTE 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 350 LELKEENMKRTEKLTENEERIrAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELESSRSQASLLKQQKELLREQLENM 429
Cdd:pfam07888 185 EELRSLSKEFQELRNSLAQRD-TQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSM 263
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984290509 430 -----RDYPELKKHTLEL-QTRISLLKQQLEEK------QQHNQRLTQELSAPSHEHLMLQAELRRLEA 486
Cdd:pfam07888 264 aaqrdRTQAELHQARLQAaQLTLQLADASLALRegrarwAQERETLQQSAEADKDRIEKLSAELQRLEE 332
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
164-485 |
9.76e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 164 KESLVEKMQLIDEEYEVLRHRGDRWASVEAKLAEYRKEIqEQAQIELNAKLQHFMDVEIAKVKQ--EEKERSRKEILELR 241
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAEL-AELQEELEELLEQLSLATEEELQDlaEELEELQQRLAELE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 242 RDMEKTYELKSEAL--ISREKNAIERLQKHQEIEEKDIYAQRQAVLREIESVRSREMELRQRMEA--------------- 304
Cdd:COG4717 213 EELEEAQEELEELEeeLEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllallfll 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 305 FDKSCALHEEKVKTMEDLLRRRELSVKTMED-----SFEQKLKSELLKYQLELKEENMKRTEKLTENEERIRAEATRLQK 379
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEEllaalGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 380 EAAVIEAKTQDYE--RTSSEVKQLLMELESSRSQASLLKQQKELLREQLENMRDYPELKKHTLELQTRISLLKQQLEEKQ 457
Cdd:COG4717 373 AALLAEAGVEDEEelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELR 452
|
330 340 350
....*....|....*....|....*....|....*..
gi 984290509 458 QHNQRLTQELSAPS---------HEHLMLQAELRRLE 485
Cdd:COG4717 453 EELAELEAELEQLEedgelaellQELEELKAELRELA 489
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
279-486 |
1.57e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 279 AQRQAVLREIESVRSREMELRQRMEAFDKSCALHEEKVKTMEDLLRRRELSVKTMEDSFE--QKLKSELLKYQLELKEEN 356
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAelEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 357 MKRTEKLTENEERIRAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELESSRSQASLLKQQKELLREQLENMRDypelk 436
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA----- 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 984290509 437 khtlELQTRISLLKQQLEEKQQHNQRLTQELSAPSHEHLMLQAELRRLEA 486
Cdd:COG4942 182 ----ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
186-380 |
2.65e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 186 DRWASVEAKLAEYRKEIQEQAQIELNAKLQHFMDVEIAKVKQEE---------KERSRKEILELRRDMEKTYELKSEALI 256
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllneeaaNLRERLESLERRIAATERRLEDLEEQI 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 257 SREKNAIERLQK---HQEIEEKDIYAQRQAVLREIESVRSREMELRQRMEAFDKSCALHEEKVKTMEDLLRRRELSVKTM 333
Cdd:TIGR02168 848 EELSEDIESLAAeieELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 984290509 334 EDSfEQKLKSELL--------KYQLELkEENMKRTEKLTENEERIRAEATRLQKE 380
Cdd:TIGR02168 928 ELR-LEGLEVRIDnlqerlseEYSLTL-EEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
286-526 |
2.78e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 286 REIESVRSREMELRQRMEAFDkscALHEEKVKTMEDLLRRRELSVKTmedsfeQKLKSELLKYQLELKeenMKRTEKLTE 365
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLD---LIIDEKRQQLERLRREREKAERY------QALLKEKREYEGYEL---LKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 366 NEERIRAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELEssrsqaslLKQQKELLREQLENMRDYPELKKHTLELQTR 445
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN--------KKIKDLGEEEQLRVKEKIGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 446 ISLLKQQLEEKQQHNQRLTQELSAPSHEHLML---QAELRRLEAEHKLEKEELETQKNVLHTQLQHEVQQCALLKTQLME 522
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELereIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
....
gi 984290509 523 CEER 526
Cdd:TIGR02169 390 YREK 393
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
195-454 |
5.19e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 195 LAEYRKEIQEQAQiELNakLQHFMD--VEIAKVKQEEKERSRKEILE----LRRDMEKtYELKSEALISREKNAIERLQK 268
Cdd:PRK05771 14 LKSYKDEVLEALH-ELG--VVHIEDlkEELSNERLRKLRSLLTKLSEaldkLRSYLPK-LNPLREEKKKVSVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 269 HQEIEEKDIYAQRQAVLREIESVRSREMELRQRMEAFDKSCALHEEkvktMEDLLRRRELSVKTM---EDSFEQKLKSEL 345
Cdd:PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLD----LSLLLGFKYVSVFVGtvpEDKLEELKLESD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 346 LKYQLELKEENMKRTEKLTeNEERIRAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELESsrsqaslLKQQKELLREQ 425
Cdd:PRK05771 166 VENVEYISTDKGYVYVVVV-VLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEE-------IEKERESLLEE 237
|
250 260 270
....*....|....*....|....*....|
gi 984290509 426 LENMRD-YPELKKHTLELqtrISLLKQQLE 454
Cdd:PRK05771 238 LKELAKkYLEELLALYEY---LEIELERAE 264
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
177-369 |
6.72e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 177 EYEVLRHRGDRWASVEAKLAEYRKEIQEQAQIELNAKLQHFMDVEIAKVKQEEKERSRKeiLELRRDMEKTYELKSEALI 256
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQ--VERLRQQEEERKRKKLELE 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 257 SREKNAIERLQKHQEIEEKDIYAQRQAVlreIESVRSREMeLRQRMEafDKSCALHEEKVKTMEDLLRRRELSVKTMEDS 336
Cdd:pfam17380 481 KEKRDRKRAEEQRRKILEKELEERKQAM---IEEERKRKL-LEKEME--ERQKAIYEEERRREAEEERRKQQEMEERRRI 554
|
170 180 190
....*....|....*....|....*....|...
gi 984290509 337 FEQKLKSELLKYQLELKEENMKRTEKLTENEER 369
Cdd:pfam17380 555 QEQMRKATEERSRLEAMEREREMMRQIVESEKA 587
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
342-456 |
7.19e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 342 KSELLKYQLELKEENMKRTEKLTENEERIRAEATRLQKEAAVIEAKTQDYERTSSEVKQLLMELESSRSQASLL--KQQK 419
Cdd:PRK12704 63 KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELieEQLQ 142
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 984290509 420 ELLR-----------EQLENMRDypelkkhtlELQTRISLLKQQLEEK 456
Cdd:PRK12704 143 ELERisgltaeeakeILLEKVEE---------EARHEAAVLIKEIEEE 181
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
165-363 |
9.17e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.66 E-value: 9.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 165 ESLVEKMQLIDEEYEVLRHRGDRWASVEAKLAEYRKEIQ--EQAQIELNAKLQHFMDVEIAKVKQEEKE----------- 231
Cdd:PRK03918 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDelEEELAELLKELEELGFESVEELEERLKElepfyneylel 607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984290509 232 ---RSRKEILELRRDMEKTYELKSEALISREKNAIERL--------QKHQEIEEKDIYAQRQAVLREIESVRSREMELRQ 300
Cdd:PRK03918 608 kdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELrkeleeleKKYSEEEYEELREEYLELSRELAGLRAELEELEK 687
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984290509 301 RMEAFDKSCALHEEKVKTMEDLLRRRELSVKTMEDSfeQKLKSELLKYQLELKEENMKRTEKL 363
Cdd:PRK03918 688 RREEIKKTLEKLKEELEEREKAKKELEKLEKALERV--EELREKVKKYKALLKERALSKVGEI 748
|
|
| |
