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Conserved domains on  [gi|299782601|ref|NP_001010847|]
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leucine-rich repeat-containing protein 38 precursor [Homo sapiens]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 12183770)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions; similar to Homo sapiens leucine-rich repeat-containing protein 38 that is auxiliary protein of the large-conductance, voltage and calcium-activated potassium channel (BK alpha)

Gene Ontology:  GO:0005515
PubMed:  14747988|11751054

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
58-116 2.31e-10

Leucine rich repeat;


:

Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 55.22  E-value: 2.31e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 299782601   58 VRKLLVAGNRIQRIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNL 116
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
109-164 6.38e-10

Leucine rich repeat;


:

Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 54.07  E-value: 6.38e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 299782601  109 LDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNL 164
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRRCT super family cl47026
Leucine rich repeat C-terminal domain;
186-237 6.50e-04

Leucine rich repeat C-terminal domain;


The actual alignment was detected with superfamily member smart00082:

Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 37.02  E-value: 6.50e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 299782601   186 NPWLCDCDFAHLFSWIQENASKLPKglDEIQCSLPmESRRISLRELSEASFS 237
Cdd:smart00082   1 NPFICDCELRWLLRWLQANEHLQDP--VDLRCASP-SSLRGPLLELLHSEFK 49
LRRNT smart00013
Leucine rich repeat N-terminal domain;
27-58 1.45e-03

Leucine rich repeat N-terminal domain;


:

Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 35.37  E-value: 1.45e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 299782601    27 ACPAGCACTDPHtVDCRDRGLPSVPDPFPLDV 58
Cdd:smart00013   1 ACPAPCNCSGTA-VDCSGRGLTEVPLDLPPDT 31
 
Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
58-116 2.31e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 55.22  E-value: 2.31e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 299782601   58 VRKLLVAGNRIQRIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNL 116
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
109-164 6.38e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 54.07  E-value: 6.38e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 299782601  109 LDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNL 164
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
57-164 2.93e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 57.25  E-value: 2.93e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  57 DVRKLLVAGNRIQRIPEDFFIFyGDLVYLDFRNNSLRSLEEgTFSGSAKLVFLDLSYNNLTQLGAgAFRSAGRLVKLSLA 136
Cdd:COG4886  114 NLESLDLSGNQLTDLPEELANL-TNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLTDLPE-ELGNLTNLKELDLS 190

                         90       100
                 ....*....|....*....|....*...
gi 299782601 137 NNNLVGVHEdAFETLESLQVLELNDNNL 164
Cdd:COG4886  191 NNQITDLPE-PLGNLTNLEELDLSGNQL 217
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 45-165 8.91e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 43.50  E-value: 8.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  45 RGLPSVPdpfpLDVRKLLVAGNRI-----QRIPEDFfIFYGDLVYLDFRNNSL-----RSLEEGtFSGSAKLVFLDLSYN 114
Cdd:cd00116  130 KGLKDLP----PALEKLVLGRNRLegascEALAKAL-RANRDLKELNLANNGIgdagiRALAEG-LKANCNLEVLDLNNN 203

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 299782601 115 NLTQLGAGAFrsagrlvklslannnlvgvhEDAFETLESLQVLELNDNNLR 165
Cdd:cd00116  204 GLTDEGASAL--------------------AETLASLKSLEVLNLGDNNLT 234
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
42-165 9.11e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 43.92  E-value: 9.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  42 CRDR-GLPSVPDPFPLDVRKLLVAGNRIQRIPEDffiFYGDLVYLDFRNNSLRSLEEgTFSGSAKLvfLDLSYNNLTQLG 120
Cdd:PRK15370 184 RLKIlGLTTIPACIPEQITTLILDNNELKSLPEN---LQGNIKTLYANSNQLTSIPA-TLPDTIQE--MELSINRITELP 257

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 299782601 121 AgafRSAGRLVKLSLANNNLVGVHedafETL-ESLQVLELNDNNLR 165
Cdd:PRK15370 258 E---RLPSALQSLDLFHNKISCLP----ENLpEELRYLSVYDNSIR 296
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 82-164 1.03e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 43.11  E-value: 1.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  82 LVYLDFRNNSLRSLE----EGTFSGSAKLVFLDLSYNNLTQLGAGAFRSA-----GRLVKLSLANNNLVgvhEDAFETL- 151
Cdd:cd00116  195 LEVLDLNNNGLTDEGasalAETLASLKSLEVLNLGDNNLTDAGAAALASAllspnISLLTLSLSCNDIT---DDGAKDLa 271

                         90
                 ....*....|....*....
gi 299782601 152 ------ESLQVLELNDNNL 164
Cdd:cd00116  272 evlaekESLLELDLRGNKF 290
LRRCT smart00082
Leucine rich repeat C-terminal domain;
186-237 6.50e-04

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 37.02  E-value: 6.50e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 299782601   186 NPWLCDCDFAHLFSWIQENASKLPKglDEIQCSLPmESRRISLRELSEASFS 237
Cdd:smart00082   1 NPFICDCELRWLLRWLQANEHLQDP--VDLRCASP-SSLRGPLLELLHSEFK 49
LRRNT smart00013
Leucine rich repeat N-terminal domain;
27-58 1.45e-03

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 35.37  E-value: 1.45e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 299782601    27 ACPAGCACTDPHtVDCRDRGLPSVPDPFPLDV 58
Cdd:smart00013   1 ACPAPCNCSGTA-VDCSGRGLTEVPLDLPPDT 31
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 88-164 1.55e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 40.22  E-value: 1.55e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 299782601  88 RNNSLRSLEEgtFSGSAKLVFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNL 164
Cdd:PLN00113 461 RNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535
LRRNT pfam01462
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 27-55 2.28e-03

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 396168 [Multi-domain]  Cd Length: 28  Bit Score: 34.91  E-value: 2.28e-03
                          10        20
                  ....*....|....*....|....*....
gi 299782601   27 ACPAGCACTDPHtVDCRDRGLPSVPDPFP 55
Cdd:pfam01462   1 ACPVPCHCSATV-VNCSDRGLTAVPRDLP 28
 
Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
58-116 2.31e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 55.22  E-value: 2.31e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 299782601   58 VRKLLVAGNRIQRIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNL 116
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
109-164 6.38e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 54.07  E-value: 6.38e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 299782601  109 LDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNL 164
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
57-164 2.93e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 57.25  E-value: 2.93e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  57 DVRKLLVAGNRIQRIPEDFFIFyGDLVYLDFRNNSLRSLEEgTFSGSAKLVFLDLSYNNLTQLGAgAFRSAGRLVKLSLA 136
Cdd:COG4886  114 NLESLDLSGNQLTDLPEELANL-TNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLTDLPE-ELGNLTNLKELDLS 190

                         90       100
                 ....*....|....*....|....*...
gi 299782601 137 NNNLVGVHEdAFETLESLQVLELNDNNL 164
Cdd:COG4886  191 NNQITDLPE-PLGNLTNLEELDLSGNQL 217
LRR_8 pfam13855
Leucine rich repeat;
82-140 3.75e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 52.14  E-value: 3.75e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 299782601   82 LVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNL 140
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
39-164 9.56e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 55.71  E-value: 9.56e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  39 TVDCRDRGLPSVPDPF-PLD-VRKLLVAGNRIQRIPEDFfifyGD---LVYLDFRNNSLRSLEEgTFSGSAKLVFLDLSY 113
Cdd:COG4886  163 SLDLSNNQLTDLPEELgNLTnLKELDLSNNQITDLPEPL----GNltnLEELDLSGNQLTDLPE-PLANLTNLETLDLSN 237

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 299782601 114 NNLTQLGAgaFRSAGRLVKLSLANNNLVGVHEDAfeTLESLQVLELNDNNL 164
Cdd:COG4886  238 NQLTDLPE--LGNLTNLEELDLSNNQLTDLPPLA--NLTNLKTLDLSNNQL 284
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 45-165 8.91e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 43.50  E-value: 8.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  45 RGLPSVPdpfpLDVRKLLVAGNRI-----QRIPEDFfIFYGDLVYLDFRNNSL-----RSLEEGtFSGSAKLVFLDLSYN 114
Cdd:cd00116  130 KGLKDLP----PALEKLVLGRNRLegascEALAKAL-RANRDLKELNLANNGIgdagiRALAEG-LKANCNLEVLDLNNN 203

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 299782601 115 NLTQLGAGAFrsagrlvklslannnlvgvhEDAFETLESLQVLELNDNNLR 165
Cdd:cd00116  204 GLTDEGASAL--------------------AETLASLKSLEVLNLGDNNLT 234
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
42-165 9.11e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 43.92  E-value: 9.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  42 CRDR-GLPSVPDPFPLDVRKLLVAGNRIQRIPEDffiFYGDLVYLDFRNNSLRSLEEgTFSGSAKLvfLDLSYNNLTQLG 120
Cdd:PRK15370 184 RLKIlGLTTIPACIPEQITTLILDNNELKSLPEN---LQGNIKTLYANSNQLTSIPA-TLPDTIQE--MELSINRITELP 257

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 299782601 121 AgafRSAGRLVKLSLANNNLVGVHedafETL-ESLQVLELNDNNLR 165
Cdd:PRK15370 258 E---RLPSALQSLDLFHNKISCLP----ENLpEELRYLSVYDNSIR 296
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 82-164 1.03e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 43.11  E-value: 1.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  82 LVYLDFRNNSLRSLE----EGTFSGSAKLVFLDLSYNNLTQLGAGAFRSA-----GRLVKLSLANNNLVgvhEDAFETL- 151
Cdd:cd00116  195 LEVLDLNNNGLTDEGasalAETLASLKSLEVLNLGDNNLTDAGAAALASAllspnISLLTLSLSCNDIT---DDGAKDLa 271

                         90
                 ....*....|....*....
gi 299782601 152 ------ESLQVLELNDNNL 164
Cdd:cd00116  272 evlaekESLLELDLRGNKF 290
LRRCT smart00082
Leucine rich repeat C-terminal domain;
186-237 6.50e-04

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 37.02  E-value: 6.50e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 299782601   186 NPWLCDCDFAHLFSWIQENASKLPKglDEIQCSLPmESRRISLRELSEASFS 237
Cdd:smart00082   1 NPFICDCELRWLLRWLQANEHLQDP--VDLRCASP-SSLRGPLLELLHSEFK 49
LRRNT smart00013
Leucine rich repeat N-terminal domain;
27-58 1.45e-03

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 35.37  E-value: 1.45e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 299782601    27 ACPAGCACTDPHtVDCRDRGLPSVPDPFPLDV 58
Cdd:smart00013   1 ACPAPCNCSGTA-VDCSGRGLTEVPLDLPPDT 31
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 88-164 1.55e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 40.22  E-value: 1.55e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 299782601  88 RNNSLRSLEEgtFSGSAKLVFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNL 164
Cdd:PLN00113 461 RNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535
LRRNT pfam01462
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 27-55 2.28e-03

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 396168 [Multi-domain]  Cd Length: 28  Bit Score: 34.91  E-value: 2.28e-03
                          10        20
                  ....*....|....*....|....*....
gi 299782601   27 ACPAGCACTDPHtVDCRDRGLPSVPDPFP 55
Cdd:pfam01462   1 ACPVPCHCSATV-VNCSDRGLTAVPRDLP 28
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
39-164 6.96e-03

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 37.75  E-value: 6.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  39 TVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQRIPEDffiFYGDLVYLDFRNNSLRSLEEGTFSGsakLVFLDLSYNNLTQ 118
Cdd:PRK15370 224 TLYANSNQLTSIPATLPDTIQEMELSINRITELPER---LPSALQSLDLFHNKISCLPENLPEE---LRYLSVYDNSIRT 297

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 299782601 119 LGAGAFRSagrLVKLSLANNNLVGVHedafETLE-SLQVLELNDNNL 164
Cdd:PRK15370 298 LPAHLPSG---ITHLNVQSNSLTALP----ETLPpGLKTLEAGENAL 337
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 71-164 9.73e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 37.52  E-value: 9.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299782601  71 IPEDFFIFYGDLVYLDFRNNSLR-SLEEGTFSGsakLVFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFE 149
Cdd:PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTgSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

                         90
                 ....*....|....*
gi 299782601 150 TLESLQVLELNDNNL 164
Cdd:PLN00113 186 NLTSLEFLTLASNQL 200
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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