NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|58865922|ref|NP_001012175|]
View 

AN1-type zinc finger protein 3 [Rattus norvegicus]

Protein Classification

zf-A20 and Peroxin-3 domain-containing protein( domain architecture ID 10484656)

zf-A20 and Peroxin-3 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CUZ1 super family cl27569
CDC48-associated ubiquitin-like protein CUZ1, contains AN1-type Zn-finger (protection from As ...
 174-194 4.72e-05

CDC48-associated ubiquitin-like protein CUZ1, contains AN1-type Zn-finger (protection from As/Sb toxicity) [Defense mechanisms];


The actual alignment was detected with superfamily member COG3582:

Pssm-ID: 442801 [Multi-domain]  Cd Length: 279  Bit Score: 43.36  E-value: 4.72e-05
                        10        20
                ....*....|....*....|..
gi 58865922 174 CR-CGYVFCMLHRLPEQHDCTF 194
Cdd:COG3582  17 CRyCGGTFCSEHRLPENHDCPG 38
zf-A20 pfam01754
A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding ...
 19-36 1.15e-03

A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding Domain. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation.


:

Pssm-ID: 460313  Cd Length: 24  Bit Score: 35.17  E-value: 1.15e-03
                          10
                  ....*....|....*...
gi 58865922    19 PCGFWGSSKTMNLCSKCF 36
Cdd:pfam01754   6 GCGFYGSPATNGLCSKCY 23
 
Name Accession Description Interval E-value
CUZ1 COG3582
CDC48-associated ubiquitin-like protein CUZ1, contains AN1-type Zn-finger (protection from As ...
 174-194 4.72e-05

CDC48-associated ubiquitin-like protein CUZ1, contains AN1-type Zn-finger (protection from As/Sb toxicity) [Defense mechanisms];


Pssm-ID: 442801 [Multi-domain]  Cd Length: 279  Bit Score: 43.36  E-value: 4.72e-05
                        10        20
                ....*....|....*....|..
gi 58865922 174 CR-CGYVFCMLHRLPEQHDCTF 194
Cdd:COG3582  17 CRyCGGTFCSEHRLPENHDCPG 38
zf-A20 pfam01754
A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding ...
 19-36 1.15e-03

A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding Domain. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation.


Pssm-ID: 460313  Cd Length: 24  Bit Score: 35.17  E-value: 1.15e-03
                          10
                  ....*....|....*...
gi 58865922    19 PCGFWGSSKTMNLCSKCF 36
Cdd:pfam01754   6 GCGFYGSPATNGLCSKCY 23
zf-AN1 pfam01428
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 160-194 1.63e-03

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues.


Pssm-ID: 460208  Cd Length: 37  Bit Score: 34.97  E-value: 1.63e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 58865922   160 CQTKLELVQQelgsCR-CGYVFCMLHRLPEQHDCTF 194
Cdd:pfam01428   6 CKKKDFLPFK----CRfCGKNFCLKHRLPEDHDCSG 37
ZnF_AN1 smart00154
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 157-195 3.83e-03

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.


Pssm-ID: 197545  Cd Length: 39  Bit Score: 34.29  E-value: 3.83e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 58865922    157 CFQCQTKLELVQQElgsCR-CGYVFCMLHRLPEQHDCTFD 195
Cdd:smart00154   1 CHFCRKKVGLTGFK---CRhCGNLFCGEHRLPEDHDCPGD 37
 
Name Accession Description Interval E-value
CUZ1 COG3582
CDC48-associated ubiquitin-like protein CUZ1, contains AN1-type Zn-finger (protection from As ...
 174-194 4.72e-05

CDC48-associated ubiquitin-like protein CUZ1, contains AN1-type Zn-finger (protection from As/Sb toxicity) [Defense mechanisms];


Pssm-ID: 442801 [Multi-domain]  Cd Length: 279  Bit Score: 43.36  E-value: 4.72e-05
                        10        20
                ....*....|....*....|..
gi 58865922 174 CR-CGYVFCMLHRLPEQHDCTF 194
Cdd:COG3582  17 CRyCGGTFCSEHRLPENHDCPG 38
zf-A20 pfam01754
A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding ...
 19-36 1.15e-03

A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding Domain. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation.


Pssm-ID: 460313  Cd Length: 24  Bit Score: 35.17  E-value: 1.15e-03
                          10
                  ....*....|....*...
gi 58865922    19 PCGFWGSSKTMNLCSKCF 36
Cdd:pfam01754   6 GCGFYGSPATNGLCSKCY 23
zf-AN1 pfam01428
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 160-194 1.63e-03

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues.


Pssm-ID: 460208  Cd Length: 37  Bit Score: 34.97  E-value: 1.63e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 58865922   160 CQTKLELVQQelgsCR-CGYVFCMLHRLPEQHDCTF 194
Cdd:pfam01428   6 CKKKDFLPFK----CRfCGKNFCLKHRLPEDHDCSG 37
ZnF_AN1 smart00154
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 157-195 3.83e-03

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.


Pssm-ID: 197545  Cd Length: 39  Bit Score: 34.29  E-value: 3.83e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 58865922    157 CFQCQTKLELVQQElgsCR-CGYVFCMLHRLPEQHDCTFD 195
Cdd:smart00154   1 CHFCRKKVGLTGFK---CRhCGNLFCGEHRLPEDHDCPGD 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH