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Conserved domains on  [gi|62955491|ref|NP_001017759|]
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small ribosomal subunit protein mS40 [Danio rerio]

Protein Classification

bS18 family ribosomal protein( domain architecture ID 10471228)

bS18 (bS18m and bS18c for mitoribosome and chloroplast) family ribosomal protein is a component of the small ribosomal subunit and it is involved in ribosomal assembly.

Gene Symbol:  rpsR
Gene Ontology:  GO:0006412|GO:0003735|GO:0019843
PubMed:  24524803|27023846

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
125-177 6.59e-16

Ribosomal protein S18;


:

Pssm-ID: 460054  Cd Length: 52  Bit Score: 69.32  E-value: 6.59e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 62955491   125 PNIIIHYKNVNLLQQFFcPETGVVHDPTVTGVCMKQQKLLSKAIETAKDFGLL 177
Cdd:pfam01084   1 KNEYIDYKDVELLSQFI-TERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
 
Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
125-177 6.59e-16

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 69.32  E-value: 6.59e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 62955491   125 PNIIIHYKNVNLLQQFFcPETGVVHDPTVTGVCMKQQKLLSKAIETAKDFGLL 177
Cdd:pfam01084   1 KNEYIDYKDVELLSQFI-TERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
rps18 CHL00077
ribosomal protein S18
 101-177 2.35e-08

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 49.97  E-value: 2.35e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62955491  101 PQKTRKTCIRGDKKCANPCPicrdPNIIIHYKNVNLLQQFFCpETGVVHDPTVTGVCMKQQKLLSKAIETAKDFGLL 177
Cdd:CHL00077   4 SKRPFRKSKRSFRRRLPPIQ----SGDRIDYKNMSLLSRFIS-EQGKILSRRVTRLTLKQQRLITKAIKQARILSLL 75
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 119-177 1.65e-06

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440008  Cd Length: 81  Bit Score: 44.76  E-value: 1.65e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 62955491 119 CPICRDPNIIIHYKNVNLLQQFfCPETGVVHDPTVTGVCMKQQKLLSKAIETAKDFGLL 177
Cdd:COG0238  17 CRFCADKIEYIDYKDVELLKKF-ISERGKILPRRITGTCAKHQRQLATAIKRARHLALL 74
 
Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
125-177 6.59e-16

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 69.32  E-value: 6.59e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 62955491   125 PNIIIHYKNVNLLQQFFcPETGVVHDPTVTGVCMKQQKLLSKAIETAKDFGLL 177
Cdd:pfam01084   1 KNEYIDYKDVELLSQFI-TERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
rps18 CHL00077
ribosomal protein S18
 101-177 2.35e-08

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 49.97  E-value: 2.35e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62955491  101 PQKTRKTCIRGDKKCANPCPicrdPNIIIHYKNVNLLQQFFCpETGVVHDPTVTGVCMKQQKLLSKAIETAKDFGLL 177
Cdd:CHL00077   4 SKRPFRKSKRSFRRRLPPIQ----SGDRIDYKNMSLLSRFIS-EQGKILSRRVTRLTLKQQRLITKAIKQARILSLL 75
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 119-177 1.65e-06

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440008  Cd Length: 81  Bit Score: 44.76  E-value: 1.65e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 62955491 119 CPICRDPNIIIHYKNVNLLQQFfCPETGVVHDPTVTGVCMKQQKLLSKAIETAKDFGLL 177
Cdd:COG0238  17 CRFCADKIEYIDYKDVELLKKF-ISERGKILPRRITGTCAKHQRQLATAIKRARHLALL 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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