|
Name |
Accession |
Description |
Interval |
E-value |
| Bromodomain |
cd04369 |
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear ... |
137-193 |
2.51e-11 |
|
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Pssm-ID: 99922 [Multi-domain] Cd Length: 99 Bit Score: 62.00 E-value: 2.51e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 148612838 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKL 193
Cdd:cd04369 43 MDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
|
| BROMO |
smart00297 |
bromo domain; |
137-196 |
4.01e-07 |
|
bromo domain;
Pssm-ID: 197636 [Multi-domain] Cd Length: 107 Bit Score: 50.35 E-value: 4.01e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKLALL 196
Cdd:smart00297 48 MDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLREL 107
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
1142-2007 |
1.48e-05 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 50.54 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1142 TTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVSAATFS 1221
Cdd:COG3210 28 GSNTAGTSGLNILGSGGVGTAGGIASNAGTTASTSGGSGTAGGVGNTSASTGGIGAAAANTAGTLETGLTSNIGGGSVNG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1222 LPSASPTISSTGQPLSSTTTLNGSTNPGSSFNcFAQQTADSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPDQN 1301
Cdd:COG3210 108 SNSTGNGTLTTTAASATTGNNTGGTTTSSTNT-VTTLGGTTTGNTVLSTSGAGNNTNTNNSSSGTNIGNSIPTTGGSLNV 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1302 SPNTVSSSSVFTfapqlqAFLVPKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSIPASFAPSMGKNLKLTLGHTTGSGD 1381
Cdd:COG3210 187 VAANPTGVTGVG------GALINATAGVLANAGGGTAGGVASANSTLTGGVVAAGTGAGVISTGGTDISSLSVAAGAGTG 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1382 LGHVIDKTSHMPSSPLKSSIcSSTLLPSTTSSSVSVISISAANFGQNNANIIHTPTKQQQVDYITKSYPVTRSEATAATN 1461
Cdd:COG3210 261 GAGGTGNAGNTTIGTTVTGT-NATGSNTAGASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGNGDGNNTTANS 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1462 GDVISGTpvqklmlvsapSILSSGNGTAINMTPALTSTGVSAQKLVFINAPVPSGTSTPTLVAESLKQTLPPplhkAYVK 1541
Cdd:COG3210 340 GAGLVSG-----------GTGGNNGTTGTGAGSGLTGTGNGGGLTTAGAGTVASTVGTATASTGNASSTTVL----GSGS 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1542 TPEQPQIVLIPSTVGTPIKINSSPAVSQIKDVKIGLNIGQAIVNTSGTVPAIPSINILQNVTpkGEDKSSKGYILPLSTS 1621
Cdd:COG3210 405 LATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDV--SGTGTVTNSAGNTTSA 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1622 GNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVTGANLSLGSFPVTSASASAGAQPPVLVSGNDTSsrimpILSNRLCS 1701
Cdd:COG3210 483 TTLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVS-----GGASGTTA 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1702 SSLGNTVAISTVKTGHLASSVLISTTQPVVSPKCLTSALQIPVTVALPTPATTSPKIINTVPHSAAVPGATRSVSISKRQ 1781
Cdd:COG3210 558 ASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGS 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1782 SRTSLQFHSPGISTTVPTNVNTNKPQTELSSLSTSPGKITNTSNFASLPNQQALVKTPSYSSAPGGTTIHTASAPSNVTS 1861
Cdd:COG3210 638 AVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTG 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1862 LVGSQFSEPciQQKIVINTSTplaPGTQIMINgtRFIVPPQGLGAGSHVLLISTNPKYGAPLVLNSGQGIQS--TPIDNS 1939
Cdd:COG3210 718 QIGALANAN--GDTVTFGNLG---TGATLTLN--AGVTITSGNAGTLSIGLTANTTASGTTLTLANANGNTSagATLDNA 790
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1940 AQKIT--LASNNSLSGqplqhplrSPTKFINSFGNASSIPTVHTSPQLINTTAKVPVPPPVPTVSLTSVI 2007
Cdd:COG3210 791 GAEISidITADGTITA--------AGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGT 852
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1198-1557 |
2.52e-05 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 49.19 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1198 TPSVKTSQSEAGKAKNAVSAATFSLPSASPtiSSTGQPLSSTTTLNGSTNPGSSFncfaqqTADSSEAKQELKTVCIRDS 1277
Cdd:pfam17823 90 HTPHGTDLSEPATREGAADGAASRALAAAA--SSSPSSAAQSLPAAIAALPSEAF------SAPRAAACRANASAAPRAA 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1278 QSILVRTRGGNTGVVKVQTNPDQNSPNTVSSSSVFTFAPQLQAFLVPKSTTSSSAfspvAGTTTTSSLSPFSQTPTSVSI 1357
Cdd:pfam17823 162 IAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAA----TATGHPAAGTALAAVGNSSPA 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1358 PASFAPSMGKNLKLTLGHTTGSGDLGHVIDKTSHMpSSPLkssicSSTLLPSTTSSSVSVISISAANFG-QNNANIIHTP 1436
Cdd:pfam17823 238 AGTVTAAVGTVTPAALATLAAAAGTVASAAGTINM-GDPH-----ARRLSPAKHMPSDTMARNPAAPMGaQAQGPIIQVS 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1437 TKQQQVDYITKSYPvtrseataatngdvisgTPVQKLMLVSAPSILSSGNGTAInmtpalTSTGVSAQKLVFINAPVPSG 1516
Cdd:pfam17823 312 TDQPVHNTAGEPTP-----------------SPSNTTLEPNTPKSVASTNLAVV------TTTKAQAKEPSASPVPVLHT 368
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 148612838 1517 TSTPTLVAESlKQTLPPPLhkAYVKTPEQPQIVLIPSTVGT 1557
Cdd:pfam17823 369 SMIPEVEATS-PTTQPSPL--LPTQGAAGPGILLAPEQVAT 406
|
|
| COG5076 |
COG5076 |
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin ... |
137-186 |
3.54e-05 |
|
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription];
Pssm-ID: 227408 [Multi-domain] Cd Length: 371 Bit Score: 48.26 E-value: 3.54e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 148612838 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLE 186
Cdd:COG5076 189 MDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELE 238
|
|
| Bromodomain |
pfam00439 |
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin ... |
137-184 |
4.07e-05 |
|
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 425683 [Multi-domain] Cd Length: 84 Bit Score: 43.84 E-value: 4.07e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 148612838 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQK 184
Cdd:pfam00439 37 MDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGSVIYKAAEK 84
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
250-288 |
1.22e-04 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 45.47 E-value: 1.22e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 148612838 250 QVLRQEEQLRAKEEKRLREQERKEAEEASQKEIEEW-ERK 288
Cdd:pfam13904 65 QRQRQKELQAQKEEREKEEQEAELRKRLAKEKYQEWlQRK 104
|
|
| PHA03255 |
PHA03255 |
BDLF3; Provisional |
1126-1248 |
1.38e-03 |
|
BDLF3; Provisional
Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 42.58 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1126 PLQQKGTEQHCSSFPQTTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQ 1205
Cdd:PHA03255 53 PSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRS 132
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 148612838 1206 SEAGKAKNAVSAATfslpSASPTISSTGQPLSSTTTLNGSTNP 1248
Cdd:PHA03255 133 SSTTSATTRITNAT----TLAPTLSSKGTSNATKTTAELPTVP 171
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
751-981 |
3.55e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 751 RKTVIKSPTVpEFQLICTNLDELRELITKIENELKDLENSRKKSGKWYHRRQAVKELHSTlirllnellpwEPKLMKAfq 830
Cdd:PRK03918 450 RKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL-----------EEKLKKY-- 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 831 rNRSRLKKDYDDFRrqpdhdTFNRELwttDEGEGD---LGKD--------SPKGEISKSIDSTEP-----LDILEKDHFD 894
Cdd:PRK03918 516 -NLEELEKKAEEYE------KLKEKL---IKLKGEiksLKKElekleelkKKLAELEKKLDELEEelaelLKELEELGFE 585
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 895 S---DDMKLSEIDfpmarsKLLKKELPSKDLPKTLLKTLKRQSKQTDYVDDSTKELSpRKKAKLSTNETTVENLESDvqi 971
Cdd:PRK03918 586 SveeLEERLKELE------PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELA-ETEKRLEELRKELEELEKK--- 655
|
250
....*....|
gi 148612838 972 dcFSESKHTE 981
Cdd:PRK03918 656 --YSEEEYEE 663
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Bromodomain |
cd04369 |
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear ... |
137-193 |
2.51e-11 |
|
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Pssm-ID: 99922 [Multi-domain] Cd Length: 99 Bit Score: 62.00 E-value: 2.51e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 148612838 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKL 193
Cdd:cd04369 43 MDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
|
| Bromo_BDF1_2_I |
cd05500 |
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast ... |
137-193 |
8.71e-08 |
|
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99932 Cd Length: 103 Bit Score: 51.93 E-value: 8.71e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 148612838 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKL 193
Cdd:cd05500 47 MDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVSQMGKRLQAAFEKHL 103
|
|
| Bromo_Brdt_II_like |
cd05498 |
Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET ... |
83-192 |
1.19e-07 |
|
Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99930 Cd Length: 102 Bit Score: 51.51 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 83 YRILGEFLQEKHRGLTAPFLQPLGGVATAEEEVAEGPrsggrggrafpQQPgqgMCLLQMEEKFASGQYGGITEFVADFR 162
Cdd:cd05498 6 SGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDII-----------KHP---MDLSTIKKKLDNREYADAQEFAADVR 71
|
90 100 110
....*....|....*....|....*....|
gi 148612838 163 LMLETCYRLHGVDHWISKQGQKLEMMLEQK 192
Cdd:cd05498 72 LMFSNCYKYNPPDHPVHAMARKLQDVFEDR 101
|
|
| Bromo_BDF1_2_II |
cd05499 |
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast ... |
78-193 |
1.34e-07 |
|
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99931 Cd Length: 102 Bit Score: 51.52 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 78 ELQQGYRILGEFLQEKHRGLTAPFLQPLGGVATaeeevaegprsggrggrafpQQPG------QGMCLLQMEEKFASGQY 151
Cdd:cd05499 1 ELKFCEEVLKELMKPKHSAYNWPFLDPVDPVAL--------------------NIPNyfsiikKPMDLGTISKKLQNGQY 60
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 148612838 152 GGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKL 193
Cdd:cd05499 61 QSAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEEVFNDKW 102
|
|
| BROMO |
smart00297 |
bromo domain; |
137-196 |
4.01e-07 |
|
bromo domain;
Pssm-ID: 197636 [Multi-domain] Cd Length: 107 Bit Score: 50.35 E-value: 4.01e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKLALL 196
Cdd:smart00297 48 MDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLREL 107
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
1142-2007 |
1.48e-05 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 50.54 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1142 TTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVSAATFS 1221
Cdd:COG3210 28 GSNTAGTSGLNILGSGGVGTAGGIASNAGTTASTSGGSGTAGGVGNTSASTGGIGAAAANTAGTLETGLTSNIGGGSVNG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1222 LPSASPTISSTGQPLSSTTTLNGSTNPGSSFNcFAQQTADSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPDQN 1301
Cdd:COG3210 108 SNSTGNGTLTTTAASATTGNNTGGTTTSSTNT-VTTLGGTTTGNTVLSTSGAGNNTNTNNSSSGTNIGNSIPTTGGSLNV 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1302 SPNTVSSSSVFTfapqlqAFLVPKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSIPASFAPSMGKNLKLTLGHTTGSGD 1381
Cdd:COG3210 187 VAANPTGVTGVG------GALINATAGVLANAGGGTAGGVASANSTLTGGVVAAGTGAGVISTGGTDISSLSVAAGAGTG 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1382 LGHVIDKTSHMPSSPLKSSIcSSTLLPSTTSSSVSVISISAANFGQNNANIIHTPTKQQQVDYITKSYPVTRSEATAATN 1461
Cdd:COG3210 261 GAGGTGNAGNTTIGTTVTGT-NATGSNTAGASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGNGDGNNTTANS 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1462 GDVISGTpvqklmlvsapSILSSGNGTAINMTPALTSTGVSAQKLVFINAPVPSGTSTPTLVAESLKQTLPPplhkAYVK 1541
Cdd:COG3210 340 GAGLVSG-----------GTGGNNGTTGTGAGSGLTGTGNGGGLTTAGAGTVASTVGTATASTGNASSTTVL----GSGS 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1542 TPEQPQIVLIPSTVGTPIKINSSPAVSQIKDVKIGLNIGQAIVNTSGTVPAIPSINILQNVTpkGEDKSSKGYILPLSTS 1621
Cdd:COG3210 405 LATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDV--SGTGTVTNSAGNTTSA 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1622 GNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVTGANLSLGSFPVTSASASAGAQPPVLVSGNDTSsrimpILSNRLCS 1701
Cdd:COG3210 483 TTLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVS-----GGASGTTA 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1702 SSLGNTVAISTVKTGHLASSVLISTTQPVVSPKCLTSALQIPVTVALPTPATTSPKIINTVPHSAAVPGATRSVSISKRQ 1781
Cdd:COG3210 558 ASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGS 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1782 SRTSLQFHSPGISTTVPTNVNTNKPQTELSSLSTSPGKITNTSNFASLPNQQALVKTPSYSSAPGGTTIHTASAPSNVTS 1861
Cdd:COG3210 638 AVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTG 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1862 LVGSQFSEPciQQKIVINTSTplaPGTQIMINgtRFIVPPQGLGAGSHVLLISTNPKYGAPLVLNSGQGIQS--TPIDNS 1939
Cdd:COG3210 718 QIGALANAN--GDTVTFGNLG---TGATLTLN--AGVTITSGNAGTLSIGLTANTTASGTTLTLANANGNTSagATLDNA 790
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1940 AQKIT--LASNNSLSGqplqhplrSPTKFINSFGNASSIPTVHTSPQLINTTAKVPVPPPVPTVSLTSVI 2007
Cdd:COG3210 791 GAEISidITADGTITA--------AGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGT 852
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1198-1557 |
2.52e-05 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 49.19 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1198 TPSVKTSQSEAGKAKNAVSAATFSLPSASPtiSSTGQPLSSTTTLNGSTNPGSSFncfaqqTADSSEAKQELKTVCIRDS 1277
Cdd:pfam17823 90 HTPHGTDLSEPATREGAADGAASRALAAAA--SSSPSSAAQSLPAAIAALPSEAF------SAPRAAACRANASAAPRAA 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1278 QSILVRTRGGNTGVVKVQTNPDQNSPNTVSSSSVFTFAPQLQAFLVPKSTTSSSAfspvAGTTTTSSLSPFSQTPTSVSI 1357
Cdd:pfam17823 162 IAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAA----TATGHPAAGTALAAVGNSSPA 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1358 PASFAPSMGKNLKLTLGHTTGSGDLGHVIDKTSHMpSSPLkssicSSTLLPSTTSSSVSVISISAANFG-QNNANIIHTP 1436
Cdd:pfam17823 238 AGTVTAAVGTVTPAALATLAAAAGTVASAAGTINM-GDPH-----ARRLSPAKHMPSDTMARNPAAPMGaQAQGPIIQVS 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1437 TKQQQVDYITKSYPvtrseataatngdvisgTPVQKLMLVSAPSILSSGNGTAInmtpalTSTGVSAQKLVFINAPVPSG 1516
Cdd:pfam17823 312 TDQPVHNTAGEPTP-----------------SPSNTTLEPNTPKSVASTNLAVV------TTTKAQAKEPSASPVPVLHT 368
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 148612838 1517 TSTPTLVAESlKQTLPPPLhkAYVKTPEQPQIVLIPSTVGT 1557
Cdd:pfam17823 369 SMIPEVEATS-PTTQPSPL--LPTQGAAGPGILLAPEQVAT 406
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1587-1893 |
3.23e-05 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 48.80 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1587 SGTVPAIPSINILQNVTPKGEDKSSKGYILPLSTSGNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVTGANLSLG--- 1663
Cdd:pfam17823 18 SHAAPADPRHFVLNKMWNGAGKQNASGDAVPRADNKSSEQ*NFCAATAAPAPVTLTKGTSAAHLNSTEVTAEHTPHGtdl 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1664 SFPVTSASASAGAQPPVLVSGndTSSRIMPILSNRLCSSSLGNTVAISTVKTGHLASSVLISTTQPVVSPKCLTSALQIP 1743
Cdd:pfam17823 98 SEPATREGAADGAASRALAAA--ASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1744 VTVALPTPATTSPKIINTVPHSAAVPGATRSVSISKRQSRTSLQFHsPGIST-------------TVPTNVNTNKPQTeL 1810
Cdd:pfam17823 176 RTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGH-PAAGTalaavgnsspaagTVTAAVGTVTPAA-L 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1811 SSLSTSPGKITNTSNFASLPNQQALVKTPSySSAPGGTTIHTASAPSnvtslvGSQFSEPCIQQKI---VINTS---TPL 1884
Cdd:pfam17823 254 ATLAAAAGTVASAAGTINMGDPHARRLSPA-KHMPSDTMARNPAAPM------GAQAQGPIIQVSTdqpVHNTAgepTPS 326
|
....*....
gi 148612838 1885 APGTQIMIN 1893
Cdd:pfam17823 327 PSNTTLEPN 335
|
|
| Bromo_gcn5_like |
cd05509 |
Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates ... |
137-193 |
3.31e-05 |
|
Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99941 [Multi-domain] Cd Length: 101 Bit Score: 44.47 E-value: 3.31e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 148612838 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKL 193
Cdd:cd05509 42 MDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWKKL 98
|
|
| COG5076 |
COG5076 |
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin ... |
137-186 |
3.54e-05 |
|
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription];
Pssm-ID: 227408 [Multi-domain] Cd Length: 371 Bit Score: 48.26 E-value: 3.54e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 148612838 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLE 186
Cdd:COG5076 189 MDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELE 238
|
|
| Bromodomain |
pfam00439 |
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin ... |
137-184 |
4.07e-05 |
|
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 425683 [Multi-domain] Cd Length: 84 Bit Score: 43.84 E-value: 4.07e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 148612838 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQK 184
Cdd:pfam00439 37 MDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGSVIYKAAEK 84
|
|
| Hia |
COG5295 |
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ... |
1137-1719 |
5.97e-05 |
|
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444098 [Multi-domain] Cd Length: 785 Bit Score: 48.23 E-value: 5.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1137 SSFPQTTNINSSLASVFVNSPGTVSTQLPNTAFNKTITplSNISSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVS 1216
Cdd:COG5295 29 SATVTSAAQSTGSAATSSGSSSAAGGSGSTSSLTAAAA--TAGAGSGGTSATAASSVASGGASAATAASTGTGNTAGTAA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1217 AATFSLPSASPTISSTGQPLSSTTTLNGSTNPGSSFncfAQQTADSSEAKQELKTVcIRDSQSILVRTRGGNTGVVKVQT 1296
Cdd:COG5295 107 TVAGAASSGSATNAGASAGASAAAAAGSTAAAGGAA---ASTGGSSAAGGSNTATA-TGSSTANAATAAAGATSTSASGS 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1297 NPdqNSPNTVSSSSVFTFAPQLQAFLVPKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSIPASFAPSMGK-NLKLTLGH 1375
Cdd:COG5295 183 SS--GASGAAAASAATGASAGGTASAAASASSSATGTSASVGVNAGAATGSAASAGGSASAGAASGNATTAsASSVSGSA 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1376 TTGSGDLGHVIDKTSHMPSSPLKSSICSSTLLPSTTSSSVSVISISAANFGQNNANIIHTPTKQQQvdyITKSYPVTRSE 1455
Cdd:COG5295 261 VAAGTASTATTASTTAASGAAGTATAAAGGDAAAAGSASSTGAANATAGGGNAGSGGGGAAALGSA---GGSSGVGTASG 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1456 ATAATNGDVISGTPVQ---KLMLVSAPSILSSGNGTAINMTPALTSTGVSAQKLVFINAPVPSGTSTPTLVAESlkqtlp 1532
Cdd:COG5295 338 ASAAAATNDGTANGAGtsaAADATSGGGAGGGGAAATSSSGGSATAAGNAAGAAGAGSAGSGGSSTGASAGGGA------ 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1533 pplhKAYVKTPEQPQIVLIPSTVGTPIKINSSPAVSQIKDVKIGLNIGQAIVNTSGTVPAIPSINILQNVTPKGEDKSSK 1612
Cdd:COG5295 412 ----SAAGGAAAGSAAAGTSSNTSAVGASNGASGTSSSASSAGAAGGGTAGAGGAANVGAATTAASAAATAAAATSSAAI 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1613 GYILPLSTSGNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVTGANLSLGSFPVTSASASAGAQPPVLVSGNDTSSRIM 1692
Cdd:COG5295 488 AGATATGAGAAAGGAGAGAAGGAGSAAAGGAANAAAASGATATAGSAGGGAAAAAGGGSTTAATGTNSVAVGNNTATGAN 567
|
570 580
....*....|....*....|....*..
gi 148612838 1693 PILSNRLCSSSLGNTVAISTVKTGHLA 1719
Cdd:COG5295 568 SVALGAGSVASGANSVSVGAAGAENVA 594
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
250-288 |
1.22e-04 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 45.47 E-value: 1.22e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 148612838 250 QVLRQEEQLRAKEEKRLREQERKEAEEASQKEIEEW-ERK 288
Cdd:pfam13904 65 QRQRQKELQAQKEEREKEEQEAELRKRLAKEKYQEWlQRK 104
|
|
| Bromo_tif1_like |
cd05502 |
Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of ... |
140-196 |
1.45e-04 |
|
Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99934 [Multi-domain] Cd Length: 109 Bit Score: 43.05 E-value: 1.45e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 148612838 140 LQMEEkfaSGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKLALL 196
Cdd:cd05502 53 LQPKS---PQHYSSPEEFVADVRLMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEI 106
|
|
| Chi1 |
COG3469 |
Chitinase [Carbohydrate transport and metabolism]; |
1156-1370 |
1.61e-04 |
|
Chitinase [Carbohydrate transport and metabolism];
Pssm-ID: 442692 [Multi-domain] Cd Length: 534 Bit Score: 46.67 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1156 SPGTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVSAATFSLPSASPTiSSTGQP 1235
Cdd:COG3469 3 SVSTAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSST-TSTTAT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1236 LSSTTTLNGSTNPGSSFNCFAQQTADSSEAKQELKTVCIRDSQSILVRTrGGNTGVVKVQTNPDQNSPNTVSSSSVFTFA 1315
Cdd:COG3469 82 ATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTA-GSTTTSGASATSSAGSTTTTTTVSGTETAT 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 148612838 1316 PQlqAFLVPKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSIPASFAPSMGKNLK 1370
Cdd:COG3469 161 GG--TTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLP 213
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
253-292 |
2.18e-04 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 43.49 E-value: 2.18e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 148612838 253 RQEEQLRAKEEKRLRE--QERKEAEEASQKEIEEWERKLLAQ 292
Cdd:pfam05672 59 REEEARRLEEERRREEeeRQRKAEEEAEEREQREQEEQERLQ 100
|
|
| COG5099 |
COG5099 |
RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal ... |
1141-1357 |
7.09e-04 |
|
RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227430 [Multi-domain] Cd Length: 777 Bit Score: 44.74 E-value: 7.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1141 QTTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISsarPQPLSPVTSVSNLLTPSVKTSQSEagKAKNAVSAATF 1220
Cdd:COG5099 5 TMNNLLPSIKSQLHHSKKSPPSSTTSQELMNGNSTPNSFS---PIPSKASSSATFTLNLPINNSVNH--KITSSSSSRRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1221 SLPSASPTISST--GQPLSSTTTLNGSTNPGSSFNCFAQQTADSSEAKQELKTVcirdSQSILVRTRGGNTGVVKVQTNP 1298
Cdd:COG5099 80 PSGSWSVAISSStsGSQSLLMELPSSSFNPSTSSRNKSNSALSSTQQGNANSSV----TLSSSTASSMFNSNKLPLPNPN 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 148612838 1299 DQNSPNTVSSSSVFTFAPQLQAFlvpKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSI 1357
Cdd:COG5099 156 HSNSATTNQSGSSFINTPASSSS---QPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSD 211
|
|
| Selenoprotein_S |
pfam06936 |
Selenoprotein S (SelS); This family consists of several mammalian selenoprotein S (SelS) ... |
225-287 |
9.63e-04 |
|
Selenoprotein S (SelS); This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. Selenoprotein S (SelS) is an intrinsically disordered protein. It formsa selenosulfide bond between cys 174 and Sec 188, that has a redox potential -234 mV. In vitro, SelS is an efficient reductase that depends on the presence of selenocysteine. Due to the high reactivity, SelS also has peroxidase activity that can catalyze the reduction of hydrogen peroxide. It is also resistant to inactivation by hydrogen peroxide which might provide evolutionary advantage compared to cysteine containing peroxidases.
Pssm-ID: 462043 [Multi-domain] Cd Length: 192 Bit Score: 42.52 E-value: 9.63e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148612838 225 TSTRRRSTPRSLAGLTSGVF----ESIMVQVLRQEEQLRAKEEKrLREQERKEAEEASQKEIEEWER 287
Cdd:pfam06936 59 TALRQRSSDHSAATVDPDLVvkrqEALEASRLRMQEELDAQAEK-FKEKQKQLEEEKRRQKIEMWES 124
|
|
| PHA03255 |
PHA03255 |
BDLF3; Provisional |
1126-1248 |
1.38e-03 |
|
BDLF3; Provisional
Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 42.58 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1126 PLQQKGTEQHCSSFPQTTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQ 1205
Cdd:PHA03255 53 PSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRS 132
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 148612838 1206 SEAGKAKNAVSAATfslpSASPTISSTGQPLSSTTTLNGSTNP 1248
Cdd:PHA03255 133 SSTTSATTRITNAT----TLAPTLSSKGTSNATKTTAELPTVP 171
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
751-981 |
3.55e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 751 RKTVIKSPTVpEFQLICTNLDELRELITKIENELKDLENSRKKSGKWYHRRQAVKELHSTlirllnellpwEPKLMKAfq 830
Cdd:PRK03918 450 RKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL-----------EEKLKKY-- 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 831 rNRSRLKKDYDDFRrqpdhdTFNRELwttDEGEGD---LGKD--------SPKGEISKSIDSTEP-----LDILEKDHFD 894
Cdd:PRK03918 516 -NLEELEKKAEEYE------KLKEKL---IKLKGEiksLKKElekleelkKKLAELEKKLDELEEelaelLKELEELGFE 585
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 895 S---DDMKLSEIDfpmarsKLLKKELPSKDLPKTLLKTLKRQSKQTDYVDDSTKELSpRKKAKLSTNETTVENLESDvqi 971
Cdd:PRK03918 586 SveeLEERLKELE------PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELA-ETEKRLEELRKELEELEKK--- 655
|
250
....*....|
gi 148612838 972 dcFSESKHTE 981
Cdd:PRK03918 656 --YSEEEYEE 663
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1180-1760 |
4.86e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.21 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1180 SSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVSAATFSLPSASPTISSTGQPLSSTTTlNGSTNPGSSFncfaqqt 1259
Cdd:pfam05109 312 SQDMPTNTTDITYVGDNATYSVPMVTSEDANSPNVTVTAFWAWPNNTETDFKCKWTLTSGTP-SGCENISGAF------- 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1260 adSSEAKQELKTVCIRDSQSILVRTRGGNTGVvkvqtnpdqnspnTVSSSSVFTFAPQlqaflvpkSTTSSSAFSPV--A 1337
Cdd:pfam05109 384 --ASNRTFDITVSGLGTAPKTLIITRTATNAT-------------TTTHKVIFSKAPE--------STTTSPTLNTTgfA 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1338 GTTTTSSLSPFSQTPTSVSIPASFAPSMGknlkltlghttgsgdlghVIDKTSHMPSSplkSSICSSTLLPSTTSssvsv 1417
Cdd:pfam05109 441 APNTTTGLPSSTHVPTNLTAPASTGPTVS------------------TADVTSPTPAG---TTSGASPVTPSPSP----- 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1418 isisaanfgQNNANIIHTPTKQQQVDYITKSYPVTRSEATAATNGDVISGTPVqkLMLVSAPSILSSGNGTAINMTPALT 1497
Cdd:pfam05109 495 ---------RDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPT--LGKTSPTSAVTTPTPNATSPTPAVT 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1498 STGVsaqklvfiNAPVPS-GTSTPTLVAeslkqTLPPPLHKAYVKTPEQPQIVLIPSTVGtpiKINSSPAV-SQIKDVKI 1575
Cdd:pfam05109 564 TPTP--------NATIPTlGKTSPTSAV-----TTPTPNATSPTVGETSPQANTTNHTLG---GTSSTPVVtSPPKNATS 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1576 GLNIGQAIVNTSGTVP-AIPSINILQNVTPKGEDKSSKGyiLPLSTSGNsvPVSSNFVSQnITPVNES---VVSSARAVN 1651
Cdd:pfam05109 628 AVTTGQHNITSSSTSSmSLRPSSISETLSPSTSDNSTSH--MPLLTSAH--PTGGENITQ-VTPASTSthhVSTSSPAPR 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612838 1652 VLSVTGA----NLSLGSFP----VTSASASAGAQPPVLVSGNDTSSRIMPILSNRLCSSSLGNTVA-------------- 1709
Cdd:pfam05109 703 PGTTSQAsgpgNSSTSTKPgevnVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTGGKHTTghgartstepttdy 782
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 148612838 1710 ---ISTVKTGHLASSVLISTTQPVVSPK-CLTSAlqiPVTVA---LPTPATTSPKIIN 1760
Cdd:pfam05109 783 ggdSTTPRTRYNATTYLPPSTSSKLRPRwTFTSP---PVTTAqatVPVPPTSQPRFSN 837
|
|
| Casc1_N |
pfam15927 |
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
256-293 |
7.82e-03 |
|
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important.
Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 40.04 E-value: 7.82e-03
10 20 30
....*....|....*....|....*....|....*....
gi 148612838 256 EQLRAKEEKRLR-EQERKEAEEASQKEIEEWERKLLAQA 293
Cdd:pfam15927 1 ARLREEEEERLRaEEEEAERLEEERREEEEEERLAAEQD 39
|
|
| |
