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Conserved domains on  [gi|66277202|ref|NP_001018121|]
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podocalyxin isoform 1 precursor [Homo sapiens]

Protein Classification

Dcp1 family protein; LCP family protein( domain architecture ID 13557104)

Dcp1 (mRNA-decapping enzyme subunit 1) family protein similar to Arabidopsis thaliana mRNA-decapping enzyme-like protein that acts as a component of the decapping complex and is involved in the degradation of mRNAs| LytR-CpsA-Psr (LCP) family protein is implicated in the attachment of anionic polymers to cell wall peptidoglycan in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CD34_antigen pfam06365
CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The ...
358-558 7.29e-76

CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteriztic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion.


:

Pssm-ID: 461884  Cd Length: 211  Bit Score: 239.26  E-value: 7.29e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   358 VLNLTGNTLCAG--GASDEKLISLICRAVKATFNPAQDKCGIRLASVPGSQTVVVKEITIHTKLPAKDVYERLKDKWDEL 435
Cdd:pfam06365   1 ILNLNETSDCEDfkKEKGEDLLQVLCRAFSATFNSPQDVCSILLAKSEENDQCLLLTLANETGLPPKAVLELLKDKRRDL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   436 KEAGVSDMKLGDQGPPEE--AEDRFSMPLIITIVC--MASFLLLVAALYGCCHQRLSQRKDQQRLTEELQTVENGYHDNP 511
Cdd:pfam06365  81 EELGIQNFTYGTECQEEDvqSHQDYSKLTLIALVTsgILLAILLVAGYYGCLHRRRSKSKAGERLGEELQTVENGYHDNP 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 66277202   512 TLEVME-TSSEMQEK----KVVSLNGElgDSWIVPLDNLTKDDLD-EEEDTHL 558
Cdd:pfam06365 161 TLSVAPdTQSEMQEKpsvnGGAQENGT--GSWIVPLSRNGHSDRQhVEEDTHL 211
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
37-304 1.94e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 50.69  E-value: 1.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202    37 TTTDSSNKTAPTPA-SSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGN 115
Cdd:pfam05109 499 TESKAPDMTSPTSAvTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTS 578
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   116 PTTTIESPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTdltstkAEHLTTPHPTSPLSPRQPTST 195
Cdd:pfam05109 579 PTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTT------GQHNITSSSTSSMSLRPSSIS 652
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   196 HPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTlletvfHHVSQAglellTSGDLPTLASQSAGITASSVISQR 275
Cdd:pfam05109 653 ETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTST------HHVSTS-----SPAPRPGTTSQASGPGNSSTSTKP 721
                         250       260       270
                  ....*....|....*....|....*....|....
gi 66277202   276 -----TQQTSSQMPASSTAPSSQETVQPTSPATA 304
Cdd:pfam05109 722 gevnvTKGTPPKNATSPQAPSGQKTAVPTVTSTG 755
 
Name Accession Description Interval E-value
CD34_antigen pfam06365
CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The ...
358-558 7.29e-76

CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteriztic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion.


Pssm-ID: 461884  Cd Length: 211  Bit Score: 239.26  E-value: 7.29e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   358 VLNLTGNTLCAG--GASDEKLISLICRAVKATFNPAQDKCGIRLASVPGSQTVVVKEITIHTKLPAKDVYERLKDKWDEL 435
Cdd:pfam06365   1 ILNLNETSDCEDfkKEKGEDLLQVLCRAFSATFNSPQDVCSILLAKSEENDQCLLLTLANETGLPPKAVLELLKDKRRDL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   436 KEAGVSDMKLGDQGPPEE--AEDRFSMPLIITIVC--MASFLLLVAALYGCCHQRLSQRKDQQRLTEELQTVENGYHDNP 511
Cdd:pfam06365  81 EELGIQNFTYGTECQEEDvqSHQDYSKLTLIALVTsgILLAILLVAGYYGCLHRRRSKSKAGERLGEELQTVENGYHDNP 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 66277202   512 TLEVME-TSSEMQEK----KVVSLNGElgDSWIVPLDNLTKDDLD-EEEDTHL 558
Cdd:pfam06365 161 TLSVAPdTQSEMQEKpsvnGGAQENGT--GSWIVPLSRNGHSDRQhVEEDTHL 211
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
37-304 1.94e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 50.69  E-value: 1.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202    37 TTTDSSNKTAPTPA-SSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGN 115
Cdd:pfam05109 499 TESKAPDMTSPTSAvTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTS 578
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   116 PTTTIESPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTdltstkAEHLTTPHPTSPLSPRQPTST 195
Cdd:pfam05109 579 PTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTT------GQHNITSSSTSSMSLRPSSIS 652
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   196 HPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTlletvfHHVSQAglellTSGDLPTLASQSAGITASSVISQR 275
Cdd:pfam05109 653 ETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTST------HHVSTS-----SPAPRPGTTSQASGPGNSSTSTKP 721
                         250       260       270
                  ....*....|....*....|....*....|....
gi 66277202   276 -----TQQTSSQMPASSTAPSSQETVQPTSPATA 304
Cdd:pfam05109 722 gevnvTKGTPPKNATSPQAPSGQKTAVPTVTSTG 755
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
39-333 6.23e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.85  E-value: 6.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202    39 TDSSNKTAPTPASsvTIMATDTAQQSTVPTS-----------KANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTV 107
Cdd:PHA03307   45 SDSAELAAVTVVA--GAAACDRFEPPTGPPPgpgteapanesRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPP 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   108 ARGGGSGNPTTTIESPKSTKSADTTTVATSTATAKPNTTSsqngAEDTTNSGGKSSHSVTTDLTST------------KA 175
Cdd:PHA03307  123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAV----ASDAASSRQAALPLSSPEETARapssppaepppsTP 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   176 EHLTTPHPTSPLSPRQPTSTHPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTLLETVFHHVSQ--AGLELLTS 253
Cdd:PHA03307  199 PAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRiwEASGWNGP 278
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   254 GDLPTLASQSAGITASSVISQRTQQTSSQMPASSTAPSSQETVQPTSPATALRTPTLPETMSSSPTAASTTHRYPKTPSP 333
Cdd:PHA03307  279 SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPP 358
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
33-234 3.41e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 40.12  E-value: 3.41e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202  33 NATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSkaneilaSVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGG 112
Cdd:COG3469  12 AGGASATAVTLLGAAATAASVTLTAATATTVVSTTGS-------VVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202 113 SGNPTTTieSPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTDLTSTKAEHLTTPHPTSPLSPRQP 192
Cdd:COG3469  85 AAAAATS--TSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGG 162
                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 66277202 193 TSTHPVATPTSSGHDHLMKISSSSSTVAiPGYTFTSPGMTTT 234
Cdd:COG3469 163 TTTTSTTTTTTSASTTPSATTTATATTA-SGATTPSATTTAT 203
 
Name Accession Description Interval E-value
CD34_antigen pfam06365
CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The ...
358-558 7.29e-76

CD34/Podocalyxin family; This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteriztic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion.


Pssm-ID: 461884  Cd Length: 211  Bit Score: 239.26  E-value: 7.29e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   358 VLNLTGNTLCAG--GASDEKLISLICRAVKATFNPAQDKCGIRLASVPGSQTVVVKEITIHTKLPAKDVYERLKDKWDEL 435
Cdd:pfam06365   1 ILNLNETSDCEDfkKEKGEDLLQVLCRAFSATFNSPQDVCSILLAKSEENDQCLLLTLANETGLPPKAVLELLKDKRRDL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   436 KEAGVSDMKLGDQGPPEE--AEDRFSMPLIITIVC--MASFLLLVAALYGCCHQRLSQRKDQQRLTEELQTVENGYHDNP 511
Cdd:pfam06365  81 EELGIQNFTYGTECQEEDvqSHQDYSKLTLIALVTsgILLAILLVAGYYGCLHRRRSKSKAGERLGEELQTVENGYHDNP 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 66277202   512 TLEVME-TSSEMQEK----KVVSLNGElgDSWIVPLDNLTKDDLD-EEEDTHL 558
Cdd:pfam06365 161 TLSVAPdTQSEMQEKpsvnGGAQENGT--GSWIVPLSRNGHSDRQhVEEDTHL 211
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
37-304 1.94e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 50.69  E-value: 1.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202    37 TTTDSSNKTAPTPA-SSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGN 115
Cdd:pfam05109 499 TESKAPDMTSPTSAvTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTS 578
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   116 PTTTIESPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTdltstkAEHLTTPHPTSPLSPRQPTST 195
Cdd:pfam05109 579 PTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTT------GQHNITSSSTSSMSLRPSSIS 652
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   196 HPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTlletvfHHVSQAglellTSGDLPTLASQSAGITASSVISQR 275
Cdd:pfam05109 653 ETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTST------HHVSTS-----SPAPRPGTTSQASGPGNSSTSTKP 721
                         250       260       270
                  ....*....|....*....|....*....|....
gi 66277202   276 -----TQQTSSQMPASSTAPSSQETVQPTSPATA 304
Cdd:pfam05109 722 gevnvTKGTPPKNATSPQAPSGQKTAVPTVTSTG 755
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
33-333 8.82e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 8.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202    33 NATQTTTDSSNKTAPTpassvTIMATDTAQQSTVPT-----SKANEilASVKATTLGVSSDSPGTTTLAQQVSGPVNTTV 107
Cdd:pfam05109 386 NRTFDITVSGLGTAPK-----TLIITRTATNATTTThkvifSKAPE--STTTSPTLNTTGFAAPNTTTGLPSSTHVPTNL 458
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   108 ARGGGSGNPTTTIESPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTDLTSTKAEHLTTPHPTSPL 187
Cdd:pfam05109 459 TAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPT 538
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   188 -------------SPRQPTSTHPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTLLETVFHHVSQAGLELLTSG 254
Cdd:pfam05109 539 lgktsptsavttpTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVV 618
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   255 DLPTLASQSAGITASSVISQRTQQTSSQMPAS---STAPSSQETVQPTSPATALRTPTLPETMSS-SPTAASTTHRYPKT 330
Cdd:pfam05109 619 TSPPKNATSAVTTGQHNITSSSTSSMSLRPSSiseTLSPSTSDNSTSHMPLLTSAHPTGGENITQvTPASTSTHHVSTSS 698

                  ...
gi 66277202   331 PSP 333
Cdd:pfam05109 699 PAP 701
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
39-333 6.23e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.85  E-value: 6.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202    39 TDSSNKTAPTPASsvTIMATDTAQQSTVPTS-----------KANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTV 107
Cdd:PHA03307   45 SDSAELAAVTVVA--GAAACDRFEPPTGPPPgpgteapanesRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPP 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   108 ARGGGSGNPTTTIESPKSTKSADTTTVATSTATAKPNTTSsqngAEDTTNSGGKSSHSVTTDLTST------------KA 175
Cdd:PHA03307  123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAV----ASDAASSRQAALPLSSPEETARapssppaepppsTP 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   176 EHLTTPHPTSPLSPRQPTSTHPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTLLETVFHHVSQ--AGLELLTS 253
Cdd:PHA03307  199 PAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRiwEASGWNGP 278
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202   254 GDLPTLASQSAGITASSVISQRTQQTSSQMPASSTAPSSQETVQPTSPATALRTPTLPETMSSSPTAASTTHRYPKTPSP 333
Cdd:PHA03307  279 SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPP 358
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
33-234 3.41e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 40.12  E-value: 3.41e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202  33 NATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSkaneilaSVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGG 112
Cdd:COG3469  12 AGGASATAVTLLGAAATAASVTLTAATATTVVSTTGS-------VVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202 113 SGNPTTTieSPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTDLTSTKAEHLTTPHPTSPLSPRQP 192
Cdd:COG3469  85 AAAAATS--TSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGG 162
                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 66277202 193 TSTHPVATPTSSGHDHLMKISSSSSTVAiPGYTFTSPGMTTT 234
Cdd:COG3469 163 TTTTSTTTTTTSASTTPSATTTATATTA-SGATTPSATTTAT 203
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
32-203 9.59e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 38.58  E-value: 9.59e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202  32 QNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKANeiLASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGG 111
Cdd:COG3469  33 TLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATS--STTSTTATATAAAAAATSTSATLVATSTASGANTGTS 110
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66277202 112 GSGNPTTTIESPKSTKSADTTTVATSTATAkPNTTSSQNGAEDTTNSGGKSSHSVTTDLTSTKAEHLTTPHPTSPLSPRQ 191
Cdd:COG3469 111 TVTTTSTGAGSVTSTTSSTAGSTTTSGASA-TSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTPSATTTATATT 189
                       170
                ....*....|..
gi 66277202 192 PTSTHPVATPTS 203
Cdd:COG3469 190 ASGATTPSATTT 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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