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Conserved domains on  [gi|68341949|ref|NP_001020306|]
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keratin associated protein 1-5 [Rattus norvegicus]

Protein Classification

Keratin_B2 domain-containing protein( domain architecture ID 12021880)

Keratin_B2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Keratin_B2 pfam01500
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 1-111 6.05e-24

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


:

Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 89.85  E-value: 6.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 68341949     1 MACCSTSFCGFPTCSTGGTCGSSCFQPSCCETSCFQPSCCETGYGIGGGIGYGLE------------------------- 55
Cdd:pfam01500   1 MACCGTSFCGFPTCSTGGTCGSGCCQPCCCQSSCCRPSCCQTSCCQPTTFQSSCCrptcqpccqtsccqptccqtsscqt 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 68341949    56 ----------GGSGAVNYRVRWCRPDCRVEGTSLPPCCVVSCIPPTCCQLHHAQASCCRPSYCGQS 111
Cdd:pfam01500  81 gcggigygqeGSSGAVSSRTRWCRPDCRVEGTCLPPCCVVSCTPPTCCQLHHAQASCCRPSYCGQS 146
 
Name Accession Description Interval E-value
Keratin_B2 pfam01500
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 1-111 6.05e-24

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 89.85  E-value: 6.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 68341949     1 MACCSTSFCGFPTCSTGGTCGSSCFQPSCCETSCFQPSCCETGYGIGGGIGYGLE------------------------- 55
Cdd:pfam01500   1 MACCGTSFCGFPTCSTGGTCGSGCCQPCCCQSSCCRPSCCQTSCCQPTTFQSSCCrptcqpccqtsccqptccqtsscqt 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 68341949    56 ----------GGSGAVNYRVRWCRPDCRVEGTSLPPCCVVSCIPPTCCQLHHAQASCCRPSYCGQS 111
Cdd:pfam01500  81 gcggigygqeGSSGAVSSRTRWCRPDCRVEGTCLPPCCVVSCTPPTCCQLHHAQASCCRPSYCGQS 146
 
Name Accession Description Interval E-value
Keratin_B2 pfam01500
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 1-111 6.05e-24

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 89.85  E-value: 6.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 68341949     1 MACCSTSFCGFPTCSTGGTCGSSCFQPSCCETSCFQPSCCETGYGIGGGIGYGLE------------------------- 55
Cdd:pfam01500   1 MACCGTSFCGFPTCSTGGTCGSGCCQPCCCQSSCCRPSCCQTSCCQPTTFQSSCCrptcqpccqtsccqptccqtsscqt 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 68341949    56 ----------GGSGAVNYRVRWCRPDCRVEGTSLPPCCVVSCIPPTCCQLHHAQASCCRPSYCGQS 111
Cdd:pfam01500  81 gcggigygqeGSSGAVSSRTRWCRPDCRVEGTCLPPCCVVSCTPPTCCQLHHAQASCCRPSYCGQS 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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