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Conserved domains on  [gi|71043782|ref|NP_001020916|]
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AN1-type zinc finger protein 2B [Rattus norvegicus]

Protein Classification

zf-AN1 and UIM domain-containing protein( domain architecture ID 10477532)

zf-AN1 and UIM domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-AN1 pfam01428
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 100-136 3.98e-10

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues.


:

Pssm-ID: 460208  Cd Length: 37  Bit Score: 53.85  E-value: 3.98e-10
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 71043782   100 CERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHDCSG 136
Cdd:pfam01428   1 CSFKGCKKKDFLPFKCRFCGKNFCLKHRLPEDHDCSG 37
zf-AN1 pfam01428
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 10-46 4.26e-08

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues.


:

Pssm-ID: 460208  Cd Length: 37  Bit Score: 48.07  E-value: 4.26e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 71043782    10 CSEPSCQRLDFLPLKCDACSGIFCADHVAYAHHHCGS 46
Cdd:pfam01428   1 CSFKGCKKKDFLPFKCRFCGKNFCLKHRLPEDHDCSG 37
UIM pfam02809
Ubiquitin interaction motif; This motif is called the ubiquitin interaction motif. One of the ...
 197-213 1.66e-03

Ubiquitin interaction motif; This motif is called the ubiquitin interaction motif. One of the proteins containing this motif is a receptor for poly-ubiquitination chains for the proteasome. This motif has a pattern of conservation characteriztic of an alpha helix.


:

Pssm-ID: 460703  Cd Length: 17  Bit Score: 35.05  E-value: 1.66e-03
                          10
                  ....*....|....*..
gi 71043782   197 SEDEALQRALELSLAEA 213
Cdd:pfam02809   1 DEDEDLQRALALSLQEA 17
 
Name Accession Description Interval E-value
zf-AN1 pfam01428
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 100-136 3.98e-10

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues.


Pssm-ID: 460208  Cd Length: 37  Bit Score: 53.85  E-value: 3.98e-10
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 71043782   100 CERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHDCSG 136
Cdd:pfam01428   1 CSFKGCKKKDFLPFKCRFCGKNFCLKHRLPEDHDCSG 37
zf-AN1 pfam01428
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 10-46 4.26e-08

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues.


Pssm-ID: 460208  Cd Length: 37  Bit Score: 48.07  E-value: 4.26e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 71043782    10 CSEPSCQRLDFLPLKCDACSGIFCADHVAYAHHHCGS 46
Cdd:pfam01428   1 CSFKGCKKKDFLPFKCRFCGKNFCLKHRLPEDHDCSG 37
ZnF_AN1 smart00154
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 103-137 1.09e-03

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.


Pssm-ID: 197545  Cd Length: 39  Bit Score: 35.83  E-value: 1.09e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 71043782    103 SGCRQRE-MMKLTCDRCGRNFCIKHRHPLDHDCSGE 137
Cdd:smart00154   2 HFCRKKVgLTGFKCRHCGNLFCGEHRLPEDHDCPGD 37
UIM pfam02809
Ubiquitin interaction motif; This motif is called the ubiquitin interaction motif. One of the ...
 197-213 1.66e-03

Ubiquitin interaction motif; This motif is called the ubiquitin interaction motif. One of the proteins containing this motif is a receptor for poly-ubiquitination chains for the proteasome. This motif has a pattern of conservation characteriztic of an alpha helix.


Pssm-ID: 460703  Cd Length: 17  Bit Score: 35.05  E-value: 1.66e-03
                          10
                  ....*....|....*..
gi 71043782   197 SEDEALQRALELSLAEA 213
Cdd:pfam02809   1 DEDEDLQRALALSLQEA 17
UIM smart00726
Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated ...
 197-216 6.01e-03

Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated proteins.


Pssm-ID: 197845  Cd Length: 20  Bit Score: 33.27  E-value: 6.01e-03
                           10        20
                   ....*....|....*....|
gi 71043782    197 SEDEALQRALELSLAEAKPQ 216
Cdd:smart00726   1 DEDEDLQRALELSLQEAEES 20
 
Name Accession Description Interval E-value
zf-AN1 pfam01428
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 100-136 3.98e-10

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues.


Pssm-ID: 460208  Cd Length: 37  Bit Score: 53.85  E-value: 3.98e-10
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 71043782   100 CERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHDCSG 136
Cdd:pfam01428   1 CSFKGCKKKDFLPFKCRFCGKNFCLKHRLPEDHDCSG 37
zf-AN1 pfam01428
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 10-46 4.26e-08

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues.


Pssm-ID: 460208  Cd Length: 37  Bit Score: 48.07  E-value: 4.26e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 71043782    10 CSEPSCQRLDFLPLKCDACSGIFCADHVAYAHHHCGS 46
Cdd:pfam01428   1 CSFKGCKKKDFLPFKCRFCGKNFCLKHRLPEDHDCSG 37
ZnF_AN1 smart00154
AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in ...
 103-137 1.09e-03

AN1-like Zinc finger; Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.


Pssm-ID: 197545  Cd Length: 39  Bit Score: 35.83  E-value: 1.09e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 71043782    103 SGCRQRE-MMKLTCDRCGRNFCIKHRHPLDHDCSGE 137
Cdd:smart00154   2 HFCRKKVgLTGFKCRHCGNLFCGEHRLPEDHDCPGD 37
UIM pfam02809
Ubiquitin interaction motif; This motif is called the ubiquitin interaction motif. One of the ...
 197-213 1.66e-03

Ubiquitin interaction motif; This motif is called the ubiquitin interaction motif. One of the proteins containing this motif is a receptor for poly-ubiquitination chains for the proteasome. This motif has a pattern of conservation characteriztic of an alpha helix.


Pssm-ID: 460703  Cd Length: 17  Bit Score: 35.05  E-value: 1.66e-03
                          10
                  ....*....|....*..
gi 71043782   197 SEDEALQRALELSLAEA 213
Cdd:pfam02809   1 DEDEDLQRALALSLQEA 17
UIM smart00726
Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated ...
 197-216 6.01e-03

Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated proteins.


Pssm-ID: 197845  Cd Length: 20  Bit Score: 33.27  E-value: 6.01e-03
                           10        20
                   ....*....|....*....|
gi 71043782    197 SEDEALQRALELSLAEAKPQ 216
Cdd:smart00726   1 DEDEDLQRALELSLQEAEES 20
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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