NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|115532122|ref|NP_001023203|]
View 

Peptidase M13 N-terminal domain-containing protein [Caenorhabditis elegans]

Protein Classification

gluzincin family metallopeptidase( domain architecture ID 55759)

gluzincin family metallopeptidase is a zinc-dependent peptidase that contains an HEXXH motif as part of its active site; it binds a single catalytic zinc ion which is tetrahedrally coordinated by three amino acid ligands and a water molecule that forms the nucleophile upon activation during catalysis

Gene Ontology:  GO:0008237|GO:0008270
PubMed:  7674922
SCOP:  3001975

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
GluZincin super family cl14813
Gluzincin Peptidase family (thermolysin-like proteinases, TLPs) which includes peptidases M1, ...
254-725 1.41e-33

Gluzincin Peptidase family (thermolysin-like proteinases, TLPs) which includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); The Gluzincin family (thermolysin-like peptidases or TLPs) includes several zinc-dependent metallopeptidases such as M1, M2, M3, M4, M13, M32, M36 peptidases (MEROPS classification), which contain the HEXXH motif as part of their active site. Peptidases in this family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. The M1 family includes aminopeptidase N (APN) and leukotriene A4 hydrolase (LTA4H). APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and is present in a variety of human tissues and cell types. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity such that the two activities occupy different, but overlapping sites. The M3_like peptidases include the M2_ACE, M3 or neurolysin-like family (subfamilies M3B_PepF and M3A) and M32_Taq peptidases. The M2 peptidase angiotensin converting enzyme (ACE, EC 3.4.15.1) catalyzes the conversion of decapeptide angiotensin I to the potent vasopressor octapeptide angiotensin II. ACE is a key component of the renin-angiotensin system that regulates blood pressure, thus ACE inhibitors are important for the treatment of hypertension. M3A includes thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (3.4.24.16), and the mitochondrial intermediate peptidase; and M3B includes oligopeptidase F. The M32 family includes eukaryotic enzymes from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and from Leishmania major, a parasite that causes leishmaniasis, making these enzymes attractive targets for drug development. The M4 family includes secreted protease thermolysin (EC 3.4.24.27), pseudolysin, aureolysin, and neutral protease as well as bacillolysin (EC 3.4.24.28) that degrade extracellular proteins and peptides for bacterial nutrition, especially prior to sporulation. Thermolysin is widely used as a nonspecific protease to obtain fragments for peptide sequencing as well as in production of the artificial sweetener aspartame. The M13 family includes neprilysin (EC 3.4.24.11) and endothelin-converting enzyme I (ECE-1, EC 3.4.24.71), which fulfill a broad range of physiological roles due to the greater variation in the S2' subsite allowing substrate specificity and are prime therapeutic targets for selective inhibition. The peptidase M36 fungalysin family includes endopeptidases from pathogenic fungi. Fungalysin hydrolyzes extracellular matrix proteins such as elastin and keratin. Aspergillus fumigatus causes the pulmonary disease aspergillosis by invading the lungs of immuno-compromised animals and secreting fungalysin that possibly breaks down proteinaceous structural barriers.


The actual alignment was detected with superfamily member cd08662:

Pssm-ID: 472708 [Multi-domain]  Cd Length: 642  Bit Score: 137.88  E-value: 1.41e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 254 IEPCENFYRYSCQRY---HSQTADK-QMSFLSQLKDESLRRMHSLLSSEEDSRLLPKSARLSRSLYSACMNAVLRSSNAP 329
Cdd:cd08662    1 VDPCDDFYQYACGNWlknHPIPADKsSWGSFSELQDRNEEQLREILEEAASSAADSSAEQKAKDFYKSCMDEEAIEKLGL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 330 TDLLTFIRNFPCGPLLRDcqnfhadsYSWERHAGMLDWYaGRYNLIVYDRDVHPQDRSKIILQIKPPDLtpivGLIERDL 409
Cdd:cd08662   81 KPLKPLLDKIGGLPSLDD--------LAAELLLALLRRL-GVSLLFGLGVSPDPKNSSRNILYLGQPGL----GLPDRDY 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 410 IDLARPSPTefepllqLSLRQNLLSAFARDsLLRDPRDVQSQLDEVARLMVDLY-ISARQSASLTPNTTY--MTIGEMFQ 486
Cdd:cd08662  148 YLDEENAEI-------REAYKKYIAKLLEL-LGADEEEAEKLAEDVLAFETELAkISLSSEELRDPEKTYnpLTLAELQK 219
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 487 ALPQLYLREFLDAQLSNTyrwTETDMLSIQDYDYFARLSDIMAQTSRQAVANYLLTVTVWNLKQY-SYSPRDQYG----- 560
Cdd:cd08662  220 LAPSIDWKAYLKALGPPA---DDPDKVIVSQPEYLKKLDKLLASTPLRTLKNYLIWRLLDSLAPYlSKEFRDARFfygka 296
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 561 ----------WRECVDQISS---FEIGRkMYVDKASQTIDLPKIQEFLQNLKIDFL-SVHRSTplqYLSN---------I 617
Cdd:cd08662  297 lsgqkepeprWKRCVELVNGalgEALGR-LYVEKYFSEEAKADVEEMVENIKEAFKeRLENLD---WMDEetkkkalekL 372
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 618 NRLGFYVGFPRRLQNEELIwKPVSQVSLNETDYFDSMIRVGKAERDYTMSQIGTYLDNDDTTTFPIS-----DPTMlyNS 692
Cdd:cd08662  373 DAMKVKIGYPDKWRDYSAL-DIYYDDLNVSDSYFENVLRLLRFETKRQLAKLGKPVDRTEWSMSPQTvnayyNPSL--NE 449
                        490       500       510
                 ....*....|....*....|....*....|...
gi 115532122 693 nvgaIVIPLAFIEPPIYlpGDEVPMYGIYSSLG 725
Cdd:cd08662  450 ----IVFPAGILQPPFF--DPDAPDALNYGGIG 476
 
Name Accession Description Interval E-value
M13 cd08662
Peptidase family M13 includes neprilysin and endothelin-converting enzyme I; The M13 family of ...
254-725 1.41e-33

Peptidase family M13 includes neprilysin and endothelin-converting enzyme I; The M13 family of metallopeptidases includes neprilysin (neutral endopeptidase, NEP, enkephalinase, CD10, CALLA, EC 3.4.24.11), endothelin-converting enzyme I (ECE-1, EC 3.4.24.71), erythrocyte surface antigen KELL (ECE-3), phosphate-regulating gene on the X chromosome (PHEX), soluble secreted endopeptidase (SEP), and damage-induced neuronal endopeptidase (DINE)/X-converting enzyme (XCE). Proteins in this family fulfill a broad range of physiological roles due to the greater variation in the active site's S2' subsite allowing substrate specificity. NEP is expressed in a variety of tissues including kidney and brain, and is involved in many physiological and pathological processes, including blood pressure and inflammatory response. It degrades a wide array of substrates such as substance P, enkephalins, cholecystokinin, neurotensin and somatostatin. It is an important enzyme in the regulation of amyloid-beta (Abeta) protein that forms amyloid plaques that are associated with Alzeimers disease (AD). ECE-1 catalyzes the final rate-limiting step in the biosynthesis of endothelins via post-translational conversion of the biologically inactive big endothelins. Like NEP, it also hydrolyzes bradykinin, substance P, neurotensin, and Abeta. Endothelin-1 overproduction has been implicated in various diseases including stroke, asthma, hypertension, and cardiac and renal failure. Kell is a homolog of NEP and constitutes a major antigen on human erythrocytes; it preferentially cleaves big endothelin-3 to produce bioactive endothelin-3, but is also known to cleave substance P and neurokinin A. PHEX forms a complex interaction with fibroblast growth factor 23 (FGF23) and matrix extracellular phosphoglycoprotein, causing bone mineralization. A loss-of-function mutation in PHEX disrupts this interaction leading to hypophosphatemic rickets; X-linked hypophosphatemic (XLH) rickets is the most common form of metabolic rickets. ECEL1 is a brain metalloprotease which plays a critical role in the nervous regulation of the respiratory system, while DINE is abundantly expressed in the hypothalamus and its expression responds to nerve injury. A majority of these M13 proteases are prime therapeutic targets for selective inhibition.


Pssm-ID: 341056 [Multi-domain]  Cd Length: 642  Bit Score: 137.88  E-value: 1.41e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 254 IEPCENFYRYSCQRY---HSQTADK-QMSFLSQLKDESLRRMHSLLSSEEDSRLLPKSARLSRSLYSACMNAVLRSSNAP 329
Cdd:cd08662    1 VDPCDDFYQYACGNWlknHPIPADKsSWGSFSELQDRNEEQLREILEEAASSAADSSAEQKAKDFYKSCMDEEAIEKLGL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 330 TDLLTFIRNFPCGPLLRDcqnfhadsYSWERHAGMLDWYaGRYNLIVYDRDVHPQDRSKIILQIKPPDLtpivGLIERDL 409
Cdd:cd08662   81 KPLKPLLDKIGGLPSLDD--------LAAELLLALLRRL-GVSLLFGLGVSPDPKNSSRNILYLGQPGL----GLPDRDY 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 410 IDLARPSPTefepllqLSLRQNLLSAFARDsLLRDPRDVQSQLDEVARLMVDLY-ISARQSASLTPNTTY--MTIGEMFQ 486
Cdd:cd08662  148 YLDEENAEI-------REAYKKYIAKLLEL-LGADEEEAEKLAEDVLAFETELAkISLSSEELRDPEKTYnpLTLAELQK 219
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 487 ALPQLYLREFLDAQLSNTyrwTETDMLSIQDYDYFARLSDIMAQTSRQAVANYLLTVTVWNLKQY-SYSPRDQYG----- 560
Cdd:cd08662  220 LAPSIDWKAYLKALGPPA---DDPDKVIVSQPEYLKKLDKLLASTPLRTLKNYLIWRLLDSLAPYlSKEFRDARFfygka 296
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 561 ----------WRECVDQISS---FEIGRkMYVDKASQTIDLPKIQEFLQNLKIDFL-SVHRSTplqYLSN---------I 617
Cdd:cd08662  297 lsgqkepeprWKRCVELVNGalgEALGR-LYVEKYFSEEAKADVEEMVENIKEAFKeRLENLD---WMDEetkkkalekL 372
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 618 NRLGFYVGFPRRLQNEELIwKPVSQVSLNETDYFDSMIRVGKAERDYTMSQIGTYLDNDDTTTFPIS-----DPTMlyNS 692
Cdd:cd08662  373 DAMKVKIGYPDKWRDYSAL-DIYYDDLNVSDSYFENVLRLLRFETKRQLAKLGKPVDRTEWSMSPQTvnayyNPSL--NE 449
                        490       500       510
                 ....*....|....*....|....*....|...
gi 115532122 693 nvgaIVIPLAFIEPPIYlpGDEVPMYGIYSSLG 725
Cdd:cd08662  450 ----IVFPAGILQPPFF--DPDAPDALNYGGIG 476
Peptidase_M13_N pfam05649
Peptidase family M13; M13 peptidases are well-studied proteases found in a wide range of ...
256-599 1.51e-27

Peptidase family M13; M13 peptidases are well-studied proteases found in a wide range of organizms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk.


Pssm-ID: 461703  Cd Length: 382  Bit Score: 115.47  E-value: 1.51e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122  256 PCENFYRYSC---QRYHSQTADK-QMSFLSQLKDESLRRMHSLLSSEEDSRLLPKSARLSRSLYSACMNAVLRSSNAPTD 331
Cdd:pfam05649   1 PCDDFYQYACggwLKNHPIPADKsSWGTFDELRERNEKQLREILEEAAASESDPGAVEKAKDLYKSCMDTDAIEKLGLKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122  332 LLTFIRNFPcGPLLRDcqnfhaDSYSWERHAGMLDWYaGRYNLIVYDRDVHPQDRSKIILQIKPPDLtpivGLIERDLid 411
Cdd:pfam05649  81 LKPLLDEIG-GPLANK------DKFDLLETLAKLRRY-GVDSLFGFGVGPDDKNSSRNILYLDQPGL----GLPDRDY-- 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122  412 LARPSPTEFEPLLQlSLRQNLLSAFardSLLRDPRDVQSQLDEVARLMVDLyisARQSASLT----PNTTY--MTIGEMF 485
Cdd:pfam05649 147 YLKDRDEKSAEIRE-AYKAYIAKLL---TLLGASEEAAALAEEVLAFETKL---AKASLSREerrdPEKTYnpMTLAELQ 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122  486 QALPQLYLREFLDAQLSNTyrwTETDMLSIQDYDYFARLSDIMAQTSRQAVANYLLTVTVWNLKQYSYSP---------R 556
Cdd:pfam05649 220 KLAPGIDWKAYLNAAGLPD---VPSDEVIVSQPEYLKALSKLLAETPLRTLKNYLIWRLVRSLAPYLSDEfrdanfefyG 296
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 115532122  557 DQYG------WRECVDQISS---FEIGRkMYVDKASQTIDLPKIQEFLQNLK 599
Cdd:pfam05649 297 TLSGtkqrprWKRCVSLVNGllgEALGR-LYVKKYFPEEAKARVEELVENIK 347
 
Name Accession Description Interval E-value
M13 cd08662
Peptidase family M13 includes neprilysin and endothelin-converting enzyme I; The M13 family of ...
254-725 1.41e-33

Peptidase family M13 includes neprilysin and endothelin-converting enzyme I; The M13 family of metallopeptidases includes neprilysin (neutral endopeptidase, NEP, enkephalinase, CD10, CALLA, EC 3.4.24.11), endothelin-converting enzyme I (ECE-1, EC 3.4.24.71), erythrocyte surface antigen KELL (ECE-3), phosphate-regulating gene on the X chromosome (PHEX), soluble secreted endopeptidase (SEP), and damage-induced neuronal endopeptidase (DINE)/X-converting enzyme (XCE). Proteins in this family fulfill a broad range of physiological roles due to the greater variation in the active site's S2' subsite allowing substrate specificity. NEP is expressed in a variety of tissues including kidney and brain, and is involved in many physiological and pathological processes, including blood pressure and inflammatory response. It degrades a wide array of substrates such as substance P, enkephalins, cholecystokinin, neurotensin and somatostatin. It is an important enzyme in the regulation of amyloid-beta (Abeta) protein that forms amyloid plaques that are associated with Alzeimers disease (AD). ECE-1 catalyzes the final rate-limiting step in the biosynthesis of endothelins via post-translational conversion of the biologically inactive big endothelins. Like NEP, it also hydrolyzes bradykinin, substance P, neurotensin, and Abeta. Endothelin-1 overproduction has been implicated in various diseases including stroke, asthma, hypertension, and cardiac and renal failure. Kell is a homolog of NEP and constitutes a major antigen on human erythrocytes; it preferentially cleaves big endothelin-3 to produce bioactive endothelin-3, but is also known to cleave substance P and neurokinin A. PHEX forms a complex interaction with fibroblast growth factor 23 (FGF23) and matrix extracellular phosphoglycoprotein, causing bone mineralization. A loss-of-function mutation in PHEX disrupts this interaction leading to hypophosphatemic rickets; X-linked hypophosphatemic (XLH) rickets is the most common form of metabolic rickets. ECEL1 is a brain metalloprotease which plays a critical role in the nervous regulation of the respiratory system, while DINE is abundantly expressed in the hypothalamus and its expression responds to nerve injury. A majority of these M13 proteases are prime therapeutic targets for selective inhibition.


Pssm-ID: 341056 [Multi-domain]  Cd Length: 642  Bit Score: 137.88  E-value: 1.41e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 254 IEPCENFYRYSCQRY---HSQTADK-QMSFLSQLKDESLRRMHSLLSSEEDSRLLPKSARLSRSLYSACMNAVLRSSNAP 329
Cdd:cd08662    1 VDPCDDFYQYACGNWlknHPIPADKsSWGSFSELQDRNEEQLREILEEAASSAADSSAEQKAKDFYKSCMDEEAIEKLGL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 330 TDLLTFIRNFPCGPLLRDcqnfhadsYSWERHAGMLDWYaGRYNLIVYDRDVHPQDRSKIILQIKPPDLtpivGLIERDL 409
Cdd:cd08662   81 KPLKPLLDKIGGLPSLDD--------LAAELLLALLRRL-GVSLLFGLGVSPDPKNSSRNILYLGQPGL----GLPDRDY 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 410 IDLARPSPTefepllqLSLRQNLLSAFARDsLLRDPRDVQSQLDEVARLMVDLY-ISARQSASLTPNTTY--MTIGEMFQ 486
Cdd:cd08662  148 YLDEENAEI-------REAYKKYIAKLLEL-LGADEEEAEKLAEDVLAFETELAkISLSSEELRDPEKTYnpLTLAELQK 219
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 487 ALPQLYLREFLDAQLSNTyrwTETDMLSIQDYDYFARLSDIMAQTSRQAVANYLLTVTVWNLKQY-SYSPRDQYG----- 560
Cdd:cd08662  220 LAPSIDWKAYLKALGPPA---DDPDKVIVSQPEYLKKLDKLLASTPLRTLKNYLIWRLLDSLAPYlSKEFRDARFfygka 296
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 561 ----------WRECVDQISS---FEIGRkMYVDKASQTIDLPKIQEFLQNLKIDFL-SVHRSTplqYLSN---------I 617
Cdd:cd08662  297 lsgqkepeprWKRCVELVNGalgEALGR-LYVEKYFSEEAKADVEEMVENIKEAFKeRLENLD---WMDEetkkkalekL 372
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122 618 NRLGFYVGFPRRLQNEELIwKPVSQVSLNETDYFDSMIRVGKAERDYTMSQIGTYLDNDDTTTFPIS-----DPTMlyNS 692
Cdd:cd08662  373 DAMKVKIGYPDKWRDYSAL-DIYYDDLNVSDSYFENVLRLLRFETKRQLAKLGKPVDRTEWSMSPQTvnayyNPSL--NE 449
                        490       500       510
                 ....*....|....*....|....*....|...
gi 115532122 693 nvgaIVIPLAFIEPPIYlpGDEVPMYGIYSSLG 725
Cdd:cd08662  450 ----IVFPAGILQPPFF--DPDAPDALNYGGIG 476
Peptidase_M13_N pfam05649
Peptidase family M13; M13 peptidases are well-studied proteases found in a wide range of ...
256-599 1.51e-27

Peptidase family M13; M13 peptidases are well-studied proteases found in a wide range of organizms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk.


Pssm-ID: 461703  Cd Length: 382  Bit Score: 115.47  E-value: 1.51e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122  256 PCENFYRYSC---QRYHSQTADK-QMSFLSQLKDESLRRMHSLLSSEEDSRLLPKSARLSRSLYSACMNAVLRSSNAPTD 331
Cdd:pfam05649   1 PCDDFYQYACggwLKNHPIPADKsSWGTFDELRERNEKQLREILEEAAASESDPGAVEKAKDLYKSCMDTDAIEKLGLKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122  332 LLTFIRNFPcGPLLRDcqnfhaDSYSWERHAGMLDWYaGRYNLIVYDRDVHPQDRSKIILQIKPPDLtpivGLIERDLid 411
Cdd:pfam05649  81 LKPLLDEIG-GPLANK------DKFDLLETLAKLRRY-GVDSLFGFGVGPDDKNSSRNILYLDQPGL----GLPDRDY-- 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122  412 LARPSPTEFEPLLQlSLRQNLLSAFardSLLRDPRDVQSQLDEVARLMVDLyisARQSASLT----PNTTY--MTIGEMF 485
Cdd:pfam05649 147 YLKDRDEKSAEIRE-AYKAYIAKLL---TLLGASEEAAALAEEVLAFETKL---AKASLSREerrdPEKTYnpMTLAELQ 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532122  486 QALPQLYLREFLDAQLSNTyrwTETDMLSIQDYDYFARLSDIMAQTSRQAVANYLLTVTVWNLKQYSYSP---------R 556
Cdd:pfam05649 220 KLAPGIDWKAYLNAAGLPD---VPSDEVIVSQPEYLKALSKLLAETPLRTLKNYLIWRLVRSLAPYLSDEfrdanfefyG 296
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 115532122  557 DQYG------WRECVDQISS---FEIGRkMYVDKASQTIDLPKIQEFLQNLK 599
Cdd:pfam05649 297 TLSGtkqrprWKRCVSLVNGllgEALGR-LYVKKYFPEEAKARVEELVENIK 347
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH