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Conserved domains on  [gi|71991856|ref|NP_001023311|]
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Kinesin-like protein [Caenorhabditis elegans]

Protein Classification

kinesin-like protein KIF23; myosin/kinesin family protein( domain architecture ID 11033826)

kinesin-like protein KIF23 is essential for cytokinesis in Rho-mediated signaling; it has an N-terminal motor domain and is a (+) end-directed motor| myosin/kinesin family protein; contains an ATPase-containing motor domain found in myosins and kinesins, which provides the driving force in myosin and kinesin mediated processes; may have a coiled-coil segment C-terminal to the motor domain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Motor_domain super family cl22853
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
26-426 1.46e-121

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


The actual alignment was detected with superfamily member cd01368:

Pssm-ID: 473979 [Multi-domain]  Cd Length: 345  Bit Score: 368.65  E-value: 1.46e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  26 DSIEVVCRLCPYtgSTPSLIAIDEGSI-----QTVL--PPAQFR----RENAPQVEKVFRFGRVFSENDGQATVFERTSV 94
Cdd:cd01368   1 DPVKVYLRVRPL--SKDELESEDEGCIevinsTTVVlhPPKGSAanksERNGGQKETKFSFSKVFGPNTTQKEFFQGTAL 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  95 DLILNLLKGQNSLLFTYGVTGSGKTYTMTGkpTETGTGLLPRTLDVIFNSInnrvekcifypsalntfeiratldahlkr 174
Cdd:cd01368  79 PLVQDLLHGKNGLLFTYGVTNSGKTYTMQG--SPGDGGILPRSLDVIFNSI----------------------------- 127
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 175 hqmaadrlstsreitdryceaiklSGYnddmvcSVFVTYVEIYNNYCYDLLEDA-RNGSRVLTKREIRHDRQQQMYVDGA 253
Cdd:cd01368 128 ------------------------GGY------SVFVSYIEIYNEYIYDLLEPSpSSPTKKRQSLRLREDHNGNMYVAGL 177
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 254 KDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRAyETKSVypTMDSSQIIVSQLCLVDLAGSER 333
Cdd:cd01368 178 TEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLVQAPGD-SDGDV--DQDKDQITVSQLSLVDLAGSER 254
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 334 AKRTQNVGERLAEANSINQSLMTLRQCIEVLRRNQKSSSQNLeqVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYD 413
Cdd:cd01368 255 TSRTQNTGERLKEAGNINTSLMTLGTCIEVLRENQLQGTNKM--VPFRDSKLTHLFQNYFDGEGKASMIVNVNPCASDYD 332
                       410
                ....*....|...
gi 71991856 414 ENMSALAFAEESQ 426
Cdd:cd01368 333 ETLHVMKFSAIAQ 345
MKLP1_Arf_bdg pfam16540
Arf6-interacting domain of mitotic kinesin-like protein 1; This family is a C-terminal region ...
673-776 1.13e-42

Arf6-interacting domain of mitotic kinesin-like protein 1; This family is a C-terminal region of mitotic kinesin-like proteins that is necessary for the interaction with the small GTPase Arf6. MKLP1 is a Flemming body-localising protein essential for cytokinesis, so its interaction with Arf6 shows how Arf6 is involved in cytokinesis. The Arf6-MKLP1 complex plays a crucial role in cytokinesis by connecting the microtubule bundle and membranes at the cleavage plane.


:

Pssm-ID: 465166  Cd Length: 107  Bit Score: 150.15  E-value: 1.13e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   673 YVNPKYqRRSKSA-SRLLDHQPLHRVPTGTVLQSRTPA--NAIRTTKPEMHQLNKSGEYRLTHQEVDDEGNISTNIVKGN 749
Cdd:pfam16540   2 VVNPRH-RRSRSAgERWLDHKPPSNVPTGTILQPRIPNrkSVTKLTKPKDKALAKASKYCLTHQEQDSDGEIETKLYKGD 80
                          90       100
                  ....*....|....*....|....*..
gi 71991856   750 VIPTVSGGTAVFFNDIERLTHESPSTR 776
Cdd:pfam16540  81 VIPTRGGGAQVQFNDIETLKQESPTGS 107
 
Name Accession Description Interval E-value
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
26-426 1.46e-121

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 368.65  E-value: 1.46e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  26 DSIEVVCRLCPYtgSTPSLIAIDEGSI-----QTVL--PPAQFR----RENAPQVEKVFRFGRVFSENDGQATVFERTSV 94
Cdd:cd01368   1 DPVKVYLRVRPL--SKDELESEDEGCIevinsTTVVlhPPKGSAanksERNGGQKETKFSFSKVFGPNTTQKEFFQGTAL 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  95 DLILNLLKGQNSLLFTYGVTGSGKTYTMTGkpTETGTGLLPRTLDVIFNSInnrvekcifypsalntfeiratldahlkr 174
Cdd:cd01368  79 PLVQDLLHGKNGLLFTYGVTNSGKTYTMQG--SPGDGGILPRSLDVIFNSI----------------------------- 127
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 175 hqmaadrlstsreitdryceaiklSGYnddmvcSVFVTYVEIYNNYCYDLLEDA-RNGSRVLTKREIRHDRQQQMYVDGA 253
Cdd:cd01368 128 ------------------------GGY------SVFVSYIEIYNEYIYDLLEPSpSSPTKKRQSLRLREDHNGNMYVAGL 177
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 254 KDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRAyETKSVypTMDSSQIIVSQLCLVDLAGSER 333
Cdd:cd01368 178 TEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLVQAPGD-SDGDV--DQDKDQITVSQLSLVDLAGSER 254
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 334 AKRTQNVGERLAEANSINQSLMTLRQCIEVLRRNQKSSSQNLeqVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYD 413
Cdd:cd01368 255 TSRTQNTGERLKEAGNINTSLMTLGTCIEVLRENQLQGTNKM--VPFRDSKLTHLFQNYFDGEGKASMIVNVNPCASDYD 332
                       410
                ....*....|...
gi 71991856 414 ENMSALAFAEESQ 426
Cdd:cd01368 333 ETLHVMKFSAIAQ 345
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
27-434 1.22e-116

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 355.73  E-value: 1.22e-116
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856     27 SIEVVCRLCPYTGST-----PSLIAIDEGSIQTVLppaqFRRENAPQVEKVFRFGRVFSENDGQATVFERTSVDLILNLL 101
Cdd:smart00129   1 NIRVVVRVRPLNKREksrksPSVVPFPDKVGKTLT----VRSPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVL 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    102 KGQNSLLFTYGVTGSGKTYTMTGKPTETGtgLLPRTLDVIFNSINNRvekcifypsalntfeiratldahlkrhqmaadr 181
Cdd:smart00129  77 EGYNATIFAYGQTGSGKTYTMIGTPDSPG--IIPRALKDLFEKIDKR--------------------------------- 121
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    182 lstsreitdryceaiklsgyNDDMVCSVFVTYVEIYNNYCYDLLEDARNgsrvltKREIRHDRQQQMYVDGAKDVEVSSS 261
Cdd:smart00129 122 --------------------EEGWQFSVKVSYLEIYNEKIRDLLNPSSK------KLEIREDEKGGVYVKGLTEISVSSF 175
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    262 EEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRayetksvypTMDSSQIIVSQLCLVDLAGSERAKRTQNVG 341
Cdd:smart00129 176 EEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIK---------NSSSGSGKASKLNLVDLAGSERAKKTGAEG 246
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    342 ERLAEANSINQSLMTLRQCIEVLRRNQKSSsqnleQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSALAF 421
Cdd:smart00129 247 DRLKEAGNINKSLSALGNVINALAQHSKSR-----HIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSSSNLEETLSTLRF 321
                          410
                   ....*....|...
gi 71991856    422 AEESQTIEVKKQV 434
Cdd:smart00129 322 ASRAKEIKNKPIV 334
Kinesin pfam00225
Kinesin motor domain;
70-428 7.54e-100

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 311.81  E-value: 7.54e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    70 EKVFRFGRVFSENDGQATVFERTSVDLILNLLKGQNSLLFTYGVTGSGKTYTMTGKPTETGtgLLPRTLDVIFNSINNRV 149
Cdd:pfam00225  39 TKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPG--IIPRALEDLFDRIQKTK 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   150 EKCIFypsalntfeiratldahlkrhqmaadrlstsreitdryceaiklsgynddmvcSVFVTYVEIYNNYCYDLLEDAR 229
Cdd:pfam00225 117 ERSEF-----------------------------------------------------SVKVSYLEIYNEKIRDLLSPSN 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   230 NGSRVLtkrEIRHDRQQQMYVDGAKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRAyetksv 309
Cdd:pfam00225 144 KNKRKL---RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRS------ 214
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   310 ypTMDSSQIIVSQLCLVDLAGSERAKRTQNV-GERLAEANSINQSLMTLRQCIEVLRRNQKSSsqnleqVPYRQSKLTHL 388
Cdd:pfam00225 215 --TGGEESVKTGKLNLVDLAGSERASKTGAAgGQRLKEAANINKSLSALGNVISALADKKSKH------IPYRDSKLTRL 286
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 71991856   389 FKNYLEGNGKIRMVICVNPKPDDYDENMSALAFAEESQTI 428
Cdd:pfam00225 287 LQDSLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI 326
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
68-435 1.47e-55

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 200.74  E-value: 1.47e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  68 QVEKVFRFGRVFSENDGQATVFERTSVDLILNLLKGQNSLLFTYGVTGSGKTYTMTGkpTETGTGLLPRTLDVIFnsinn 147
Cdd:COG5059  53 SKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSG--TEEEPGIIPLSLKELF----- 125
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 148 rvekcifypsalntfeiratldahlkrhqmaaDRLSTSREITDRyceAIKLSgynddmvcsvfvtYVEIYNNYCYDLLED 227
Cdd:COG5059 126 --------------------------------SKLEDLSMTKDF---AVSIS-------------YLEIYNEKIYDLLSP 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 228 ARNGSRvltkreIRHDRQQQMYVDGAKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIklvmaprayETK 307
Cdd:COG5059 158 NEESLN------IREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQI---------ELA 222
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 308 SVYPTMDSSQIivSQLCLVDLAGSERAKRTQNVGERLAEANSINQSLMTLRQCIEVLRRNQKSSSqnleqVPYRQSKLTH 387
Cdd:COG5059 223 SKNKVSGTSET--SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGH-----IPYRESKLTR 295
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*...
gi 71991856 388 LFKNYLEGNGKIRMVICVNPKPDDYDENMSALAFAEESQTIEVKKQVE 435
Cdd:COG5059 296 LLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVN 343
MKLP1_Arf_bdg pfam16540
Arf6-interacting domain of mitotic kinesin-like protein 1; This family is a C-terminal region ...
673-776 1.13e-42

Arf6-interacting domain of mitotic kinesin-like protein 1; This family is a C-terminal region of mitotic kinesin-like proteins that is necessary for the interaction with the small GTPase Arf6. MKLP1 is a Flemming body-localising protein essential for cytokinesis, so its interaction with Arf6 shows how Arf6 is involved in cytokinesis. The Arf6-MKLP1 complex plays a crucial role in cytokinesis by connecting the microtubule bundle and membranes at the cleavage plane.


Pssm-ID: 465166  Cd Length: 107  Bit Score: 150.15  E-value: 1.13e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   673 YVNPKYqRRSKSA-SRLLDHQPLHRVPTGTVLQSRTPA--NAIRTTKPEMHQLNKSGEYRLTHQEVDDEGNISTNIVKGN 749
Cdd:pfam16540   2 VVNPRH-RRSRSAgERWLDHKPPSNVPTGTILQPRIPNrkSVTKLTKPKDKALAKASKYCLTHQEQDSDGEIETKLYKGD 80
                          90       100
                  ....*....|....*....|....*..
gi 71991856   750 VIPTVSGGTAVFFNDIERLTHESPSTR 776
Cdd:pfam16540  81 VIPTRGGGAQVQFNDIETLKQESPTGS 107
PLN03188 PLN03188
kinesin-12 family protein; Provisional
70-465 2.01e-35

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 145.08  E-value: 2.01e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    70 EKVFRFGRVFSENDGQATVFERTSVDLILNLLKGQNSLLFTYGVTGSGKTYTMTGKptetGTGLLPRTLDVIFNSINNRV 149
Cdd:PLN03188  131 GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGP----ANGLLEEHLSGDQQGLTPRV 206
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   150 EKCIFypSALNTFEIRATlDAHLKRHqmaadrlstsreitdryCEaiklsgynddmvCSvfvtYVEIYNNYCYDLLEDA- 228
Cdd:PLN03188  207 FERLF--ARINEEQIKHA-DRQLKYQ-----------------CR------------CS----FLEIYNEQITDLLDPSq 250
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   229 RNgsrvltkREIRHDRQQQMYVDGAKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIklVMAPRAyetKS 308
Cdd:PLN03188  251 KN-------LQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTC--VVESRC---KS 318
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   309 VYPTMDSSQiiVSQLCLVDLAGSERAKRTQNVGERLAEANSINQSLMTLRQCIEVLRRNQKSSSQnlEQVPYRQSKLTHL 388
Cdd:PLN03188  319 VADGLSSFK--TSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQ--RHIPYRDSRLTFL 394
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71991856   389 FKNYLEGNGKIRMVICVNPKPDDYDENMSALAFAEESQTIEVKKQVERMPSERIPH--SFFTQWNSELDgsvRMEDDGS 465
Cdd:PLN03188  395 LQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFlrEVIRQLRDELQ---RVKANGN 470
 
Name Accession Description Interval E-value
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
26-426 1.46e-121

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 368.65  E-value: 1.46e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  26 DSIEVVCRLCPYtgSTPSLIAIDEGSI-----QTVL--PPAQFR----RENAPQVEKVFRFGRVFSENDGQATVFERTSV 94
Cdd:cd01368   1 DPVKVYLRVRPL--SKDELESEDEGCIevinsTTVVlhPPKGSAanksERNGGQKETKFSFSKVFGPNTTQKEFFQGTAL 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  95 DLILNLLKGQNSLLFTYGVTGSGKTYTMTGkpTETGTGLLPRTLDVIFNSInnrvekcifypsalntfeiratldahlkr 174
Cdd:cd01368  79 PLVQDLLHGKNGLLFTYGVTNSGKTYTMQG--SPGDGGILPRSLDVIFNSI----------------------------- 127
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 175 hqmaadrlstsreitdryceaiklSGYnddmvcSVFVTYVEIYNNYCYDLLEDA-RNGSRVLTKREIRHDRQQQMYVDGA 253
Cdd:cd01368 128 ------------------------GGY------SVFVSYIEIYNEYIYDLLEPSpSSPTKKRQSLRLREDHNGNMYVAGL 177
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 254 KDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRAyETKSVypTMDSSQIIVSQLCLVDLAGSER 333
Cdd:cd01368 178 TEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLVQAPGD-SDGDV--DQDKDQITVSQLSLVDLAGSER 254
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 334 AKRTQNVGERLAEANSINQSLMTLRQCIEVLRRNQKSSSQNLeqVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYD 413
Cdd:cd01368 255 TSRTQNTGERLKEAGNINTSLMTLGTCIEVLRENQLQGTNKM--VPFRDSKLTHLFQNYFDGEGKASMIVNVNPCASDYD 332
                       410
                ....*....|...
gi 71991856 414 ENMSALAFAEESQ 426
Cdd:cd01368 333 ETLHVMKFSAIAQ 345
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
27-434 1.22e-116

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 355.73  E-value: 1.22e-116
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856     27 SIEVVCRLCPYTGST-----PSLIAIDEGSIQTVLppaqFRRENAPQVEKVFRFGRVFSENDGQATVFERTSVDLILNLL 101
Cdd:smart00129   1 NIRVVVRVRPLNKREksrksPSVVPFPDKVGKTLT----VRSPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVL 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    102 KGQNSLLFTYGVTGSGKTYTMTGKPTETGtgLLPRTLDVIFNSINNRvekcifypsalntfeiratldahlkrhqmaadr 181
Cdd:smart00129  77 EGYNATIFAYGQTGSGKTYTMIGTPDSPG--IIPRALKDLFEKIDKR--------------------------------- 121
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    182 lstsreitdryceaiklsgyNDDMVCSVFVTYVEIYNNYCYDLLEDARNgsrvltKREIRHDRQQQMYVDGAKDVEVSSS 261
Cdd:smart00129 122 --------------------EEGWQFSVKVSYLEIYNEKIRDLLNPSSK------KLEIREDEKGGVYVKGLTEISVSSF 175
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    262 EEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRayetksvypTMDSSQIIVSQLCLVDLAGSERAKRTQNVG 341
Cdd:smart00129 176 EEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIK---------NSSSGSGKASKLNLVDLAGSERAKKTGAEG 246
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    342 ERLAEANSINQSLMTLRQCIEVLRRNQKSSsqnleQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSALAF 421
Cdd:smart00129 247 DRLKEAGNINKSLSALGNVINALAQHSKSR-----HIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSSSNLEETLSTLRF 321
                          410
                   ....*....|...
gi 71991856    422 AEESQTIEVKKQV 434
Cdd:smart00129 322 ASRAKEIKNKPIV 334
Kinesin pfam00225
Kinesin motor domain;
70-428 7.54e-100

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 311.81  E-value: 7.54e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    70 EKVFRFGRVFSENDGQATVFERTSVDLILNLLKGQNSLLFTYGVTGSGKTYTMTGKPTETGtgLLPRTLDVIFNSINNRV 149
Cdd:pfam00225  39 TKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPG--IIPRALEDLFDRIQKTK 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   150 EKCIFypsalntfeiratldahlkrhqmaadrlstsreitdryceaiklsgynddmvcSVFVTYVEIYNNYCYDLLEDAR 229
Cdd:pfam00225 117 ERSEF-----------------------------------------------------SVKVSYLEIYNEKIRDLLSPSN 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   230 NGSRVLtkrEIRHDRQQQMYVDGAKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRAyetksv 309
Cdd:pfam00225 144 KNKRKL---RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRS------ 214
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   310 ypTMDSSQIIVSQLCLVDLAGSERAKRTQNV-GERLAEANSINQSLMTLRQCIEVLRRNQKSSsqnleqVPYRQSKLTHL 388
Cdd:pfam00225 215 --TGGEESVKTGKLNLVDLAGSERASKTGAAgGQRLKEAANINKSLSALGNVISALADKKSKH------IPYRDSKLTRL 286
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 71991856   389 FKNYLEGNGKIRMVICVNPKPDDYDENMSALAFAEESQTI 428
Cdd:pfam00225 287 LQDSLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI 326
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
27-423 3.86e-99

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 309.96  E-value: 3.86e-99
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  27 SIEVVCRLCPYTG----STPSLIAIDEGSIQTVLPPAQFRRENapqveKVFRFGRVFSENDGQATVFERTSVDLILNLLK 102
Cdd:cd00106   1 NVRVAVRVRPLNGrearSAKSVISVDGGKSVVLDPPKNRVAPP-----KTFAFDAVFDSTSTQEEVYEGTAKPLVDSALE 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 103 GQNSLLFTYGVTGSGKTYTMTGKPTEtGTGLLPRTLDVIFNSINNRVEKcifypsalntfeiratldahlkrhqmaadrl 182
Cdd:cd00106  76 GYNGTIFAYGQTGSGKTYTMLGPDPE-QRGIIPRALEDIFERIDKRKET------------------------------- 123
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 183 stsreitdryceaiklsgyndDMVCSVFVTYVEIYNNYCYDLLEDARNgsrvlTKREIRHDRQQQMYVDGAKDVEVSSSE 262
Cdd:cd00106 124 ---------------------KSSFSVSASYLEIYNEKIYDLLSPVPK-----KPLSLREDPKRGVYVKGLTEVEVGSLE 177
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 263 EALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRayetksvypTMDSSQIIVSQLCLVDLAGSERAKRTQNVGE 342
Cdd:cd00106 178 DALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNR---------EKSGESVTSSKLNLVDLAGSERAKKTGAEGD 248
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 343 RLAEANSINQSLMTLRQCIEVLRRNQKSssqnleQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSALAFA 422
Cdd:cd00106 249 RLKEGGNINKSLSALGKVISALADGQNK------HIPYRDSKLTRLLQDSLGGNSKTIMIACISPSSENFEETLSTLRFA 322

                .
gi 71991856 423 E 423
Cdd:cd00106 323 S 323
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
28-429 3.19e-69

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 230.94  E-value: 3.19e-69
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  28 IEVVCRLCPY----TGSTPSLIAIDEGSIQTV-LPPAQFRRenapqveKVFRFGRVFSENDGQATVFERTSvDLILNLLK 102
Cdd:cd01366   4 IRVFCRVRPLlpseENEDTSHITFPDEDGQTIeLTSIGAKQ-------KEFSFDKVFDPEASQEDVFEEVS-PLVQSALD 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 103 GQNSLLFTYGVTGSGKTYTMTGkpTETGTGLLPRTLDVIFNSINNRVEKcifypsalntfeiratldahlkrhqmaadrl 182
Cdd:cd01366  76 GYNVCIFAYGQTGSGKTYTMEG--PPESPGIIPRALQELFNTIKELKEK------------------------------- 122
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 183 stsreitdryceaiklsGYNDDMVCSvfvtYVEIYNNYCYDLLEDARNGSrvlTKREIRHDRQQQM-YVDGAKDVEVSSS 261
Cdd:cd01366 123 -----------------GWSYTIKAS----MLEIYNETIRDLLAPGNAPQ---KKLEIRHDSEKGDtTVTNLTEVKVSSP 178
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 262 EEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLvmapRAYETKSvyptmdsSQIIVSQLCLVDLAGSERAKRTQNVG 341
Cdd:cd01366 179 EEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHI----SGRNLQT-------GEISVGKLNLVDLAGSERLNKSGATG 247
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 342 ERLAEANSINQSLMTLRQCIEVLRRNQKsssqnleQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSALAF 421
Cdd:cd01366 248 DRLKETQAINKSLSALGDVISALRQKQS-------HIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESNLNETLNSLRF 320

                ....*...
gi 71991856 422 AEESQTIE 429
Cdd:cd01366 321 ASKVNSCE 328
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
64-429 1.56e-63

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 216.04  E-value: 1.56e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  64 ENAPQV----EKVFRFGRVFSENDGQATVFERTSVDLILNLLKGQNSLLFTYGVTGSGKTYTM-TGKPTETG---TGLLP 135
Cdd:cd01372  29 PGEPQVtvgtDKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMgTAYTAEEDeeqVGIIP 108
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 136 RTLDVIFNSINNRVEKCIFypsalntfeiratldahlkrhqmaadrlstsreitdryceaiklsgynddmvcSVFVTYVE 215
Cdd:cd01372 109 RAIQHIFKKIEKKKDTFEF-----------------------------------------------------QLKVSFLE 135
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 216 IYNNYCYDLLEDARNGSRVLTkreIRHDRQQQMYVDGAKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTI 295
Cdd:cd01372 136 IYNEEIRDLLDPETDKKPTIS---IREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTI 212
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 296 KLVMAPRAYETKSVYPTMDSSqIIVSQLCLVDLAGSERAKRTQNVGERLAEANSINQSLMTLRQCIEVLRRNQKSSSqnl 375
Cdd:cd01372 213 TLEQTKKNGPIAPMSADDKNS-TFTSKFHFVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALGDESKKGA--- 288
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....
gi 71991856 376 eQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSALAFAEESQTIE 429
Cdd:cd01372 289 -HVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
27-422 1.33e-61

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 210.27  E-value: 1.33e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  27 SIEVVCRLCPytgSTPSLIAIDEGSIQTVLPPAQFRRENAPQVekvFRFGRVFSENDGQATVFERTSVDLILNLLKGQNS 106
Cdd:cd01374   1 KITVTVRVRP---LNSREIGINEQVAWEIDNDTIYLVEPPSTS---FTFDHVFGGDSTNREVYELIAKPVVKSALEGYNG 74
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 107 LLFTYGVTGSGKTYTMTGkpTETGTGLLPRTLDVIFNSINNRVEKcifypsalnTFEIRatldahlkrhqmaadrlstsr 186
Cdd:cd01374  75 TIFAYGQTSSGKTFTMSG--DEDEPGIIPLAIRDIFSKIQDTPDR---------EFLLR--------------------- 122
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 187 eitdryceaiklsgynddmvcsvfVTYVEIYNNYCYDLLEDARNGSRvltkreIRHDRQQQMYVDGAKDVEVSSSEEALE 266
Cdd:cd01374 123 ------------------------VSYLEIYNEKINDLLSPTSQNLK------IRDDVEKGVYVAGLTEEIVSSPEHALS 172
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 267 VFCLGEERRRVSSTLLNKDSSRSHSVFTIKlvmapraYETKSVYPTMDSSqIIVSQLCLVDLAGSERAKRTQNVGERLAE 346
Cdd:cd01374 173 LIARGEKNRHVGETDMNERSSRSHTIFRIT-------IESSERGELEEGT-VRVSTLNLIDLAGSERAAQTGAAGVRRKE 244
                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71991856 347 ANSINQSLMTLRQCIevlrrNQKSSSQNLEQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSALAFA 422
Cdd:cd01374 245 GSHINKSLLTLGTVI-----SKLSEGKVGGHIPYRDSKLTRILQPSLGGNSRTAIICTITPAESHVEETLNTLKFA 315
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
26-434 3.75e-61

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 210.29  E-value: 3.75e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  26 DSIEVVCRLCPYT------GSTPSLIAIDEGSIQTVLPPAQFRRENAPQVEKVFRFGRVFSENDG-------QATVFERT 92
Cdd:cd01365   1 ANVKVAVRVRPFNsrekerNSKCIVQMSGKETTLKNPKQADKNNKATREVPKSFSFDYSYWSHDSedpnyasQEQVYEDL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  93 SVDLILNLLKGQNSLLFTYGVTGSGKTYTMTGKPTETGtgLLPRTLDVIFNSINNRVekcifypsalntfeiratldahl 172
Cdd:cd01365  81 GEELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQEQPG--IIPRLCEDLFSRIADTT----------------------- 135
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 173 krhqmaadrlstsreitdryceaiklsgyNDDMVCSVFVTYVEIYNNYCYDLLEDARNGSRVLTKreIRHDRQQQMYVDG 252
Cdd:cd01365 136 -----------------------------NQNMSYSVEVSYMEIYNEKVRDLLNPKPKKNKGNLK--VREHPVLGPYVED 184
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 253 AKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIklVMAPRAYETksvypTMDSSQIIVSQLCLVDLAGSE 332
Cdd:cd01365 185 LSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTI--VLTQKRHDA-----ETNLTTEKVSKISLVDLAGSE 257
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 333 RAKRTQNVGERLAEANSINQSLMTLRQCIEVLRRNQKS-SSQNLEQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDD 411
Cdd:cd01365 258 RASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGkSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIAAISPADIN 337
                       410       420
                ....*....|....*....|...
gi 71991856 412 YDENMSALAFAEESQTIEVKKQV 434
Cdd:cd01365 338 YEETLSTLRYADRAKKIVNRAVV 360
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
70-428 1.14e-59

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 205.66  E-value: 1.14e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  70 EKVFRFGRVFSENDGQATVFERTSVDLILNLLKGQNSLLFTYGVTGSGKTYTMTGkpTETGTGLLPRTLDVIFNSInnrv 149
Cdd:cd01370  60 ELKYVFDRVFDETSTQEEVYEETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLG--TPQEPGLMVLTMKELFKRI---- 133
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 150 ekcifypsalntfeiratldahlkrhqmaadrlstsreitdrycEAIKlsgynDDMVCSVFVTYVEIYNNYCYDLLEdar 229
Cdd:cd01370 134 --------------------------------------------ESLK-----DEKEFEVSMSYLEIYNETIRDLLN--- 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 230 NGSRVLtkrEIRHDRQQQMYVDGAKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRayeTKSV 309
Cdd:cd01370 162 PSSGPL---ELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDK---TASI 235
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 310 YptmdsSQIIVSQLCLVDLAGSERAKRTQNVGERLAEANSINQSLMTLRQCIEVLrrnqKSSSQNLEQVPYRQSKLTHLF 389
Cdd:cd01370 236 N-----QQVRQGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINAL----ADPGKKNKHIPYRDSKLTRLL 306
                       330       340       350
                ....*....|....*....|....*....|....*....
gi 71991856 390 KNYLEGNGKIRMVICVNPKPDDYDENMSALAFAEESQTI 428
Cdd:cd01370 307 KDSLGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
26-428 5.48e-57

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 198.07  E-value: 5.48e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  26 DSIEVVCRLCPYTG-----STPSLIAIDEGSIQ-TVLPPaqfrRENAPQVEKVFRFGRVFSENDGQATVFERTSVDLILN 99
Cdd:cd01371   1 ENVKVVVRCRPLNGkekaaGALQIVDVDEKRGQvSVRNP----KATANEPPKTFTFDAVFDPNSKQLDVYDETARPLVDS 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 100 LLKGQNSLLFTYGVTGSGKTYTMTGKPTETGT-GLLPRTLDVIFNSINNRVEKCIFYpsalntfeiratldahlkrhqma 178
Cdd:cd01371  77 VLEGYNGTIFAYGQTGTGKTYTMEGKREDPELrGIIPNSFAHIFGHIARSQNNQQFL----------------------- 133
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 179 adrlstsreitdryceaiklsgynddmvcsVFVTYVEIYNNYCYDLLedarnGSRVLTKREIRHDRQQQMYVDGAKDVEV 258
Cdd:cd01371 134 ------------------------------VRVSYLEIYNEEIRDLL-----GKDQTKRLELKERPDTGVYVKDLSMFVV 178
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 259 SSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRAYETKSVyptmdssqIIVSQLCLVDLAGSERAKRTQ 338
Cdd:cd01371 179 KNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEKGEDGENH--------IRVGKLNLVDLAGSERQSKTG 250
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 339 NVGERLAEANSINQSLMTLRQCIEVLRRNqKSSsqnleQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSA 418
Cdd:cd01371 251 ATGERLKEATKINLSLSALGNVISALVDG-KST-----HIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLST 324
                       410
                ....*....|
gi 71991856 419 LAFAEESQTI 428
Cdd:cd01371 325 LRYANRAKNI 334
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
26-428 8.23e-57

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 197.17  E-value: 8.23e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  26 DSIEVVCRLCPytgsTPSLIAIDEGSIQTVLPPAQFRRENAPQVEKVFRFGRVFSENDGQATVFERTSVDLILNLLKGQN 105
Cdd:cd01369   2 CNIKVVCRFRP----LNELEVLQGSKSIVKFDPEDTVVIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLNGYN 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 106 SLLFTYGVTGSGKTYTMTGKP-TETGTGLLPRTLDVIFNSINNrvekcifypsalntfeiratLDAHLKRHqmaadrlst 184
Cdd:cd01369  78 GTIFAYGQTSSGKTYTMEGKLgDPESMGIIPRIVQDIFETIYS--------------------MDENLEFH--------- 128
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 185 sreitdryceaiklsgynddmvcsVFVTYVEIYNNYCYDLLEDARngsrvlTKREIRHDRQQQMYVDGAKDVEVSSSEEA 264
Cdd:cd01369 129 ------------------------VKVSYFEIYMEKIRDLLDVSK------TNLSVHEDKNRGPYVKGATERFVSSPEEV 178
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 265 LEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAprayetksvypTMDSSQIIVSQLCLVDLAGSERAKRTQNVGERL 344
Cdd:cd01369 179 LDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQE-----------NVETEKKKSGKLYLVDLAGSEKVSKTGAEGAVL 247
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 345 AEANSINQSLMTLRQCIEVLRRNQKSSsqnleqVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSALAFAEE 424
Cdd:cd01369 248 DEAKKINKSLSALGNVINALTDGKKTH------IPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGQR 321

                ....
gi 71991856 425 SQTI 428
Cdd:cd01369 322 AKTI 325
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
27-423 1.40e-56

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 197.03  E-value: 1.40e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  27 SIEVVCRLCPYTGSTPSLIAIDE-GSIQTVLPPAQFRRE--NAPQVEKVFRFGRVFsENDGQATVFERTSVDLILNLLKG 103
Cdd:cd01375   1 KVQAFVRVRPTDDFAHEMIKYGEdGKSISIHLKKDLRRGvvNNQQEDWSFKFDGVL-HNASQELVYETVAKDVVSSALAG 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 104 QNSLLFTYGVTGSGKTYTMTGKPTE-TGTGLLPRTLDVIFNSINNRVEKCIfypsalntfeiratldahlkrhqmaadrl 182
Cdd:cd01375  80 YNGTIFAYGQTGAGKTFTMTGGTENyKHRGIIPRALQQVFRMIEERPTKAY----------------------------- 130
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 183 stsreitdryceaiklsgynddmvcSVFVTYVEIYNNYCYDLLEDARNGSRVLTKREIRHDRQQQMYVDGAKDVEVSSSE 262
Cdd:cd01375 131 -------------------------TVHVSYLEIYNEQLYDLLSTLPYVGPSVTPMTILEDSPQNIFIKGLSLHLTSQEE 185
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 263 EALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVMAPRayetksvypTMDSSQIIVSQLCLVDLAGSERAKRTQNVGE 342
Cdd:cd01375 186 EALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSR---------TLSSEKYITSKLNLVDLAGSERLSKTGVEGQ 256
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 343 RLAEANSINQSLMTLRQCIEVLrrnqksSSQNLEQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSALAFA 422
Cdd:cd01375 257 VLKEATYINKSLSFLEQAIIAL------SDKDRTHVPFRQSKLTHVLRDSLGGNCNTVMVANIYGEAAQLEETLSTLRFA 330

                .
gi 71991856 423 E 423
Cdd:cd01375 331 S 331
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
68-435 1.47e-55

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 200.74  E-value: 1.47e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  68 QVEKVFRFGRVFSENDGQATVFERTSVDLILNLLKGQNSLLFTYGVTGSGKTYTMTGkpTETGTGLLPRTLDVIFnsinn 147
Cdd:COG5059  53 SKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSG--TEEEPGIIPLSLKELF----- 125
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 148 rvekcifypsalntfeiratldahlkrhqmaaDRLSTSREITDRyceAIKLSgynddmvcsvfvtYVEIYNNYCYDLLED 227
Cdd:COG5059 126 --------------------------------SKLEDLSMTKDF---AVSIS-------------YLEIYNEKIYDLLSP 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 228 ARNGSRvltkreIRHDRQQQMYVDGAKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIklvmaprayETK 307
Cdd:COG5059 158 NEESLN------IREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQI---------ELA 222
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 308 SVYPTMDSSQIivSQLCLVDLAGSERAKRTQNVGERLAEANSINQSLMTLRQCIEVLRRNQKSSSqnleqVPYRQSKLTH 387
Cdd:COG5059 223 SKNKVSGTSET--SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGH-----IPYRESKLTR 295
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*...
gi 71991856 388 LFKNYLEGNGKIRMVICVNPKPDDYDENMSALAFAEESQTIEVKKQVE 435
Cdd:COG5059 296 LLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVN 343
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
26-431 9.99e-54

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 189.64  E-value: 9.99e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  26 DSIEVVCRLCPytgstPSLIAIDEGSIQ--TVLPPAQFRRENAPqvEKVFRFGRVFSENDGQATVFERTSVDLILNLLKG 103
Cdd:cd01373   1 DAVKVFVRIRP-----PAEREGDGEYGQclKKLSSDTLVLHSKP--PKTFTFDHVADSNTNQESVFQSVGKPIVESCLSG 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 104 QNSLLFTYGVTGSGKTYTMTGKPTETGT------GLLPRTLDVIFNSINNRVEKcifypsalntfeiratldahlkrhqm 177
Cdd:cd01373  74 YNGTIFAYGQTGSGKTYTMWGPSESDNEsphglrGVIPRIFEYLFSLIQREKEK-------------------------- 127
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 178 aadrlstSREITDRYCEaiklsgynddmvCSvfvtYVEIYNNYCYDLLEDArngSRVLtkrEIRHDRQQQMYVDGAKDVE 257
Cdd:cd01373 128 -------AGEGKSFLCK------------CS----FLEIYNEQIYDLLDPA---SRNL---KLREDIKKGVYVENLVEEY 178
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 258 VSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLvmaprayetKSVYPTMDSSQIIVSQLCLVDLAGSERAKRT 337
Cdd:cd01373 179 VTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTI---------ESWEKKACFVNIRTSRLNLVDLAGSERQKDT 249
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 338 QNVGERLAEANSINQSLMTLRQCIEVLRRNQKSSSqnlEQVPYRQSKLTHLFKNYLEGNGKIrMVIC-VNPKPDDYDENM 416
Cdd:cd01373 250 HAEGVRLKEAGNINKSLSCLGHVINALVDVAHGKQ---RHVCYRDSKLTFLLRDSLGGNAKT-AIIAnVHPSSKCFGETL 325
                       410
                ....*....|....*
gi 71991856 417 SALAFAEESQTIEVK 431
Cdd:cd01373 326 STLRFAQRAKLIKNK 340
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
28-426 2.40e-50

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 179.24  E-value: 2.40e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  28 IEVVCRLCPYT------GSTPSLIAIDEGSIQTVLPPAQFRRENapqvekvFRFGRVFSENDGQATVFERTSVDLILNLL 101
Cdd:cd01376   2 VRVAVRVRPFVdgtagaSDPSCVSGIDSCSVELADPRNHGETLK-------YQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 102 KGQNSLLFTYGVTGSGKTYTMTGKPTETGtgLLPRTLDvifnsinnrvekcifypsalntfeiratldahlkrhqmaaDR 181
Cdd:cd01376  75 EGQNATVFAYGSTGAGKTFTMLGSPEQPG--LMPLTVM----------------------------------------DL 112
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 182 LSTSREITDRYceaiklsgynddmvcSVFVTYVEIYNNYCYDLLEDARNgsrvltKREIRHDRQQQMYVDGAKDVEVSSS 261
Cdd:cd01376 113 LQMTRKEAWAL---------------SFTMSYLEIYQEKILDLLEPASK------ELVIREDKDGNILIPGLSSKPIKSM 171
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 262 EEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLVmaPRAYETKSVYPTmdssqiivSQLCLVDLAGSERAKRTQNVG 341
Cdd:cd01376 172 AEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVD--QRERLAPFRQRT--------GKLNLIDLAGSEDNRRTGNEG 241
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 342 ERLAEANSINQSLMTLRQCIEVLRrnqksssQNLEQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSALAF 421
Cdd:cd01376 242 IRLKESGAINSSLFVLSKVVNALN-------KNLPRIPYRDSKLTRLLQDSLGGGSRCIMVANIAPERTFYQDTLSTLNF 314

                ....*
gi 71991856 422 AEESQ 426
Cdd:cd01376 315 AARSR 319
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
65-434 2.49e-46

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 169.04  E-value: 2.49e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  65 NAPQVEKVFRFGRVFSENDGQATVFERTSVDLILNLLKGQNSLLFTYGVTGSGKTYTMTGKPTETG---------TGLLP 135
Cdd:cd01364  43 ADKSSTKTYTFDMVFGPEAKQIDVYRSVVCPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRSPNEeytweldplAGIIP 122
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 136 RTLDVIFNsinnrvekcifypsalntfeiratldahlkrhqmaadrlstsreitdryceaiKLSGYNDDMvcSVFVTYVE 215
Cdd:cd01364 123 RTLHQLFE-----------------------------------------------------KLEDNGTEY--SVKVSYLE 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 216 IYNNYCYDLLEDARNgsrvLTKREIRHD---RQQQMYVDGAKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSV 292
Cdd:cd01364 148 IYNEELFDLLSPSSD----VSERLRMFDdprNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSV 223
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 293 FTIKLVMAPRAYETKSVYPtmdssqiiVSQLCLVDLAGSERAKRTQNVGERLAEANSINQSLMTLRQCIEVLrrNQKSSs 372
Cdd:cd01364 224 FSITIHIKETTIDGEELVK--------IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL--VERAP- 292
                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 71991856 373 qnleQVPYRQSKLTHLFKNYLEGNGKIRMVICVNPKPDDYDENMSALAFAEESQTIEVKKQV 434
Cdd:cd01364 293 ----HVPYRESKLTRLLQDSLGGRTKTSIIATISPASVNLEETLSTLEYAHRAKNIKNKPEV 350
MKLP1_Arf_bdg pfam16540
Arf6-interacting domain of mitotic kinesin-like protein 1; This family is a C-terminal region ...
673-776 1.13e-42

Arf6-interacting domain of mitotic kinesin-like protein 1; This family is a C-terminal region of mitotic kinesin-like proteins that is necessary for the interaction with the small GTPase Arf6. MKLP1 is a Flemming body-localising protein essential for cytokinesis, so its interaction with Arf6 shows how Arf6 is involved in cytokinesis. The Arf6-MKLP1 complex plays a crucial role in cytokinesis by connecting the microtubule bundle and membranes at the cleavage plane.


Pssm-ID: 465166  Cd Length: 107  Bit Score: 150.15  E-value: 1.13e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   673 YVNPKYqRRSKSA-SRLLDHQPLHRVPTGTVLQSRTPA--NAIRTTKPEMHQLNKSGEYRLTHQEVDDEGNISTNIVKGN 749
Cdd:pfam16540   2 VVNPRH-RRSRSAgERWLDHKPPSNVPTGTILQPRIPNrkSVTKLTKPKDKALAKASKYCLTHQEQDSDGEIETKLYKGD 80
                          90       100
                  ....*....|....*....|....*..
gi 71991856   750 VIPTVSGGTAVFFNDIERLTHESPSTR 776
Cdd:pfam16540  81 VIPTRGGGAQVQFNDIETLKQESPTGS 107
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
4-422 1.77e-39

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 148.98  E-value: 1.77e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   4 RKRgitPSRDQVRRKKlsieETDSIEVVCRLCPYtgstpsliaIDEgsiqtvlppAQFRRENAPQVEK-VFRFGRVFSEN 82
Cdd:cd01367   7 RKR---PLNKKEVAKK----EIDVVSVPSKLTLI---------VHE---------PKLKVDLTKYIENhTFRFDYVFDES 61
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  83 DGQATVFERTSVDLILNLLKGQNSLLFTYGVTGSGKTYTMTGKptetgtgllprtldvifnsinnrvekcifYPSALNTF 162
Cdd:cd01367  62 SSNETVYRSTVKPLVPHIFEGGKATCFAYGQTGSGKTYTMGGD-----------------------------FSGQEESK 112
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 163 EIratldahlkrHQMAAdrlstsREITDRyceaikLSGYNDDMVCSVFVTYVEIYNNYCYDLLEDArngsrvlTKREIRH 242
Cdd:cd01367 113 GI----------YALAA------RDVFRL------LNKLPYKDNLGVTVSFFEIYGGKVFDLLNRK-------KRVRLRE 163
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 243 DRQQQMYVDGAKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIKLvmapRAYETksvyptmdssQIIVSQ 322
Cdd:cd01367 164 DGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIIL----RDRGT----------NKLHGK 229
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856 323 LCLVDLAGSER-AKRTQNVGERLAEANSINQSLMTLRQCIEVLRRNQKsssqnleQVPYRQSKLTHLFKNYLEGN-GKIR 400
Cdd:cd01367 230 LSFVDLAGSERgADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-------HIPFRGSKLTQVLKDSFIGEnSKTC 302
                       410       420
                ....*....|....*....|..
gi 71991856 401 MVICVNPKPDDYDENMSALAFA 422
Cdd:cd01367 303 MIATISPGASSCEHTLNTLRYA 324
PLN03188 PLN03188
kinesin-12 family protein; Provisional
70-465 2.01e-35

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 145.08  E-value: 2.01e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    70 EKVFRFGRVFSENDGQATVFERTSVDLILNLLKGQNSLLFTYGVTGSGKTYTMTGKptetGTGLLPRTLDVIFNSINNRV 149
Cdd:PLN03188  131 GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGP----ANGLLEEHLSGDQQGLTPRV 206
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   150 EKCIFypSALNTFEIRATlDAHLKRHqmaadrlstsreitdryCEaiklsgynddmvCSvfvtYVEIYNNYCYDLLEDA- 228
Cdd:PLN03188  207 FERLF--ARINEEQIKHA-DRQLKYQ-----------------CR------------CS----FLEIYNEQITDLLDPSq 250
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   229 RNgsrvltkREIRHDRQQQMYVDGAKDVEVSSSEEALEVFCLGEERRRVSSTLLNKDSSRSHSVFTIklVMAPRAyetKS 308
Cdd:PLN03188  251 KN-------LQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTC--VVESRC---KS 318
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856   309 VYPTMDSSQiiVSQLCLVDLAGSERAKRTQNVGERLAEANSINQSLMTLRQCIEVLRRNQKSSSQnlEQVPYRQSKLTHL 388
Cdd:PLN03188  319 VADGLSSFK--TSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQ--RHIPYRDSRLTFL 394
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71991856   389 FKNYLEGNGKIRMVICVNPKPDDYDENMSALAFAEESQTIEVKKQVERMPSERIPH--SFFTQWNSELDgsvRMEDDGS 465
Cdd:PLN03188  395 LQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFlrEVIRQLRDELQ---RVKANGN 470
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
70-157 2.32e-07

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 51.19  E-value: 2.32e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856  70 EKVFRFGRVFSENDGQATVFeRTSVDLILNLLKGQNSL-LFTYGVTGSGKTYTMtgkptetgTGLLPRTLDVIFNSINNR 148
Cdd:cd01363  17 SKIIVFYRGFRRSESQPHVF-AIADPAYQSMLDGYNNQsIFAYGESGAGKTETM--------KGVIPYLASVAFNGINKG 87

                ....*....
gi 71991856 149 VEKCIFYPS 157
Cdd:cd01363  88 ETEGWVYLT 96
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
12-145 3.53e-07

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 50.30  E-value: 3.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71991856    12 RDQVRRKKL--SIEETD-SIEVVCRLCPYTGSTPSLIAIDEGSIQTvlppaQFRRENapqveKVFRFGRVFSENDGQATV 88
Cdd:pfam16796   3 EEETLRRKLenSIQELKgNIRVFARVRPELLSEAQIDYPDETSSDG-----KIGSKN-----KSFSFDRVFPPESEQEDV 72
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 71991856    89 FERTSVdLILNLLKGQNSLLFTYGVTGSGKTytmtgkptetgTGLLPRTLDVIFNSI 145
Cdd:pfam16796  73 FQEISQ-LVQSCLDGYNVCIFAYGQTGSGSN-----------DGMIPRAREQIFRFI 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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