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Conserved domains on  [gi|72000997|ref|NP_001024216|]
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Polypeptide N-acetylgalactosaminyltransferase 4 [Caenorhabditis elegans]

Protein Classification

polypeptide N-acetylgalactosaminyltransferase( domain architecture ID 11551826)

polypeptide N-acetylgalactosaminyltransferase catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor

CAZY:  GT2
EC:  2.4.1.41
Gene Ontology:  GO:0004653|GO:0030246|GO:0046872
SCOP:  3000077|3000678

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
pp-GalNAc-T cd02510
pp-GalNAc-T initiates the formation of mucin-type O-linked glycans; UDP-GalNAc: polypeptide ...
154-449 0e+00

pp-GalNAc-T initiates the formation of mucin-type O-linked glycans; UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.


:

Pssm-ID: 133004 [Multi-domain]  Cd Length: 299  Bit Score: 517.14  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 154 TVIITYHNEARSSLLRTVFSVFNQSPEELLLEIVLVDDNSQDVEIGKEL-----AQIQRITVLRNNQREGLIRSRVKGAQ 228
Cdd:cd02510   1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLeeyykKYLPKVKVLRLKKREGLIRARIAGAR 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 229 VARAPVLTFLDSHIECNQKWLEPLLARIAENPKAVVAPIIDVINVDNFNYVGASADLRGGFDWTLVFRWEFMNEQLRkeR 308
Cdd:cd02510  81 AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEER--R 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 309 HAHPTAPIRSPTMAGGLFAISKEWFNELGTYDLDMEVWGGENLEMSFRVWQCGGSLEIMPCSRVGHVFR-KKHPYTFPGG 387
Cdd:cd02510 159 RESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRrKRKPYTFPGG 238
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72000997 388 SGNVfQKNTRRAAEVWMDEYKAIYLKNVPSARFVNFGDITDRLAIRDRLQCKSFKWYLENVY 449
Cdd:cd02510 239 SGTV-LRNYKRVAEVWMDEYKEYFYKARPELRNIDYGDLSERKALRERLKCKSFKWYLENVY 299
beta-trefoil_Ricin_GALNT2 cd23434
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
461-582 2.24e-36

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2) and similar proteins; GALNT2 (EC 2.4.1.41), also called polypeptide GalNAc transferase 2, GalNAc-T2, pp-GaNTase 2, protein-UDP acetylgalactosaminyltransferase 2, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 2, catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT2 has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b. It is probably involved in O-linked glycosylation of the immunoglobulin A1 (IgA1) hinge region. It is also involved in O-linked glycosylation of APOC-III, ANGPTL3 and PLTP. It participates in the regulation of HDL-C metabolism. GALNT2 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


:

Pssm-ID: 467312 [Multi-domain]  Cd Length: 121  Bit Score: 131.68  E-value: 2.24e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 461 KSFQMKIGNLCLDSMARKESEAPGLFGCHGTGGNQEWVFDQLtKTFKNaiSQLCLDFSSNTENKTVTMVKCENL-RPDTM 539
Cdd:cd23434   1 KFGSLKQGNLCLDTLGHKAGGTVGLYPCHGTGGNQEWSFTKD-GQIKH--DDLCLTVVDRAPGSLVTLQPCREDdSNQKW 77
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 72000997 540 VVEKNG-WLTQG--GKCLTVNQGSggDWLIYGAHCELNNGAQRWIF 582
Cdd:cd23434  78 EQIENNsKLRHVgsNLCLDSRNAK--SGGLTVETCDPSSGSQQWKF 121
 
Name Accession Description Interval E-value
pp-GalNAc-T cd02510
pp-GalNAc-T initiates the formation of mucin-type O-linked glycans; UDP-GalNAc: polypeptide ...
154-449 0e+00

pp-GalNAc-T initiates the formation of mucin-type O-linked glycans; UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.


Pssm-ID: 133004 [Multi-domain]  Cd Length: 299  Bit Score: 517.14  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 154 TVIITYHNEARSSLLRTVFSVFNQSPEELLLEIVLVDDNSQDVEIGKEL-----AQIQRITVLRNNQREGLIRSRVKGAQ 228
Cdd:cd02510   1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLeeyykKYLPKVKVLRLKKREGLIRARIAGAR 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 229 VARAPVLTFLDSHIECNQKWLEPLLARIAENPKAVVAPIIDVINVDNFNYVGASADLRGGFDWTLVFRWEFMNEQLRkeR 308
Cdd:cd02510  81 AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEER--R 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 309 HAHPTAPIRSPTMAGGLFAISKEWFNELGTYDLDMEVWGGENLEMSFRVWQCGGSLEIMPCSRVGHVFR-KKHPYTFPGG 387
Cdd:cd02510 159 RESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRrKRKPYTFPGG 238
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72000997 388 SGNVfQKNTRRAAEVWMDEYKAIYLKNVPSARFVNFGDITDRLAIRDRLQCKSFKWYLENVY 449
Cdd:cd02510 239 SGTV-LRNYKRVAEVWMDEYKEYFYKARPELRNIDYGDLSERKALRERLKCKSFKWYLENVY 299
beta-trefoil_Ricin_GALNT2 cd23434
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
461-582 2.24e-36

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2) and similar proteins; GALNT2 (EC 2.4.1.41), also called polypeptide GalNAc transferase 2, GalNAc-T2, pp-GaNTase 2, protein-UDP acetylgalactosaminyltransferase 2, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 2, catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT2 has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b. It is probably involved in O-linked glycosylation of the immunoglobulin A1 (IgA1) hinge region. It is also involved in O-linked glycosylation of APOC-III, ANGPTL3 and PLTP. It participates in the regulation of HDL-C metabolism. GALNT2 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467312 [Multi-domain]  Cd Length: 121  Bit Score: 131.68  E-value: 2.24e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 461 KSFQMKIGNLCLDSMARKESEAPGLFGCHGTGGNQEWVFDQLtKTFKNaiSQLCLDFSSNTENKTVTMVKCENL-RPDTM 539
Cdd:cd23434   1 KFGSLKQGNLCLDTLGHKAGGTVGLYPCHGTGGNQEWSFTKD-GQIKH--DDLCLTVVDRAPGSLVTLQPCREDdSNQKW 77
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 72000997 540 VVEKNG-WLTQG--GKCLTVNQGSggDWLIYGAHCELNNGAQRWIF 582
Cdd:cd23434  78 EQIENNsKLRHVgsNLCLDSRNAK--SGGLTVETCDPSSGSQQWKF 121
Glycos_transf_2 pfam00535
Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, ...
154-331 1.01e-33

Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.


Pssm-ID: 425738 [Multi-domain]  Cd Length: 166  Bit Score: 125.97  E-value: 1.01e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997   154 TVIITYHNEArSSLLRTVFSVFNQSPEELllEIVLVDDNSQD--VEIGKELAQI-QRITVLRNNQREGLIRSRVKGAQVA 230
Cdd:pfam00535   1 SVIIPTYNEE-KYLLETLESLLNQTYPNF--EIIVVDDGSTDgtVEIAEEYAKKdPRVRVIRLPENRGKAGARNAGLRAA 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997   231 RAPVLTFLDSHIECNQKWLEPLLARIAENPKAVVAPIIDVINVDNFNYVGASADLRGGFDWTLVFRWEFmneqlrkerha 310
Cdd:pfam00535  78 TGDYIAFLDADDEVPPDWLEKLVEALEEDGADVVVGSRYVIFGETGEYRRASRITLSRLPFFLGLRLLG----------- 146
                         170       180
                  ....*....|....*....|.
gi 72000997   311 hPTAPIRSPTMAGGLFAISKE 331
Cdd:pfam00535 147 -LNLPFLIGGFALYRREALEE 166
Ricin_B_lectin pfam00652
Ricin-type beta-trefoil lectin domain;
469-580 4.56e-22

Ricin-type beta-trefoil lectin domain;


Pssm-ID: 395527 [Multi-domain]  Cd Length: 126  Bit Score: 91.82  E-value: 4.56e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997   469 NLCLDSMARKESEAP-GLFGCHGTGGNQEWVFDQlTKTFKNAISQLCLDFSSNTENKTVTMVKCENLRPDTM-VVEKNG- 545
Cdd:pfam00652  11 GKCLDVPGGSSAGGPvGLYPCHGSNGNQLWTLTG-DGTIRSVASDLCLDVGSTADGAKVVLWPCHPGNGNQRwRYDEDGt 89
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 72000997   546 WLTQG--GKCLTVNQGSGGDWLIYGAHCELNNGAQRW 580
Cdd:pfam00652  90 QIRNPqsGKCLDVSGAGTSNGKVILWTCDSGNPNQQW 126
RICIN smart00458
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication.
469-583 3.86e-20

Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication.


Pssm-ID: 214672 [Multi-domain]  Cd Length: 118  Bit Score: 86.03  E-value: 3.86e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997    469 NLCLDSMARKEseAPGLFGCHGTGGNQEWVFDQlTKTFKNAISQLCLDFSSNTENkTVTMVKCENLRPDT-MVVEKNGWL 547
Cdd:smart00458   7 GKCLDVNGNKN--PVGLFDCHGTGGNQLWKLTS-DGAIRIKDTDLCLTANGNTGS-TVTLYSCDGTNDNQyWEVNKDGTI 82
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 72000997    548 T--QGGKCLTVNQGSGGDWLIyGAHCELNNGaQRWIFE 583
Cdd:smart00458  83 RnpDSGKCLDVKDGNTGTKVI-LWTCSGNPN-QKWIFE 118
WcaA COG0463
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
154-337 2.25e-16

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 78.21  E-value: 2.25e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 154 TVIITYHNEARSsLLRTVFSVFNQSPEELllEIVLVDDNSQD--VEIGKELAQIQ-RITVLRNNQREGLIRSRVKGAQVA 230
Cdd:COG0463   5 SVVIPTYNEEEY-LEEALESLLAQTYPDF--EIIVVDDGSTDgtAEILRELAAKDpRIRVIRLERNRGKGAARNAGLAAA 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 231 RAPVLTFLDSHIECNQKWLEPLLARIAENPKAVVapiidvinvdnfnyVGASADLRGGFDWTLVFRWEFMNEQLRkerha 310
Cdd:COG0463  82 RGDYIAFLDADDQLDPEKLEELVAALEEGPADLV--------------YGSRLIREGESDLRRLGSRLFNLVRLL----- 142
                       170       180
                ....*....|....*....|....*..
gi 72000997 311 hptapIRSPTMAGGLFAISKEWFNELG 337
Cdd:COG0463 143 -----TNLPDSTSGFRLFRREVLEELG 164
 
Name Accession Description Interval E-value
pp-GalNAc-T cd02510
pp-GalNAc-T initiates the formation of mucin-type O-linked glycans; UDP-GalNAc: polypeptide ...
154-449 0e+00

pp-GalNAc-T initiates the formation of mucin-type O-linked glycans; UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.


Pssm-ID: 133004 [Multi-domain]  Cd Length: 299  Bit Score: 517.14  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 154 TVIITYHNEARSSLLRTVFSVFNQSPEELLLEIVLVDDNSQDVEIGKEL-----AQIQRITVLRNNQREGLIRSRVKGAQ 228
Cdd:cd02510   1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLeeyykKYLPKVKVLRLKKREGLIRARIAGAR 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 229 VARAPVLTFLDSHIECNQKWLEPLLARIAENPKAVVAPIIDVINVDNFNYVGASADLRGGFDWTLVFRWEFMNEQLRkeR 308
Cdd:cd02510  81 AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEER--R 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 309 HAHPTAPIRSPTMAGGLFAISKEWFNELGTYDLDMEVWGGENLEMSFRVWQCGGSLEIMPCSRVGHVFR-KKHPYTFPGG 387
Cdd:cd02510 159 RESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRrKRKPYTFPGG 238
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72000997 388 SGNVfQKNTRRAAEVWMDEYKAIYLKNVPSARFVNFGDITDRLAIRDRLQCKSFKWYLENVY 449
Cdd:cd02510 239 SGTV-LRNYKRVAEVWMDEYKEYFYKARPELRNIDYGDLSERKALRERLKCKSFKWYLENVY 299
beta-trefoil_Ricin_GALNT2 cd23434
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
461-582 2.24e-36

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2) and similar proteins; GALNT2 (EC 2.4.1.41), also called polypeptide GalNAc transferase 2, GalNAc-T2, pp-GaNTase 2, protein-UDP acetylgalactosaminyltransferase 2, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 2, catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT2 has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b. It is probably involved in O-linked glycosylation of the immunoglobulin A1 (IgA1) hinge region. It is also involved in O-linked glycosylation of APOC-III, ANGPTL3 and PLTP. It participates in the regulation of HDL-C metabolism. GALNT2 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467312 [Multi-domain]  Cd Length: 121  Bit Score: 131.68  E-value: 2.24e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 461 KSFQMKIGNLCLDSMARKESEAPGLFGCHGTGGNQEWVFDQLtKTFKNaiSQLCLDFSSNTENKTVTMVKCENL-RPDTM 539
Cdd:cd23434   1 KFGSLKQGNLCLDTLGHKAGGTVGLYPCHGTGGNQEWSFTKD-GQIKH--DDLCLTVVDRAPGSLVTLQPCREDdSNQKW 77
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 72000997 540 VVEKNG-WLTQG--GKCLTVNQGSggDWLIYGAHCELNNGAQRWIF 582
Cdd:cd23434  78 EQIENNsKLRHVgsNLCLDSRNAK--SGGLTVETCDPSSGSQQWKF 121
Glycos_transf_2 pfam00535
Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, ...
154-331 1.01e-33

Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.


Pssm-ID: 425738 [Multi-domain]  Cd Length: 166  Bit Score: 125.97  E-value: 1.01e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997   154 TVIITYHNEArSSLLRTVFSVFNQSPEELllEIVLVDDNSQD--VEIGKELAQI-QRITVLRNNQREGLIRSRVKGAQVA 230
Cdd:pfam00535   1 SVIIPTYNEE-KYLLETLESLLNQTYPNF--EIIVVDDGSTDgtVEIAEEYAKKdPRVRVIRLPENRGKAGARNAGLRAA 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997   231 RAPVLTFLDSHIECNQKWLEPLLARIAENPKAVVAPIIDVINVDNFNYVGASADLRGGFDWTLVFRWEFmneqlrkerha 310
Cdd:pfam00535  78 TGDYIAFLDADDEVPPDWLEKLVEALEEDGADVVVGSRYVIFGETGEYRRASRITLSRLPFFLGLRLLG----------- 146
                         170       180
                  ....*....|....*....|.
gi 72000997   311 hPTAPIRSPTMAGGLFAISKE 331
Cdd:pfam00535 147 -LNLPFLIGGFALYRREALEE 166
Ricin_B_lectin pfam00652
Ricin-type beta-trefoil lectin domain;
469-580 4.56e-22

Ricin-type beta-trefoil lectin domain;


Pssm-ID: 395527 [Multi-domain]  Cd Length: 126  Bit Score: 91.82  E-value: 4.56e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997   469 NLCLDSMARKESEAP-GLFGCHGTGGNQEWVFDQlTKTFKNAISQLCLDFSSNTENKTVTMVKCENLRPDTM-VVEKNG- 545
Cdd:pfam00652  11 GKCLDVPGGSSAGGPvGLYPCHGSNGNQLWTLTG-DGTIRSVASDLCLDVGSTADGAKVVLWPCHPGNGNQRwRYDEDGt 89
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 72000997   546 WLTQG--GKCLTVNQGSGGDWLIYGAHCELNNGAQRW 580
Cdd:pfam00652  90 QIRNPqsGKCLDVSGAGTSNGKVILWTCDSGNPNQQW 126
RICIN smart00458
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication.
469-583 3.86e-20

Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication.


Pssm-ID: 214672 [Multi-domain]  Cd Length: 118  Bit Score: 86.03  E-value: 3.86e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997    469 NLCLDSMARKEseAPGLFGCHGTGGNQEWVFDQlTKTFKNAISQLCLDFSSNTENkTVTMVKCENLRPDT-MVVEKNGWL 547
Cdd:smart00458   7 GKCLDVNGNKN--PVGLFDCHGTGGNQLWKLTS-DGAIRIKDTDLCLTANGNTGS-TVTLYSCDGTNDNQyWEVNKDGTI 82
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 72000997    548 T--QGGKCLTVNQGSGGDWLIyGAHCELNNGaQRWIFE 583
Cdd:smart00458  83 RnpDSGKCLDVKDGNTGTKVI-LWTCSGNPN-QKWIFE 118
beta-trefoil_Ricin_GALNT1-like cd23433
ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide ...
469-583 2.15e-19

ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide N-acetylgalactosaminyltransferase 1 (GALNT1)-like subfamily; The GALNT1-like subfamily includes GALNT1 and GALNT13. They catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT1 has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7. GALNT13 has a much stronger activity than GALNT1 to transfer GalNAc to mucin peptides, such as Muc5Ac and Muc7. It can glycosylate SDC3. It may be responsible for the synthesis of Tn antigen in neuronal cells. Members of this subfamily comprise a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467311 [Multi-domain]  Cd Length: 127  Bit Score: 84.29  E-value: 2.15e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 469 NLCLDSMARKESEAPGLFGCHGTGGNQEWVFdqltkTFKNAISQ--LCLDFSSNteNKTVTMVKCENLRP------Dtmv 540
Cdd:cd23433  15 NLCLDTMGRKAGEKVGLSSCHGQGGNQVFSY-----TAKGEIRSddLCLDASRK--GGPVKLEKCHGMGGnqeweyD--- 84
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 72000997 541 vEKNGWL--TQGGKCLTVNQGSGGDWLIYGAhCELNNGaQRWIFE 583
Cdd:cd23433  85 -KETKQIrhVNSGLCLTAPNEDDPNEPVLRP-CDGGPS-QKWELE 126
WcaA COG0463
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
154-337 2.25e-16

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 78.21  E-value: 2.25e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 154 TVIITYHNEARSsLLRTVFSVFNQSPEELllEIVLVDDNSQD--VEIGKELAQIQ-RITVLRNNQREGLIRSRVKGAQVA 230
Cdd:COG0463   5 SVVIPTYNEEEY-LEEALESLLAQTYPDF--EIIVVDDGSTDgtAEILRELAAKDpRIRVIRLERNRGKGAARNAGLAAA 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 231 RAPVLTFLDSHIECNQKWLEPLLARIAENPKAVVapiidvinvdnfnyVGASADLRGGFDWTLVFRWEFMNEQLRkerha 310
Cdd:COG0463  82 RGDYIAFLDADDQLDPEKLEELVAALEEGPADLV--------------YGSRLIREGESDLRRLGSRLFNLVRLL----- 142
                       170       180
                ....*....|....*....|....*..
gi 72000997 311 hptapIRSPTMAGGLFAISKEWFNELG 337
Cdd:COG0463 143 -----TNLPDSTSGFRLFRREVLEELG 164
beta-trefoil_Ricin_GALNT7 cd23437
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
468-582 2.04e-15

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase 7 (GALNT7) and similar proteins; GALNT7 (EC 2.4.1.41), also called polypeptide GalNAc transferase 7, GalNAc-T7, pp-GaNTase 7, protein-UDP acetylgalactosaminyltransferase 7, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 7, acts as glycopeptide transferase involved in O-linked oligosaccharide biosynthesis, which catalyzes the transfer of an N-acetyl-D-galactosamine residue to an already glycosylated peptide. In contrast to other proteins of the family, it does not act as a peptide transferase that transfers GalNAc onto serine or threonine residue on the protein receptor, but instead requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Its appropriate peptide substrate remains unidentified. GALNT7 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467315 [Multi-domain]  Cd Length: 124  Bit Score: 72.71  E-value: 2.04e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 468 GNLCLDSMARKESEAPGLFGCHGTGGNQEWVFD---QLtktfknAISQLCLDFSSNTEnkTVTMVKCeNLRPDTMVV--E 542
Cdd:cd23437  13 TGLCLDTMGHQNGGPVGLYPCHGMGGNQLFRLNeagQL------AVGEQCLTASGSGG--KVKLRKC-NLGETGKWEydE 83
                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 72000997 543 KNGWLTQG--GKCLTVNQGSGGdwLIYgAHCELNNGAQRWIF 582
Cdd:cd23437  84 ATGQIRHKgtGKCLDLNEGTNK--LIL-QPCDSSSPSQKWEF 122
Glyco_tranf_GTA_type cd00761
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
155-301 1.06e-14

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


Pssm-ID: 132997 [Multi-domain]  Cd Length: 156  Bit Score: 71.77  E-value: 1.06e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 155 VIITYHNEARSsLLRTVFSVFNQSPEELllEIVLVDDNSQD--VEIGKELAQIQ-RITVLRNNQREGLIRSRVKGAQVAR 231
Cdd:cd00761   1 VIIPAYNEEPY-LERCLESLLAQTYPNF--EVIVVDDGSTDgtLEILEEYAKKDpRVIRVINEENQGLAAARNAGLKAAR 77
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72000997 232 APVLTFLDSHIECNQKWLEPLLARIAENPK--AVVAPIIDVINVDNFNYVGASADLRGGFDWTLVFRWEFMN 301
Cdd:cd00761  78 GEYILFLDADDLLLPDWLERLVAELLADPEadAVGGPGNLLFRRELLEEIGGFDEALLSGEEDDDFLLRLLR 149
BcsA COG1215
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
154-377 9.55e-14

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 72.08  E-value: 9.55e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 154 TVIITYHNEARSsLLRTVFSVFNQSPEELLLEIVLVDDNSQD--VEIGKELA-QIQRITVLRNNQREGLIRSRVKGAQVA 230
Cdd:COG1215  32 SVIIPAYNEEAV-IEETLRSLLAQDYPKEKLEVIVVDDGSTDetAEIARELAaEYPRVRVIERPENGGKAAALNAGLKAA 110
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 231 RAPVLTFLDSHIECNQKWLEPLLARIaENPKavvapiidvinvdnfnyVGASadlrggfdwtlvfrwefmneqlrkerha 310
Cdd:COG1215 111 RGDIVVFLDADTVLDPDWLRRLVAAF-ADPG-----------------VGAS---------------------------- 144
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 72000997 311 hptapirsptmaGGLFAISKEWFNELGTYDLDMevwGGENLEMSFRVWQCGGSLEIMPCSRVGHVFR 377
Cdd:COG1215 145 ------------GANLAFRREALEEVGGFDEDT---LGEDLDLSLRLLRAGYRIVYVPDAVVYEEAP 196
beta-trefoil_Ricin_Pgant9-like cd23462
ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide ...
468-583 1.97e-13

ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide N-acetylgalactosaminyltransferase 9 (Pgant9) and similar proteins; The subfamily includes Pgant9 (also called pp-GaNTase 9, protein-UDP acetylgalactosaminyltransferase 9, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 9), Pgant4 (also called pp-GaNTase 4, N-acetylgalactosaminyltransferase 4, protein-UDP acetylgalactosaminyltransferase 4, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 4) and Pgant6 (also called pp-GaNTase 6, N-acetylgalactosaminyltransferase 6, protein-UDP acetylgalactosaminyltransferase 6, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6). They function as GalNAc transferases (EC 2.4.1.41) that catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Pgant9 can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Pgant4 and Pgant6 do not act as a peptide transferase, but instead requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. They prefer the diglycosylated Muc5AC-3/13 as a substrate. Pgant6 may have a role in protein O-glycosylation in the Golgi and thereby in establishing and/or maintaining a proper secretory apparatus structure. Members of this subfamily contain a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site.


Pssm-ID: 467340 [Multi-domain]  Cd Length: 126  Bit Score: 67.39  E-value: 1.97e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 468 GNLCLDSMARK-ESEAP-GLFGCHGTGGNQEWvfdQLTKTFKNAISQLCLDFSSntENKTVTMVKCENLRPDTM--VVEK 543
Cdd:cd23462  13 GKLCLDAPGRKkELNKPvGLYPCHGQGGNQYW---MLTKDGEIRRDDLCLDYAG--GSGDVTLYPCHGMKGNQFwiYDEE 87
                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 72000997 544 NGWLTQG--GKCLTVNQGSGgdwLIYGAHCELNNGAQRWIFE 583
Cdd:cd23462  88 TKQIVHGtsKKCLELSDDSS---KLVMEPCNGSSPRQQWEFE 126
beta-trefoil_Ricin_Pgant9-like cd23462
ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide ...
461-533 2.96e-13

ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide N-acetylgalactosaminyltransferase 9 (Pgant9) and similar proteins; The subfamily includes Pgant9 (also called pp-GaNTase 9, protein-UDP acetylgalactosaminyltransferase 9, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 9), Pgant4 (also called pp-GaNTase 4, N-acetylgalactosaminyltransferase 4, protein-UDP acetylgalactosaminyltransferase 4, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 4) and Pgant6 (also called pp-GaNTase 6, N-acetylgalactosaminyltransferase 6, protein-UDP acetylgalactosaminyltransferase 6, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6). They function as GalNAc transferases (EC 2.4.1.41) that catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Pgant9 can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Pgant4 and Pgant6 do not act as a peptide transferase, but instead requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. They prefer the diglycosylated Muc5AC-3/13 as a substrate. Pgant6 may have a role in protein O-glycosylation in the Golgi and thereby in establishing and/or maintaining a proper secretory apparatus structure. Members of this subfamily contain a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site.


Pssm-ID: 467340 [Multi-domain]  Cd Length: 126  Bit Score: 66.62  E-value: 2.96e-13
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 72000997 461 KSFQMKIGNLCLDsmARKESEAPGLFGCHGTGGNQEWVFDQLTKTFKNAISQLCLDFSSNTenKTVTMVKCEN 533
Cdd:cd23462  48 KDGEIRRDDLCLD--YAGGSGDVTLYPCHGMKGNQFWIYDEETKQIVHGTSKKCLELSDDS--SKLVMEPCNG 116
Ricin_B_lectin pfam00652
Ricin-type beta-trefoil lectin domain;
458-536 6.08e-13

Ricin-type beta-trefoil lectin domain;


Pssm-ID: 395527 [Multi-domain]  Cd Length: 126  Bit Score: 66.02  E-value: 6.08e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997   458 TPGKSFQMKIGNLCLDSMARKESEAPGLFGCHGTGGNQEWVFDQLTKTFKNAISQLCLD-FSSNTENKTVTMVKCENLRP 536
Cdd:pfam00652  43 TGDGTIRSVASDLCLDVGSTADGAKVVLWPCHPGNGNQRWRYDEDGTQIRNPQSGKCLDvSGAGTSNGKVILWTCDSGNP 122
beta-trefoil_Ricin_GALNT1 cd23466
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
469-535 1.81e-12

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase 1 (GALNT1) and similar proteins; GALNT1 (EC 2.4.1.41), also called polypeptide GalNAc transferase 1, GalNAc-T1, pp-GaNTase 1, protein-UDP acetylgalactosaminyltransferase 1, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1, catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. It has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7. GALNT1 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain is required in the glycopeptide specificity of enzyme activity but not for activity with naked peptide substrates, suggesting that it triggers the catalytic domain to act on GalNAc-glycopeptide substrates.


Pssm-ID: 467344  Cd Length: 127  Bit Score: 64.68  E-value: 1.81e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 72000997 469 NLCLDSMARKESEAPGLFGCHGTGGNQewVFdQLTKTFKNAISQLCLDFSSntENKTVTMVKCENLR 535
Cdd:cd23466  15 NQCLDNMARKENEKVGIFNCHGMGGNQ--VF-SYTANKEIRTDDLCLDVSK--LNGPVMMLKCHHLK 76
WcaE COG1216
Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism];
150-378 3.33e-12

Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism];


Pssm-ID: 440829 [Multi-domain]  Cd Length: 202  Bit Score: 65.78  E-value: 3.33e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 150 MQPTT--VIITYHNEARssLLRTVFSVFNQSPEELllEIVLVDDNSQDvEIGKELAQIQ--RITVLRNNQREGLIRSRVK 225
Cdd:COG1216   1 MRPKVsvVIPTYNRPEL--LRRCLESLLAQTYPPF--EVIVVDNGSTD-GTAELLAALAfpRVRVIRNPENLGFAAARNL 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 226 GAQVARAPVLTFLDSHIECNQKWLEPLLAriaenpkavvapiidvinvdnfnyvgasadlrggfdwtlvfrwefmneqlr 305
Cdd:COG1216  76 GLRAAGGDYLLFLDDDTVVEPDWLERLLA--------------------------------------------------- 104
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 72000997 306 kerhahptapirsptmAGGLFaISKEWFNELGTYDLDMEVWGGEnLEMSFRVWQCGGSLEIMPCSRVGHVFRK 378
Cdd:COG1216 105 ----------------AACLL-IRREVFEEVGGFDERFFLYGED-VDLCLRLRKAGYRIVYVPDAVVYHLGGA 159
beta-trefoil_Ricin_GALNT10-like cd23439
ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide ...
466-531 9.04e-12

ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide N-acetylgalactosaminyltransferase 10 (GALNT10)-like subfamily; The GALNT10-like subfamily includes GALNT10 and GALNTL6. They act as GalNAc transferases (EC 2.4.1.41) that catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT10 has activity toward Muc5Ac and EA2 peptide substrates. Members of this subfamily comprise a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467317 [Multi-domain]  Cd Length: 126  Bit Score: 62.36  E-value: 9.04e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 72000997 466 KIGNLCLDSMARKESEAPGLFGCHGTGGNQEWVFDQLTKTFKNAISQLCLDfsSNTENKTVTMVKC 531
Cdd:cd23439  52 KKRKVCFDVSSHTPGAPVILYACHGMKGNQLWKYRPNTKQLYHPVSGLCLD--ADPGSGKVFMNHC 115
beta-trefoil_Ricin_GALNT13 cd23467
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
469-539 1.06e-11

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase 13 (GALNT13) and similar proteins; GALNT13 (EC 2.4.1.41), also called polypeptide GalNAc transferase 13, GalNAc-T13, pp-GaNTase 13, protein-UDP acetylgalactosaminyltransferase 13, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13, catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. It has a much stronger activity than GALNT1 to transfer GalNAc to mucin peptides, such as Muc5Ac and Muc7. It can glycosylate SDC3. It may be responsible for the synthesis of Tn antigen in neuronal cells. GALNT13 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). The model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467345  Cd Length: 127  Bit Score: 62.35  E-value: 1.06e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 72000997 469 NLCLDSMARKESEAPGLFGCHGTGGNQ--EWVFDQLTKTfknaiSQLCLDFSSntENKTVTMVKCENLRPDTM 539
Cdd:cd23467  15 NQCLDNMGRKENEKVGIFNCHGMGGNQvfSYTADKEIRT-----DDLCLDVSR--LNGPVVMLKCHHMRGNQL 80
GT_2_like_c cd04186
Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse ...
155-374 6.17e-10

Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133029 [Multi-domain]  Cd Length: 166  Bit Score: 58.34  E-value: 6.17e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 155 VIITYHNEARSsLLRTVFSVFNQSPEelLLEIVLVDDNSQDVEIGKELAQIQRITVLRNNQREGLIRSRVKGAQVARAPV 234
Cdd:cd04186   1 IIIVNYNSLEY-LKACLDSLLAQTYP--DFEVIVVDNASTDGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDY 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 235 LTFLDSHIECNQKWLEPLLARIAENPKAVVApiidvinvdnfnyvgasadlrggfdwtlvfrwefmneqlrkerhahpta 314
Cdd:cd04186  78 VLLLNPDTVVEPGALLELLDAAEQDPDVGIV------------------------------------------------- 108
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 315 pirSPTMAGGLFAISKEWFNELGTYDLDMEVWgGENLEMSFRVWQCGGSLEIMPCSRVGH 374
Cdd:cd04186 109 ---GPKVSGAFLLVRREVFEEVGGFDEDFFLY-YEDVDLCLRARLAGYRVLYVPQAVIYH 164
beta-trefoil_Ricin_Pgant1-like cd23459
ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide ...
467-584 4.03e-09

ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide N-acetylgalactosaminyltransferase 1 (Pgant1) and similar proteins; Pgant1, also called pp-GaNTase 1, protein-UDP acetylgalactosaminyltransferase 1, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1, functions as a GalNAc transferase (EC 2.4.1.41) that catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Pgant1 can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. It prefers the monoglycosylated Muc5AC-3 as a substrate. Members of this subfamily contain a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site.


Pssm-ID: 467337 [Multi-domain]  Cd Length: 132  Bit Score: 55.02  E-value: 4.03e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 467 IGNLCLDSMAR--KESEAPGLFGCHGTG-GNQewVFdQLTKTfknaiSQL-----CLDfSSNTENKTVTMVKCENLRPDT 538
Cdd:cd23459  14 GTNLCLDTLQRdeDKGYNLGLYPCQGGLsSNQ--LF-SLSKK-----GELrreesCAD-VQGTEESKVILITCHGLEKFN 84
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 72000997 539 M--VVEKNGWL--TQGGKCLTV-NQGSGGDWLIygAHCELNNgAQRWIFEK 584
Cdd:cd23459  85 QkwKHTKGGQIvhLASGKCLDAeGLKSGDDVTL--AKCDGSL-SQKWTFEH 132
beta-trefoil_Ricin_GALNT3-like cd23435
ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide ...
469-583 6.21e-09

ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide N-acetylgalactosaminyltransferase 3 (GALNT3)-like subfamily; The GALNT3-like subfamily includes GALNT3, GALNT4, GALNT6 and GALNT12. They act as GalNAc transferases (EC 2.4.1.41) that catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT3 has activity toward HIV envelope glycoprotein gp120, EA2, Muc2 and Muc5. It probably glycosylates fibronectin in vivo as well as FGF23. It plays a central role in phosphate homeostasis. GALNT4 shows highest activity towards Muc7, EA2 and Muc2, with a lower activity compared to GALNT2. It glycosylates 'Thr-57' of SELPLG. GALNT6 may participate in the synthesis of oncofetal fibronectin. It has activity toward Muc1a, Muc2, EA2 and fibronectin peptides. GALNT12 has activity toward non-glycosylated peptides such as Muc5AC, Muc1a and EA2, and no detectable activity with non-glycosylated Muc2 and Muc7. It displays enzymatic activity toward the Gal-NAc-Muc5AC glycopeptide, but no detectable activity to mono-GalNAc-glycosylated Muc1a, Muc2, Muc7 and EA2. It may play an important role in the initial step of mucin-type oligosaccharide biosynthesis in digestive organs. Members of this family comprise a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which are characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467313 [Multi-domain]  Cd Length: 128  Bit Score: 54.26  E-value: 6.21e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 469 NLCLDSmarKESEAPG-----LFGCHGTGGNQewvFDQLTKTFK---NAISQLCLdfsSNTENKTVTMVKCEnlRPDTMV 540
Cdd:cd23435  13 ELCLDV---NNPNGQGgkpviMYGCHGLGGNQ---YFEYTSKGEirhNIGKELCL---HASGSDEVILQHCT--SKGKDV 81
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 72000997 541 VEKNGWL-TQGG--------KCLTVNQGSggdwlIYGAHCELNNGAQRWIFE 583
Cdd:cd23435  82 PPEQKWLfTQDGtirnpasgLCLHASGYK-----VLLRTCNPSDDSQKWTFI 128
beta-trefoil_Ricin_Pgant3-like cd23460
ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide ...
464-533 1.72e-08

ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide N-acetylgalactosaminyltransferase 3 (Pgant3) and similar proteins; Pgant3, also called pp-GaNTase 3, protein-UDP acetylgalactosaminyltransferase 3, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3, functions as a GalNAc transferase (EC 2.4.1.41) that catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Pgant3 can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. It prefers EA2 as a substrate and has weak activity toward Muc5AC-3, -13 and -3/13 substrates. Pgant3 plays a critical role in the regulation of integrin-mediated cell adhesion during wing development by influencing, via glycosylation, the secretion and localization of the integrin ligand Tig to the basal cell layer interface. It may have a role in protein O-glycosylation in the Golgi and thereby in establishing and/or maintaining a proper secretory apparatus structure. Together with Pgant35A, Pgant3 regulates integrin levels and activity-dependent integrin signaling at the synapse in neurons and muscles. Members of this subfamily contain a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site.


Pssm-ID: 467338 [Multi-domain]  Cd Length: 121  Bit Score: 52.83  E-value: 1.72e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 464 QMKIGNLCLDSmarKESEAPGLFGCHGTGGNQEWVFDQLTKTFKNAISQLCLDFSSNteNKTVTMVKCEN 533
Cdd:cd23460  47 QIRQDHLCLTA---DEGNKVTLRECADQLPSQEWSYDEKTGTIRHRSTGLCLTLDAN--NDVVILKECDS 111
DPM_DPG-synthase_like cd04179
DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; DPM1 is the ...
155-264 6.72e-08

DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.


Pssm-ID: 133022 [Multi-domain]  Cd Length: 185  Bit Score: 52.96  E-value: 6.72e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 155 VIITYHNEARS--SLLRTVFSVFNQSPEellLEIVLVDDNSQD--VEIGKELAQI-QRITVLRNNQREGLIRSRVKGAQV 229
Cdd:cd04179   1 VVIPAYNEEENipELVERLLAVLEEGYD---YEIIVVDDGSTDgtAEIARELAARvPRVRVIRLSRNFGKGAAVRAGFKA 77
                        90       100       110
                ....*....|....*....|....*....|....*....
gi 72000997 230 ARAPVLTFLDS----HIECnqkwLEPLLARIAENPKAVV 264
Cdd:cd04179  78 ARGDIVVTMDAdlqhPPED----IPKLLEKLLEGGADVV 112
CESA_like cd06423
CESA_like is the cellulose synthase superfamily; The cellulose synthase (CESA) superfamily ...
155-343 8.32e-08

CESA_like is the cellulose synthase superfamily; The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.


Pssm-ID: 133045 [Multi-domain]  Cd Length: 180  Bit Score: 52.23  E-value: 8.32e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 155 VIITYHNEARSsLLRTVFSVFNQSPEELllEIVLVDDNSQD--VEIGKELA--QIQRITVLRNNQREGlirsrvK----- 225
Cdd:cd06423   1 IIVPAYNEEAV-IERTIESLLALDYPKL--EVIVVDDGSTDdtLEILEELAalYIRRVLVVRDKENGG------Kagaln 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 226 -GAQVARAPVLTFLD--SHIEcnQKWLEPLLARIAENPKAV-VAPIIDVINvDNFNYVGASADLRggfdWTLVFRWEFMN 301
Cdd:cd06423  72 aGLRHAKGDIVVVLDadTILE--PDALKRLVVPFFADPKVGaVQGRVRVRN-GSENLLTRLQAIE----YLSIFRLGRRA 144
                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 72000997 302 EQLRKerhahptapiRSPTMAGGLFAISKEWFNELGTYDLDM 343
Cdd:cd06423 145 QSALG----------GVLVLSGAFGAFRREALREVGGWDEDT 176
GT_2_like_e cd04192
Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse ...
155-349 4.21e-07

Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133035 [Multi-domain]  Cd Length: 229  Bit Score: 51.14  E-value: 4.21e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 155 VIITYHNEARSsLLRTVFSVFNQS-PEELLlEIVLVDDNSQD--VEIGKELAQIQ--RITVLRNNQREGlirSRVK---- 225
Cdd:cd04192   1 VVIAARNEAEN-LPRLLQSLSALDyPKEKF-EVILVDDHSTDgtVQILEFAAAKPnfQLKILNNSRVSI---SGKKnalt 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 226 -GAQVARAPVLTFLDSHIECNQKWLEPLLARIA-ENPKAVVAPII---------DVINVDNFNYVGASAdlrGGFDWTLv 294
Cdd:cd04192  76 tAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQkEQIGLVAGPVIyfkgksllaKFQRLDWLSLLGLIA---GSFGLGK- 151
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 72000997 295 frwefmneqlrkerhahptapirsPTMAGGL-FAISKEWFNELGTYDLDMEVWGGE 349
Cdd:cd04192 152 ------------------------PFMCNGAnMAYRKEAFFEVGGFEGNDHIASGD 183
Glyco_tranf_2_3 pfam13641
Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include ...
153-379 5.16e-07

Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.


Pssm-ID: 433372 [Multi-domain]  Cd Length: 230  Bit Score: 50.83  E-value: 5.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997   153 TTVIITYHNEArSSLLRTVFSVFNQspEELLLEIVLVDDNSQD--VEIGKELAQI---QRITVLRNNQREGL---IRSRV 224
Cdd:pfam13641   4 VSVVVPAFNED-SVLGRVLEAILAQ--PYPPVEVVVVVNPSDAetLDVAEEIAARfpdVRLRVIRNARLLGPtgkSRGLN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997   225 KGAQVARAPVLTFLDShiEC-NQKWLEPLLARIAENPKavVAPIIDVINVDNFNYVgasadlrggfdWTLVFRWEFMNEQ 303
Cdd:pfam13641  81 HGFRAVKSDLVVLHDD--DSvLHPGTLKKYVQYFDSPK--VGAVGTPVFSLNRSTM-----------LSALGALEFALRH 145
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 72000997   304 LRKERHAHPtapIRSPTMAGGLFAISKEWFNELGTYDLdmevWG--GENLEMSFRVWQCGGSLEIMPCSRVGHVFRKK 379
Cdd:pfam13641 146 LRMMSLRLA---LGVLPLSGAGSAIRREVLKELGLFDP----FFllGDDKSLGRRLRRHGWRVAYAPDAAVRTVFPTY 216
Succinoglycan_BP_ExoA cd02525
ExoA is involved in the biosynthesis of succinoglycan; Succinoglycan Biosynthesis Protein ExoA ...
154-364 5.25e-07

ExoA is involved in the biosynthesis of succinoglycan; Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.


Pssm-ID: 133016 [Multi-domain]  Cd Length: 249  Bit Score: 51.08  E-value: 5.25e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 154 TVIITYHNEARSsLLRTVFSVFNQSPEELLLEIVLVDDNSQD--VEIGKELAQIQ-RITVLRNNQReglIRS--RVKGAQ 228
Cdd:cd02525   3 SIIIPVRNEEKY-IEELLESLLNQSYPKDLIEIIVVDGGSTDgtREIVQEYAAKDpRIRLIDNPKR---IQSagLNIGIR 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 229 VARAPVLTFLDSHIECNQKWLEPLLARIAENPKAVVAPIIDVINVDNFN----YVGASADLRGGfdwtLVFRwefmneQL 304
Cdd:cd02525  79 NSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQkaiaVAQSSPLGSGG----SAYR------GG 148
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 305 RKERHAHPTAPirsptmaGGLFaiSKEWFNELGTYDLDMEVwgGENLEMSFRVWQCGGSL 364
Cdd:cd02525 149 AVKIGYVDTVH-------HGAY--RREVFEKVGGFDESLVR--NEDAELNYRLRKAGYKI 197
beta-trefoil_Ricin_Pgant3-like cd23460
ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide ...
469-582 7.18e-07

ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide N-acetylgalactosaminyltransferase 3 (Pgant3) and similar proteins; Pgant3, also called pp-GaNTase 3, protein-UDP acetylgalactosaminyltransferase 3, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3, functions as a GalNAc transferase (EC 2.4.1.41) that catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Pgant3 can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. It prefers EA2 as a substrate and has weak activity toward Muc5AC-3, -13 and -3/13 substrates. Pgant3 plays a critical role in the regulation of integrin-mediated cell adhesion during wing development by influencing, via glycosylation, the secretion and localization of the integrin ligand Tig to the basal cell layer interface. It may have a role in protein O-glycosylation in the Golgi and thereby in establishing and/or maintaining a proper secretory apparatus structure. Together with Pgant35A, Pgant3 regulates integrin levels and activity-dependent integrin signaling at the synapse in neurons and muscles. Members of this subfamily contain a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site.


Pssm-ID: 467338 [Multi-domain]  Cd Length: 121  Bit Score: 48.21  E-value: 7.18e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 469 NLCLDSMARKESEA-PGLFGCHGTGGNQEWVFdqltkTFKNAISQ--LCLdfsSNTENKTVTMVKCENLRPDTMVV--EK 543
Cdd:cd23460  11 GLCLDWAGESNGDKtVALKPCHGGGGNQFWMY-----TGDGQIRQdhLCL---TADEGNKVTLRECADQLPSQEWSydEK 82
                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 72000997 544 NGWL----TqgGKCLTVNQgsgGDWLIYGAHCELNNGAQRWIF 582
Cdd:cd23460  83 TGTIrhrsT--GLCLTLDA---NNDVVILKECDSNSLWQKWIF 120
beta-trefoil_Ricin-like cd00161
ricin B-type lectin domain, beta-trefoil fold; The ricin B-type lectin domain is a ...
469-580 8.12e-07

ricin B-type lectin domain, beta-trefoil fold; The ricin B-type lectin domain is a carbohydrate-binding domain formed from presumed gene triplication. It shows a beta-trefoil fold characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain was originally found in Ricin, which is a legume lectin from the seeds of the castor bean plant, Ricinus communis. It is also found in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases, or proteases, which serve diverse functions such as inhibitory toxicity, enzymatic activity, and signal transduction. The ricin B-type lectin domain can be present in one or more copies and has been shown in some instances to bind simple sugars, such as galactose or lactose. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B-type lectin domain has also been referred as the (QxW)3 domain and the three homologous regions as the QxW repeats. A disulfide bond is also conserved in some QxW repeats.


Pssm-ID: 467293 [Multi-domain]  Cd Length: 134  Bit Score: 48.52  E-value: 8.12e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 469 NLCLDsmARKESEAPG----LFGCHGtGGNQEWVFDQLTK---TFKNAISQLCLDFS--SNTENKTVTMVKCENLRPDTM 539
Cdd:cd00161  11 GKCLD--VAGGSTANGapvqQWTCNG-GANQQWTLTPVGDgyyTIRNVASGKCLDVAggSTANGANVQQWTCNGGDNQQW 87
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 72000997 540 VVEKNGWLT------QGGKCLTVNQGSGGDwliyGAHCEL----NNGAQRW 580
Cdd:cd00161  88 RLEPVGDGYyrivnkHSGKCLDVSGGSTAN----GANVQQwtcnGGANQQW 134
DPM1_like cd06442
DPM1_like represents putative enzymes similar to eukaryotic DPM1; Proteins similar to ...
155-241 8.89e-07

DPM1_like represents putative enzymes similar to eukaryotic DPM1; Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.


Pssm-ID: 133062 [Multi-domain]  Cd Length: 224  Bit Score: 50.22  E-value: 8.89e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 155 VII-TYhNEAR--SSLLRTVFSVFnqspEELLLEIVLVDDNSQD--VEIGKELAQIQ-RITVLRNNQREGLIRSRVKGAQ 228
Cdd:cd06442   1 IIIpTY-NEREniPELIERLDAAL----KGIDYEIIVVDDNSPDgtAEIVRELAKEYpRVRLIVRPGKRGLGSAYIEGFK 75
                        90
                ....*....|....*.
gi 72000997 229 VARAPVLTFLD---SH 241
Cdd:cd06442  76 AARGDVIVVMDadlSH 91
Glyco_transf_7C pfam02709
N-terminal domain of galactosyltransferase; This is the N-terminal domain of a family of ...
315-381 1.17e-06

N-terminal domain of galactosyltransferase; This is the N-terminal domain of a family of galactosyltransferases from a wide range of Metazoa with three related galactosyltransferases activities, all three of which are possessed by one sequence in some cases. EC:2.4.1.90, N-acetyllactosamine synthase; EC:2.4.1.38, Beta-N-acetylglucosaminyl-glycopeptide beta-1,4- galactosyltransferase; and EC:2.4.1.22 Lactose synthase. Note that N-acetyllactosamine synthase is a component of Lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin EC:2.4.1.90 is the catalyzed reaction.


Pssm-ID: 460659 [Multi-domain]  Cd Length: 78  Bit Score: 46.45  E-value: 1.17e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 72000997   315 PIRSPTMAGGLFAISKEWFNELGTYDLDMEVWGGENLEMSFRVWQCGGSLEImPCSRVGHVFRKKHP 381
Cdd:pfam02709  13 KLPYKTYFGGVLALSREDFERINGFSNGFWGWGGEDDDLYNRLLLAGLEIER-PPGDIGRYYMLYHK 78
beta-trefoil_Ricin_Pgant8-like cd23461
ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide ...
469-582 1.24e-06

ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide N-acetylgalactosaminyltransferase 8 (Pgant8) and similar proteins; This subfamily includes Pgant8 (also called pp-GaNTase 8, protein-UDP acetylgalactosaminyltransferase 8, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 8), Pgant10 (also called polypeptide N-acetylgalactosaminyltransferase 10, pp-GaNTase 10, protein-UDP acetylgalactosaminyltransferase 10, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 10), Pgant11 (also called polypeptide N-acetylgalactosaminyltransferase 11, pp-GaNTase 11, protein-UDP acetylgalactosaminyltransferase 11, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 11) and Pgant12 (also called polypeptide N-acetylgalactosaminyltransferase 12, pp-GaNTase 12, protein-UDP acetylgalactosaminyltransferase 12, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 12). They function as GalNAc transferases (EC 2.4.1.41) that catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Pgant8 can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. It prefers both EA2 and the diglycosylated Muc5AC-3/13 as substrates, albeit at very low levels for Muc5AC-3/13. Members of this subfamily contain a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site.


Pssm-ID: 467339  Cd Length: 128  Bit Score: 47.78  E-value: 1.24e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 469 NLCLDSMARKESEAPGLFGCHGT----GGNQEWVFDQLtKTFKNAISQLCLDfssnTENKTVTMVKCENLR--------P 536
Cdd:cd23461  13 NLCLDILGRSHGGPPVLAKCSSNksmpGTFQNFSLTFH-RQIKHGTSDDCLE----VRGNNVRLSRCHYQGgnqywkydY 87
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 72000997 537 DTMVVeKNGWltQGGKCLTVNQGSGGdwlIYGAHCELNNGAQRWIF 582
Cdd:cd23461  88 ETHQL-INGG--QNNKCLEADVESLK---ITLSICDSDNVEQKWKW 127
beta-trefoil_Ricin_GALNT11 cd23440
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
464-531 1.59e-06

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase 11 (GALNT11) and similar proteins; GALNT11 (EC 2.4.1.41), also called polypeptide GalNAc transferase 11, GalNAc-T11, pp-GaNTase 11, protein-UDP acetylgalactosaminyltransferase 11, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 11, catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. It is involved in left/right asymmetry by mediating O-glycosylation of NOTCH1. O-glycosylation of NOTCH1 promotes its activation, modulating the balance between motile and immotile (sensory) cilia at the left-right organizer (LRO). GALNT11 displays the same enzyme activity toward MUC1, MUC4, and EA2 as GALNT1. It is not involved in glycosylation of erythropoietin (EPO). GALNT11 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467318 [Multi-domain]  Cd Length: 127  Bit Score: 47.37  E-value: 1.59e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 72000997 464 QMKIGN-LCLDsMARKESEAPGLFGCHGTGGNQEWVFDQLTKTFkNAISQLCLDFSSNTENKTVTMVKC 531
Cdd:cd23440  51 ELRLANlLCLD-SSETSSDFPRLMKCHGSGGSQQWRFKKDNRLY-NPASGQCLAASKNGTSGYVTMDIC 117
beta-trefoil_Ricin_AH cd23415
ricin B-type lectin domain, beta-trefoil fold, found in Actinomycete actinohivin and similar ...
469-580 5.45e-05

ricin B-type lectin domain, beta-trefoil fold, found in Actinomycete actinohivin and similar proteins; Actinohivin is an actinomycete lectin with a potent specific anti-human immunodeficiency virus (anti-HIV) activity. It inhibits viral entry to cells by binding the high-mannose type sugar chains of gp120. Actinohivin contains a ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain contains a sugar-binding pocket.


Pssm-ID: 467294 [Multi-domain]  Cd Length: 120  Bit Score: 42.81  E-value: 5.45e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 469 NLCLDSMArkeSEAPGLFGCHGtGGNQEWVFDQL---TKTFKNAISQLCLDfssNTENKTVTMVKCENLRPDTMVVEKNG 545
Cdd:cd23415  11 GRCLDSNA---GGNVYTGPCNG-GPYQRWTWSGVgdgTVTLRNAATGRCLD---SNGNGGVYTLPCNGGSYQRWRVTSTS 83
                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 72000997 546 WLT------QGGKCLTVNqGSGGdwlIYGAHCElNNGAQRW 580
Cdd:cd23415  84 GGGvtlrnvATGRCLDSN-GSGG---VYTRPCN-GGSYQRW 119
beta-trefoil_Ricin_Pgant8-like cd23461
ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide ...
461-531 1.41e-04

ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide N-acetylgalactosaminyltransferase 8 (Pgant8) and similar proteins; This subfamily includes Pgant8 (also called pp-GaNTase 8, protein-UDP acetylgalactosaminyltransferase 8, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 8), Pgant10 (also called polypeptide N-acetylgalactosaminyltransferase 10, pp-GaNTase 10, protein-UDP acetylgalactosaminyltransferase 10, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 10), Pgant11 (also called polypeptide N-acetylgalactosaminyltransferase 11, pp-GaNTase 11, protein-UDP acetylgalactosaminyltransferase 11, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 11) and Pgant12 (also called polypeptide N-acetylgalactosaminyltransferase 12, pp-GaNTase 12, protein-UDP acetylgalactosaminyltransferase 12, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 12). They function as GalNAc transferases (EC 2.4.1.41) that catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Pgant8 can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. It prefers both EA2 and the diglycosylated Muc5AC-3/13 as substrates, albeit at very low levels for Muc5AC-3/13. Members of this subfamily contain a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site.


Pssm-ID: 467339  Cd Length: 128  Bit Score: 42.01  E-value: 1.41e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 72000997 461 KSFQMKIGNLCLDSmarkESEAPGLFGCHGTGGNQEWVFDQLTKTFKN-AISQLCLDFssNTENKTVTMVKC 531
Cdd:cd23461  51 RQIKHGTSDDCLEV----RGNNVRLSRCHYQGGNQYWKYDYETHQLINgGQNNKCLEA--DVESLKITLSIC 116
beta-trefoil_Ricin_SCDase_rpt2 cd23500
second ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ...
462-581 1.42e-04

second ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ceramide N-deacylase (SCDase) and similar proteins; SCDase (EC 3.5.1.69) is an enzyme which hydrolyzes the N-acyl linkage between fatty acid and sphingosine in ceramide of various glycosphingolipids and sphingomyelin. Shewanella algae SCDase contains two ricin B-type lectin domains at its C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. The model corresponds to the second lectin domain.


Pssm-ID: 467378 [Multi-domain]  Cd Length: 128  Bit Score: 42.07  E-value: 1.42e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 462 SFQMKIGNLCLDsmARKESEAPG----LFGCHGTGgNQEWVFDQLTKTFKNAI-SQLCLDF-SSNTENKT-VTMVKCENL 534
Cdd:cd23500   4 TYRSKRSGKCLS--AANGSQLNGslvqLDACHASA-GQLWYFDPKKGTIRSALdGNKCLAIpGGNTGNHTqLQLADCDAS 80
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 72000997 535 RPDTMvVEKNGWL----TQGGKCLTVNQGSGGDWLI-YGAHCELNngaQRWI 581
Cdd:cd23500  81 NPAQQ-FNYDGGVfrsrLNSNQVIDASGGSDGSELIlYDYHGGSN---QRWR 128
DPG_synthase cd04188
DPG_synthase is involved in protein N-linked glycosylation; UDP-glucose:dolichyl-phosphate ...
155-265 2.80e-04

DPG_synthase is involved in protein N-linked glycosylation; UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.


Pssm-ID: 133031 [Multi-domain]  Cd Length: 211  Bit Score: 42.55  E-value: 2.80e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 155 VIITYHNEARSsLLRTVFSVFNQSPEELLL--EIVLVDDNSQD--VEIGKELA--QIQRITVLRNNQREGlirsrvKGAQ 228
Cdd:cd04188   1 VVIPAYNEEKR-LPPTLEEAVEYLEERPSFsyEIIVVDDGSKDgtAEVARKLArkNPALIRVLTLPKNRG------KGGA 73
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 72000997 229 V------ARAPVLTFLD----SHIECnqkwLEPLL-ARIAENPKAVVA 265
Cdd:cd04188  74 VragmlaARGDYILFADadlaTPFEE----LEKLEeALKTSGYDIAIG 117
DPM1_like_bac cd04187
Bacterial DPM1_like enzymes are related to eukaryotic DPM1; A family of bacterial enzymes ...
155-214 3.15e-04

Bacterial DPM1_like enzymes are related to eukaryotic DPM1; A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.


Pssm-ID: 133030 [Multi-domain]  Cd Length: 181  Bit Score: 42.08  E-value: 3.15e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 72000997 155 VIITYHNEARS--SLLRTVFSVFNQSPEELllEIVLVDDNSQD--VEIGKELA-QIQRITVLRNN 214
Cdd:cd04187   1 IVVPVYNEEENlpELYERLKAVLESLGYDY--EIIFVDDGSTDrtLEILRELAaRDPRVKVIRLS 63
CESA_like_1 cd06439
CESA_like_1 is a member of the cellulose synthase (CESA) superfamily; This is a subfamily of ...
151-261 3.53e-04

CESA_like_1 is a member of the cellulose synthase (CESA) superfamily; This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.


Pssm-ID: 133061 [Multi-domain]  Cd Length: 251  Bit Score: 42.57  E-value: 3.53e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 151 QPT-TVIITYHNEARSsLLRTVFSVFNQSPEELLLEIVLVDDNSQD--VEIGKELAQiQRITVLRNNQREGLIRSRVKGA 227
Cdd:cd06439  28 LPTvTIIIPAYNEEAV-IEAKLENLLALDYPRDRLEIIVVSDGSTDgtAEIAREYAD-KGVKLLRFPERRGKAAALNRAL 105
                        90       100       110
                ....*....|....*....|....*....|....*...
gi 72000997 228 QVARAPVLTFLDShiecNQKWlEP----LLARIAENPK 261
Cdd:cd06439 106 ALATGEIVVFTDA----NALL-DPdalrLLVRHFADPS 138
beta-trefoil_Ricin_GALNTL6 cd23477
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
459-534 6.12e-04

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase-like 6 (GALNTL6) and similar proteins; GALNTL6 (EC 2.4.1.41), also called polypeptide GalNAc transferase 17, GalNAc-T17, pp-GaNTase 17, protein-UDP acetylgalactosaminyltransferase 17, putative polypeptide N-acetylgalactosaminyltransferase 17, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 17, catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNTL6 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467355  Cd Length: 148  Bit Score: 40.69  E-value: 6.12e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 72000997 459 PGKSFQMKigNLCLDSMArkESEAPGLFGCHGTGGNQEWVFDQlTKTFKNAISQLCLDfsSNTENKTVTMVKCENL 534
Cdd:cd23477  60 PGEPLHTR--KFCFDAIS--HNSPVTLYDCHGMKGNQLWSYRK-DKTLFHPVSNSCMD--CNPADKKIFMNRCDPL 128
beta-trefoil_Ricin_GALNT4 cd23469
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
465-583 6.14e-04

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase 4 (GALNT4) and similar proteins; GALNT4 (EC 2.4.1.41), also called polypeptide GalNAc transferase 4, GalNAc-T4, pp-GaNTase 4, protein-UDP acetylgalactosaminyltransferase 4, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 4, catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT4 shows highest activity towards Muc7, EA2 and Muc2, with a lower activity compared to GALNT2. It glycosylates 'Thr-57' of SELPLG. GALNT4 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467347  Cd Length: 136  Bit Score: 40.27  E-value: 6.14e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 465 MKIGNLCLDSMArKESEAPG----LFGCHGTGGNQEWVFDQLTKTFKNAISQLCLDFssnTENKT-VTMVKCE---NLRP 536
Cdd:cd23469  10 MGISSECLDYNS-PEHNPTGahlsLFGCHGQGGNQFFEYTSNKEIRFNSVTELCAEV---PDQKNyIGMKHCPkdgSPVP 85
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 72000997 537 DTMVVE--KNGWL--TQGGKCLTVNQGSGGDWLIYGAHCELNNGAQRWIFE 583
Cdd:cd23469  86 ANIIWHfkEDGTIyhPHSGMCISAYRTPEGRADVQMRTCDAGDKNQLWSFE 136
beta-trefoil_Ricin_GALNT3 cd23468
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
467-582 7.63e-04

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase 3 (GALNT3) and similar proteins; GALNT3 (EC 2.4.1.41), also called polypeptide GalNAc transferase 3, GalNAc-T3, pp-GaNTase 3, protein-UDP acetylgalactosaminyltransferase 3, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3, catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT3 has activity toward HIV envelope glycoprotein gp120, EA2, Muc2 and Muc5. It probably glycosylates fibronectin in vivo as well as FGF23. It plays a central role in phosphate homeostasis. GALNT3 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467346  Cd Length: 129  Bit Score: 39.79  E-value: 7.63e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 467 IGN-LCLDSMARKESEAPG-LFGCHGTGGNQEWVFDQLTKTFKNAISQLCLDFSsnteNKTVTMVKCENLRPDTMVVEKN 544
Cdd:cd23468  11 VGKeLCLDVGENNHGGKPLiMYNCHGLGGNQYFEYSTHHEIRHNIQKELCLHGS----QGSVQLKECTYKGRNTAVLPEE 86
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 72000997 545 GWLTQGGK---------CLTVNqgsggdwliyGAH-----CELNNGAQRWIF 582
Cdd:cd23468  87 KWELQKDQllynpalnmCLSAN----------GENpslvpCNPSDPFQQWIF 128
beta-trefoil_Ricin_GALNT14-like cd23441
ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide ...
464-583 1.80e-03

ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide N-acetylgalactosaminyltransferase 14 (GALNT14)-like subfamily; The GALNT14-like subfamily includes GALNT14 and GALNT16. They act as GalNAc transferases (EC 2.4.1.41) that catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT14 displays activity toward mucin-derived peptide substrates such as Muc2, Muc5AC, Muc7, and Muc13 (-58). It may be involved in O-glycosylation in the kidney. Members of this subfamily comprise a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467319 [Multi-domain]  Cd Length: 122  Bit Score: 38.54  E-value: 1.80e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000997 464 QMKIGNLCLDSMARK--ESEAPGLFGCHGTGGNQEWVFdqlTKTfkNAISQ--LCLDFSSNTENKTVTMVKCENLRPDTm 539
Cdd:cd23441   7 QIKQGNLCLDSDEQLfqGPALLILAPCSNSSDSQEWSF---TKD--GQLQTqgLCLTVDSSSKDLPVVLETCSDDPKQK- 80
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 72000997 540 vvekngWLTQG--------GKCLTVNQGSGgdwLIYgAHCELNNGAQRWIFE 583
Cdd:cd23441  81 ------WTRTGrqlvhsesGLCLDSRKKKG---LVV-SPCRSGAPSQKWDFT 122
GT_2_like_d cd04196
Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse ...
173-239 7.14e-03

Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133039 [Multi-domain]  Cd Length: 214  Bit Score: 38.38  E-value: 7.14e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 72000997 173 SVFNQSpeELLLEIVLVDDNSQD--VEIGKELAQI--QRITVLRNNQREGLIRSRVKGAQVARAPVLTFLD 239
Cdd:cd04196  19 SILAQT--YKNDELIISDDGSTDgtVEIIKEYIDKdpFIIILIRNGKNLGVARNFESLLQAADGDYVFFCD 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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