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Conserved domains on  [gi|922580754|ref|NP_001024244|]
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7TM_GPCR_Srx domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
7TM_GPCR_Srt super family cl12383
Serpentine type 7TM GPCR chemoreceptor Srt; Chemoreception is mediated in Caenorhabditis ...
 3-61 2.63e-19

Serpentine type 7TM GPCR chemoreceptor Srt; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


The actual alignment was detected with superfamily member pfam10321:

Pssm-ID: 402096  Cd Length: 313  Bit Score: 79.18  E-value: 2.63e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 922580754    3 NFIAAMVYVYMQFFPVADFVIVIGHMSWQLGHGCPAIIYLFMNTTIRSGVSKIFRFKKP 61
Cdd:pfam10321 251 HAIAAIIYVYMQFFYPPPWLILIGQIAWQLSHGCPCIIYLTLNRTIRNGVLKLLGPKKI 309
 
Name Accession Description Interval E-value
7TM_GPCR_Srt pfam10321
Serpentine type 7TM GPCR chemoreceptor Srt; Chemoreception is mediated in Caenorhabditis ...
 3-61 2.63e-19

Serpentine type 7TM GPCR chemoreceptor Srt; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 402096  Cd Length: 313  Bit Score: 79.18  E-value: 2.63e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 922580754    3 NFIAAMVYVYMQFFPVADFVIVIGHMSWQLGHGCPAIIYLFMNTTIRSGVSKIFRFKKP 61
Cdd:pfam10321 251 HAIAAIIYVYMQFFYPPPWLILIGQIAWQLSHGCPCIIYLTLNRTIRNGVLKLLGPKKI 309
 
Name Accession Description Interval E-value
7TM_GPCR_Srt pfam10321
Serpentine type 7TM GPCR chemoreceptor Srt; Chemoreception is mediated in Caenorhabditis ...
 3-61 2.63e-19

Serpentine type 7TM GPCR chemoreceptor Srt; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 402096  Cd Length: 313  Bit Score: 79.18  E-value: 2.63e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 922580754    3 NFIAAMVYVYMQFFPVADFVIVIGHMSWQLGHGCPAIIYLFMNTTIRSGVSKIFRFKKP 61
Cdd:pfam10321 251 HAIAAIIYVYMQFFYPPPWLILIGQIAWQLSHGCPCIIYLTLNRTIRNGVLKLLGPKKI 309
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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