NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|79322634|ref|NP_001031385|]
View 

ATP binding microtubule motor family protein [Arabidopsis thaliana]

Protein Classification

kinesin family protein( domain architecture ID 10103641)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has an ATPase-containing motor domain; similar to N-type kinesins that are (+) end-directed motors and have an N-terminal motor domain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
24-346 1.06e-175

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 509.57  E-value: 1.06e-175
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  24 KILVLVRLRPLNEKEILANEAADWECINDTTVLYrntlregSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGIN 103
Cdd:cd01374   1 KITVTVRVRPLNSREIGINEQVAWEIDNDTIYLV-------EPPSTSFTFDHVFGGDSTNREVYELIAKPVVKSALEGYN 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 104 SSIFAYGQTSSGKTYTMS------GITEFAVADIFDYIFKHEDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDPEKG 177
Cdd:cd01374  74 GTIFAYGQTSSGKTFTMSgdedepGIIPLAIRDIFSKIQDTPDREFLLRVSYLEIYNEKINDLLSPTSQNLKIRDDVEKG 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 178 AAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLgkENSTTLMASVNFIDLAGSER 257
Cdd:cd01374 154 VYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEL--EEGTVRVSTLNLIDLAGSER 231
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 258 ASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGR-QGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQTRNT 336
Cdd:cd01374 232 AAQTGAAGVRRKEGSHINKSLLTLGTVISKLSEGKvGGHIPYRDSKLTRILQPSLGGNSRTAIICTITPAESHVEETLNT 311
                       330
                ....*....|
gi 79322634 337 LLFACCAKEV 346
Cdd:cd01374 312 LKFASRAKKI 321
DUF3490 pfam11995
Domain of unknown function (DUF3490); This presumed domain is functionally uncharacterized. ...
684-844 4.36e-100

Domain of unknown function (DUF3490); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with pfam00225. This domain is found associated with pfam00225. This domain has two conserved sequence motifs: EVE and ESA.


:

Pssm-ID: 463424  Cd Length: 161  Bit Score: 307.99  E-value: 4.36e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   684 EFERQREQILGLWQTCHVSLVHRTYFFLLFTGDQADSIYIGVELRRLSFMKESFSQGNHAFERGQTLTIASSLKALHRER 763
Cdd:pfam11995   1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSQGNQAVEDGQTLTLASSLKALRRER 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   764 RMLSKLVGKRFTGEERKRLYQKFGIAVNSKRRRLQLANQLWSKPNDITHAVESAAVVAKLVRFVEQGRAMKEMFGLSFTP 843
Cdd:pfam11995  81 EMLSKQMQKKLSEEERENLYLKWGIPLNSKQRRLQLAHRLWTDTKDMNHVRESASLVAKLVGFVEQGQASKEMFGLSFTP 160

                  .
gi 79322634   844 P 844
Cdd:pfam11995 161 P 161
 
Name Accession Description Interval E-value
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
24-346 1.06e-175

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 509.57  E-value: 1.06e-175
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  24 KILVLVRLRPLNEKEILANEAADWECINDTTVLYrntlregSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGIN 103
Cdd:cd01374   1 KITVTVRVRPLNSREIGINEQVAWEIDNDTIYLV-------EPPSTSFTFDHVFGGDSTNREVYELIAKPVVKSALEGYN 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 104 SSIFAYGQTSSGKTYTMS------GITEFAVADIFDYIFKHEDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDPEKG 177
Cdd:cd01374  74 GTIFAYGQTSSGKTFTMSgdedepGIIPLAIRDIFSKIQDTPDREFLLRVSYLEIYNEKINDLLSPTSQNLKIRDDVEKG 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 178 AAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLgkENSTTLMASVNFIDLAGSER 257
Cdd:cd01374 154 VYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEL--EEGTVRVSTLNLIDLAGSER 231
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 258 ASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGR-QGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQTRNT 336
Cdd:cd01374 232 AAQTGAAGVRRKEGSHINKSLLTLGTVISKLSEGKvGGHIPYRDSKLTRILQPSLGGNSRTAIICTITPAESHVEETLNT 311
                       330
                ....*....|
gi 79322634 337 LLFACCAKEV 346
Cdd:cd01374 312 LKFASRAKKI 321
Kinesin pfam00225
Kinesin motor domain;
30-346 5.07e-125

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 379.22  E-value: 5.07e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    30 RLRPLNEKEILANEAADWECINDTTVLYRNTLREGSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGINSSIFAY 109
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVTIFAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   110 GQTSSGKTYTMS------GITEFAVADIFDYIFKHEDR-AFVVKFSAIEIYNEAIRDLLSPDSTP---LRLRDDPEKGAA 179
Cdd:pfam00225  81 GQTGSGKTYTMEgsdeqpGIIPRALEDLFDRIQKTKERsEFSVKVSYLEIYNEKIRDLLSPSNKNkrkLRIREDPKKGVY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   180 VEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKENSTTlmASVNFIDLAGSERAS 259
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKT--GKLNLVDLAGSERAS 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   260 QALSA-GARLKEGCHINRSLLTLGTVIRKLSNGRQGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQTRNTLL 338
Cdd:pfam00225 239 KTGAAgGQRLKEAANINKSLSALGNVISALADKKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEETLSTLR 318

                  ....*...
gi 79322634   339 FACCAKEV 346
Cdd:pfam00225 319 FASRAKNI 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
25-353 1.15e-121

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 371.13  E-value: 1.15e-121
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634     25 ILVLVRLRPLNEKEILANEAADWECIND---TTVLYRNTLREGSTFpsaYSFDRVYRGECPTRQVYEDGPKEVALSVVKG 101
Cdd:smart00129   2 IRVVVRVRPLNKREKSRKSPSVVPFPDKvgkTLTVRSPKNRQGEKK---FTFDKVFDATASQEDVFEETAAPLVDSVLEG 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    102 INSSIFAYGQTSSGKTYTMS------GITEFAVADIFDYIFKH-EDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDP 174
Cdd:smart00129  79 YNATIFAYGQTGSGKTYTMIgtpdspGIIPRALKDLFEKIDKReEGWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIREDE 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    175 EKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREflgKENSTTLMASVNFIDLAG 254
Cdd:smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKN---SSSGSGKASKLNLVDLAG 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    255 SERASQALSAGARLKEGCHINRSLLTLGTVIRKLS-NGRQGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQT 333
Cdd:smart00129 236 SERAKKTGAEGDRLKEAGNINKSLSALGNVINALAqHSKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSSSNLEET 315
                          330       340
                   ....*....|....*....|
gi 79322634    334 RNTLLFACCAKEVTTKAQIN 353
Cdd:smart00129 316 LSTLRFASRAKEIKNKPIVN 335
DUF3490 pfam11995
Domain of unknown function (DUF3490); This presumed domain is functionally uncharacterized. ...
684-844 4.36e-100

Domain of unknown function (DUF3490); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with pfam00225. This domain is found associated with pfam00225. This domain has two conserved sequence motifs: EVE and ESA.


Pssm-ID: 463424  Cd Length: 161  Bit Score: 307.99  E-value: 4.36e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   684 EFERQREQILGLWQTCHVSLVHRTYFFLLFTGDQADSIYIGVELRRLSFMKESFSQGNHAFERGQTLTIASSLKALHRER 763
Cdd:pfam11995   1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSQGNQAVEDGQTLTLASSLKALRRER 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   764 RMLSKLVGKRFTGEERKRLYQKFGIAVNSKRRRLQLANQLWSKPNDITHAVESAAVVAKLVRFVEQGRAMKEMFGLSFTP 843
Cdd:pfam11995  81 EMLSKQMQKKLSEEERENLYLKWGIPLNSKQRRLQLAHRLWTDTKDMNHVRESASLVAKLVGFVEQGQASKEMFGLSFTP 160

                  .
gi 79322634   844 P 844
Cdd:pfam11995 161 P 161
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
21-357 7.98e-71

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 244.26  E-value: 7.98e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  21 REEKILVLVRLRPLNEKEILANEaadwecINDTTVLYRNTLregstfPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVK 100
Cdd:COG5059  20 SVSDIKSTIRIIPGELGERLINT------SKKSHVSLEKSK------EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLL 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 101 GINSSIFAYGQTSSGKTYTMSG------ITEFAVADIFDYIFKHEDRA-FVVKFSAIEIYNEAIRDLLSPDSTPLRLRDD 173
Cdd:COG5059  88 GYNCTVFAYGQTGSGKTYTMSGteeepgIIPLSLKELFSKLEDLSMTKdFAVSISYLEIYNEKIYDLLSPNEESLNIRED 167
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 174 PEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKENSTtlmasVNFIDLA 253
Cdd:COG5059 168 SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSK-----LSLVDLA 242
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 254 GSERASQALSAGARLKEGCHINRSLLTLGTVIRKLS-NGRQGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQ 332
Cdd:COG5059 243 GSERAARTGNRGTRLKEGASINKSLLTLGNVINALGdKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEE 322
                       330       340
                ....*....|....*....|....*
gi 79322634 333 TRNTLLFACCAKEVTTKAQINVVMS 357
Cdd:COG5059 323 TINTLKFASRAKSIKNKIQVNSSSD 347
PLN03188 PLN03188
kinesin-12 family protein; Provisional
27-379 3.81e-58

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 216.72  E-value: 3.81e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    27 VLVRLRPLNEKE----ILANEAADWECINDTTvlyrntlregstfpsaYSFDRVYRGECPTRQVYEDGPKEVALSVVKGI 102
Cdd:PLN03188  102 VIVRMKPLNKGEegemIVQKMSNDSLTINGQT----------------FTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   103 NSSIFAYGQTSSGKTYTM----------------SGITEFAVADIFDYI----FKHEDRA--FVVKFSAIEIYNEAIRDL 160
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMwgpanglleehlsgdqQGLTPRVFERLFARIneeqIKHADRQlkYQCRCSFLEIYNEQITDL 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   161 LSPDSTPLRLRDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKENS 240
Cdd:PLN03188  246 LDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSS 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   241 TTlMASVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLS----NGRQGHINYRDSKLTRILQPCLGGNAR 316
Cdd:PLN03188  326 FK-TSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAeisqTGKQRHIPYRDSRLTFLLQESLGGNAK 404
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 79322634   317 TAIVCTLSPARSHVEQTRNTLLFACCAKEVTTKAQINVVMSD-----KALVKQLQRELARLESELRNP 379
Cdd:PLN03188  405 LAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDdvnflREVIRQLRDELQRVKANGNNP 472
 
Name Accession Description Interval E-value
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
24-346 1.06e-175

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 509.57  E-value: 1.06e-175
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  24 KILVLVRLRPLNEKEILANEAADWECINDTTVLYrntlregSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGIN 103
Cdd:cd01374   1 KITVTVRVRPLNSREIGINEQVAWEIDNDTIYLV-------EPPSTSFTFDHVFGGDSTNREVYELIAKPVVKSALEGYN 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 104 SSIFAYGQTSSGKTYTMS------GITEFAVADIFDYIFKHEDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDPEKG 177
Cdd:cd01374  74 GTIFAYGQTSSGKTFTMSgdedepGIIPLAIRDIFSKIQDTPDREFLLRVSYLEIYNEKINDLLSPTSQNLKIRDDVEKG 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 178 AAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLgkENSTTLMASVNFIDLAGSER 257
Cdd:cd01374 154 VYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEL--EEGTVRVSTLNLIDLAGSER 231
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 258 ASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGR-QGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQTRNT 336
Cdd:cd01374 232 AAQTGAAGVRRKEGSHINKSLLTLGTVISKLSEGKvGGHIPYRDSKLTRILQPSLGGNSRTAIICTITPAESHVEETLNT 311
                       330
                ....*....|
gi 79322634 337 LLFACCAKEV 346
Cdd:cd01374 312 LKFASRAKKI 321
Kinesin pfam00225
Kinesin motor domain;
30-346 5.07e-125

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 379.22  E-value: 5.07e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    30 RLRPLNEKEILANEAADWECINDTTVLYRNTLREGSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGINSSIFAY 109
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVTIFAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   110 GQTSSGKTYTMS------GITEFAVADIFDYIFKHEDR-AFVVKFSAIEIYNEAIRDLLSPDSTP---LRLRDDPEKGAA 179
Cdd:pfam00225  81 GQTGSGKTYTMEgsdeqpGIIPRALEDLFDRIQKTKERsEFSVKVSYLEIYNEKIRDLLSPSNKNkrkLRIREDPKKGVY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   180 VEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKENSTTlmASVNFIDLAGSERAS 259
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKT--GKLNLVDLAGSERAS 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   260 QALSA-GARLKEGCHINRSLLTLGTVIRKLSNGRQGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQTRNTLL 338
Cdd:pfam00225 239 KTGAAgGQRLKEAANINKSLSALGNVISALADKKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEETLSTLR 318

                  ....*...
gi 79322634   339 FACCAKEV 346
Cdd:pfam00225 319 FASRAKNI 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
25-353 1.15e-121

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 371.13  E-value: 1.15e-121
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634     25 ILVLVRLRPLNEKEILANEAADWECIND---TTVLYRNTLREGSTFpsaYSFDRVYRGECPTRQVYEDGPKEVALSVVKG 101
Cdd:smart00129   2 IRVVVRVRPLNKREKSRKSPSVVPFPDKvgkTLTVRSPKNRQGEKK---FTFDKVFDATASQEDVFEETAAPLVDSVLEG 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    102 INSSIFAYGQTSSGKTYTMS------GITEFAVADIFDYIFKH-EDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDP 174
Cdd:smart00129  79 YNATIFAYGQTGSGKTYTMIgtpdspGIIPRALKDLFEKIDKReEGWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIREDE 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    175 EKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREflgKENSTTLMASVNFIDLAG 254
Cdd:smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKN---SSSGSGKASKLNLVDLAG 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    255 SERASQALSAGARLKEGCHINRSLLTLGTVIRKLS-NGRQGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQT 333
Cdd:smart00129 236 SERAKKTGAEGDRLKEAGNINKSLSALGNVINALAqHSKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSSSNLEET 315
                          330       340
                   ....*....|....*....|
gi 79322634    334 RNTLLFACCAKEVTTKAQIN 353
Cdd:smart00129 316 LSTLRFASRAKEIKNKPIVN 335
DUF3490 pfam11995
Domain of unknown function (DUF3490); This presumed domain is functionally uncharacterized. ...
684-844 4.36e-100

Domain of unknown function (DUF3490); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with pfam00225. This domain is found associated with pfam00225. This domain has two conserved sequence motifs: EVE and ESA.


Pssm-ID: 463424  Cd Length: 161  Bit Score: 307.99  E-value: 4.36e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   684 EFERQREQILGLWQTCHVSLVHRTYFFLLFTGDQADSIYIGVELRRLSFMKESFSQGNHAFERGQTLTIASSLKALHRER 763
Cdd:pfam11995   1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSQGNQAVEDGQTLTLASSLKALRRER 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   764 RMLSKLVGKRFTGEERKRLYQKFGIAVNSKRRRLQLANQLWSKPNDITHAVESAAVVAKLVRFVEQGRAMKEMFGLSFTP 843
Cdd:pfam11995  81 EMLSKQMQKKLSEEERENLYLKWGIPLNSKQRRLQLAHRLWTDTKDMNHVRESASLVAKLVGFVEQGQASKEMFGLSFTP 160

                  .
gi 79322634   844 P 844
Cdd:pfam11995 161 P 161
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
24-344 6.48e-98

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 308.80  E-value: 6.48e-98
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  24 KILVLVRLRPLNEKEilANEAAD-WECINDTTVLYRNTLREGSTfPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGI 102
Cdd:cd00106   1 NVRVAVRVRPLNGRE--ARSAKSvISVDGGKSVVLDPPKNRVAP-PKTFAFDAVFDSTSTQEEVYEGTAKPLVDSALEGY 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 103 NSSIFAYGQTSSGKTYTMS-------GITEFAVADIFDYI--FKHEDRAFVVKFSAIEIYNEAIRDLLSPD-STPLRLRD 172
Cdd:cd00106  78 NGTIFAYGQTGSGKTYTMLgpdpeqrGIIPRALEDIFERIdkRKETKSSFSVSASYLEIYNEKIYDLLSPVpKKPLSLRE 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 173 DPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREflgKENSTTLMASVNFIDL 252
Cdd:cd00106 158 DPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNRE---KSGESVTSSKLNLVDL 234
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 253 AGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQ 332
Cdd:cd00106 235 AGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALADGQNKHIPYRDSKLTRLLQDSLGGNSKTIMIACISPSSENFEE 314
                       330
                ....*....|..
gi 79322634 333 TRNTLLFACCAK 344
Cdd:cd00106 315 TLSTLRFASRAK 326
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
25-346 1.06e-85

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 277.30  E-value: 1.06e-85
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  25 ILVLVRLRPLNEKEILANEAADWECINDTTVLYRNTLREGSTFPSA---------------YSFDRVYRGECPTRQVYED 89
Cdd:cd01370   2 LTVAVRVRPFSEKEKNEGFRRIVKVMDNHMLVFDPKDEEDGFFHGGsnnrdrrkrrnkelkYVFDRVFDETSTQEEVYEE 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  90 GPKEVALSVVKGINSSIFAYGQTSSGKTYTMSG------ITEFAVADIFDYIFK-HEDRAFVVKFSAIEIYNEAIRDLLS 162
Cdd:cd01370  82 TTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGtpqepgLMVLTMKELFKRIESlKDEKEFEVSMSYLEIYNETIRDLLN 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 163 PDSTPLRLRDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVEssAREFLGKENSTT 242
Cdd:cd01370 162 PSSGPLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVR--QQDKTASINQQV 239
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 243 LMASVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQG--HINYRDSKLTRILQPCLGGNARTAIV 320
Cdd:cd01370 240 RQGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALADPGKKnkHIPYRDSKLTRLLKDSLGGNCRTVMI 319
                       330       340
                ....*....|....*....|....*.
gi 79322634 321 CTLSPARSHVEQTRNTLLFACCAKEV 346
Cdd:cd01370 320 ANISPSSSSYEETHNTLKYANRAKNI 345
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
22-346 2.15e-83

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 270.35  E-value: 2.15e-83
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  22 EEKILVLVRLRPLNEKEILANEAADWECINDTTVLYRntlreGSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKG 101
Cdd:cd01369   1 ECNIKVVCRFRPLNELEVLQGSKSIVKFDPEDTVVIA-----TSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLNG 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 102 INSSIFAYGQTSSGKTYTMSGITEFA---------VADIFDYIFKHEDRA-FVVKFSAIEIYNEAIRDLLSPDSTPLRLR 171
Cdd:cd01369  76 YNGTIFAYGQTSSGKTYTMEGKLGDPesmgiipriVQDIFETIYSMDENLeFHVKVSYFEIYMEKIRDLLDVSKTNLSVH 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 172 DDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREflgkeNSTTLMASVNFID 251
Cdd:cd01369 156 EDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENVE-----TEKKKSGKLYLVD 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 252 LAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVE 331
Cdd:cd01369 231 LAGSEKVSKTGAEGAVLDEAKKINKSLSALGNVINALTDGKKTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNES 310
                       330
                ....*....|....*
gi 79322634 332 QTRNTLLFACCAKEV 346
Cdd:cd01369 311 ETLSTLRFGQRAKTI 325
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
23-346 3.56e-83

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 270.10  E-value: 3.56e-83
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  23 EKILVLVRLRPLNEKEILAN--EAADWECINDTtVLYRNTLREGSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVK 100
Cdd:cd01371   1 ENVKVVVRCRPLNGKEKAAGalQIVDVDEKRGQ-VSVRNPKATANEPPKTFTFDAVFDPNSKQLDVYDETARPLVDSVLE 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 101 GINSSIFAYGQTSSGKTYTMSGITEF-----AVADIFDYIFKH-----EDRAFVVKFSAIEIYNEAIRDLLSPDSTP-LR 169
Cdd:cd01371  80 GYNGTIFAYGQTGTGKTYTMEGKREDpelrgIIPNSFAHIFGHiarsqNNQQFLVRVSYLEIYNEEIRDLLGKDQTKrLE 159
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 170 LRDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKENSTtlMASVNF 249
Cdd:cd01371 160 LKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEKGEDGENHIR--VGKLNL 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 250 IDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSH 329
Cdd:cd01371 238 VDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYN 317
                       330
                ....*....|....*..
gi 79322634 330 VEQTRNTLLFACCAKEV 346
Cdd:cd01371 318 YDETLSTLRYANRAKNI 334
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
27-340 8.62e-78

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 255.72  E-value: 8.62e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  27 VLVRLRPLNEKEILANeaaDWECINDTTVLYRNTLreGSTfpSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGINSSI 106
Cdd:cd01372   5 VAVRVRPLLPKEIIEG---CRICVSFVPGEPQVTV--GTD--KSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGYNATV 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 107 FAYGQTSSGKTYTMS------------GITEFAVADIFDYIFKHEDRA-FVVKFSAIEIYNEAIRDLLSP---DSTPLRL 170
Cdd:cd01372  78 LAYGQTGSGKTYTMGtaytaeedeeqvGIIPRAIQHIFKKIEKKKDTFeFQLKVSFLEIYNEEIRDLLDPetdKKPTISI 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 171 RDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVE-----SSAREFLGKENSTTLMA 245
Cdd:cd01372 158 REDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEqtkknGPIAPMSADDKNSTFTS 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 246 SVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQ--GHINYRDSKLTRILQPCLGGNARTAIVCTL 323
Cdd:cd01372 238 KFHFVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALGDESKkgAHVPYRDSKLTRLLQDSLGGNSHTLMIACV 317
                       330
                ....*....|....*..
gi 79322634 324 SPARSHVEQTRNTLLFA 340
Cdd:cd01372 318 SPADSNFEETLNTLKYA 334
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
24-340 1.23e-76

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 252.13  E-value: 1.23e-76
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  24 KILVLVRLRPLNEKEIlANEAADWECINDTTvlYRNTLREGSTFPSAYSFDRVYRGECPTRQVYEDGPKEVaLSVVKGIN 103
Cdd:cd01366   3 NIRVFCRVRPLLPSEE-NEDTSHITFPDEDG--QTIELTSIGAKQKEFSFDKVFDPEASQEDVFEEVSPLV-QSALDGYN 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 104 SSIFAYGQTSSGKTYTMSGITEF------AVADIFDYIFKHEDRAFVVKFSA--IEIYNEAIRDLLSPDSTP---LRLRD 172
Cdd:cd01366  79 VCIFAYGQTGSGKTYTMEGPPESpgiiprALQELFNTIKELKEKGWSYTIKAsmLEIYNETIRDLLAPGNAPqkkLEIRH 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 173 DPEKGAA-VEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESsareflgkENSTTLMASV---N 248
Cdd:cd01366 159 DSEKGDTtVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISG--------RNLQTGEISVgklN 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 249 FIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQgHINYRDSKLTRILQPCLGGNARTAIVCTLSPARS 328
Cdd:cd01366 231 LVDLAGSERLNKSGATGDRLKETQAINKSLSALGDVISALRQKQS-HIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAES 309
                       330
                ....*....|..
gi 79322634 329 HVEQTRNTLLFA 340
Cdd:cd01366 310 NLNETLNSLRFA 321
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
23-353 5.46e-75

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 249.19  E-value: 5.46e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  23 EKILVLVRLRPLNEKEILANEaadwECI-----NDTTVLYRNTLREGSTF----PSAYSFDRVY---RGECPT----RQV 86
Cdd:cd01365   1 ANVKVAVRVRPFNSREKERNS----KCIvqmsgKETTLKNPKQADKNNKAtrevPKSFSFDYSYwshDSEDPNyasqEQV 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  87 YEDGPKEVALSVVKGINSSIFAYGQTSSGKTYTM------SGITEFAVADIFDYI--FKHEDRAFVVKFSAIEIYNEAIR 158
Cdd:cd01365  77 YEDLGEELLQHAFEGYNVCLFAYGQTGSGKSYTMmgtqeqPGIIPRLCEDLFSRIadTTNQNMSYSVEVSYMEIYNEKVR 156
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 159 DLLSPDSTP----LRLRDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREF 234
Cdd:cd01365 157 DLLNPKPKKnkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDA 236
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 235 lgKENSTTLMAS-VNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLS-------NGRQGHINYRDSKLTRI 306
Cdd:cd01365 237 --ETNLTTEKVSkISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALAdmssgksKKKSSFIPYRDSVLTWL 314
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*..
gi 79322634 307 LQPCLGGNARTAIVCTLSPARSHVEQTRNTLLFACCAKEVTTKAQIN 353
Cdd:cd01365 315 LKENLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKIVNRAVVN 361
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
22-353 5.85e-72

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 240.69  E-value: 5.85e-72
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  22 EEKILVLVRLRPLNEKEILANEAADWECINDT-TVLYRNTLREGSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVK 100
Cdd:cd01364   1 GKNIQVVVRCRPFNLRERKASSHSVVEVDPVRkEVSVRTGGLADKSSTKTYTFDMVFGPEAKQIDVYRSVVCPILDEVLM 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 101 GINSSIFAYGQTSSGKTYTMSG-----------------ITEFAVADIFDYIfKHEDRAFVVKFSAIEIYNEAIRDLLSP 163
Cdd:cd01364  81 GYNCTIFAYGQTGTGKTYTMEGdrspneeytweldplagIIPRTLHQLFEKL-EDNGTEYSVKVSYLEIYNEELFDLLSP 159
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 164 DST---PLRLRDDPE--KGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTV---ESSAR--E 233
Cdd:cd01364 160 SSDvseRLRMFDDPRnkRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIhikETTIDgeE 239
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 234 FL--GKensttlmasVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNgRQGHINYRDSKLTRILQPCL 311
Cdd:cd01364 240 LVkiGK---------LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RAPHVPYRESKLTRLLQDSL 309
                       330       340       350       360
                ....*....|....*....|....*....|....*....|..
gi 79322634 312 GGNARTAIVCTLSPARSHVEQTRNTLLFACCAKEVTTKAQIN 353
Cdd:cd01364 310 GGRTKTSIIATISPASVNLEETLSTLEYAHRAKNIKNKPEVN 351
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
21-357 7.98e-71

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 244.26  E-value: 7.98e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  21 REEKILVLVRLRPLNEKEILANEaadwecINDTTVLYRNTLregstfPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVK 100
Cdd:COG5059  20 SVSDIKSTIRIIPGELGERLINT------SKKSHVSLEKSK------EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLL 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 101 GINSSIFAYGQTSSGKTYTMSG------ITEFAVADIFDYIFKHEDRA-FVVKFSAIEIYNEAIRDLLSPDSTPLRLRDD 173
Cdd:COG5059  88 GYNCTVFAYGQTGSGKTYTMSGteeepgIIPLSLKELFSKLEDLSMTKdFAVSISYLEIYNEKIYDLLSPNEESLNIRED 167
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 174 PEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKENSTtlmasVNFIDLA 253
Cdd:COG5059 168 SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSK-----LSLVDLA 242
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 254 GSERASQALSAGARLKEGCHINRSLLTLGTVIRKLS-NGRQGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQ 332
Cdd:COG5059 243 GSERAARTGNRGTRLKEGASINKSLLTLGNVINALGdKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEE 322
                       330       340
                ....*....|....*....|....*
gi 79322634 333 TRNTLLFACCAKEVTTKAQINVVMS 357
Cdd:COG5059 323 TINTLKFASRAKSIKNKIQVNSSSD 347
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
25-354 2.30e-70

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 236.25  E-value: 2.30e-70
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  25 ILVLVRLRPLNEKEilANEAADWeCIndtTVLYRNTLREGSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGINS 104
Cdd:cd01373   3 VKVFVRIRPPAERE--GDGEYGQ-CL---KKLSSDTLVLHSKPPKTFTFDHVADSNTNQESVFQSVGKPIVESCLSGYNG 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 105 SIFAYGQTSSGKTYTMSG----ITEFA------VADIFDYIF--------KHEDR-AFVVKFSAIEIYNEAIRDLLSPDS 165
Cdd:cd01373  77 TIFAYGQTGSGKTYTMWGpsesDNESPhglrgvIPRIFEYLFsliqrekeKAGEGkSFLCKCSFLEIYNEQIYDLLDPAS 156
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 166 TPLRLRDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESsarefLGKENS--TTL 243
Cdd:cd01373 157 RNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIES-----WEKKACfvNIR 231
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 244 MASVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKL---SNGRQGHINYRDSKLTRILQPCLGGNARTAIV 320
Cdd:cd01373 232 TSRLNLVDLAGSERQKDTHAEGVRLKEAGNINKSLSCLGHVINALvdvAHGKQRHVCYRDSKLTFLLRDSLGGNAKTAII 311
                       330       340       350
                ....*....|....*....|....*....|....
gi 79322634 321 CTLSPARSHVEQTRNTLLFACCAKEVTTKAQINV 354
Cdd:cd01373 312 ANVHPSSKCFGETLSTLRFAQRAKLIKNKAVVNE 345
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
24-341 1.83e-65

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 222.17  E-value: 1.83e-65
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  24 KILVLVRLRPLNEKEILANE--AADWECINDTTVLYRNTLREGSTFPSAYSF--DRVYRGECPTRQVYEDGPKEVALSVV 99
Cdd:cd01367   1 KIKVCVRKRPLNKKEVAKKEidVVSVPSKLTLIVHEPKLKVDLTKYIENHTFrfDYVFDESSSNETVYRSTVKPLVPHIF 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 100 KGINSSIFAYGQTSSGKTYTMS----------GITEFAVADIFDYIFKHE-DRAFVVKFSAIEIYNEAIRDLLSpDSTPL 168
Cdd:cd01367  81 EGGKATCFAYGQTGSGKTYTMGgdfsgqeeskGIYALAARDVFRLLNKLPyKDNLGVTVSFFEIYGGKVFDLLN-RKKRV 159
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 169 RLRDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAreflgkenSTTLMASVN 248
Cdd:cd01367 160 RLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRG--------TNKLHGKLS 231
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 249 FIDLAGSERASQALSAGA-RLKEGCHINRSLLTLGTVIRKLSNGrQGHINYRDSKLTRILQPCL-GGNARTAIVCTLSPA 326
Cdd:cd01367 232 FVDLAGSERGADTSSADRqTRMEGAEINKSLLALKECIRALGQN-KAHIPFRGSKLTQVLKDSFiGENSKTCMIATISPG 310
                       330
                ....*....|....*
gi 79322634 327 RSHVEQTRNTLLFAC 341
Cdd:cd01367 311 ASSCEHTLNTLRYAD 325
PLN03188 PLN03188
kinesin-12 family protein; Provisional
27-379 3.81e-58

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 216.72  E-value: 3.81e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    27 VLVRLRPLNEKE----ILANEAADWECINDTTvlyrntlregstfpsaYSFDRVYRGECPTRQVYEDGPKEVALSVVKGI 102
Cdd:PLN03188  102 VIVRMKPLNKGEegemIVQKMSNDSLTINGQT----------------FTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   103 NSSIFAYGQTSSGKTYTM----------------SGITEFAVADIFDYI----FKHEDRA--FVVKFSAIEIYNEAIRDL 160
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMwgpanglleehlsgdqQGLTPRVFERLFARIneeqIKHADRQlkYQCRCSFLEIYNEQITDL 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   161 LSPDSTPLRLRDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKENS 240
Cdd:PLN03188  246 LDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSS 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634   241 TTlMASVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLS----NGRQGHINYRDSKLTRILQPCLGGNAR 316
Cdd:PLN03188  326 FK-TSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAeisqTGKQRHIPYRDSRLTFLLQESLGGNAK 404
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 79322634   317 TAIVCTLSPARSHVEQTRNTLLFACCAKEVTTKAQINVVMSD-----KALVKQLQRELARLESELRNP 379
Cdd:PLN03188  405 LAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDdvnflREVIRQLRDELQRVKANGNNP 472
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
25-340 2.16e-57

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 199.65  E-value: 2.16e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  25 ILVLVRLRPLNEKEILANEAADWECINDTTVLYRNTLREGStfPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGINS 104
Cdd:cd01376   2 VRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADPRNHGE--TLKYQFDAFYGEESTQEDIYAREVQPIVPHLLEGQNA 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 105 SIFAYGQTSSGKTYTMSGITE------FAVADIFDyIFKHEDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDPEKGA 178
Cdd:cd01376  80 TVFAYGSTGAGKTFTMLGSPEqpglmpLTVMDLLQ-MTRKEAWALSFTMSYLEIYQEKILDLLEPASKELVIREDKDGNI 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 179 AVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFlgkeNSTTLMASVNFIDLAGSERA 258
Cdd:cd01376 159 LIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLA----PFRQRTGKLNLIDLAGSEDN 234
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 259 SQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQgHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQTRNTLL 338
Cdd:cd01376 235 RRTGNEGIRLKESGAINSSLFVLSKVVNALNKNLP-RIPYRDSKLTRLLQDSLGGGSRCIMVANIAPERTFYQDTLSTLN 313

                ..
gi 79322634 339 FA 340
Cdd:cd01376 314 FA 315
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
23-344 6.59e-53

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 187.99  E-value: 6.59e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  23 EKILVLVRLRPLNEKEILANEAADWECINDTTV--------LYRNTLREGSTFPSAYSFDRVYRGECPTRQVYEDGPKEV 94
Cdd:cd01368   1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTVvlhppkgsAANKSERNGGQKETKFSFSKVFGPNTTQKEFFQGTALPL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  95 ALSVVKGINSSIFAYGQTSSGKTYTMSG------ITEFAVADIFDYIfkhedRAFVVKFSAIEIYNEAIRDLLSPDS--- 165
Cdd:cd01368  81 VQDLLHGKNGLLFTYGVTNSGKTYTMQGspgdggILPRSLDVIFNSI-----GGYSVFVSYIEIYNEYIYDLLEPSPssp 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 166 ----TPLRLRDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQI--IKL-TVESSAREFLGKE 238
Cdd:cd01368 156 tkkrQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVftIKLvQAPGDSDGDVDQD 235
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 239 NSTTLMASVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSN----GRQGHINYRDSKLTRILQPCLGGN 314
Cdd:cd01368 236 KDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGTCIEVLREnqlqGTNKMVPFRDSKLTHLFQNYFDGE 315
                       330       340       350
                ....*....|....*....|....*....|
gi 79322634 315 ARTAIVCTLSPARSHVEQTRNTLLFACCAK 344
Cdd:cd01368 316 GKASMIVNVNPCASDYDETLHVMKFSAIAQ 345
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
24-340 1.13e-51

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 184.32  E-value: 1.13e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  24 KILVLVRLRPLNEK--EILA----NEAADWECINDTTVLYRNTLREGSTFpsaySFDRVYRgECPTRQVYEDGPKEVALS 97
Cdd:cd01375   1 KVQAFVRVRPTDDFahEMIKygedGKSISIHLKKDLRRGVVNNQQEDWSF----KFDGVLH-NASQELVYETVAKDVVSS 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  98 VVKGINSSIFAYGQTSSGKTYTMSGITEF---------AVADIFDYIFKHEDRAFVVKFSAIEIYNEAIRDLLS------ 162
Cdd:cd01375  76 ALAGYNGTIFAYGQTGAGKTFTMTGGTENykhrgiiprALQQVFRMIEERPTKAYTVHVSYLEIYNEQLYDLLStlpyvg 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 163 PDSTPLRLRDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREfLGKEnsTT 242
Cdd:cd01375 156 PSVTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRT-LSSE--KY 232
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 243 LMASVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQGHINYRDSKLTRILQPCLGGNARTAIVCT 322
Cdd:cd01375 233 ITSKLNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQAIIALSDKDRTHVPFRQSKLTHVLRDSLGGNCNTVMVAN 312
                       330
                ....*....|....*...
gi 79322634 323 LSPARSHVEQTRNTLLFA 340
Cdd:cd01375 313 IYGEAAQLEETLSTLRFA 330
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
27-286 8.12e-16

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 75.84  E-value: 8.12e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634  27 VLVRLRPLNEKEILANEaadwECINdttvlyrntlregstfpsaysFDRV-YRGECPTrQVYEDGPKEVALSVVKGINSS 105
Cdd:cd01363   1 VLVRVNPFKELPIYRDS----KIIV---------------------FYRGfRRSESQP-HVFAIADPAYQSMLDGYNNQS 54
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 106 IFAYGQTSSGKTYTMSGITEFAVADIFDYIFKHEDrafvvkfsaieiyneairdllspdstplrlrddpekgAAVEKATE 185
Cdd:cd01363  55 IFAYGESGAGKTETMKGVIPYLASVAFNGINKGET-------------------------------------EGWVYLTE 97
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634 186 ETLRDWNHLKELISVCEAQRkIGETSLNERSSRSHQIIKLTVessareflgkensttlmasvnfiDLAGSERasqalsag 265
Cdd:cd01363  98 ITVTLEDQILQANPILEAFG-NAKTTRNENSSRFGKFIEILL-----------------------DIAGFEI-------- 145
                       250       260
                ....*....|....*....|.
gi 79322634 266 arlkegchINRSLLTLGTVIR 286
Cdd:cd01363 146 --------INESLNTLMNVLR 158
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
24-161 7.43e-12

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 63.78  E-value: 7.43e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79322634    24 KILVLVRLRPLNEKEILANEAAdwECINDTTVLYRNtlregstfpSAYSFDRVYRGECPTRQVYEDgPKEVALSVVKGIN 103
Cdd:pfam16796  21 NIRVFARVRPELLSEAQIDYPD--ETSSDGKIGSKN---------KSFSFDRVFPPESEQEDVFQE-ISQLVQSCLDGYN 88
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 79322634   104 SSIFAYGQTSSGKTYTMsgITEfAVADIFDYIFKHE-DRAFVVKFSAIEIYNEAIRDLL 161
Cdd:pfam16796  89 VCIFAYGQTGSGSNDGM--IPR-AREQIFRFISSLKkGWKYTIELQFVEIYNESSQDLL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH