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Conserved domains on  [gi|79330812|ref|NP_001032072|]
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protochlorophyllide oxidoreductase A [Arabidopsis thaliana]

Protein Classification

protochlorophyllide reductase( domain architecture ID 10010574)

protochlorophyllide reductase catalyzes phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN00015 PLN00015
protochlorophyllide reductase
1-282 0e+00

protochlorophyllide reductase


:

Pssm-ID: 177654  Cd Length: 308  Bit Score: 655.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    1 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGI 80
Cdd:PLN00015  27 MACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGT 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   81 NHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYK 160
Cdd:PLN00015 107 NHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYK 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  161 DSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSL 240
Cdd:PLN00015 187 DSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSL 266
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 79330812  241 TKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVG 282
Cdd:PLN00015 267 TKSGVYWSWNGGSASFENQLSQEASDAEKAKKVWEISEKLVG 308
 
Name Accession Description Interval E-value
PLN00015 PLN00015
protochlorophyllide reductase
1-282 0e+00

protochlorophyllide reductase


Pssm-ID: 177654  Cd Length: 308  Bit Score: 655.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    1 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGI 80
Cdd:PLN00015  27 MACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGT 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   81 NHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYK 160
Cdd:PLN00015 107 NHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYK 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  161 DSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSL 240
Cdd:PLN00015 187 DSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSL 266
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 79330812  241 TKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVG 282
Cdd:PLN00015 267 TKSGVYWSWNGGSASFENQLSQEASDAEKAKKVWEISEKLVG 308
LPOR_like_SDR_c_like cd09810
light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs; Classical ...
1-283 0e+00

light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs; Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187670 [Multi-domain]  Cd Length: 311  Bit Score: 537.49  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   1 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGI 80
Cdd:cd09810  31 MACRDFLKAEQAAQEVGMPKDSYSVLHCDLASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGV 110
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  81 NHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSsaMIDGGDFVGAKAYK 160
Cdd:cd09810 111 NHLGHFLLTNLLLEDLQRSENASPRIVIVGSITHNPNTLAGNVPPRATLGDLEGLAGGLKGFNS--MIDGGEFEGAKAYK 188
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812 161 DSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSL 240
Cdd:cd09810 189 DSKVCNMLTTYELHRRLHEETGITFNSLYPGCIAETGLFREHYPLFRTLFPPFQKYITKGYVSEEEAGERLAAVIADPSL 268
                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
gi 79330812 241 TKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGL 283
Cdd:cd09810 269 GVSGVYWSWGKASGSFENQSSQESSDDEKARKLWEISEKLVGL 311
LPOR TIGR01289
light-dependent protochlorophyllide reductase; This model represents the light-dependent, ...
1-284 0e+00

light-dependent protochlorophyllide reductase; This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 200089  Cd Length: 314  Bit Score: 520.19  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812     1 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGI 80
Cdd:TIGR01289  33 MACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGT 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    81 NHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNssAMIDGGDFVGAKAYK 160
Cdd:TIGR01289 113 NHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANLGDLSGLAAGFKAPI--AMIDGKEFKGAKAYK 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   161 DSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSL 240
Cdd:TIGR01289 191 DSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRTLFPPFQKYITKGYVSEEEAGERLAQVVSDPKL 270
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 79330812   241 TKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 284
Cdd:TIGR01289 271 KKSGVYWSWGNRQESFVNQLSEEVSDDSKASKMWDLSEKLVGLA 314
LPOR COG5748
Light-dependent NADPH-protochlorophyllide oxidoreductase [Coenzyme transport and metabolism];
1-284 9.11e-162

Light-dependent NADPH-protochlorophyllide oxidoreductase [Coenzyme transport and metabolism];


Pssm-ID: 444458 [Multi-domain]  Cd Length: 324  Bit Score: 452.14  E-value: 9.11e-162
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   1 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGI 80
Cdd:COG5748  35 MACRDLEKAEAAAQELGIPPDSYTIIHIDLASLESVRRFVADFRALGRPLDALVCNAAVYYPLLKEPLRSPDGYELSVAT 114
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  81 NHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLAG--NVPPKANLGDLRGLAGGLNGlnSSAMIDGGDFVGAKA 158
Cdd:COG5748 115 NHLGHFLLCNLLLEDLKKSPASDPRLVILGTVTANPKELGGkiPIPAPPDLGDLEGFEAGFKA--PISMIDGKKFKPGKA 192
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812 159 YKDSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADP 238
Cdd:COG5748 193 YKDSKLCNVLTMRELHRRYHESTGIVFSSLYPGCVADTPLFRNHYPLFQKLFPLFQKNITGGYVSQELAGERVAQVVADP 272
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|
gi 79330812 239 SLTKSGVYWSWN----KTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 284
Cdd:COG5748 273 EYAQSGVYWSWGnrqkKGRKSFVQEVSPEASDDDKAKRLWELSAKLVGLA 322
adh_short pfam00106
short chain dehydrogenase; This family contains a wide variety of dehydrogenases.
8-195 2.22e-07

short chain dehydrogenase; This family contains a wide variety of dehydrogenases.


Pssm-ID: 395056 [Multi-domain]  Cd Length: 195  Bit Score: 49.92  E-value: 2.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812     8 KAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDnFRRAEM-PLDVLVCNAAVyQPTANQPTFTAEGFELSVGINHLGHF 86
Cdd:pfam00106  36 KLEAVAKELGALGGKALFIQGDVTDRAQVKALVE-QAVERLgRLDILVNNAGI-TGLGPFSELSDEDWERVIDVNLTGVF 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    87 LLSRLLIDDLKNSdyPSKRLIIVGSItgntntlAGNVPpkanlgdlrglagglnglnssamidggdFVGAKAYKDSK--V 164
Cdd:pfam00106 114 NLTRAVLPAMIKG--SGGRIVNISSV-------AGLVP----------------------------YPGGSAYSASKaaV 156
                         170       180       190
                  ....*....|....*....|....*....|....
gi 79330812   165 cNMLTM---QEFHRrfhedTGITFASLYPGCIAT 195
Cdd:pfam00106 157 -IGFTRslaLELAP-----HGIRVNAVAPGGVDT 184
 
Name Accession Description Interval E-value
PLN00015 PLN00015
protochlorophyllide reductase
1-282 0e+00

protochlorophyllide reductase


Pssm-ID: 177654  Cd Length: 308  Bit Score: 655.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    1 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGI 80
Cdd:PLN00015  27 MACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGT 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   81 NHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYK 160
Cdd:PLN00015 107 NHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYK 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  161 DSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSL 240
Cdd:PLN00015 187 DSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSL 266
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 79330812  241 TKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVG 282
Cdd:PLN00015 267 TKSGVYWSWNGGSASFENQLSQEASDAEKAKKVWEISEKLVG 308
LPOR_like_SDR_c_like cd09810
light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs; Classical ...
1-283 0e+00

light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs; Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187670 [Multi-domain]  Cd Length: 311  Bit Score: 537.49  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   1 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGI 80
Cdd:cd09810  31 MACRDFLKAEQAAQEVGMPKDSYSVLHCDLASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGV 110
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  81 NHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSsaMIDGGDFVGAKAYK 160
Cdd:cd09810 111 NHLGHFLLTNLLLEDLQRSENASPRIVIVGSITHNPNTLAGNVPPRATLGDLEGLAGGLKGFNS--MIDGGEFEGAKAYK 188
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812 161 DSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSL 240
Cdd:cd09810 189 DSKVCNMLTTYELHRRLHEETGITFNSLYPGCIAETGLFREHYPLFRTLFPPFQKYITKGYVSEEEAGERLAAVIADPSL 268
                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
gi 79330812 241 TKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGL 283
Cdd:cd09810 269 GVSGVYWSWGKASGSFENQSSQESSDDEKARKLWEISEKLVGL 311
LPOR TIGR01289
light-dependent protochlorophyllide reductase; This model represents the light-dependent, ...
1-284 0e+00

light-dependent protochlorophyllide reductase; This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 200089  Cd Length: 314  Bit Score: 520.19  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812     1 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGI 80
Cdd:TIGR01289  33 MACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGT 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    81 NHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNssAMIDGGDFVGAKAYK 160
Cdd:TIGR01289 113 NHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANLGDLSGLAAGFKAPI--AMIDGKEFKGAKAYK 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   161 DSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSL 240
Cdd:TIGR01289 191 DSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRTLFPPFQKYITKGYVSEEEAGERLAQVVSDPKL 270
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 79330812   241 TKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 284
Cdd:TIGR01289 271 KKSGVYWSWGNRQESFVNQLSEEVSDDSKASKMWDLSEKLVGLA 314
LPOR COG5748
Light-dependent NADPH-protochlorophyllide oxidoreductase [Coenzyme transport and metabolism];
1-284 9.11e-162

Light-dependent NADPH-protochlorophyllide oxidoreductase [Coenzyme transport and metabolism];


Pssm-ID: 444458 [Multi-domain]  Cd Length: 324  Bit Score: 452.14  E-value: 9.11e-162
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   1 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGI 80
Cdd:COG5748  35 MACRDLEKAEAAAQELGIPPDSYTIIHIDLASLESVRRFVADFRALGRPLDALVCNAAVYYPLLKEPLRSPDGYELSVAT 114
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  81 NHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLAG--NVPPKANLGDLRGLAGGLNGlnSSAMIDGGDFVGAKA 158
Cdd:COG5748 115 NHLGHFLLCNLLLEDLKKSPASDPRLVILGTVTANPKELGGkiPIPAPPDLGDLEGFEAGFKA--PISMIDGKKFKPGKA 192
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812 159 YKDSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADP 238
Cdd:COG5748 193 YKDSKLCNVLTMRELHRRYHESTGIVFSSLYPGCVADTPLFRNHYPLFQKLFPLFQKNITGGYVSQELAGERVAQVVADP 272
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|
gi 79330812 239 SLTKSGVYWSWN----KTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 284
Cdd:COG5748 273 EYAQSGVYWSWGnrqkKGRKSFVQEVSPEASDDDKAKRLWELSAKLVGLA 322
retinol-DH_like_SDR_c_like cd05327
retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) ...
1-274 5.69e-68

retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs; Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212492 [Multi-domain]  Cd Length: 269  Bit Score: 212.08  E-value: 5.69e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   1 MACRDFLKAERAAQS--AGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQptfTAEGFELSV 78
Cdd:cd05327  30 IACRNEEKGEEAAAEikKETGNAKVEVIQLDLSSLASVRQFAEEFLARFPRLDILINNAGIMAPPRRL---TKDGFELQF 106
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  79 GINHLGHFLLSRLLIDDLKNSdyPSKRLIIVGSITGNTNTLAGNVPPKANlgdlrglagglnglnssamidGGDFVGAKA 158
Cdd:cd05327 107 AVNYLGHFLLTNLLLPVLKAS--APSRIVNVSSIAHRAGPIDFNDLDLEN---------------------NKEYSPYKA 163
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812 159 YKDSKVCNMLTMQEFHRRfHEDTGITFASLYPGCIATTGLFREHI-PLFRTLFPPFQKyitkgyVSESEAGKRLAQVVAD 237
Cdd:cd05327 164 YGQSKLANILFTRELARR-LEGTGVTVNALHPGVVRTELLRRNGSfFLLYKLLRPFLK------KSPEQGAQTALYAATS 236
                       250       260       270
                ....*....|....*....|....*....|....*...
gi 79330812 238 PSLT-KSGVYWSWNKTSASfenqlSQEASDVEKARRVW 274
Cdd:cd05327 237 PELEgVSGKYFSDCKIKMS-----SSEALDEELAEKLW 269
retinol-DH_like_SDR_c cd09807
retinol dehydrogenases (retinol-DHs), classical (c) SDRs; Classical SDR-like subgroup ...
1-277 5.83e-41

retinol dehydrogenases (retinol-DHs), classical (c) SDRs; Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212495 [Multi-domain]  Cd Length: 274  Bit Score: 142.61  E-value: 5.83e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   1 MACRDFLKAERAA-QSAGMPKDSYT-VMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQ-PTANqptfTAEGFELS 77
Cdd:cd09807  30 MACRDMAKCEEAAaEIRRDTLNHEViVRHLDLASLKSIRAFAAEFLAEEDRLDVLINNAGVMRcPYSK----TEDGFEMQ 105
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  78 VGINHLGHFLLSRLLIDDLKNSDyPSkRLIIVGSITgntnTLAGNVPpkanlgdlrglaggLNGLNSSAMIDGGdfvgaK 157
Cdd:cd09807 106 FGVNHLGHFLLTNLLLDLLKKSA-PS-RIVNVSSLA----HKAGKIN--------------FDDLNSEKSYNTG-----F 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812 158 AYKDSKVCNMLTMQEFHRRFhEDTGITFASLYPGcIATTGLFReHI--------PLFRTLFPPFQKyitkgyvSESEAGK 229
Cdd:cd09807 161 AYCQSKLANVLFTRELARRL-QGTGVTVNALHPG-VVRTELGR-HTgihhlflsTLLNPLFWPFVK-------TPREGAQ 230
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*....
gi 79330812 230 RLAQVVADPSLTK-SGVYWSWNKtsasfENQLSQEASDVEKARRVWEVS 277
Cdd:cd09807 231 TSIYLALAEELEGvSGKYFSDCK-----LKEPAPEAMDEETARRLWEIS 274
human_WWOX_like_SDR_c-like cd09809
human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs; Classical-like ...
1-281 3.93e-32

human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs; Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187669 [Multi-domain]  Cd Length: 284  Bit Score: 120.01  E-value: 3.93e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   1 MACRDFLKAERAAQSAGMP--KDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYqptANQPTFTAEGFELSV 78
Cdd:cd09809  30 LACRNMSRASAAVSRILEEwhKARVEAMTLDLASLRSVQRFAEAFKAKNSPLHVLVCNAAVF---ALPWTLTEDGLETTF 106
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  79 GINHLGHFLLSRLLIDDLknsDYPSKRLIIVGSITGNTNTlagNVPPKANLGDLRGLAGGLNglNSSAMIdggdfvgakA 158
Cdd:cd09809 107 QVNHLGHFYLVQLLEDVL---RRSAPARVIVVSSESHRFT---DLPDSCGNLDFSLLSPPKK--KYWSML---------A 169
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812 159 YKDSKVCNMLTMQEFHRRFHEdTGITFASLYPGCIATTGLFREH--IPLFRTLFPPFQKYITKGyvseseAGKRLAQVVA 236
Cdd:cd09809 170 YNRAKLCNILFSNELHRRLSP-RGITSNSLHPGNMMYSSIHRNWwvYTLLFTLARPFTKSMQQG------AATTVYCATA 242
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*.
gi 79330812 237 dPSLTK-SGVYWswnktSASFENQLSQEASDVEKARRVWEVSEKLV 281
Cdd:cd09809 243 -PELEGlGGMYF-----NNCFRCLPSPEAQSEATAQQLWELSERLI 282
PRK06197 PRK06197
short chain dehydrogenase; Provisional
1-282 3.66e-31

short chain dehydrogenase; Provisional


Pssm-ID: 235737 [Multi-domain]  Cd Length: 306  Bit Score: 117.82  E-value: 3.66e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    1 MACRDFLKAERAAQ--SAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAV-YQPTANqptfTAEGFELS 77
Cdd:PRK06197  45 LAVRNLDKGKAAAAriTAATPGADVTLQELDLTSLASVRAAADALRAAYPRIDLLINNAGVmYTPKQT----TADGFELQ 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   78 VGINHLGHFLLSRLLIDDLKnsDYPSKRLIIVGSitgntntlagnvppkanlgdlrglagglNGLNSSAMIDGGD----- 152
Cdd:PRK06197 121 FGTNHLGHFALTGLLLDRLL--PVPGSRVVTVSS----------------------------GGHRIRAAIHFDDlqwer 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  153 -FVGAKAYKDSKVCNMLTMQEFHRRFHEDTGITFA-SLYPGcIATTGLFReHIPlfRTLFPPFQkyITKGYVSESEAGKR 230
Cdd:PRK06197 171 rYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAvAAHPG-VSNTELAR-NLP--RALRPVAT--VLAPLLAQSPEMGA 244
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79330812  231 LAQVVA--DPSLtKSGVYWSWN---------KTSASfenqlSQEASDVEKARRVWEVSEKLVG 282
Cdd:PRK06197 245 LPTLRAatDPAV-RGGQYYGPDgfgeqrgypKVVAS-----SAQSHDEDLQRRLWAVSEELTG 301
PRK06196 PRK06196
oxidoreductase; Provisional
2-282 8.78e-20

oxidoreductase; Provisional


Pssm-ID: 235736 [Multi-domain]  Cd Length: 315  Bit Score: 87.05  E-value: 8.78e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    2 ACRDFLKAERAAqsAGMPKDSytVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVyqpTANQPTFTAEGFELSVGIN 81
Cdd:PRK06196  56 PARRPDVAREAL--AGIDGVE--VVMLDLADLESVRAFAERFLDSGRRIDILINNAGV---MACPETRVGDGWEAQFATN 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   82 HLGHFLLSRLLIDDLknSDYPSKRLIIVGSItgntntlagnvppkanlgdlrglagglnGLNSSAM-IDGGDFVGA---- 156
Cdd:PRK06196 129 HLGHFALVNLLWPAL--AAGAGARVVALSSA----------------------------GHRRSPIrWDDPHFTRGydkw 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  157 KAYKDSKVCNMLTMQEFHRRFhEDTGITFASLYPGCIATtglfrehiPLFRTLfpPFQKYITKGYVSE-----SEAGKRL 231
Cdd:PRK06196 179 LAYGQSKTANALFAVHLDKLG-KDQGVRAFSVHPGGILT--------PLQRHL--PREEQVALGWVDEhgnpiDPGFKTP 247
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 79330812  232 AQVVA-------DPSLT-KSGVYWS-------WNKTSASFenQLSQEASDVEKARRVWEVSEKLVG 282
Cdd:PRK06196 248 AQGAAtqvwaatSPQLAgMGGLYCEdcdiaepTPKDAPWS--GVRPHAIDPEAAARLWALSAALTG 311
PRK05854 PRK05854
SDR family oxidoreductase;
1-282 2.02e-19

SDR family oxidoreductase;


Pssm-ID: 235627 [Multi-domain]  Cd Length: 313  Bit Score: 86.27  E-value: 2.02e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    1 MACRDFLKAERAAQS--AGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTftAEGFELSV 78
Cdd:PRK05854  43 LPVRNRAKGEAAVAAirTAVPDAKLSLRALDLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQTT--ADGFELQF 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   79 GINHLGHFLLSRLLIDDLKNSdypSKRLIIVGSITGNTNTLagnvppkaNLGDL---RGLAGGlnglnssamidggdfvg 155
Cdd:PRK05854 121 GTNHLGHFALTAHLLPLLRAG---RARVTSQSSIAARRGAI--------NWDDLnweRSYAGM----------------- 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  156 aKAYKDSKVCNMLTMQEFHRRFHEDT-GITFASLYPGcIATTGLF-------REH----IPLFRTL-FPPFqkyitkgYV 222
Cdd:PRK05854 173 -RAYSQSKIAVGLFALELDRRSRAAGwGITSNLAHPG-VAPTNLLaarpevgRDKdtlmVRLIRSLsARGF-------LV 243
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 79330812  223 SESEAGKRLAQVVA-DPSLTKSGVY---WSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVG 282
Cdd:PRK05854 244 GTVESAILPALYAAtSPDAEGGAFYgprGPGELGGGPVEQALYPPLRRNAEAARLWEVSEQLTG 307
FabG COG1028
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and ...
1-114 1.58e-13

NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and metabolism]; NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440651 [Multi-domain]  Cd Length: 249  Bit Score: 68.66  E-value: 1.58e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   1 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVyQPTANQPTFTAEGFELSVGI 80
Cdd:COG1028  35 ITDRDAEALEAAAAELRAAGGRALAVAADVTDEAAVEALVAAAVAAFGRLDILVNNAGI-TPPGPLEELTEEDWDRVLDV 113
                        90       100       110
                ....*....|....*....|....*....|....
gi 79330812  81 NHLGHFLLSRLLIDDLKNSDYPskRLIIVGSITG 114
Cdd:COG1028 114 NLKGPFLLTRAALPHMRERGGG--RIVNISSIAG 145
carb_red_sniffer_like_SDR_c cd05325
carbonyl reductase sniffer-like, classical (c) SDRs; Sniffer is an NADPH-dependent carbonyl ...
2-253 1.43e-11

carbonyl reductase sniffer-like, classical (c) SDRs; Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187586 [Multi-domain]  Cd Length: 233  Bit Score: 62.70  E-value: 1.43e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   2 ACRDflkAERAAQSAGMPK--DSYTVMHLDL-----ASLDSVRQfvdnfRRAEMPLDVLVCNAAVYQPTANQPTFTAEGF 74
Cdd:cd05325  29 TCRD---PSAATELAALGAshSRLHILELDVtdeiaESAEAVAE-----RLGDAGLDVLINNAGILHSYGPASEVDSEDL 100
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  75 ELSVGINHLGHFLLSRLLIDDLKNSdypSKRLII-----VGSITGNTntlagnvppkanlgdlrglagglnglnssamiD 149
Cdd:cd05325 101 LEVFQVNVLGPLLLTQAFLPLLLKG---ARAKIInissrVGSIGDNT--------------------------------S 145
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812 150 GGDFvgakAYKDSKVC-NMLTmQEFHRRFhEDTGITFASLYPGCIAT--TGlfrehiplfrtlfpPFQKyiTKGYVSESE 226
Cdd:cd05325 146 GGWY----SYRASKAAlNMLT-KSLAVEL-KRDGITVVSLHPGWVRTdmGG--------------PFAK--NKGPITPEE 203
                       250       260
                ....*....|....*....|....*..
gi 79330812 227 AGKRLAQVVADPSLTKSGVYWSWNKTS 253
Cdd:cd05325 204 SVAGLLKVIDNLNEEDSGKFLDYDGTE 230
SDR_c cd05233
classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a ...
2-114 2.68e-11

classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212491 [Multi-domain]  Cd Length: 234  Bit Score: 61.92  E-value: 2.68e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   2 ACRDFLKAERAAQSAGMPKDSYTVmHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVyQPTANQPTFTAEGFELSVGIN 81
Cdd:cd05233  28 ADRNEEALAELAAIEALGGNAVAV-QADVSDEEDVEALVEEALEEFGRLDILVNNAGI-ARPGPLEELTDEDWDRVLDVN 105
                        90       100       110
                ....*....|....*....|....*....|...
gi 79330812  82 HLGHFLLSRLLIDDLKNSDYPskRLIIVGSITG 114
Cdd:cd05233 106 LTGVFLLTRAALPHMKKQGGG--RIVNISSVAG 136
YqjQ COG0300
Short-chain dehydrogenase [General function prediction only];
2-114 4.47e-11

Short-chain dehydrogenase [General function prediction only];


Pssm-ID: 440069 [Multi-domain]  Cd Length: 252  Bit Score: 61.42  E-value: 4.47e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   2 ACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQpTFTAEGFELSVGIN 81
Cdd:COG0300  35 VARDAERLEALAAELRAAGARVEVVALDVTDPDAVAALAEAVLARFGPIDVLVNNAGVGGGGPFE-ELDLEDLRRVFEVN 113
                        90       100       110
                ....*....|....*....|....*....|...
gi 79330812  82 HLGHFLLSRLLIDDLKNSdyPSKRLIIVGSITG 114
Cdd:COG0300 114 VFGPVRLTRALLPLMRAR--GRGRIVNVSSVAG 144
carb_red_PTCR-like_SDR_c cd05324
Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR ...
1-195 3.17e-09

Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187585 [Multi-domain]  Cd Length: 225  Bit Score: 55.71  E-value: 3.17e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   1 MACRDFLKAERAA---QSAGMPKDsytvMH-LDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFEL 76
Cdd:cd05324  30 LTARDVERGQAAVeklRAEGLSVR----FHqLDVTDDASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARE 105
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  77 SVGINHLGHFLLSRLLIDDLKNSDYPskRLIIVGSITGNTNTlagnvppkanlgdlrglagglnglnssamidggdfvga 156
Cdd:cd05324 106 TMKTNFFGTVDVTQALLPLLKKSPAG--RIVNVSSGLGSLTS-------------------------------------- 145
                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 79330812 157 kAYKDSKVC-NMLTMqeFHRRFHEDTGITFASLYPGCIAT 195
Cdd:cd05324 146 -AYGVSKAAlNALTR--ILAKELKETGIKVNACCPGWVKT 182
DHRS-12_like_SDR_c-like cd09808
human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like ...
1-210 4.46e-09

human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs; Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187668 [Multi-domain]  Cd Length: 255  Bit Score: 55.68  E-value: 4.46e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   1 MACRDFLKAERA-AQSAGMPKDSYTVMH-LDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVyqpTANQPTFTAEGFELSV 78
Cdd:cd09808  30 MVCRNQTRAEEArKEIETESGNQNIFLHiVDMSDPKQVWEFVEEFKEEGKKLHVLINNAGC---MVNKRELTEDGLEKNF 106
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  79 GINHLGHFLLSRLLIDDLKNSDYPskRLIIVGSitgntntlAGNVPPKANLGDLRGlagglnglnssamiDGGDFVGAKA 158
Cdd:cd09808 107 ATNTLGTYILTTHLIPVLEKEEDP--RVITVSS--------GGMLVQKLNTNNLQS--------------ERTAFDGTMV 162
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 79330812 159 YKDSKVCNMLTMQEFHRRFHEdtgITFASLYPGCIATTGLfREHIPLFRTLF 210
Cdd:cd09808 163 YAQNKRQQVIMTEQWAKKHPE---IHFSVMHPGWADTPAV-RNSMPDFHARF 210
YdfG COG4221
NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Energy production and conversion]; ...
8-114 1.05e-08

NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Energy production and conversion]; NADP-dependent 3-hydroxy acid dehydrogenase YdfG is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 443365 [Multi-domain]  Cd Length: 240  Bit Score: 54.42  E-value: 1.05e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   8 KAERAAQSAGmpkDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPtANQPTFTAEGFELSVGINHLGHFL 87
Cdd:COG4221  41 RLEALAAELG---GRALAVPLDVTDEAAVEAAVAAAVAEFGRLDVLVNNAGVALL-GPLEELDPEDWDRMIDVNVKGVLY 116
                        90       100
                ....*....|....*....|....*..
gi 79330812  88 LSRLLIDDLKNSDypSKRLIIVGSITG 114
Cdd:COG4221 117 VTRAALPAMRARG--SGHIVNISSIAG 141
PRK12829 PRK12829
short chain dehydrogenase; Provisional
9-114 1.41e-07

short chain dehydrogenase; Provisional


Pssm-ID: 183778 [Multi-domain]  Cd Length: 264  Bit Score: 51.60  E-value: 1.41e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    9 AERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGINHLGHFLL 88
Cdd:PRK12829  46 AALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYF 125
                         90       100
                 ....*....|....*....|....*.
gi 79330812   89 SRLLIDDLKNSdyPSKRLIIVGSITG 114
Cdd:PRK12829 126 ARAAVPLLKAS--GHGGVIIALSSVA 149
adh_short pfam00106
short chain dehydrogenase; This family contains a wide variety of dehydrogenases.
8-195 2.22e-07

short chain dehydrogenase; This family contains a wide variety of dehydrogenases.


Pssm-ID: 395056 [Multi-domain]  Cd Length: 195  Bit Score: 49.92  E-value: 2.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812     8 KAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDnFRRAEM-PLDVLVCNAAVyQPTANQPTFTAEGFELSVGINHLGHF 86
Cdd:pfam00106  36 KLEAVAKELGALGGKALFIQGDVTDRAQVKALVE-QAVERLgRLDILVNNAGI-TGLGPFSELSDEDWERVIDVNLTGVF 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    87 LLSRLLIDDLKNSdyPSKRLIIVGSItgntntlAGNVPpkanlgdlrglagglnglnssamidggdFVGAKAYKDSK--V 164
Cdd:pfam00106 114 NLTRAVLPAMIKG--SGGRIVNISSV-------AGLVP----------------------------YPGGSAYSASKaaV 156
                         170       180       190
                  ....*....|....*....|....*....|....
gi 79330812   165 cNMLTM---QEFHRrfhedTGITFASLYPGCIAT 195
Cdd:pfam00106 157 -IGFTRslaLELAP-----HGIRVNAVAPGGVDT 184
PRK12826 PRK12826
SDR family oxidoreductase;
28-114 8.46e-06

SDR family oxidoreductase;


Pssm-ID: 183775 [Multi-domain]  Cd Length: 251  Bit Score: 46.06  E-value: 8.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   28 LDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQpTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPskRLI 107
Cdd:PRK12826  62 VDVRDRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFA-EMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGG--RIV 138

                 ....*..
gi 79330812  108 IVGSITG 114
Cdd:PRK12826 139 LTSSVAG 145
PRK06701 PRK06701
short chain dehydrogenase; Provisional
34-158 2.25e-05

short chain dehydrogenase; Provisional


Pssm-ID: 235853 [Multi-domain]  Cd Length: 290  Bit Score: 45.02  E-value: 2.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   34 DSVRQFVDNFRRaempLDVLVCNAAVYQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDypskRLIIVGSIT 113
Cdd:PRK06701 113 DAVEETVRELGR----LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGS----AIINTGSIT 184
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 79330812  114 GntntLAGNvppkANLGDLRGLAGGLNGLN---SSAMIDGGDFVGAKA 158
Cdd:PRK06701 185 G----YEGN----ETLIDYSATKGAIHAFTrslAQSLVQKGIRVNAVA 224
PRK06484 PRK06484
short chain dehydrogenase; Validated
1-90 3.95e-05

short chain dehydrogenase; Validated


Pssm-ID: 168574 [Multi-domain]  Cd Length: 520  Bit Score: 44.84  E-value: 3.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    1 MACRDFLKAERAAQSAGMPKDSYTVmhlDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTAnQPTF--TAEGFELSV 78
Cdd:PRK06484  34 VADRNVERARERADSLGPDHHALAM---DVSDEAQIREGFEQLHREFGRIDVLVNNAGVTDPTM-TATLdtTLEEFARLQ 109
                         90
                 ....*....|..
gi 79330812   79 GINHLGHFLLSR 90
Cdd:PRK06484 110 AINLTGAYLVAR 121
DHRS1_HSDL2-like_SDR_c cd05338
human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid ...
28-124 4.02e-05

human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs; This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187597 [Multi-domain]  Cd Length: 246  Bit Score: 43.92  E-value: 4.02e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  28 LDLASLDSVRQFVDNFRRAEMPLDVLVCNAAV--YQPTANQPTftaEGFELSVGINHLGHFLLSRLLIDDLKNSDYPskr 105
Cdd:cd05338  71 VDVRDEDQVRALVEATVDQFGRLDILVNNAGAiwLSLVEDTPA---KRFDLMQRVNLRGTYLLSQAALPHMVKAGQG--- 144
                        90
                ....*....|....*....
gi 79330812 106 LIIVGSITGNTNTLAGNVP 124
Cdd:cd05338 145 HILNISPPLSLRPARGDVA 163
HetN_like_SDR_c cd08932
HetN oxidoreductase-like, classical (c) SDR; This subgroup includes Anabaena sp. strain PCC ...
27-146 1.57e-04

HetN oxidoreductase-like, classical (c) SDR; This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212493 [Multi-domain]  Cd Length: 223  Bit Score: 41.96  E-value: 1.57e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  27 HLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEgFELSVGINHLGHFLLSRLLIDDLKNSdyPSKRL 106
Cdd:cd08932  51 PYDARDPEDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAE-LEAHFSINVIAPAELTRALLPALREA--GSGRV 127
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 79330812 107 IIVGSITGNTnTLAGNVPPKANLGDLRGLAGGL------NGLNSSA 146
Cdd:cd08932 128 VFLNSLSGKR-VLAGNAGYSASKFALRALAHALrqegwdHGVRVSA 172
PRK08324 PRK08324
bifunctional aldolase/short-chain dehydrogenase;
8-90 6.00e-04

bifunctional aldolase/short-chain dehydrogenase;


Pssm-ID: 236241 [Multi-domain]  Cd Length: 681  Bit Score: 40.98  E-value: 6.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    8 KAERAAQSAGmPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTfTAEGFELSVGINHLGHFL 87
Cdd:PRK08324 458 AAEAAAAELG-GPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEET-SDEDWRRSFDVNATGHFL 535

                 ...
gi 79330812   88 LSR 90
Cdd:PRK08324 536 VAR 538
SDR_c4 cd08929
classical (c) SDR, subgroup 4; This subgroup has a canonical active site tetrad and a typical ...
29-149 6.24e-04

classical (c) SDR, subgroup 4; This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187634 [Multi-domain]  Cd Length: 226  Bit Score: 40.18  E-value: 6.24e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  29 DLASLDSVRQFVDNFRRAEMPLDVLVCNA--AVYQPTAnqpTFTAEGFELSVGINHLGHFLLSRLLIDDLKnsdyPSKRL 106
Cdd:cd08929  54 DVRDEADVRRAVDAMEEAFGGLDALVNNAgvGVMKPVE---ELTPEEWRLVLDTNLTGAFYCIHKAAPALL----RRGGG 126
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 79330812 107 IIVgsitgNTNTLAGNVPpkanlgdLRGLAG------GLNGLNSSAMID 149
Cdd:cd08929 127 TIV-----NVGSLAGKNA-------FKGGAAynaskfGLLGLSEAAMLD 163
fabG PRK05653
3-oxoacyl-ACP reductase FabG;
8-123 8.92e-04

3-oxoacyl-ACP reductase FabG;


Pssm-ID: 235546 [Multi-domain]  Cd Length: 246  Bit Score: 39.76  E-value: 8.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    8 KAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTAnQPTFTAEGFELSVGINHLGHFL 87
Cdd:PRK05653  41 AAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGALDILVNNAGITRDAL-LPRMSEEDWDRVIDVNLTGTFN 119
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 79330812   88 LSRLLIDDLKNSDYpsKRLIIVGSITGntntLAGNV 123
Cdd:PRK05653 120 VVRAALPPMIKARY--GRIVNISSVSG----VTGNP 149
A3DFK9-like_SDR_c cd09761
Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, ...
10-96 1.60e-03

Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs; This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187662 [Multi-domain]  Cd Length: 242  Bit Score: 39.10  E-value: 1.60e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812  10 ERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPtANQPTFTAEGFELSVGINHLGHFLLS 89
Cdd:cd09761  36 ERGADFAEAEGPNLFFVHGDVADETLVKFVVYAMLEKLGRIDVLVNNAARGSK-GILSSLLLEEWDRILSVNLTGPYELS 114

                ....*..
gi 79330812  90 RLLIDDL 96
Cdd:cd09761 115 RYCRDEL 121
PRK07326 PRK07326
SDR family oxidoreductase;
4-149 3.80e-03

SDR family oxidoreductase;


Pssm-ID: 235990 [Multi-domain]  Cd Length: 237  Bit Score: 38.07  E-value: 3.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812    4 RDFLKAERAAQSAGMPKDSYTVMHlDLASLDSVRQFVDNFRRAEMPLDVLVCNAAV--YQPTAnqpTFTAEGFELSVGIN 81
Cdd:PRK07326  38 RDQKELEEAAAELNNKGNVLGLAA-DVRDEADVQRAVDAIVAAFGGLDVLIANAGVghFAPVE---ELTPEEWRLVIDTN 113
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 79330812   82 HLGHFLLSRLLIDDLKNSD-YpskrLIIVGSITGnTNTLAGNVPPKANlgdlrglAGGLNGLNSSAMID 149
Cdd:PRK07326 114 LTGAFYTIKAAVPALKRGGgY----IINISSLAG-TNFFAGGAAYNAS-------KFGLVGFSEAAMLD 170
DH-DHB-DH_SDR_c cd05331
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; 2,3 dihydro-2,3 ...
9-116 4.22e-03

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187592 [Multi-domain]  Cd Length: 244  Bit Score: 37.83  E-value: 4.22e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812   9 AERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPtFTAEGFELSVGINHLGHFLL 88
Cdd:cd05331  28 LDLPFVLLLEYGDPLRLTPLDVADAAAVREVCSRLLAEHGPIDALVNCAGVLRPGATDP-LSTEDWEQTFAVNVTGVFNL 106
                        90       100
                ....*....|....*....|....*...
gi 79330812  89 SRLLIDDLKnsDYPSKRLIIVGSITGNT 116
Cdd:cd05331 107 LQAVAPHMK--DRRTGAIVTVASNAAHV 132
type1_17beta-HSD-like_SDR_c cd09806
human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, ...
4-59 4.24e-03

human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs; 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187666 [Multi-domain]  Cd Length: 258  Bit Score: 37.82  E-value: 4.24e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 79330812   4 RDFLKAERAAQSAG-MPKDSYTVMHLDLASLDSVRQFVDNFRRAEmpLDVLVCNAAV 59
Cdd:cd09806  35 RDLKKKGRLWEAAGaLAGGTLETLQLDVCDSKSVAAAVERVTERH--VDVLVCNAGV 89
adh_short_C2 pfam13561
Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) ...
8-93 8.80e-03

Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) reductases.


Pssm-ID: 433310 [Multi-domain]  Cd Length: 236  Bit Score: 36.64  E-value: 8.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79330812     8 KAERAAQSAGMPkdsytVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAvYQPTANQPTF--TAEGFELSVGINHLGH 85
Cdd:pfam13561  35 RVEELAEELGAA-----VLPCDVTDEEQVEALVAAAVEKFGRLDILVNNAG-FAPKLKGPFLdtSREDFDRALDVNLYSL 108

                  ....*...
gi 79330812    86 FLLSRLLI 93
Cdd:pfam13561 109 FLLAKAAL 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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