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Conserved domains on  [gi|85725074|ref|NP_001033973|]
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activating transcription factor-2 [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Jnk-SapK_ap_N super family cl48069
JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins ...
302-343 9.95e-04

JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have an RhoGEF pfam00621 domain at their C-terminal end.


The actual alignment was detected with superfamily member pfam09744:

Pssm-ID: 462875 [Multi-domain]  Cd Length: 150  Bit Score: 39.14  E-value: 9.95e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 85725074   302 MRNEHKDLIKQNAQLQQENQELH-ERISRLE-KELQQHRSHSSL 343
Cdd:pfam09744  87 WEQETKDLLSQVESLEEENRRLEaDHVSRLEeKEAELKKEYSKL 130
 
Name Accession Description Interval E-value
Jnk-SapK_ap_N pfam09744
JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins ...
302-343 9.95e-04

JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have an RhoGEF pfam00621 domain at their C-terminal end.


Pssm-ID: 462875 [Multi-domain]  Cd Length: 150  Bit Score: 39.14  E-value: 9.95e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 85725074   302 MRNEHKDLIKQNAQLQQENQELH-ERISRLE-KELQQHRSHSSL 343
Cdd:pfam09744  87 WEQETKDLLSQVESLEEENRRLEaDHVSRLEeKEAELKKEYSKL 130
PRK13169 PRK13169
DNA replication initiation control protein YabA;
302-333 1.82e-03

DNA replication initiation control protein YabA;


Pssm-ID: 183876  Cd Length: 110  Bit Score: 37.53  E-value: 1.82e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 85725074  302 MRNEHKDLIKQNAQLQQENQELHERISRLEKE 333
Cdd:PRK13169  27 LKKQLAELLEENTALRLENDKLRERLEELEAE 58
bZIP_ATF4 cd14692
Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar ...
300-336 6.84e-03

Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain; ATF-4 was also isolated and characterized as the cAMP-response element binding protein 2 (CREB2). It is a Basic leucine zipper (bZIP) transcription factor that has been reported to act as both an activator or repressor. It is a critical component in both the unfolded protein response (UPR) and amino acid response (AAR) pathways. Under certain stress conditions, ATF-4 transcription is increased; accumulation of ATF-4 induces the expression of genes involved in amino acid metabolism and transport, mitochondrial function, redox chemistry, and others that ensure protein synthesis and recovery from stress. bZIP factors act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription.


Pssm-ID: 269840 [Multi-domain]  Cd Length: 63  Bit Score: 34.86  E-value: 6.84e-03
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 85725074 300 NKMRNEHKDLIKQNAQLQQENQELHERISRLEKELQQ 336
Cdd:cd14692  19 QKKREEKEELLSEEEELEDRNRELKDEVEELQREINY 55
FtsB COG2919
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
302-330 9.18e-03

Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442163 [Multi-domain]  Cd Length: 96  Bit Score: 35.24  E-value: 9.18e-03
                        10        20
                ....*....|....*....|....*....
gi 85725074 302 MRNEHKDLIKQNAQLQQENQELHERISRL 330
Cdd:COG2919  34 LRQEIAELEAENAKLKARNAELEAEVADL 62
 
Name Accession Description Interval E-value
Jnk-SapK_ap_N pfam09744
JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins ...
302-343 9.95e-04

JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have an RhoGEF pfam00621 domain at their C-terminal end.


Pssm-ID: 462875 [Multi-domain]  Cd Length: 150  Bit Score: 39.14  E-value: 9.95e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 85725074   302 MRNEHKDLIKQNAQLQQENQELH-ERISRLE-KELQQHRSHSSL 343
Cdd:pfam09744  87 WEQETKDLLSQVESLEEENRRLEaDHVSRLEeKEAELKKEYSKL 130
PRK13169 PRK13169
DNA replication initiation control protein YabA;
302-333 1.82e-03

DNA replication initiation control protein YabA;


Pssm-ID: 183876  Cd Length: 110  Bit Score: 37.53  E-value: 1.82e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 85725074  302 MRNEHKDLIKQNAQLQQENQELHERISRLEKE 333
Cdd:PRK13169  27 LKKQLAELLEENTALRLENDKLRERLEELEAE 58
DivIC pfam04977
Septum formation initiator; DivIC from B. subtilis is necessary for both vegetative and ...
301-332 5.54e-03

Septum formation initiator; DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.


Pssm-ID: 428231 [Multi-domain]  Cd Length: 69  Bit Score: 35.27  E-value: 5.54e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 85725074   301 KMRNEHKDLIKQNAQLQQENQELHERISRLEK 332
Cdd:pfam04977  10 QLKQEIAQLQAEIAKLKQENEELEAEIKDLKS 41
bZIP_ATF4 cd14692
Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar ...
300-336 6.84e-03

Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain; ATF-4 was also isolated and characterized as the cAMP-response element binding protein 2 (CREB2). It is a Basic leucine zipper (bZIP) transcription factor that has been reported to act as both an activator or repressor. It is a critical component in both the unfolded protein response (UPR) and amino acid response (AAR) pathways. Under certain stress conditions, ATF-4 transcription is increased; accumulation of ATF-4 induces the expression of genes involved in amino acid metabolism and transport, mitochondrial function, redox chemistry, and others that ensure protein synthesis and recovery from stress. bZIP factors act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription.


Pssm-ID: 269840 [Multi-domain]  Cd Length: 63  Bit Score: 34.86  E-value: 6.84e-03
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 85725074 300 NKMRNEHKDLIKQNAQLQQENQELHERISRLEKELQQ 336
Cdd:cd14692  19 QKKREEKEELLSEEEELEDRNRELKDEVEELQREINY 55
FtsB COG2919
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
302-330 9.18e-03

Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442163 [Multi-domain]  Cd Length: 96  Bit Score: 35.24  E-value: 9.18e-03
                        10        20
                ....*....|....*....|....*....
gi 85725074 302 MRNEHKDLIKQNAQLQQENQELHERISRL 330
Cdd:COG2919  34 LRQEIAELEAENAKLKARNAELEAEVADL 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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