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Conserved domains on  [gi|222831592|ref|NP_001036040|]
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transmembrane protease serine 7 isoform 1 [Homo sapiens]

Protein Classification

neuropilin and tolloid-like protein; LDL receptor domain-containing protein( domain architecture ID 12017915)

neuropilin and tolloid-like protein is a CUB and LDLa (low-density lipoprotein receptor class A) domain-containing protein similar to Homo sapiens neuropilin and tolloid-like protein 1 involved in the development and/or maintenance of neuronal circuitry| Low Density Lipoprotein (LDL) receptor class A domain is a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; similar to Bos taurus CD320 antigen

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
479-709 1.47e-89

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


:

Pssm-ID: 214473  Cd Length: 229  Bit Score: 279.56  E-value: 1.47e-89
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592   479 RIIGGTDTLEGGWPWQVSLHF-VGSAYCGASVISREWLLSAAHCFHGNRLSDptpWTAHLGMY--VQGNAKFVSPVRRIV 555
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYgGGRHFCGGSLISPRWVLTAAHCVRGSDPSN---IRVRLGSHdlSSGEEGQVIKVSKVI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592   556 VHEYYNSQTFDYDIALLQLSiaWPETLKQLIQPICIPPTGQRVRSGEKCWVTGWGRRHEADNKGSLVLQQAEVELIDQTL 635
Cdd:smart00020  78 IHPNYNPSTYDNDIALLKLK--EPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNAT 155
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 222831592   636 CVSTYG---IITSRMLCAGIMSGKRDACKGDSGGPLSCRrksDGKWILTGIVSWGHGSGRPNFPGVYTRVSNFVPWI 709
Cdd:smart00020 156 CRRAYSgggAITDNMLCAGGLEGGKDACQGDSGGPLVCN---DGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
SEA pfam01390
SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed ...
1-94 9.90e-21

SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed function of regulating or binding carbohydrate side chains. Recently a proteolytic activity has been shown for a SEA domain.


:

Pssm-ID: 460188  Cd Length: 100  Bit Score: 87.29  E-value: 9.90e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592    1 MFRITNIEFLPEYRQKESREFLSVSRTVQQVINLVYTTSAFSKFYEQSVVADVSNNKGGLLVHFWIVFVMPRAKGHIFCE 80
Cdd:pfam01390   6 SFKITNLQYTPDLGNPSSQEFKSLSRRIESLLNELFRNSSLRKQYIKSHVLRLRPDGGSVVVDVVLVFRFPSTEPALDRE 85
                          90
                  ....*....|....
gi 222831592   81 DCVAAILKDSIQTS 94
Cdd:pfam01390  86 KLIEEILRQTLNNT 99
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
358-392 2.52e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.68  E-value: 2.52e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 222831592 358 CPVGSFRCSSGLCVPQAQRCDGVNDCFDESDELFC 392
Cdd:cd00112    1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
121-233 6.29e-10

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 57.04  E-value: 6.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 121 CSQYFYAEH----LSLHYPleiSAASGRLMCHFKLVAIVGYLIRLSIKSIQIEAD-NCVTDSLTIYDSLlPIRSSILYRI 195
Cdd:cd00041    1 CGGTLTASTsgtiSSPNYP---NNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpNCSYDYLEIYDGP-STSSPLLGRF 76
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 222831592 196 CEpTRTLMSFVSTNNLMLVTFKSPHIRRLSGIRAYFEV 233
Cdd:cd00041   77 CG-STLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
433-468 5.81e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 46.43  E-value: 5.81e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 222831592 433 CNNRTFKCGNDICFRKqNAKCDGTVDCPDGSDEEGC 468
Cdd:cd00112    1 CPPNEFRCANGRCIPS-SWVCDGEDDCGDGSDEENC 35
 
Name Accession Description Interval E-value
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
479-709 1.47e-89

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473  Cd Length: 229  Bit Score: 279.56  E-value: 1.47e-89
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592   479 RIIGGTDTLEGGWPWQVSLHF-VGSAYCGASVISREWLLSAAHCFHGNRLSDptpWTAHLGMY--VQGNAKFVSPVRRIV 555
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYgGGRHFCGGSLISPRWVLTAAHCVRGSDPSN---IRVRLGSHdlSSGEEGQVIKVSKVI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592   556 VHEYYNSQTFDYDIALLQLSiaWPETLKQLIQPICIPPTGQRVRSGEKCWVTGWGRRHEADNKGSLVLQQAEVELIDQTL 635
Cdd:smart00020  78 IHPNYNPSTYDNDIALLKLK--EPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNAT 155
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 222831592   636 CVSTYG---IITSRMLCAGIMSGKRDACKGDSGGPLSCRrksDGKWILTGIVSWGHGSGRPNFPGVYTRVSNFVPWI 709
Cdd:smart00020 156 CRRAYSgggAITDNMLCAGGLEGGKDACQGDSGGPLVCN---DGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
480-711 3.42e-89

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 278.78  E-value: 3.42e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 480 IIGGTDTLEGGWPWQVSLHF-VGSAYCGASVISREWLLSAAHCFHGnrlSDPTPWTAHLGMYVQGNAKF---VSPVRRIV 555
Cdd:cd00190    1 IVGGSEAKIGSFPWQVSLQYtGGRHFCGGSLISPRWVLTAAHCVYS---SAPSNYTVRLGSHDLSSNEGggqVIKVKKVI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 556 VHEYYNSQTFDYDIALLQLSiaWPETLKQLIQPICIPPTGQRVRSGEKCWVTGWGRRHEADNKgSLVLQQAEVELIDQTL 635
Cdd:cd00190   78 VHPNYNPSTYDNDIALLKLK--RPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPL-PDVLQEVNVPIVSNAE 154
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 222831592 636 CVSTY---GIITSRMLCAGIMSGKRDACKGDSGGPLSCrrKSDGKWILTGIVSWGHGSGRPNFPGVYTRVSNFVPWIHK 711
Cdd:cd00190  155 CKRAYsygGTITDNMLCAGGLEGGKDACQGDSGGPLVC--NDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQK 231
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
469-716 7.14e-70

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444365 [Multi-domain]  Cd Length: 262  Bit Score: 229.15  E-value: 7.14e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 469 TCSRSSSALHRIIGGTDTLEGGWPWQVSLHFVG---SAYCGASVISREWLLSAAHCFHGNRLSDptpWTAHLGMY-VQGN 544
Cdd:COG5640   20 AAAPAADAAPAIVGGTPATVGEYPWMVALQSSNgpsGQFCGGTLIAPRWVLTAAHCVDGDGPSD---LRVVIGSTdLSTS 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 545 AKFVSPVRRIVVHEYYNSQTFDYDIALLQLSIAWPEtlkqlIQPICIPPTGQRVRSGEKCWVTGWGRRHEADNKGSLVLQ 624
Cdd:COG5640   97 GGTVVKVARIVVHPDYDPATPGNDIALLKLATPVPG-----VAPAPLATSADAAAPGTPATVAGWGRTSEGPGSQSGTLR 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 625 QAEVELIDQTLCVSTYGIITSRMLCAGIMSGKRDACKGDSGGPLscRRKSDGKWILTGIVSWGHGSGRPNFPGVYTRVSN 704
Cdd:COG5640  172 KADVPVVSDATCAAYGGFDGGTMLCAGYPEGGKDACQGDSGGPL--VVKDGGGWVLVGVVSWGGGPCAAGYPGVYTRVSA 249
                        250
                 ....*....|..
gi 222831592 705 FVPWIHKYVPSL 716
Cdd:COG5640  250 YRDWIKSTAGGL 261
Trypsin pfam00089
Trypsin;
480-709 1.91e-65

Trypsin;


Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 215.77  E-value: 1.91e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592  480 IIGGTDTLEGGWPWQVSLHFVGSAY-CGASVISREWLLSAAHCFHGNrlSDPTPWT-AHLGMYVQGNAKFVsPVRRIVVH 557
Cdd:pfam00089   1 IVGGDEAQPGSFPWQVSLQLSSGKHfCGGSLISENWVLTAAHCVSGA--SDVKVVLgAHNIVLREGGEQKF-DVEKIIVH 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592  558 EYYNSQTFDYDIALLQLSIawPETLKQLIQPICIPPTGQRVRSGEKCWVTGWGRrhEADNKGSLVLQQAEVELIDQTLCV 637
Cdd:pfam00089  78 PNYNPDTLDNDIALLKLES--PVTLGDTVRPICLPDASSDLPVGTTCTVSGWGN--TKTLGPSDTLQEVTVPVVSRETCR 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 222831592  638 STYGI-ITSRMLCAGimSGKRDACKGDSGGPLSCRRKsdgkwILTGIVSWGHGSGRPNFPGVYTRVSNFVPWI 709
Cdd:pfam00089 154 SAYGGtVTDTMICAG--AGGKDACQGDSGGPLVCSDG-----ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 219
SEA pfam01390
SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed ...
1-94 9.90e-21

SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed function of regulating or binding carbohydrate side chains. Recently a proteolytic activity has been shown for a SEA domain.


Pssm-ID: 460188  Cd Length: 100  Bit Score: 87.29  E-value: 9.90e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592    1 MFRITNIEFLPEYRQKESREFLSVSRTVQQVINLVYTTSAFSKFYEQSVVADVSNNKGGLLVHFWIVFVMPRAKGHIFCE 80
Cdd:pfam01390   6 SFKITNLQYTPDLGNPSSQEFKSLSRRIESLLNELFRNSSLRKQYIKSHVLRLRPDGGSVVVDVVLVFRFPSTEPALDRE 85
                          90
                  ....*....|....
gi 222831592   81 DCVAAILKDSIQTS 94
Cdd:pfam01390  86 KLIEEILRQTLNNT 99
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
358-392 2.52e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.68  E-value: 2.52e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 222831592 358 CPVGSFRCSSGLCVPQAQRCDGVNDCFDESDELFC 392
Cdd:cd00112    1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
358-389 3.36e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 3.36e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 222831592   358 CPVGSFRCSSGLCVPQAQRCDGVNDCFDESDE 389
Cdd:smart00192   2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
121-233 6.29e-10

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 57.04  E-value: 6.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 121 CSQYFYAEH----LSLHYPleiSAASGRLMCHFKLVAIVGYLIRLSIKSIQIEAD-NCVTDSLTIYDSLlPIRSSILYRI 195
Cdd:cd00041    1 CGGTLTASTsgtiSSPNYP---NNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpNCSYDYLEIYDGP-STSSPLLGRF 76
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 222831592 196 CEpTRTLMSFVSTNNLMLVTFKSPHIRRLSGIRAYFEV 233
Cdd:cd00041   77 CG-STLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
357-392 4.04e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 46.86  E-value: 4.04e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 222831592  357 PCPVGSFRCSSGLCVPQAQRCDGVNDCFDESDELFC 392
Cdd:pfam00057   2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
147-231 5.31e-07

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 48.54  E-value: 5.31e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592   147 CHFKLVAIVGYLIRLSIKSIQIEA-DNCVTDSLTIYDSLlPIRSSILYRICEPTRTLMSFVSTNNLMLVTFKSPHIRRLS 225
Cdd:smart00042  18 CVWTIRAPPGYRIELQFTDFDLESsDNCEYDYVEIYDGP-SASSPLLGRFCGSEAPPPVISSSSNSLTLTFVSDSSVQKR 96

                   ....*.
gi 222831592   226 GIRAYF 231
Cdd:smart00042  97 GFSARY 102
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
433-468 5.81e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 46.43  E-value: 5.81e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 222831592 433 CNNRTFKCGNDICFRKqNAKCDGTVDCPDGSDEEGC 468
Cdd:cd00112    1 CPPNEFRCANGRCIPS-SWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
433-465 3.82e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 43.78  E-value: 3.82e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 222831592   433 CNNRTFKCGNDICfRKQNAKCDGTVDCPDGSDE 465
Cdd:smart00192   2 CPPGEFQCDNGRC-IPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
438-468 6.51e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.69  E-value: 6.51e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 222831592  438 FKCGNDICFrKQNAKCDGTVDCPDGSDEEGC 468
Cdd:pfam00057   8 FQCGSGECI-PRSWVCDGDPDCGDGSDEENC 37
CUB pfam00431
CUB domain;
122-231 9.33e-03

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 36.50  E-value: 9.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592  122 SQYFYaehlSLHYPleiSAASGRLMCHFKLVAIVGYLIRLSIKSIQIEA-DNCVTDSLTIYDSllPIRSSILY-RICEPT 199
Cdd:pfam00431   9 SGSIS----SPNYP---NPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDhDECGYDYVEIRDG--PSASSPLLgRFCGSG 79
                          90       100       110
                  ....*....|....*....|....*....|..
gi 222831592  200 RTLmSFVSTNNLMLVTFKSPHIRRLSGIRAYF 231
Cdd:pfam00431  80 IPE-DIVSSSNQMTIKFVSDASVQKRGFKATY 110
 
Name Accession Description Interval E-value
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
479-709 1.47e-89

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473  Cd Length: 229  Bit Score: 279.56  E-value: 1.47e-89
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592   479 RIIGGTDTLEGGWPWQVSLHF-VGSAYCGASVISREWLLSAAHCFHGNRLSDptpWTAHLGMY--VQGNAKFVSPVRRIV 555
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYgGGRHFCGGSLISPRWVLTAAHCVRGSDPSN---IRVRLGSHdlSSGEEGQVIKVSKVI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592   556 VHEYYNSQTFDYDIALLQLSiaWPETLKQLIQPICIPPTGQRVRSGEKCWVTGWGRRHEADNKGSLVLQQAEVELIDQTL 635
Cdd:smart00020  78 IHPNYNPSTYDNDIALLKLK--EPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNAT 155
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 222831592   636 CVSTYG---IITSRMLCAGIMSGKRDACKGDSGGPLSCRrksDGKWILTGIVSWGHGSGRPNFPGVYTRVSNFVPWI 709
Cdd:smart00020 156 CRRAYSgggAITDNMLCAGGLEGGKDACQGDSGGPLVCN---DGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
480-711 3.42e-89

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 278.78  E-value: 3.42e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 480 IIGGTDTLEGGWPWQVSLHF-VGSAYCGASVISREWLLSAAHCFHGnrlSDPTPWTAHLGMYVQGNAKF---VSPVRRIV 555
Cdd:cd00190    1 IVGGSEAKIGSFPWQVSLQYtGGRHFCGGSLISPRWVLTAAHCVYS---SAPSNYTVRLGSHDLSSNEGggqVIKVKKVI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 556 VHEYYNSQTFDYDIALLQLSiaWPETLKQLIQPICIPPTGQRVRSGEKCWVTGWGRRHEADNKgSLVLQQAEVELIDQTL 635
Cdd:cd00190   78 VHPNYNPSTYDNDIALLKLK--RPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPL-PDVLQEVNVPIVSNAE 154
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 222831592 636 CVSTY---GIITSRMLCAGIMSGKRDACKGDSGGPLSCrrKSDGKWILTGIVSWGHGSGRPNFPGVYTRVSNFVPWIHK 711
Cdd:cd00190  155 CKRAYsygGTITDNMLCAGGLEGGKDACQGDSGGPLVC--NDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQK 231
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
469-716 7.14e-70

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444365 [Multi-domain]  Cd Length: 262  Bit Score: 229.15  E-value: 7.14e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 469 TCSRSSSALHRIIGGTDTLEGGWPWQVSLHFVG---SAYCGASVISREWLLSAAHCFHGNRLSDptpWTAHLGMY-VQGN 544
Cdd:COG5640   20 AAAPAADAAPAIVGGTPATVGEYPWMVALQSSNgpsGQFCGGTLIAPRWVLTAAHCVDGDGPSD---LRVVIGSTdLSTS 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 545 AKFVSPVRRIVVHEYYNSQTFDYDIALLQLSIAWPEtlkqlIQPICIPPTGQRVRSGEKCWVTGWGRRHEADNKGSLVLQ 624
Cdd:COG5640   97 GGTVVKVARIVVHPDYDPATPGNDIALLKLATPVPG-----VAPAPLATSADAAAPGTPATVAGWGRTSEGPGSQSGTLR 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 625 QAEVELIDQTLCVSTYGIITSRMLCAGIMSGKRDACKGDSGGPLscRRKSDGKWILTGIVSWGHGSGRPNFPGVYTRVSN 704
Cdd:COG5640  172 KADVPVVSDATCAAYGGFDGGTMLCAGYPEGGKDACQGDSGGPL--VVKDGGGWVLVGVVSWGGGPCAAGYPGVYTRVSA 249
                        250
                 ....*....|..
gi 222831592 705 FVPWIHKYVPSL 716
Cdd:COG5640  250 YRDWIKSTAGGL 261
Trypsin pfam00089
Trypsin;
480-709 1.91e-65

Trypsin;


Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 215.77  E-value: 1.91e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592  480 IIGGTDTLEGGWPWQVSLHFVGSAY-CGASVISREWLLSAAHCFHGNrlSDPTPWT-AHLGMYVQGNAKFVsPVRRIVVH 557
Cdd:pfam00089   1 IVGGDEAQPGSFPWQVSLQLSSGKHfCGGSLISENWVLTAAHCVSGA--SDVKVVLgAHNIVLREGGEQKF-DVEKIIVH 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592  558 EYYNSQTFDYDIALLQLSIawPETLKQLIQPICIPPTGQRVRSGEKCWVTGWGRrhEADNKGSLVLQQAEVELIDQTLCV 637
Cdd:pfam00089  78 PNYNPDTLDNDIALLKLES--PVTLGDTVRPICLPDASSDLPVGTTCTVSGWGN--TKTLGPSDTLQEVTVPVVSRETCR 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 222831592  638 STYGI-ITSRMLCAGimSGKRDACKGDSGGPLSCRRKsdgkwILTGIVSWGHGSGRPNFPGVYTRVSNFVPWI 709
Cdd:pfam00089 154 SAYGGtVTDTMICAG--AGGKDACQGDSGGPLVCSDG-----ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 219
SEA pfam01390
SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed ...
1-94 9.90e-21

SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed function of regulating or binding carbohydrate side chains. Recently a proteolytic activity has been shown for a SEA domain.


Pssm-ID: 460188  Cd Length: 100  Bit Score: 87.29  E-value: 9.90e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592    1 MFRITNIEFLPEYRQKESREFLSVSRTVQQVINLVYTTSAFSKFYEQSVVADVSNNKGGLLVHFWIVFVMPRAKGHIFCE 80
Cdd:pfam01390   6 SFKITNLQYTPDLGNPSSQEFKSLSRRIESLLNELFRNSSLRKQYIKSHVLRLRPDGGSVVVDVVLVFRFPSTEPALDRE 85
                          90
                  ....*....|....
gi 222831592   81 DCVAAILKDSIQTS 94
Cdd:pfam01390  86 KLIEEILRQTLNNT 99
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
358-392 2.52e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.68  E-value: 2.52e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 222831592 358 CPVGSFRCSSGLCVPQAQRCDGVNDCFDESDELFC 392
Cdd:cd00112    1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
358-389 3.36e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 3.36e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 222831592   358 CPVGSFRCSSGLCVPQAQRCDGVNDCFDESDE 389
Cdd:smart00192   2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
121-233 6.29e-10

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 57.04  E-value: 6.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592 121 CSQYFYAEH----LSLHYPleiSAASGRLMCHFKLVAIVGYLIRLSIKSIQIEAD-NCVTDSLTIYDSLlPIRSSILYRI 195
Cdd:cd00041    1 CGGTLTASTsgtiSSPNYP---NNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpNCSYDYLEIYDGP-STSSPLLGRF 76
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 222831592 196 CEpTRTLMSFVSTNNLMLVTFKSPHIRRLSGIRAYFEV 233
Cdd:cd00041   77 CG-STLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
357-392 4.04e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 46.86  E-value: 4.04e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 222831592  357 PCPVGSFRCSSGLCVPQAQRCDGVNDCFDESDELFC 392
Cdd:pfam00057   2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
147-231 5.31e-07

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 48.54  E-value: 5.31e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592   147 CHFKLVAIVGYLIRLSIKSIQIEA-DNCVTDSLTIYDSLlPIRSSILYRICEPTRTLMSFVSTNNLMLVTFKSPHIRRLS 225
Cdd:smart00042  18 CVWTIRAPPGYRIELQFTDFDLESsDNCEYDYVEIYDGP-SASSPLLGRFCGSEAPPPVISSSSNSLTLTFVSDSSVQKR 96

                   ....*.
gi 222831592   226 GIRAYF 231
Cdd:smart00042  97 GFSARY 102
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
433-468 5.81e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 46.43  E-value: 5.81e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 222831592 433 CNNRTFKCGNDICFRKqNAKCDGTVDCPDGSDEEGC 468
Cdd:cd00112    1 CPPNEFRCANGRCIPS-SWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
433-465 3.82e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 43.78  E-value: 3.82e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 222831592   433 CNNRTFKCGNDICfRKQNAKCDGTVDCPDGSDE 465
Cdd:smart00192   2 CPPGEFQCDNGRC-IPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
438-468 6.51e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.69  E-value: 6.51e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 222831592  438 FKCGNDICFrKQNAKCDGTVDCPDGSDEEGC 468
Cdd:pfam00057   8 FQCGSGECI-PRSWVCDGDPDCGDGSDEENC 37
CUB pfam00431
CUB domain;
122-231 9.33e-03

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 36.50  E-value: 9.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222831592  122 SQYFYaehlSLHYPleiSAASGRLMCHFKLVAIVGYLIRLSIKSIQIEA-DNCVTDSLTIYDSllPIRSSILY-RICEPT 199
Cdd:pfam00431   9 SGSIS----SPNYP---NPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDhDECGYDYVEIRDG--PSASSPLLgRFCGSG 79
                          90       100       110
                  ....*....|....*....|....*....|..
gi 222831592  200 RTLmSFVSTNNLMLVTFKSPHIRRLSGIRAYF 231
Cdd:pfam00431  80 IPE-DIVSSSNQMTIKFVSDASVQKRGFKATY 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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