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Conserved domains on  [gi|221459933|ref|NP_001036762|]
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uncharacterized protein Dmel_CG3339 [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AAA_6 pfam12774
Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic ...
2095-2421 0e+00

Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities: AAA1-AAA6). This is the first site (out of four nucleotide binding sites in the dynein motor) where the movement depends on ATP hydrolysis. When this site is nucleotide free or bound to ADP, the microtubule binding domain (MTBD) binds to the microtubule and the linker adopts the straight post-power-stroke conformation. Upon ATP binding and hydrolysis, the MTBD detaches from the microtubule and the linker is primed into the pre-power-stroke conformation. Dynein's AAA+ domains are each divided into an alpha/beta large subdomain designated with an L and and alpha small subdomains designated with an S. This is the AAA1 large (AAA1L) subdomain with the accompanying small subdomain (AAA1S). AAA1L, AAA1S and AAA2L enclose ADP.vanadate (ADP.Vi, ATP-hydrolysis transition state analogue). The AAA1L sensor-I loop, which varies in position depending on dynein's nucleotide state, swings in to contact AAA2L forming the important AAA1 nucleotide-binding site.


:

Pssm-ID: 463697 [Multi-domain]  Cd Length: 327  Bit Score: 637.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2095 YAYEYLGNTSRLVITPLTDRCYITLTQSLRLRLAGATAGPAGTGKTETTKDLGRALGVMVYVFNCSEQMDYKSCGNIYKG 2174
Cdd:pfam12774    1 YGYEYLGNSGRLVITPLTDRCYLTLTQALHLHLGGAPAGPAGTGKTETVKDLAKALAKQVVVFNCSDGLDYKSMGRIFKG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2175 LAQTGAWGCFDEFNRICVEVLSVVAVQVKTIQEAIKMHKTQFIFMGERISLEPSVGIFITMNPGYAGRTELPENLKTLFR 2254
Cdd:pfam12774   81 LAQCGAWGCFDEFNRIDIEVLSVVAQQILTIQQALAANLKTFVFEGSEIKLNPSCGIFITMNPGYAGRTELPDNLKALFR 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2255 PCAMIVPDFALICEIMLMAEGFQDARLLARKFITLYTLCKELLSKQDHYDWGLRAIKSVLVVAGTLKRDDHSRPEDQVLM 2334
Cdd:pfam12774  161 PVAMMVPDYALIAEIMLFSEGFSDAKVLAKKLVTLYKLCSEQLSKQDHYDFGLRALKSVLVTAGSLKRSNPNLNEDVLLL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2335 RALRDFNIPKIVTEDVPIFMGLIGDLFPALDVPRKRVFEFEKTIRRAVNEIKLQPEEGFLMKVVQLQELLDVRHSVFIVG 2414
Cdd:pfam12774  241 RALRDMNLPKLVADDVPLFLGLISDLFPGVELPPSDYGELEEAIEEVCKELGLQPHDAFILKVIQLYETMLVRHGVMLVG 320

                   ....*..
gi 221459933  2415 NAGTGKT 2421
Cdd:pfam12774  321 PTGSGKT 327
MT super family cl37598
Microtubule-binding stalk of dynein motor; the 380 kDa motor unit of dynein belongs to the AAA ...
3419-3759 2.67e-143

Microtubule-binding stalk of dynein motor; the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This family is the region between D4 and D5 and is the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component.


The actual alignment was detected with superfamily member pfam12777:

Pssm-ID: 463699 [Multi-domain]  Cd Length: 344  Bit Score: 451.45  E-value: 2.67e-143
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3419 RLQSGMSKLAECARQVDTLKHQLAIQEVQLAAKNAAADKLIVIVSAESEKVKRERYIASEEEKRVRIIEEDVSIKTKMCE 3498
Cdd:pfam12777    2 RLENGLLKLHSTAAQVDDLKAKLAAQEAELKQKNEDADKLIQVVGIEADKVSKEKAIADEEEQKVAVIMKEVKEKQKACE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3499 EDLRQAEPALVAAQAALNTLNKNNLTELKSFGSPPKAVVNVCAAVMVLLASNGKIPRDRSWKASKLMMVRVDQFLNDLLN 3578
Cdd:pfam12777   82 EDLAKAEPALLAAQAALDTLNKNNLTELKSFGSPPDAVSNVSAAVMILMAPGGKIPKDKSWKAAKIMMAKVDGFLDSLIK 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3579 YNKDNIHPNIIETLQEYLKDPEFNPDKVVQKSVAAAGLCAWVINLHRYHQVFLIVGPKQQALQDSHQELLEARERLQYLK 3658
Cdd:pfam12777  162 FDKEHIHEACLKAFKPYLGDPEFDPEFIASKSTAAAGLCSWCINIVRFYEVFCDVAPKRQALEEANADLAAAQEKLAAIK 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3659 AKINNLEAKLAEIQAEFENAVGEKQRCQREADKTAFTIDLAHRLVNGLANENVRWKESVQSLLAKIGTLPGDILLISSFL 3738
Cdd:pfam12777  242 AKIAELNANLAKLTAAFEKATADKIKCQQEADATARTILLANRLVGGLASENIRWADAVENFKQQERTLCGDILLISAFI 321
                          330       340
                   ....*....|....*....|.
gi 221459933  3739 SYVGCFTRRYREELQHKMWLP 3759
Cdd:pfam12777  322 SYLGFFTKKYRNELLDKFWIP 342
DHC_N2 pfam08393
Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic ...
1532-1943 3.09e-126

Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. This region is found C-terminal to the dynein heavy chain N-terminal region 1 (pfam08385) in many members of this family. No functions seem to have been attributed specifically to this region.


:

Pssm-ID: 462462 [Multi-domain]  Cd Length: 402  Bit Score: 404.72  E-value: 3.09e-126
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1532 LQFCEVELRRVKQLWDFVRVIESCIVAWHATPWLLIDTDDMEHECKKFTRDLRTLDKCIREWAPYVHIVGVLRELVASLR 1611
Cdd:pfam08393    1 LEEIKKELEPLKKLWDLVSEWQESLEEWKNGPFSDLDVEELEEELEEFLKELKKLPKELRDWDVAEELKKKIDDFKKSLP 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1612 AITELQNPAITERHWMELMQLTKLSYKCNKSTRLAQLLTLQLQH-HEEDIKNTVDRAIKEMTVTKVLDEIKATWAHLEFE 1690
Cdd:pfam08393   81 LIEDLRNPALRERHWKQLSEILGFDFDPLSEFFTLGDLLDLNLHkYEEEIEEISEQASKEYSIEKALKKIEEEWKTMEFE 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1691 LEQHHTRpHIQLLKVSEELIETLDDNQMQLQNISTSKHIEYLLDKLTHWQKVLGGIDTLIVNWFEVQRKWIYLECIFIGS 1770
Cdd:pfam08393  161 LVPYKDT-GTFILKGWDEIQELLDDHLVKLQSMKSSPYVKPFEEEVSEWEKKLSLLQEILDEWLKVQRKWLYLEPIFSSE 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1771 aDIRAQLPADAANFERIDEDFTALLAKVQEVRVVMQVVLRhDDVLAQLLQLQHRLAVCEKALNDYLETKRLAFPRFYFIS 1850
Cdd:pfam08393  240 -DIRKQLPEEAKRFQNVDKEWKKIMKKAVKDPNVLEACNI-PGLLEKLEELNELLEKIQKSLNEYLEKKRLAFPRFYFLS 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1851 AADLLDILSNGNNPQVIDRHLIKLFDSILRLQYETNTpNALGMHSKENdEYVPFVSfdpdqpAFIVCGGRVELWLRAIIQ 1930
Cdd:pfam08393  318 NDELLEILSQTKDPTRVQPHLKKCFEGIASLEFDENK-EITGMISKEG-EVVPFSK------PPVEAKGNVEEWLNELEE 389
                          410
                   ....*....|...
gi 221459933  1931 QMRSTLHELFRRA 1943
Cdd:pfam08393  390 EMRETLRDLLKEA 402
Dynein_C pfam18199
Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein ...
4545-4840 2.01e-112

Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading over the AAA1, AAA5 and AAA6 domain.


:

Pssm-ID: 465677  Cd Length: 301  Bit Score: 360.78  E-value: 2.01e-112
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4545 TTASEQLLRTIFELQPRESELSSHCGAPREELVKIMIDDFLDKLQDEFNLQALLNR--VERKTPFVVVALQECERMNALI 4622
Cdd:pfam18199    1 TNETNELLSTLLSLQPRSDSGGGGGGSSREEIVLELAKDILEKLPEPFDIEEAEEKypVGYEDPLNTVLLQEIERFNKLL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4623 REIKRSLRELMLGLRGELTITQEMERLDHAIFYDHVPAAWARLAYPSMLGLQSWFADLLHRIKELAGWLNDFKLPCAIWL 4702
Cdd:pfam18199   81 KVIRRSLQDLQKAIKGLVVMSSELEELANSLLNGKVPESWAKKSYPSLKPLGSWIRDLLERLKQLQDWLDDEGPPKVFWL 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4703 GGLFNPQSFLTAIMQESARKHDLPLDRMLISCDVTKK-QKDDVTLPPMEGAFVHDLYMDGASWDCQLNSIVALRPKEMLC 4781
Cdd:pfam18199  161 SGFFFPQAFLTAVLQNYARKNGWPIDKLSFDFEVTKKvSPEEVTEPPEDGVYVHGLFLEGARWDRKNGCLVESEPKELFS 240
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221459933  4782 AMPVIYIKSIVQEKQELQR-VYECPLYKTRSRGNT-YVWTFNLKTRERPSRWILGGVALLL 4840
Cdd:pfam18199  241 PLPVIHLKPVESDKKKLDEnTYECPVYKTSERHSTnFVFSVDLPTDKPPDHWILRGVALLL 301
DYN1 super family cl34955
Dynein, heavy chain [Cytoskeleton];
1759-4514 1.94e-108

Dynein, heavy chain [Cytoskeleton];


The actual alignment was detected with superfamily member COG5245:

Pssm-ID: 227570 [Multi-domain]  Cd Length: 3164  Bit Score: 391.66  E-value: 1.94e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1759 KWIYLECIFIGSADIRAQLPADAANFERIDEDFTALLAKVQEVRVVMQVVlrHDDVLAQLLQLQHRLAVCEKALNDYLET 1838
Cdd:COG5245   626 RRLDEYLMMMSLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVSGCEAINTI--LEDVGDDLDLFYKEMDQVFMSIEKVLGL 703
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1839 KRLAFPRFyfISAADLLDILSNGNNPQVIDRHLIKLFDSIlrlqyETNTPNALGMHSKEndeyvpfvSFDPDQPAFIvcg 1918
Cdd:COG5245   704 RWREVERA--SEVEELMDRVRELENRVYSYRFFVKKIAKE-----EMKTVFSSRIQKKE--------PFSLDSEAYV--- 765
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1919 GRVELWLRAIIQQ-MRSTLHELFRRALRVFGE----KPRELWLYDWPAQVALCCSQIsWTADVNRsfgCMEEGYEGVMKE 1993
Cdd:COG5245   766 GFFRLYEKSIVIRgINRSMGRVLSQYLESVQEaleiEDGSFFVSRHRVRDGGLEKGR-GCDAWEN---CFDPPLSEYFRI 841
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1994 LHKRQIAQLNALINLLLGELSPGDRQKImtictidvHSRDVVG--KIIASKVDNSLAFQWQSQLRHRWDDDQAGSSSGRA 2071
Cdd:COG5245   842 LEKIFPSEEGYFFDEVLKRLDPGHEIKS--------RIEEIIRmvTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSYR 913
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2072 StaiscgggdedcfanicdaefRYAYEYLGNTSRLVITPLTDRCYITLTQSLRLRLAGAtagpAGTGKTETTKDLGRALG 2151
Cdd:COG5245   914 S---------------------AEMFAKNTIPFFVFEHSMDTSQHQKLFEAVCDEVCRF----VDTENSRVYGMLVAGKG 968
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2152 VMVyvfncsEQMDYKScgNIYKGLAQTGAWGcFDEFNRIcVEVLSVVAVQVKTIQEAIKMHKTQFIFMGERISLEPSVGI 2231
Cdd:COG5245   969 RIY------DGTEPRS--RIEAGPICEEERG-TEESALL-DEISRTILVDEYLNSDEFRMLEELNSAVVEHGLKSPSTPV 1038
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2232 FITMNPgyagRTELPENLKTLFRPCAMIVPdFALICEIMlmaegfqdaRLLARKFITLYTLCKELLSKQDHYDWglRAIK 2311
Cdd:COG5245  1039 EMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSRR---------ESLDREIGAFNNEVDGIAREEDELMF--YPMF 1102
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2312 SVLvvagtlkRDDHSRPED--QVLMRALRDFNIPkivtedvpifmgLIGDLFpaldVPRKRVFEFEKTIRRAVNEIKLQP 2389
Cdd:COG5245  1103 KSL-------KAKHRMLEEktEYLNKILSITGLP------------LISDTL----RERIDTLDAEWDSFCRISESLKKY 1159
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2390 E----EGFLM-KVVQLQELLDVRHSVFIVGNAGTGKTKIWQTlretyriqklkpVC----HVLNPKALsnDELFgivnPT 2460
Cdd:COG5245  1160 EsqqvSGLDVaQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTD------------ACdylwHVKSPYVK--KKYF----DA 1221
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2461 TREWKdGLFSSIMREQANMPPGNPK-WIVLDGdidpmWIESLNTLMDDNKILTLASNERislkremRLLFEvgHLkAATP 2539
Cdd:COG5245  1222 DMELR-QFFLMFNREDMEARLADSKmEYEVER-----YVEKTKAEVSSLKLELSSVGEG-------QVVVS--NL-GSIG 1285
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2540 ATVSRAGILYINPQDLGwspyVSSWLETRVDMIERGILNALfeKYFPCLMQRQRdfrritpITDMAMIQMTCHLLECLLD 2619
Cdd:COG5245  1286 DKVGRCLVEYDSISRLS----TKGVFLDELGDTKRYLDECL--DFFSCFEEVQK-------EIDELSMVFCADALRFSAD 1352
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2620 SDEGNADGRGRGSATGGAANPHSLHHGE-----LSHEAMVMALETIFVYATVWsfgsALSQDVIIDWHREFHKWWIGEF- 2693
Cdd:COG5245  1353 LYHIVKERRFSGVLAGSDASESLGGKSIelaaiLEHKDLIVEMKRGINDVLKL----RIFGDKCRESTPRFYLISDGDLi 1428
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2694 ---KDIKLPSQGTVFDYQLNVQTlkfQPWSELAAhQSLEGqidSETPL-QNVLISTAETIRLAYFLKLLIDRNLACMLVG 2769
Cdd:COG5245  1429 kdlNERSDYEEMLIMMFNISAVI---TNNGSIAG-FELRG---ERVMLrKEVVIPTSDTGFVDSFSNEALNTLRSYIYCG 1501
                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2770 NSGCGKGAIfrqLFGQYANDQELlevavsaatagdsshqqqsgnpagAVVVRRKASSSATPLLTTVQATHFNFYTSSEIF 2849
Cdd:COG5245  1502 PPGSGKEML---MCPSLRSELIT------------------------EVKYFNFSTCTMTPSKLSVLERETEYYPNTGVV 1554
                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2850 qKMLDRPLEKKsgrcyapsgpkrrLIYFVNDLNMPEVDAYGTVQPHTIMRQFMDYRQWYDRQRLQLKDIRHCQFAACMNP 2929
Cdd:COG5245  1555 -RLYPKPVVKD-------------LVLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNP 1620
                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2930 --TAGSFTIDPRLQRHFCVFSVAPPGEDTLHHIYGSIL-SSHLESPsqgftkEIRSIGSLLVRVGIALHRRVEYAFlPTA 3006
Cdd:COG5245  1621 gtDEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLmGSYLCFD------EFNRLSEETMSASVELYLSSKDKT-KFF 1693
                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3007 LKFHYLFNLRDLTGIYQGLMNSVGAPASAGGGgasgfggticsrpsELMRLYVHEAFRVYHDRLVDPYDIKSFKSSIRDI 3086
Cdd:COG5245  1694 LQMNYGYKPRELTRSLRAIFGYAETRIDTPDV--------------SLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDF 1759
                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3087 FKKDFEDFDEDFVFAEPLIYS---HFAQSLVDQKymplkswdSLYQLLIEAQASYNEVVGYMNLVLFEDAMIHVCRINRI 3163
Cdd:COG5245  1760 GLRAIREMIAGHIGEAEITFSmilFFGMACLLKK--------DLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRG 1831
                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3164 LESPRGNALLIGVGGSGKQTLARLAAFISSLNVSQIQIKRGFGLLDMREEIGNLYMKVGLKNLASVFLISDAQIPDESIL 3243
Cdd:COG5245  1832 LLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRDELTGDFRDSLKVQDLRRNIHGGRECLFIFESIPVESSFL 1911
                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3244 MLINDLLASGEIPELFNDDQLDTITNGIRNEVK-QSGTLDTKENCWRYFVEKVRRLLKVVLCFSPVGQTLRVRARKFPAI 3322
Cdd:COG5245  1912 EDFNPLLDNNRFLCLFSGNERIRIPENLRFVFEsTSLEKDTEATLTRVFLVYMEENLPVVFSACCSQDTSVLAGIRSPAL 1991
                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3323 ISRTAIDWFHEWPKSAL---------ESVSQKFLNEINGilEPALVPPIGCFMAYVHGTVNQISRIYLQNEKR-YNYTTP 3392
Cdd:COG5245  1992 KNRCFIDFKKLWDTEEMsqyansvetLSRDGGRVFFING--ELGVGKGALISEVFGDDAVVIEGRGFEISMIEgSLGESK 2069
                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3393 KTFLEYIFLYRKLLVDKNGEFAERIARLQSGMSKLAECARQVDTLKHQLAIQEVQLAAKNAAADKLIVIVSAESEKVKRE 3472
Cdd:COG5245  2070 IKFIGGLKVYDARCVIYIEELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKNADDALSGTPGERLEREVK 2149
                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3473 RYIASEEEKRVRIIEEDVSIKTKMCEEDLRQAEPALVAAQAALNTLNKNNLTELKSFGSPPKAVVNVCAAVMVLLASNGK 3552
Cdd:COG5245  2150 SVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAK 2229
                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3553 IPRDRSwkasklMMVRVDQFLNDLLNYNkDNIH--PNIIETL-QEYLKDPEFNPDKVVQKSVAAAGLCAWVINLHRYHQV 3629
Cdd:COG5245  2230 IWFGEQ------QSLRRDDFIRIIGKYP-DEIEfdLEARRFReARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKV 2302
                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3630 FLIVGPKQQALQDSHQELLEARERLQYLKAKINNLEAKLAEIQAEFENAVGEKQRCQREADKTAFTIDLAHRLVNGLANE 3709
Cdd:COG5245  2303 LEVKIPLREEEKRIDGEAFLVEDRLTLGKGLSSDLMTFKLRRRSYYSLDILRVHGKIADMDTVHKDVLRSIFVSEILINE 2382
                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3710 NVRWKESVQSLLAKIGTLPGDILLISSFLSYVGCFTRRYREELQHKMwlpnFRKIDPHIPHTEGV-----DTLALFSDDA 3784
Cdd:COG5245  2383 DSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIGTLGFLCRAIEFGMS----FIRISKEFRDKEIRrrqfiTEGVQKIEDF 2458
                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3785 QIAAWNNEglpmdrMSTENATILQYS-TRWPLMIDPQLQGIKWIKNRFGTDLVVL-RLRQKGFLEALEKSISQGDTVLIe 3862
Cdd:COG5245  2459 KEEACSTD------YGLENSRIRKDLqDLTAVLNDPSSKIVTSQRQMYDEKKAILgSFREMEFAFGLSQARREGSDKII- 2531
                        2170      2180      2190      2200      2210      2220      2230      2240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3863 QIEESMDTVLEPLLSRALIKKGRYLR--IGDKEIEFHASFRLILHTKMANPHYKPEMQAQTTLINFTVTPDGLEEQLLAE 3940
Cdd:COG5245  2532 GDAEALDEEIGRLIKEEFKSNLSEVKvmINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQLIQVMFVSKVLGCETEIPDA 2611
                        2250      2260      2270      2280      2290      2300      2310      2320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3941 VVKIERPDLEQMKTEVTVQQNKFKISLKALEDELLARLASSGENVLDDHALVINLENTKRTVDEIEAKVREARVTTLQID 4020
Cdd:COG5245  2612 LEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKSRKEIEEEESESMEIEDRID 2691
                        2330      2340      2350      2360      2370      2380      2390      2400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4021 DTRNIYRSAAKRAAILYFVLTDLSRINPIYKFSLKSFMNVFRQAIAMaaesknyekrvlhlvESITLQTYRYTLRG---- 4096
Cdd:COG5245  2692 ALKSEYNASVKRLESIRVEIAMFDEKALMYNKSICELSSEFEKWRRM---------------KSKYLCAIRYMLMSsewi 2756
                        2410      2420      2430      2440      2450      2460      2470      2480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4097 LFEADKLTF-TSHMTLRILIAAEQVAKdetdfLLRFphdpttlspldfvgrsawgGIKSLTLIE-HFYGIDkdmenytkr 4174
Cdd:COG5245  2757 LDHEDRSGFiHRLDVSFLLRTKRFVST-----LLED-------------------KNYRQVLSScSLYGND--------- 2803
                        2490      2500      2510      2520      2530      2540      2550      2560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4175 wrkfMASDTPEReqFPGE----WKHRTPLQKLCIIRSlrpdrMTYAMRQFVEQTMGRSYAEIQTPPFGAIFQELNAATpa 4250
Cdd:COG5245  2804 ----VISHSCDR--FDRDvyraLKHQMDNRTHSTILT-----SNSKTNPYKEYTYNDSWAEAFEVEDSGDLYKFEEGL-- 2870
                        2570      2580      2590      2600      2610      2620      2630      2640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4251 ffilspgvdpIRDVERYGQRQGFHS---ESDTLVNiSLGQGQELLAEQAIIGALESGQQWVILQNIHLVVNWLPT-LEKL 4326
Cdd:COG5245  2871 ----------LELIVGHAPLIYAHKkslENERNVD-RLGSKENEVYAVLNSLFSRKEKSWFEVYNISLSFGWFKRyVEDV 2939
                        2650      2660      2670      2680      2690      2700      2710      2720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4327 IERIVLQSESKGESNF-RLFISAE--PAPDPQ------YHVIPqGILESSLKVVNEPPSGMAANLHKAWDNFsqdaletc 4397
Cdd:COG5245  2940 VYPIKASRVCGKVKNMwTSMVDADmlPIQLLIaidsfvSSTYP-ETGCGYADLVEIDRYPFDYTLVIACDDA-------- 3010
                        2730      2740      2750      2760      2770      2780      2790      2800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4398 tqeaefksilFALCYFHAVAGERRKFGPQGWNKVYPFNIGDLTISSNVLHN--YLEGSNRIPWEDLRYLFGEIMYGGHIT 4475
Cdd:COG5245  3011 ----------FYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKNilFLNHLNARKWGNNRDLIFTIVYGKKHS 3080
                        2810      2820      2830      2840
                  ....*....|....*....|....*....|....*....|
gi 221459933 4476 DDWDRRLCQTYLEELLQQdliDGDFELCPGFPAP-PNLDF 4514
Cdd:COG5245  3081 LMEDSKVVDKYCRGYGAH---ETSSQILASVPGGdPELVK 3117
DHC_N1 pfam08385
Dynein heavy chain, N-terminal region 1; Dynein heavy chains interact with other heavy chains ...
279-903 1.10e-89

Dynein heavy chain, N-terminal region 1; Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit. The region featured in this family includes the sequences implicated in mediating these interactions. It is thought to be flexible and not to adopt a rigid conformation.


:

Pssm-ID: 462457  Cd Length: 560  Bit Score: 305.66  E-value: 1.10e-89
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   279 NLLEEMFINWTTQMHDIVlersecqplgsTTQSAGHQPkyitlvsLPAQEIGFWTNRKLNLQNIYEQLRESTHKTLAQIL 358
Cdd:pfam08385    2 HALESVVIKWTKQIQDVL-----------KEDSQGRNP-------GPLAEIEFWKSREANLSSIYEQLKSPEVKKVLEIL 63
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   359 ERIESVYYEPYATAFRKLVAAWLEAQDVSLWLQPL------LRQTAAFNSVQfsnghDLVAPLVHIVHLVWSNARYYRST 432
Cdd:pfam08385   64 EAAKSSYLPAFKALDTELTDALNEAKDNVKYLKTLerpfedLEELTDPPEII-----EAIPPLMNTIRLIWSISRYYNTS 138
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   433 QRMSVLLRCICNMLVHRAAEDLELQLLFQGDADEGLLKINRTIAVLELFKQRMLDYKERYAGSQvllpalsegaaavass 512
Cdd:pfam08385  139 ERMTVLLEKISNQLIEQCKKYLSPEGIFDGDVEEALEKLQECIELLEAWKEEYKKTREKLEESP---------------- 202
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   513 pspddQQQLWRFCHEDVFGQtLDGFSLQLLELRQVFEAAVQFQQLEKleVGGLRGKILTERVREIFGEFKVLFEQWSNVD 592
Cdd:pfam08385  203 -----RERPWDFSERYIFGR-FDAFLERLEKILELFETIEQFSKLEK--IGGTKGPELEGVIEEILEEFQEAYKVFKSKT 274
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   593 IDLTATVASKWKcfrREQTLFFSRMQLLEQKLATVLLQAFEQCHSWMHLLRLTLMFGSLLQREAVRPELARVLPHILFIY 672
Cdd:pfam08385  275 YDILDVSNEGFD---DDYEEFKERIKDLERRLQAFIDQAFDDARSTESAFKLLRIFEFLLERPIIRGALEEKYTDLLQMF 351
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   673 DTEMEQLEDSvgevllgYEIRGLAALPLANNFPPIANAMMWleqhiSRcdefgakelsQLVEQLLKEKSELQTLPIQWNS 752
Cdd:pfam08385  352 KKELDAVKKI-------FDKQKYNPSPIAKNMPPVAGAIIW-----AR----------QLFRRIQEPMKRFKEELGLLKH 409
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   753 LLSRR-----NILTTKLSNLQMKIWISWHECVDKLIIQGLDESVLSRSQD-LSQLHLNFSQVLFTLLKETKYLLALQatg 826
Cdd:pfam08385  410 AEGKKvikkyNELAKKLDEYERLIYEAWLKEVEEASEGNLKRPLLVRHPEtGKLLSVNFDPQLLALLREVKYLQKLG--- 486
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 221459933   827 slsgdlFQLPEPLLTLYGHRDAYWERRIRLIKIGEFYNGIRSGeCAAAELQLIRNDLASIDEHVEVACQQLTWRNYN 903
Cdd:pfam08385  487 ------FEIPESALNIALKEERLRPYAESLELLVRWYNKIRST-LLPVERPLLAPHLKDIDEKLEPGLTTLTWNSLG 556
 
Name Accession Description Interval E-value
AAA_6 pfam12774
Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic ...
2095-2421 0e+00

Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities: AAA1-AAA6). This is the first site (out of four nucleotide binding sites in the dynein motor) where the movement depends on ATP hydrolysis. When this site is nucleotide free or bound to ADP, the microtubule binding domain (MTBD) binds to the microtubule and the linker adopts the straight post-power-stroke conformation. Upon ATP binding and hydrolysis, the MTBD detaches from the microtubule and the linker is primed into the pre-power-stroke conformation. Dynein's AAA+ domains are each divided into an alpha/beta large subdomain designated with an L and and alpha small subdomains designated with an S. This is the AAA1 large (AAA1L) subdomain with the accompanying small subdomain (AAA1S). AAA1L, AAA1S and AAA2L enclose ADP.vanadate (ADP.Vi, ATP-hydrolysis transition state analogue). The AAA1L sensor-I loop, which varies in position depending on dynein's nucleotide state, swings in to contact AAA2L forming the important AAA1 nucleotide-binding site.


Pssm-ID: 463697 [Multi-domain]  Cd Length: 327  Bit Score: 637.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2095 YAYEYLGNTSRLVITPLTDRCYITLTQSLRLRLAGATAGPAGTGKTETTKDLGRALGVMVYVFNCSEQMDYKSCGNIYKG 2174
Cdd:pfam12774    1 YGYEYLGNSGRLVITPLTDRCYLTLTQALHLHLGGAPAGPAGTGKTETVKDLAKALAKQVVVFNCSDGLDYKSMGRIFKG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2175 LAQTGAWGCFDEFNRICVEVLSVVAVQVKTIQEAIKMHKTQFIFMGERISLEPSVGIFITMNPGYAGRTELPENLKTLFR 2254
Cdd:pfam12774   81 LAQCGAWGCFDEFNRIDIEVLSVVAQQILTIQQALAANLKTFVFEGSEIKLNPSCGIFITMNPGYAGRTELPDNLKALFR 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2255 PCAMIVPDFALICEIMLMAEGFQDARLLARKFITLYTLCKELLSKQDHYDWGLRAIKSVLVVAGTLKRDDHSRPEDQVLM 2334
Cdd:pfam12774  161 PVAMMVPDYALIAEIMLFSEGFSDAKVLAKKLVTLYKLCSEQLSKQDHYDFGLRALKSVLVTAGSLKRSNPNLNEDVLLL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2335 RALRDFNIPKIVTEDVPIFMGLIGDLFPALDVPRKRVFEFEKTIRRAVNEIKLQPEEGFLMKVVQLQELLDVRHSVFIVG 2414
Cdd:pfam12774  241 RALRDMNLPKLVADDVPLFLGLISDLFPGVELPPSDYGELEEAIEEVCKELGLQPHDAFILKVIQLYETMLVRHGVMLVG 320

                   ....*..
gi 221459933  2415 NAGTGKT 2421
Cdd:pfam12774  321 PTGSGKT 327
MT pfam12777
Microtubule-binding stalk of dynein motor; the 380 kDa motor unit of dynein belongs to the AAA ...
3419-3759 2.67e-143

Microtubule-binding stalk of dynein motor; the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This family is the region between D4 and D5 and is the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component.


Pssm-ID: 463699 [Multi-domain]  Cd Length: 344  Bit Score: 451.45  E-value: 2.67e-143
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3419 RLQSGMSKLAECARQVDTLKHQLAIQEVQLAAKNAAADKLIVIVSAESEKVKRERYIASEEEKRVRIIEEDVSIKTKMCE 3498
Cdd:pfam12777    2 RLENGLLKLHSTAAQVDDLKAKLAAQEAELKQKNEDADKLIQVVGIEADKVSKEKAIADEEEQKVAVIMKEVKEKQKACE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3499 EDLRQAEPALVAAQAALNTLNKNNLTELKSFGSPPKAVVNVCAAVMVLLASNGKIPRDRSWKASKLMMVRVDQFLNDLLN 3578
Cdd:pfam12777   82 EDLAKAEPALLAAQAALDTLNKNNLTELKSFGSPPDAVSNVSAAVMILMAPGGKIPKDKSWKAAKIMMAKVDGFLDSLIK 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3579 YNKDNIHPNIIETLQEYLKDPEFNPDKVVQKSVAAAGLCAWVINLHRYHQVFLIVGPKQQALQDSHQELLEARERLQYLK 3658
Cdd:pfam12777  162 FDKEHIHEACLKAFKPYLGDPEFDPEFIASKSTAAAGLCSWCINIVRFYEVFCDVAPKRQALEEANADLAAAQEKLAAIK 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3659 AKINNLEAKLAEIQAEFENAVGEKQRCQREADKTAFTIDLAHRLVNGLANENVRWKESVQSLLAKIGTLPGDILLISSFL 3738
Cdd:pfam12777  242 AKIAELNANLAKLTAAFEKATADKIKCQQEADATARTILLANRLVGGLASENIRWADAVENFKQQERTLCGDILLISAFI 321
                          330       340
                   ....*....|....*....|.
gi 221459933  3739 SYVGCFTRRYREELQHKMWLP 3759
Cdd:pfam12777  322 SYLGFFTKKYRNELLDKFWIP 342
DHC_N2 pfam08393
Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic ...
1532-1943 3.09e-126

Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. This region is found C-terminal to the dynein heavy chain N-terminal region 1 (pfam08385) in many members of this family. No functions seem to have been attributed specifically to this region.


Pssm-ID: 462462 [Multi-domain]  Cd Length: 402  Bit Score: 404.72  E-value: 3.09e-126
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1532 LQFCEVELRRVKQLWDFVRVIESCIVAWHATPWLLIDTDDMEHECKKFTRDLRTLDKCIREWAPYVHIVGVLRELVASLR 1611
Cdd:pfam08393    1 LEEIKKELEPLKKLWDLVSEWQESLEEWKNGPFSDLDVEELEEELEEFLKELKKLPKELRDWDVAEELKKKIDDFKKSLP 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1612 AITELQNPAITERHWMELMQLTKLSYKCNKSTRLAQLLTLQLQH-HEEDIKNTVDRAIKEMTVTKVLDEIKATWAHLEFE 1690
Cdd:pfam08393   81 LIEDLRNPALRERHWKQLSEILGFDFDPLSEFFTLGDLLDLNLHkYEEEIEEISEQASKEYSIEKALKKIEEEWKTMEFE 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1691 LEQHHTRpHIQLLKVSEELIETLDDNQMQLQNISTSKHIEYLLDKLTHWQKVLGGIDTLIVNWFEVQRKWIYLECIFIGS 1770
Cdd:pfam08393  161 LVPYKDT-GTFILKGWDEIQELLDDHLVKLQSMKSSPYVKPFEEEVSEWEKKLSLLQEILDEWLKVQRKWLYLEPIFSSE 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1771 aDIRAQLPADAANFERIDEDFTALLAKVQEVRVVMQVVLRhDDVLAQLLQLQHRLAVCEKALNDYLETKRLAFPRFYFIS 1850
Cdd:pfam08393  240 -DIRKQLPEEAKRFQNVDKEWKKIMKKAVKDPNVLEACNI-PGLLEKLEELNELLEKIQKSLNEYLEKKRLAFPRFYFLS 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1851 AADLLDILSNGNNPQVIDRHLIKLFDSILRLQYETNTpNALGMHSKENdEYVPFVSfdpdqpAFIVCGGRVELWLRAIIQ 1930
Cdd:pfam08393  318 NDELLEILSQTKDPTRVQPHLKKCFEGIASLEFDENK-EITGMISKEG-EVVPFSK------PPVEAKGNVEEWLNELEE 389
                          410
                   ....*....|...
gi 221459933  1931 QMRSTLHELFRRA 1943
Cdd:pfam08393  390 EMRETLRDLLKEA 402
Dynein_C pfam18199
Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein ...
4545-4840 2.01e-112

Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading over the AAA1, AAA5 and AAA6 domain.


Pssm-ID: 465677  Cd Length: 301  Bit Score: 360.78  E-value: 2.01e-112
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4545 TTASEQLLRTIFELQPRESELSSHCGAPREELVKIMIDDFLDKLQDEFNLQALLNR--VERKTPFVVVALQECERMNALI 4622
Cdd:pfam18199    1 TNETNELLSTLLSLQPRSDSGGGGGGSSREEIVLELAKDILEKLPEPFDIEEAEEKypVGYEDPLNTVLLQEIERFNKLL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4623 REIKRSLRELMLGLRGELTITQEMERLDHAIFYDHVPAAWARLAYPSMLGLQSWFADLLHRIKELAGWLNDFKLPCAIWL 4702
Cdd:pfam18199   81 KVIRRSLQDLQKAIKGLVVMSSELEELANSLLNGKVPESWAKKSYPSLKPLGSWIRDLLERLKQLQDWLDDEGPPKVFWL 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4703 GGLFNPQSFLTAIMQESARKHDLPLDRMLISCDVTKK-QKDDVTLPPMEGAFVHDLYMDGASWDCQLNSIVALRPKEMLC 4781
Cdd:pfam18199  161 SGFFFPQAFLTAVLQNYARKNGWPIDKLSFDFEVTKKvSPEEVTEPPEDGVYVHGLFLEGARWDRKNGCLVESEPKELFS 240
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221459933  4782 AMPVIYIKSIVQEKQELQR-VYECPLYKTRSRGNT-YVWTFNLKTRERPSRWILGGVALLL 4840
Cdd:pfam18199  241 PLPVIHLKPVESDKKKLDEnTYECPVYKTSERHSTnFVFSVDLPTDKPPDHWILRGVALLL 301
DYN1 COG5245
Dynein, heavy chain [Cytoskeleton];
1759-4514 1.94e-108

Dynein, heavy chain [Cytoskeleton];


Pssm-ID: 227570 [Multi-domain]  Cd Length: 3164  Bit Score: 391.66  E-value: 1.94e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1759 KWIYLECIFIGSADIRAQLPADAANFERIDEDFTALLAKVQEVRVVMQVVlrHDDVLAQLLQLQHRLAVCEKALNDYLET 1838
Cdd:COG5245   626 RRLDEYLMMMSLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVSGCEAINTI--LEDVGDDLDLFYKEMDQVFMSIEKVLGL 703
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1839 KRLAFPRFyfISAADLLDILSNGNNPQVIDRHLIKLFDSIlrlqyETNTPNALGMHSKEndeyvpfvSFDPDQPAFIvcg 1918
Cdd:COG5245   704 RWREVERA--SEVEELMDRVRELENRVYSYRFFVKKIAKE-----EMKTVFSSRIQKKE--------PFSLDSEAYV--- 765
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1919 GRVELWLRAIIQQ-MRSTLHELFRRALRVFGE----KPRELWLYDWPAQVALCCSQIsWTADVNRsfgCMEEGYEGVMKE 1993
Cdd:COG5245   766 GFFRLYEKSIVIRgINRSMGRVLSQYLESVQEaleiEDGSFFVSRHRVRDGGLEKGR-GCDAWEN---CFDPPLSEYFRI 841
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1994 LHKRQIAQLNALINLLLGELSPGDRQKImtictidvHSRDVVG--KIIASKVDNSLAFQWQSQLRHRWDDDQAGSSSGRA 2071
Cdd:COG5245   842 LEKIFPSEEGYFFDEVLKRLDPGHEIKS--------RIEEIIRmvTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSYR 913
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2072 StaiscgggdedcfanicdaefRYAYEYLGNTSRLVITPLTDRCYITLTQSLRLRLAGAtagpAGTGKTETTKDLGRALG 2151
Cdd:COG5245   914 S---------------------AEMFAKNTIPFFVFEHSMDTSQHQKLFEAVCDEVCRF----VDTENSRVYGMLVAGKG 968
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2152 VMVyvfncsEQMDYKScgNIYKGLAQTGAWGcFDEFNRIcVEVLSVVAVQVKTIQEAIKMHKTQFIFMGERISLEPSVGI 2231
Cdd:COG5245   969 RIY------DGTEPRS--RIEAGPICEEERG-TEESALL-DEISRTILVDEYLNSDEFRMLEELNSAVVEHGLKSPSTPV 1038
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2232 FITMNPgyagRTELPENLKTLFRPCAMIVPdFALICEIMlmaegfqdaRLLARKFITLYTLCKELLSKQDHYDWglRAIK 2311
Cdd:COG5245  1039 EMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSRR---------ESLDREIGAFNNEVDGIAREEDELMF--YPMF 1102
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2312 SVLvvagtlkRDDHSRPED--QVLMRALRDFNIPkivtedvpifmgLIGDLFpaldVPRKRVFEFEKTIRRAVNEIKLQP 2389
Cdd:COG5245  1103 KSL-------KAKHRMLEEktEYLNKILSITGLP------------LISDTL----RERIDTLDAEWDSFCRISESLKKY 1159
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2390 E----EGFLM-KVVQLQELLDVRHSVFIVGNAGTGKTKIWQTlretyriqklkpVC----HVLNPKALsnDELFgivnPT 2460
Cdd:COG5245  1160 EsqqvSGLDVaQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTD------------ACdylwHVKSPYVK--KKYF----DA 1221
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2461 TREWKdGLFSSIMREQANMPPGNPK-WIVLDGdidpmWIESLNTLMDDNKILTLASNERislkremRLLFEvgHLkAATP 2539
Cdd:COG5245  1222 DMELR-QFFLMFNREDMEARLADSKmEYEVER-----YVEKTKAEVSSLKLELSSVGEG-------QVVVS--NL-GSIG 1285
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2540 ATVSRAGILYINPQDLGwspyVSSWLETRVDMIERGILNALfeKYFPCLMQRQRdfrritpITDMAMIQMTCHLLECLLD 2619
Cdd:COG5245  1286 DKVGRCLVEYDSISRLS----TKGVFLDELGDTKRYLDECL--DFFSCFEEVQK-------EIDELSMVFCADALRFSAD 1352
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2620 SDEGNADGRGRGSATGGAANPHSLHHGE-----LSHEAMVMALETIFVYATVWsfgsALSQDVIIDWHREFHKWWIGEF- 2693
Cdd:COG5245  1353 LYHIVKERRFSGVLAGSDASESLGGKSIelaaiLEHKDLIVEMKRGINDVLKL----RIFGDKCRESTPRFYLISDGDLi 1428
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2694 ---KDIKLPSQGTVFDYQLNVQTlkfQPWSELAAhQSLEGqidSETPL-QNVLISTAETIRLAYFLKLLIDRNLACMLVG 2769
Cdd:COG5245  1429 kdlNERSDYEEMLIMMFNISAVI---TNNGSIAG-FELRG---ERVMLrKEVVIPTSDTGFVDSFSNEALNTLRSYIYCG 1501
                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2770 NSGCGKGAIfrqLFGQYANDQELlevavsaatagdsshqqqsgnpagAVVVRRKASSSATPLLTTVQATHFNFYTSSEIF 2849
Cdd:COG5245  1502 PPGSGKEML---MCPSLRSELIT------------------------EVKYFNFSTCTMTPSKLSVLERETEYYPNTGVV 1554
                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2850 qKMLDRPLEKKsgrcyapsgpkrrLIYFVNDLNMPEVDAYGTVQPHTIMRQFMDYRQWYDRQRLQLKDIRHCQFAACMNP 2929
Cdd:COG5245  1555 -RLYPKPVVKD-------------LVLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNP 1620
                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2930 --TAGSFTIDPRLQRHFCVFSVAPPGEDTLHHIYGSIL-SSHLESPsqgftkEIRSIGSLLVRVGIALHRRVEYAFlPTA 3006
Cdd:COG5245  1621 gtDEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLmGSYLCFD------EFNRLSEETMSASVELYLSSKDKT-KFF 1693
                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3007 LKFHYLFNLRDLTGIYQGLMNSVGAPASAGGGgasgfggticsrpsELMRLYVHEAFRVYHDRLVDPYDIKSFKSSIRDI 3086
Cdd:COG5245  1694 LQMNYGYKPRELTRSLRAIFGYAETRIDTPDV--------------SLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDF 1759
                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3087 FKKDFEDFDEDFVFAEPLIYS---HFAQSLVDQKymplkswdSLYQLLIEAQASYNEVVGYMNLVLFEDAMIHVCRINRI 3163
Cdd:COG5245  1760 GLRAIREMIAGHIGEAEITFSmilFFGMACLLKK--------DLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRG 1831
                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3164 LESPRGNALLIGVGGSGKQTLARLAAFISSLNVSQIQIKRGFGLLDMREEIGNLYMKVGLKNLASVFLISDAQIPDESIL 3243
Cdd:COG5245  1832 LLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRDELTGDFRDSLKVQDLRRNIHGGRECLFIFESIPVESSFL 1911
                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3244 MLINDLLASGEIPELFNDDQLDTITNGIRNEVK-QSGTLDTKENCWRYFVEKVRRLLKVVLCFSPVGQTLRVRARKFPAI 3322
Cdd:COG5245  1912 EDFNPLLDNNRFLCLFSGNERIRIPENLRFVFEsTSLEKDTEATLTRVFLVYMEENLPVVFSACCSQDTSVLAGIRSPAL 1991
                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3323 ISRTAIDWFHEWPKSAL---------ESVSQKFLNEINGilEPALVPPIGCFMAYVHGTVNQISRIYLQNEKR-YNYTTP 3392
Cdd:COG5245  1992 KNRCFIDFKKLWDTEEMsqyansvetLSRDGGRVFFING--ELGVGKGALISEVFGDDAVVIEGRGFEISMIEgSLGESK 2069
                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3393 KTFLEYIFLYRKLLVDKNGEFAERIARLQSGMSKLAECARQVDTLKHQLAIQEVQLAAKNAAADKLIVIVSAESEKVKRE 3472
Cdd:COG5245  2070 IKFIGGLKVYDARCVIYIEELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKNADDALSGTPGERLEREVK 2149
                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3473 RYIASEEEKRVRIIEEDVSIKTKMCEEDLRQAEPALVAAQAALNTLNKNNLTELKSFGSPPKAVVNVCAAVMVLLASNGK 3552
Cdd:COG5245  2150 SVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAK 2229
                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3553 IPRDRSwkasklMMVRVDQFLNDLLNYNkDNIH--PNIIETL-QEYLKDPEFNPDKVVQKSVAAAGLCAWVINLHRYHQV 3629
Cdd:COG5245  2230 IWFGEQ------QSLRRDDFIRIIGKYP-DEIEfdLEARRFReARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKV 2302
                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3630 FLIVGPKQQALQDSHQELLEARERLQYLKAKINNLEAKLAEIQAEFENAVGEKQRCQREADKTAFTIDLAHRLVNGLANE 3709
Cdd:COG5245  2303 LEVKIPLREEEKRIDGEAFLVEDRLTLGKGLSSDLMTFKLRRRSYYSLDILRVHGKIADMDTVHKDVLRSIFVSEILINE 2382
                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3710 NVRWKESVQSLLAKIGTLPGDILLISSFLSYVGCFTRRYREELQHKMwlpnFRKIDPHIPHTEGV-----DTLALFSDDA 3784
Cdd:COG5245  2383 DSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIGTLGFLCRAIEFGMS----FIRISKEFRDKEIRrrqfiTEGVQKIEDF 2458
                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3785 QIAAWNNEglpmdrMSTENATILQYS-TRWPLMIDPQLQGIKWIKNRFGTDLVVL-RLRQKGFLEALEKSISQGDTVLIe 3862
Cdd:COG5245  2459 KEEACSTD------YGLENSRIRKDLqDLTAVLNDPSSKIVTSQRQMYDEKKAILgSFREMEFAFGLSQARREGSDKII- 2531
                        2170      2180      2190      2200      2210      2220      2230      2240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3863 QIEESMDTVLEPLLSRALIKKGRYLR--IGDKEIEFHASFRLILHTKMANPHYKPEMQAQTTLINFTVTPDGLEEQLLAE 3940
Cdd:COG5245  2532 GDAEALDEEIGRLIKEEFKSNLSEVKvmINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQLIQVMFVSKVLGCETEIPDA 2611
                        2250      2260      2270      2280      2290      2300      2310      2320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3941 VVKIERPDLEQMKTEVTVQQNKFKISLKALEDELLARLASSGENVLDDHALVINLENTKRTVDEIEAKVREARVTTLQID 4020
Cdd:COG5245  2612 LEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKSRKEIEEEESESMEIEDRID 2691
                        2330      2340      2350      2360      2370      2380      2390      2400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4021 DTRNIYRSAAKRAAILYFVLTDLSRINPIYKFSLKSFMNVFRQAIAMaaesknyekrvlhlvESITLQTYRYTLRG---- 4096
Cdd:COG5245  2692 ALKSEYNASVKRLESIRVEIAMFDEKALMYNKSICELSSEFEKWRRM---------------KSKYLCAIRYMLMSsewi 2756
                        2410      2420      2430      2440      2450      2460      2470      2480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4097 LFEADKLTF-TSHMTLRILIAAEQVAKdetdfLLRFphdpttlspldfvgrsawgGIKSLTLIE-HFYGIDkdmenytkr 4174
Cdd:COG5245  2757 LDHEDRSGFiHRLDVSFLLRTKRFVST-----LLED-------------------KNYRQVLSScSLYGND--------- 2803
                        2490      2500      2510      2520      2530      2540      2550      2560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4175 wrkfMASDTPEReqFPGE----WKHRTPLQKLCIIRSlrpdrMTYAMRQFVEQTMGRSYAEIQTPPFGAIFQELNAATpa 4250
Cdd:COG5245  2804 ----VISHSCDR--FDRDvyraLKHQMDNRTHSTILT-----SNSKTNPYKEYTYNDSWAEAFEVEDSGDLYKFEEGL-- 2870
                        2570      2580      2590      2600      2610      2620      2630      2640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4251 ffilspgvdpIRDVERYGQRQGFHS---ESDTLVNiSLGQGQELLAEQAIIGALESGQQWVILQNIHLVVNWLPT-LEKL 4326
Cdd:COG5245  2871 ----------LELIVGHAPLIYAHKkslENERNVD-RLGSKENEVYAVLNSLFSRKEKSWFEVYNISLSFGWFKRyVEDV 2939
                        2650      2660      2670      2680      2690      2700      2710      2720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4327 IERIVLQSESKGESNF-RLFISAE--PAPDPQ------YHVIPqGILESSLKVVNEPPSGMAANLHKAWDNFsqdaletc 4397
Cdd:COG5245  2940 VYPIKASRVCGKVKNMwTSMVDADmlPIQLLIaidsfvSSTYP-ETGCGYADLVEIDRYPFDYTLVIACDDA-------- 3010
                        2730      2740      2750      2760      2770      2780      2790      2800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4398 tqeaefksilFALCYFHAVAGERRKFGPQGWNKVYPFNIGDLTISSNVLHN--YLEGSNRIPWEDLRYLFGEIMYGGHIT 4475
Cdd:COG5245  3011 ----------FYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKNilFLNHLNARKWGNNRDLIFTIVYGKKHS 3080
                        2810      2820      2830      2840
                  ....*....|....*....|....*....|....*....|
gi 221459933 4476 DDWDRRLCQTYLEELLQQdliDGDFELCPGFPAP-PNLDF 4514
Cdd:COG5245  3081 LMEDSKVVDKYCRGYGAH---ETSSQILASVPGGdPELVK 3117
AAA_9 pfam12781
ATP-binding dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. ...
3787-4005 1.71e-104

ATP-binding dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the fifth AAA+ domain subdomain AAA5S. Structural analysis reveal that it is the coiled-coil buttress interface. The relative movement of AAA5S together with the stalk (AAA4S), is coupled to rearrangements in the AAA+ ring. Closure of the AAA1 site and the rigid body movement of AAA2-AAA4 force the AAA4/AAA5 interface to close and the AAA6L subdomain to rotate towards the ring centre. The AAA5S subdomain rotates as a unit together with AAA6L, and this movement pulls the buttress relative to the stalk.


Pssm-ID: 463702 [Multi-domain]  Cd Length: 222  Bit Score: 334.41  E-value: 1.71e-104
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3787 AAWNNEGLPMDRMSTENATILQYSTRWPLMIDPQLQGIKWIKNRFG-TDLVVLRLRQKGFLEALEKSISQGDTVLIEQIE 3865
Cdd:pfam12781    1 REWNIQGLPNDELSIENAIIVTNSRRWPLLIDPQGQANKWIKNMEKdNGLKVTSFTDKNFLKTLENAIRFGKPLLIEDVG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3866 ESMDTVLEPLLSRALIKKGR--YLRIGDKEIEFHASFRLILHTKMANPHYKPEMQAQTTLINFTVTPDGLEEQLLAEVVK 3943
Cdd:pfam12781   81 EELDPILDPVLLKEIFKGGGrkVIKLGDKEVDYNPNFRLYLTTKLPNPHYPPEVAAKVTLINFTVTRSGLEDQLLGIVVK 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 221459933  3944 IERPDLEQMKTEVTVQQNKFKISLKALEDELLARLASSGENVLDDHALVINLENTKRTVDEI 4005
Cdd:pfam12781  161 KERPDLEEQRNELIKEIAENKKQLKELEDKLLELLSSSEGNILDDEELIETLETSKKTSEEI 222
DHC_N1 pfam08385
Dynein heavy chain, N-terminal region 1; Dynein heavy chains interact with other heavy chains ...
279-903 1.10e-89

Dynein heavy chain, N-terminal region 1; Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit. The region featured in this family includes the sequences implicated in mediating these interactions. It is thought to be flexible and not to adopt a rigid conformation.


Pssm-ID: 462457  Cd Length: 560  Bit Score: 305.66  E-value: 1.10e-89
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   279 NLLEEMFINWTTQMHDIVlersecqplgsTTQSAGHQPkyitlvsLPAQEIGFWTNRKLNLQNIYEQLRESTHKTLAQIL 358
Cdd:pfam08385    2 HALESVVIKWTKQIQDVL-----------KEDSQGRNP-------GPLAEIEFWKSREANLSSIYEQLKSPEVKKVLEIL 63
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   359 ERIESVYYEPYATAFRKLVAAWLEAQDVSLWLQPL------LRQTAAFNSVQfsnghDLVAPLVHIVHLVWSNARYYRST 432
Cdd:pfam08385   64 EAAKSSYLPAFKALDTELTDALNEAKDNVKYLKTLerpfedLEELTDPPEII-----EAIPPLMNTIRLIWSISRYYNTS 138
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   433 QRMSVLLRCICNMLVHRAAEDLELQLLFQGDADEGLLKINRTIAVLELFKQRMLDYKERYAGSQvllpalsegaaavass 512
Cdd:pfam08385  139 ERMTVLLEKISNQLIEQCKKYLSPEGIFDGDVEEALEKLQECIELLEAWKEEYKKTREKLEESP---------------- 202
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   513 pspddQQQLWRFCHEDVFGQtLDGFSLQLLELRQVFEAAVQFQQLEKleVGGLRGKILTERVREIFGEFKVLFEQWSNVD 592
Cdd:pfam08385  203 -----RERPWDFSERYIFGR-FDAFLERLEKILELFETIEQFSKLEK--IGGTKGPELEGVIEEILEEFQEAYKVFKSKT 274
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   593 IDLTATVASKWKcfrREQTLFFSRMQLLEQKLATVLLQAFEQCHSWMHLLRLTLMFGSLLQREAVRPELARVLPHILFIY 672
Cdd:pfam08385  275 YDILDVSNEGFD---DDYEEFKERIKDLERRLQAFIDQAFDDARSTESAFKLLRIFEFLLERPIIRGALEEKYTDLLQMF 351
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   673 DTEMEQLEDSvgevllgYEIRGLAALPLANNFPPIANAMMWleqhiSRcdefgakelsQLVEQLLKEKSELQTLPIQWNS 752
Cdd:pfam08385  352 KKELDAVKKI-------FDKQKYNPSPIAKNMPPVAGAIIW-----AR----------QLFRRIQEPMKRFKEELGLLKH 409
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   753 LLSRR-----NILTTKLSNLQMKIWISWHECVDKLIIQGLDESVLSRSQD-LSQLHLNFSQVLFTLLKETKYLLALQatg 826
Cdd:pfam08385  410 AEGKKvikkyNELAKKLDEYERLIYEAWLKEVEEASEGNLKRPLLVRHPEtGKLLSVNFDPQLLALLREVKYLQKLG--- 486
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 221459933   827 slsgdlFQLPEPLLTLYGHRDAYWERRIRLIKIGEFYNGIRSGeCAAAELQLIRNDLASIDEHVEVACQQLTWRNYN 903
Cdd:pfam08385  487 ------FEIPESALNIALKEERLRPYAESLELLVRWYNKIRST-LLPVERPLLAPHLKDIDEKLEPGLTTLTWNSLG 556
PRK14140 PRK14140
heat shock protein GrpE; Provisional
3641-3693 3.71e-03

heat shock protein GrpE; Provisional


Pssm-ID: 237622 [Multi-domain]  Cd Length: 191  Bit Score: 41.91  E-value: 3.71e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 221459933 3641 QDSHQELLEARERLQYLKAKINNLEAKLAEIQAEFENavgEKQRCQREADKTA 3693
Cdd:PRK14140   33 ESEAELLDEEQAKIAELEAKLDELEERYLRLQADFEN---YKRRIQKENEAAE 82
 
Name Accession Description Interval E-value
AAA_6 pfam12774
Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic ...
2095-2421 0e+00

Hydrolytic ATP binding site of dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities: AAA1-AAA6). This is the first site (out of four nucleotide binding sites in the dynein motor) where the movement depends on ATP hydrolysis. When this site is nucleotide free or bound to ADP, the microtubule binding domain (MTBD) binds to the microtubule and the linker adopts the straight post-power-stroke conformation. Upon ATP binding and hydrolysis, the MTBD detaches from the microtubule and the linker is primed into the pre-power-stroke conformation. Dynein's AAA+ domains are each divided into an alpha/beta large subdomain designated with an L and and alpha small subdomains designated with an S. This is the AAA1 large (AAA1L) subdomain with the accompanying small subdomain (AAA1S). AAA1L, AAA1S and AAA2L enclose ADP.vanadate (ADP.Vi, ATP-hydrolysis transition state analogue). The AAA1L sensor-I loop, which varies in position depending on dynein's nucleotide state, swings in to contact AAA2L forming the important AAA1 nucleotide-binding site.


Pssm-ID: 463697 [Multi-domain]  Cd Length: 327  Bit Score: 637.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2095 YAYEYLGNTSRLVITPLTDRCYITLTQSLRLRLAGATAGPAGTGKTETTKDLGRALGVMVYVFNCSEQMDYKSCGNIYKG 2174
Cdd:pfam12774    1 YGYEYLGNSGRLVITPLTDRCYLTLTQALHLHLGGAPAGPAGTGKTETVKDLAKALAKQVVVFNCSDGLDYKSMGRIFKG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2175 LAQTGAWGCFDEFNRICVEVLSVVAVQVKTIQEAIKMHKTQFIFMGERISLEPSVGIFITMNPGYAGRTELPENLKTLFR 2254
Cdd:pfam12774   81 LAQCGAWGCFDEFNRIDIEVLSVVAQQILTIQQALAANLKTFVFEGSEIKLNPSCGIFITMNPGYAGRTELPDNLKALFR 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2255 PCAMIVPDFALICEIMLMAEGFQDARLLARKFITLYTLCKELLSKQDHYDWGLRAIKSVLVVAGTLKRDDHSRPEDQVLM 2334
Cdd:pfam12774  161 PVAMMVPDYALIAEIMLFSEGFSDAKVLAKKLVTLYKLCSEQLSKQDHYDFGLRALKSVLVTAGSLKRSNPNLNEDVLLL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2335 RALRDFNIPKIVTEDVPIFMGLIGDLFPALDVPRKRVFEFEKTIRRAVNEIKLQPEEGFLMKVVQLQELLDVRHSVFIVG 2414
Cdd:pfam12774  241 RALRDMNLPKLVADDVPLFLGLISDLFPGVELPPSDYGELEEAIEEVCKELGLQPHDAFILKVIQLYETMLVRHGVMLVG 320

                   ....*..
gi 221459933  2415 NAGTGKT 2421
Cdd:pfam12774  321 PTGSGKT 327
MT pfam12777
Microtubule-binding stalk of dynein motor; the 380 kDa motor unit of dynein belongs to the AAA ...
3419-3759 2.67e-143

Microtubule-binding stalk of dynein motor; the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This family is the region between D4 and D5 and is the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component.


Pssm-ID: 463699 [Multi-domain]  Cd Length: 344  Bit Score: 451.45  E-value: 2.67e-143
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3419 RLQSGMSKLAECARQVDTLKHQLAIQEVQLAAKNAAADKLIVIVSAESEKVKRERYIASEEEKRVRIIEEDVSIKTKMCE 3498
Cdd:pfam12777    2 RLENGLLKLHSTAAQVDDLKAKLAAQEAELKQKNEDADKLIQVVGIEADKVSKEKAIADEEEQKVAVIMKEVKEKQKACE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3499 EDLRQAEPALVAAQAALNTLNKNNLTELKSFGSPPKAVVNVCAAVMVLLASNGKIPRDRSWKASKLMMVRVDQFLNDLLN 3578
Cdd:pfam12777   82 EDLAKAEPALLAAQAALDTLNKNNLTELKSFGSPPDAVSNVSAAVMILMAPGGKIPKDKSWKAAKIMMAKVDGFLDSLIK 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3579 YNKDNIHPNIIETLQEYLKDPEFNPDKVVQKSVAAAGLCAWVINLHRYHQVFLIVGPKQQALQDSHQELLEARERLQYLK 3658
Cdd:pfam12777  162 FDKEHIHEACLKAFKPYLGDPEFDPEFIASKSTAAAGLCSWCINIVRFYEVFCDVAPKRQALEEANADLAAAQEKLAAIK 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3659 AKINNLEAKLAEIQAEFENAVGEKQRCQREADKTAFTIDLAHRLVNGLANENVRWKESVQSLLAKIGTLPGDILLISSFL 3738
Cdd:pfam12777  242 AKIAELNANLAKLTAAFEKATADKIKCQQEADATARTILLANRLVGGLASENIRWADAVENFKQQERTLCGDILLISAFI 321
                          330       340
                   ....*....|....*....|.
gi 221459933  3739 SYVGCFTRRYREELQHKMWLP 3759
Cdd:pfam12777  322 SYLGFFTKKYRNELLDKFWIP 342
DHC_N2 pfam08393
Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic ...
1532-1943 3.09e-126

Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. This region is found C-terminal to the dynein heavy chain N-terminal region 1 (pfam08385) in many members of this family. No functions seem to have been attributed specifically to this region.


Pssm-ID: 462462 [Multi-domain]  Cd Length: 402  Bit Score: 404.72  E-value: 3.09e-126
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1532 LQFCEVELRRVKQLWDFVRVIESCIVAWHATPWLLIDTDDMEHECKKFTRDLRTLDKCIREWAPYVHIVGVLRELVASLR 1611
Cdd:pfam08393    1 LEEIKKELEPLKKLWDLVSEWQESLEEWKNGPFSDLDVEELEEELEEFLKELKKLPKELRDWDVAEELKKKIDDFKKSLP 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1612 AITELQNPAITERHWMELMQLTKLSYKCNKSTRLAQLLTLQLQH-HEEDIKNTVDRAIKEMTVTKVLDEIKATWAHLEFE 1690
Cdd:pfam08393   81 LIEDLRNPALRERHWKQLSEILGFDFDPLSEFFTLGDLLDLNLHkYEEEIEEISEQASKEYSIEKALKKIEEEWKTMEFE 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1691 LEQHHTRpHIQLLKVSEELIETLDDNQMQLQNISTSKHIEYLLDKLTHWQKVLGGIDTLIVNWFEVQRKWIYLECIFIGS 1770
Cdd:pfam08393  161 LVPYKDT-GTFILKGWDEIQELLDDHLVKLQSMKSSPYVKPFEEEVSEWEKKLSLLQEILDEWLKVQRKWLYLEPIFSSE 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1771 aDIRAQLPADAANFERIDEDFTALLAKVQEVRVVMQVVLRhDDVLAQLLQLQHRLAVCEKALNDYLETKRLAFPRFYFIS 1850
Cdd:pfam08393  240 -DIRKQLPEEAKRFQNVDKEWKKIMKKAVKDPNVLEACNI-PGLLEKLEELNELLEKIQKSLNEYLEKKRLAFPRFYFLS 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  1851 AADLLDILSNGNNPQVIDRHLIKLFDSILRLQYETNTpNALGMHSKENdEYVPFVSfdpdqpAFIVCGGRVELWLRAIIQ 1930
Cdd:pfam08393  318 NDELLEILSQTKDPTRVQPHLKKCFEGIASLEFDENK-EITGMISKEG-EVVPFSK------PPVEAKGNVEEWLNELEE 389
                          410
                   ....*....|...
gi 221459933  1931 QMRSTLHELFRRA 1943
Cdd:pfam08393  390 EMRETLRDLLKEA 402
Dynein_C pfam18199
Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein ...
4545-4840 2.01e-112

Dynein heavy chain C-terminal domain; This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading over the AAA1, AAA5 and AAA6 domain.


Pssm-ID: 465677  Cd Length: 301  Bit Score: 360.78  E-value: 2.01e-112
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4545 TTASEQLLRTIFELQPRESELSSHCGAPREELVKIMIDDFLDKLQDEFNLQALLNR--VERKTPFVVVALQECERMNALI 4622
Cdd:pfam18199    1 TNETNELLSTLLSLQPRSDSGGGGGGSSREEIVLELAKDILEKLPEPFDIEEAEEKypVGYEDPLNTVLLQEIERFNKLL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4623 REIKRSLRELMLGLRGELTITQEMERLDHAIFYDHVPAAWARLAYPSMLGLQSWFADLLHRIKELAGWLNDFKLPCAIWL 4702
Cdd:pfam18199   81 KVIRRSLQDLQKAIKGLVVMSSELEELANSLLNGKVPESWAKKSYPSLKPLGSWIRDLLERLKQLQDWLDDEGPPKVFWL 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4703 GGLFNPQSFLTAIMQESARKHDLPLDRMLISCDVTKK-QKDDVTLPPMEGAFVHDLYMDGASWDCQLNSIVALRPKEMLC 4781
Cdd:pfam18199  161 SGFFFPQAFLTAVLQNYARKNGWPIDKLSFDFEVTKKvSPEEVTEPPEDGVYVHGLFLEGARWDRKNGCLVESEPKELFS 240
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221459933  4782 AMPVIYIKSIVQEKQELQR-VYECPLYKTRSRGNT-YVWTFNLKTRERPSRWILGGVALLL 4840
Cdd:pfam18199  241 PLPVIHLKPVESDKKKLDEnTYECPVYKTSERHSTnFVFSVDLPTDKPPDHWILRGVALLL 301
DYN1 COG5245
Dynein, heavy chain [Cytoskeleton];
1759-4514 1.94e-108

Dynein, heavy chain [Cytoskeleton];


Pssm-ID: 227570 [Multi-domain]  Cd Length: 3164  Bit Score: 391.66  E-value: 1.94e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1759 KWIYLECIFIGSADIRAQLPADAANFERIDEDFTALLAKVQEVRVVMQVVlrHDDVLAQLLQLQHRLAVCEKALNDYLET 1838
Cdd:COG5245   626 RRLDEYLMMMSLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVSGCEAINTI--LEDVGDDLDLFYKEMDQVFMSIEKVLGL 703
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1839 KRLAFPRFyfISAADLLDILSNGNNPQVIDRHLIKLFDSIlrlqyETNTPNALGMHSKEndeyvpfvSFDPDQPAFIvcg 1918
Cdd:COG5245   704 RWREVERA--SEVEELMDRVRELENRVYSYRFFVKKIAKE-----EMKTVFSSRIQKKE--------PFSLDSEAYV--- 765
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1919 GRVELWLRAIIQQ-MRSTLHELFRRALRVFGE----KPRELWLYDWPAQVALCCSQIsWTADVNRsfgCMEEGYEGVMKE 1993
Cdd:COG5245   766 GFFRLYEKSIVIRgINRSMGRVLSQYLESVQEaleiEDGSFFVSRHRVRDGGLEKGR-GCDAWEN---CFDPPLSEYFRI 841
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 1994 LHKRQIAQLNALINLLLGELSPGDRQKImtictidvHSRDVVG--KIIASKVDNSLAFQWQSQLRHRWDDDQAGSSSGRA 2071
Cdd:COG5245   842 LEKIFPSEEGYFFDEVLKRLDPGHEIKS--------RIEEIIRmvTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSYR 913
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2072 StaiscgggdedcfanicdaefRYAYEYLGNTSRLVITPLTDRCYITLTQSLRLRLAGAtagpAGTGKTETTKDLGRALG 2151
Cdd:COG5245   914 S---------------------AEMFAKNTIPFFVFEHSMDTSQHQKLFEAVCDEVCRF----VDTENSRVYGMLVAGKG 968
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2152 VMVyvfncsEQMDYKScgNIYKGLAQTGAWGcFDEFNRIcVEVLSVVAVQVKTIQEAIKMHKTQFIFMGERISLEPSVGI 2231
Cdd:COG5245   969 RIY------DGTEPRS--RIEAGPICEEERG-TEESALL-DEISRTILVDEYLNSDEFRMLEELNSAVVEHGLKSPSTPV 1038
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2232 FITMNPgyagRTELPENLKTLFRPCAMIVPdFALICEIMlmaegfqdaRLLARKFITLYTLCKELLSKQDHYDWglRAIK 2311
Cdd:COG5245  1039 EMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSRR---------ESLDREIGAFNNEVDGIAREEDELMF--YPMF 1102
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2312 SVLvvagtlkRDDHSRPED--QVLMRALRDFNIPkivtedvpifmgLIGDLFpaldVPRKRVFEFEKTIRRAVNEIKLQP 2389
Cdd:COG5245  1103 KSL-------KAKHRMLEEktEYLNKILSITGLP------------LISDTL----RERIDTLDAEWDSFCRISESLKKY 1159
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2390 E----EGFLM-KVVQLQELLDVRHSVFIVGNAGTGKTKIWQTlretyriqklkpVC----HVLNPKALsnDELFgivnPT 2460
Cdd:COG5245  1160 EsqqvSGLDVaQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTD------------ACdylwHVKSPYVK--KKYF----DA 1221
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2461 TREWKdGLFSSIMREQANMPPGNPK-WIVLDGdidpmWIESLNTLMDDNKILTLASNERislkremRLLFEvgHLkAATP 2539
Cdd:COG5245  1222 DMELR-QFFLMFNREDMEARLADSKmEYEVER-----YVEKTKAEVSSLKLELSSVGEG-------QVVVS--NL-GSIG 1285
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2540 ATVSRAGILYINPQDLGwspyVSSWLETRVDMIERGILNALfeKYFPCLMQRQRdfrritpITDMAMIQMTCHLLECLLD 2619
Cdd:COG5245  1286 DKVGRCLVEYDSISRLS----TKGVFLDELGDTKRYLDECL--DFFSCFEEVQK-------EIDELSMVFCADALRFSAD 1352
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2620 SDEGNADGRGRGSATGGAANPHSLHHGE-----LSHEAMVMALETIFVYATVWsfgsALSQDVIIDWHREFHKWWIGEF- 2693
Cdd:COG5245  1353 LYHIVKERRFSGVLAGSDASESLGGKSIelaaiLEHKDLIVEMKRGINDVLKL----RIFGDKCRESTPRFYLISDGDLi 1428
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2694 ---KDIKLPSQGTVFDYQLNVQTlkfQPWSELAAhQSLEGqidSETPL-QNVLISTAETIRLAYFLKLLIDRNLACMLVG 2769
Cdd:COG5245  1429 kdlNERSDYEEMLIMMFNISAVI---TNNGSIAG-FELRG---ERVMLrKEVVIPTSDTGFVDSFSNEALNTLRSYIYCG 1501
                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2770 NSGCGKGAIfrqLFGQYANDQELlevavsaatagdsshqqqsgnpagAVVVRRKASSSATPLLTTVQATHFNFYTSSEIF 2849
Cdd:COG5245  1502 PPGSGKEML---MCPSLRSELIT------------------------EVKYFNFSTCTMTPSKLSVLERETEYYPNTGVV 1554
                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2850 qKMLDRPLEKKsgrcyapsgpkrrLIYFVNDLNMPEVDAYGTVQPHTIMRQFMDYRQWYDRQRLQLKDIRHCQFAACMNP 2929
Cdd:COG5245  1555 -RLYPKPVVKD-------------LVLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNP 1620
                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 2930 --TAGSFTIDPRLQRHFCVFSVAPPGEDTLHHIYGSIL-SSHLESPsqgftkEIRSIGSLLVRVGIALHRRVEYAFlPTA 3006
Cdd:COG5245  1621 gtDEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLmGSYLCFD------EFNRLSEETMSASVELYLSSKDKT-KFF 1693
                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3007 LKFHYLFNLRDLTGIYQGLMNSVGAPASAGGGgasgfggticsrpsELMRLYVHEAFRVYHDRLVDPYDIKSFKSSIRDI 3086
Cdd:COG5245  1694 LQMNYGYKPRELTRSLRAIFGYAETRIDTPDV--------------SLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDF 1759
                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3087 FKKDFEDFDEDFVFAEPLIYS---HFAQSLVDQKymplkswdSLYQLLIEAQASYNEVVGYMNLVLFEDAMIHVCRINRI 3163
Cdd:COG5245  1760 GLRAIREMIAGHIGEAEITFSmilFFGMACLLKK--------DLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRG 1831
                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3164 LESPRGNALLIGVGGSGKQTLARLAAFISSLNVSQIQIKRGFGLLDMREEIGNLYMKVGLKNLASVFLISDAQIPDESIL 3243
Cdd:COG5245  1832 LLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRDELTGDFRDSLKVQDLRRNIHGGRECLFIFESIPVESSFL 1911
                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3244 MLINDLLASGEIPELFNDDQLDTITNGIRNEVK-QSGTLDTKENCWRYFVEKVRRLLKVVLCFSPVGQTLRVRARKFPAI 3322
Cdd:COG5245  1912 EDFNPLLDNNRFLCLFSGNERIRIPENLRFVFEsTSLEKDTEATLTRVFLVYMEENLPVVFSACCSQDTSVLAGIRSPAL 1991
                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3323 ISRTAIDWFHEWPKSAL---------ESVSQKFLNEINGilEPALVPPIGCFMAYVHGTVNQISRIYLQNEKR-YNYTTP 3392
Cdd:COG5245  1992 KNRCFIDFKKLWDTEEMsqyansvetLSRDGGRVFFING--ELGVGKGALISEVFGDDAVVIEGRGFEISMIEgSLGESK 2069
                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3393 KTFLEYIFLYRKLLVDKNGEFAERIARLQSGMSKLAECARQVDTLKHQLAIQEVQLAAKNAAADKLIVIVSAESEKVKRE 3472
Cdd:COG5245  2070 IKFIGGLKVYDARCVIYIEELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKNADDALSGTPGERLEREVK 2149
                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3473 RYIASEEEKRVRIIEEDVSIKTKMCEEDLRQAEPALVAAQAALNTLNKNNLTELKSFGSPPKAVVNVCAAVMVLLASNGK 3552
Cdd:COG5245  2150 SVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAK 2229
                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3553 IPRDRSwkasklMMVRVDQFLNDLLNYNkDNIH--PNIIETL-QEYLKDPEFNPDKVVQKSVAAAGLCAWVINLHRYHQV 3629
Cdd:COG5245  2230 IWFGEQ------QSLRRDDFIRIIGKYP-DEIEfdLEARRFReARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKV 2302
                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3630 FLIVGPKQQALQDSHQELLEARERLQYLKAKINNLEAKLAEIQAEFENAVGEKQRCQREADKTAFTIDLAHRLVNGLANE 3709
Cdd:COG5245  2303 LEVKIPLREEEKRIDGEAFLVEDRLTLGKGLSSDLMTFKLRRRSYYSLDILRVHGKIADMDTVHKDVLRSIFVSEILINE 2382
                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3710 NVRWKESVQSLLAKIGTLPGDILLISSFLSYVGCFTRRYREELQHKMwlpnFRKIDPHIPHTEGV-----DTLALFSDDA 3784
Cdd:COG5245  2383 DSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIGTLGFLCRAIEFGMS----FIRISKEFRDKEIRrrqfiTEGVQKIEDF 2458
                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3785 QIAAWNNEglpmdrMSTENATILQYS-TRWPLMIDPQLQGIKWIKNRFGTDLVVL-RLRQKGFLEALEKSISQGDTVLIe 3862
Cdd:COG5245  2459 KEEACSTD------YGLENSRIRKDLqDLTAVLNDPSSKIVTSQRQMYDEKKAILgSFREMEFAFGLSQARREGSDKII- 2531
                        2170      2180      2190      2200      2210      2220      2230      2240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3863 QIEESMDTVLEPLLSRALIKKGRYLR--IGDKEIEFHASFRLILHTKMANPHYKPEMQAQTTLINFTVTPDGLEEQLLAE 3940
Cdd:COG5245  2532 GDAEALDEEIGRLIKEEFKSNLSEVKvmINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQLIQVMFVSKVLGCETEIPDA 2611
                        2250      2260      2270      2280      2290      2300      2310      2320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 3941 VVKIERPDLEQMKTEVTVQQNKFKISLKALEDELLARLASSGENVLDDHALVINLENTKRTVDEIEAKVREARVTTLQID 4020
Cdd:COG5245  2612 LEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKSRKEIEEEESESMEIEDRID 2691
                        2330      2340      2350      2360      2370      2380      2390      2400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4021 DTRNIYRSAAKRAAILYFVLTDLSRINPIYKFSLKSFMNVFRQAIAMaaesknyekrvlhlvESITLQTYRYTLRG---- 4096
Cdd:COG5245  2692 ALKSEYNASVKRLESIRVEIAMFDEKALMYNKSICELSSEFEKWRRM---------------KSKYLCAIRYMLMSsewi 2756
                        2410      2420      2430      2440      2450      2460      2470      2480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4097 LFEADKLTF-TSHMTLRILIAAEQVAKdetdfLLRFphdpttlspldfvgrsawgGIKSLTLIE-HFYGIDkdmenytkr 4174
Cdd:COG5245  2757 LDHEDRSGFiHRLDVSFLLRTKRFVST-----LLED-------------------KNYRQVLSScSLYGND--------- 2803
                        2490      2500      2510      2520      2530      2540      2550      2560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4175 wrkfMASDTPEReqFPGE----WKHRTPLQKLCIIRSlrpdrMTYAMRQFVEQTMGRSYAEIQTPPFGAIFQELNAATpa 4250
Cdd:COG5245  2804 ----VISHSCDR--FDRDvyraLKHQMDNRTHSTILT-----SNSKTNPYKEYTYNDSWAEAFEVEDSGDLYKFEEGL-- 2870
                        2570      2580      2590      2600      2610      2620      2630      2640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4251 ffilspgvdpIRDVERYGQRQGFHS---ESDTLVNiSLGQGQELLAEQAIIGALESGQQWVILQNIHLVVNWLPT-LEKL 4326
Cdd:COG5245  2871 ----------LELIVGHAPLIYAHKkslENERNVD-RLGSKENEVYAVLNSLFSRKEKSWFEVYNISLSFGWFKRyVEDV 2939
                        2650      2660      2670      2680      2690      2700      2710      2720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4327 IERIVLQSESKGESNF-RLFISAE--PAPDPQ------YHVIPqGILESSLKVVNEPPSGMAANLHKAWDNFsqdaletc 4397
Cdd:COG5245  2940 VYPIKASRVCGKVKNMwTSMVDADmlPIQLLIaidsfvSSTYP-ETGCGYADLVEIDRYPFDYTLVIACDDA-------- 3010
                        2730      2740      2750      2760      2770      2780      2790      2800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933 4398 tqeaefksilFALCYFHAVAGERRKFGPQGWNKVYPFNIGDLTISSNVLHN--YLEGSNRIPWEDLRYLFGEIMYGGHIT 4475
Cdd:COG5245  3011 ----------FYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKNilFLNHLNARKWGNNRDLIFTIVYGKKHS 3080
                        2810      2820      2830      2840
                  ....*....|....*....|....*....|....*....|
gi 221459933 4476 DDWDRRLCQTYLEELLQQdliDGDFELCPGFPAP-PNLDF 4514
Cdd:COG5245  3081 LMEDSKVVDKYCRGYGAH---ETSSQILASVPGGdPELVK 3117
AAA_9 pfam12781
ATP-binding dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. ...
3787-4005 1.71e-104

ATP-binding dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the fifth AAA+ domain subdomain AAA5S. Structural analysis reveal that it is the coiled-coil buttress interface. The relative movement of AAA5S together with the stalk (AAA4S), is coupled to rearrangements in the AAA+ ring. Closure of the AAA1 site and the rigid body movement of AAA2-AAA4 force the AAA4/AAA5 interface to close and the AAA6L subdomain to rotate towards the ring centre. The AAA5S subdomain rotates as a unit together with AAA6L, and this movement pulls the buttress relative to the stalk.


Pssm-ID: 463702 [Multi-domain]  Cd Length: 222  Bit Score: 334.41  E-value: 1.71e-104
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3787 AAWNNEGLPMDRMSTENATILQYSTRWPLMIDPQLQGIKWIKNRFG-TDLVVLRLRQKGFLEALEKSISQGDTVLIEQIE 3865
Cdd:pfam12781    1 REWNIQGLPNDELSIENAIIVTNSRRWPLLIDPQGQANKWIKNMEKdNGLKVTSFTDKNFLKTLENAIRFGKPLLIEDVG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3866 ESMDTVLEPLLSRALIKKGR--YLRIGDKEIEFHASFRLILHTKMANPHYKPEMQAQTTLINFTVTPDGLEEQLLAEVVK 3943
Cdd:pfam12781   81 EELDPILDPVLLKEIFKGGGrkVIKLGDKEVDYNPNFRLYLTTKLPNPHYPPEVAAKVTLINFTVTRSGLEDQLLGIVVK 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 221459933  3944 IERPDLEQMKTEVTVQQNKFKISLKALEDELLARLASSGENVLDDHALVINLENTKRTVDEI 4005
Cdd:pfam12781  161 KERPDLEEQRNELIKEIAENKKQLKELEDKLLELLSSSEGNILDDEELIETLETSKKTSEEI 222
AAA_8 pfam12780
P-loop containing dynein motor region D4; The 380 kDa motor unit of dynein belongs to the AAA ...
3145-3405 8.12e-96

P-loop containing dynein motor region D4; The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D4 ATP-binding region of the motor.


Pssm-ID: 463701 [Multi-domain]  Cd Length: 259  Bit Score: 311.46  E-value: 8.12e-96
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3145 MNLVLFEDAMIHVCRINRILESPRGNALLIGVGGSGKQTLARLAAFISSLNVSQIQIKRGFGLLDMREEIGNLYMKVGLK 3224
Cdd:pfam12780    1 MDLVLFRDALEHLCRICRILRQPRGHALLVGVGGSGRQSLTKLAAFIAGYELFQIEVTRNYDMNEFREDLKKVLKKAGIK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3225 NLASVFLISDAQIPDESILMLINDLLASGEIPELFNDDQLDTITNGIRNEVKQSGTLDTKENCWRYFVEKVRRLLKVVLC 3304
Cdd:pfam12780   81 GKPTVFLLSDTQIIEESFLEDINNLLNSGEVPNLFTDEEKEEIIESVRDDAKAQNIEDSREAVYNYFVKRCRNNLHIVLC 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  3305 FSPVGQTLRVRARKFPAIISRTAIDWFHEWPKSALESVSQKFLNEINgiLEPALVPPIGCFMAYVHGTVNQISRIYLQNE 3384
Cdd:pfam12780  161 MSPVGEAFRNRLRMFPSLVNCCTIDWFNEWPEEALLAVAEKFLEDIE--IPEELKSNVVKVFVYVHSSVEDMSKKFYEEL 238
                          250       260
                   ....*....|....*....|.
gi 221459933  3385 KRYNYTTPKTFLEYIFLYRKL 3405
Cdd:pfam12780  239 KRKNYVTPKSYLELLRLYKNL 259
DHC_N1 pfam08385
Dynein heavy chain, N-terminal region 1; Dynein heavy chains interact with other heavy chains ...
279-903 1.10e-89

Dynein heavy chain, N-terminal region 1; Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit. The region featured in this family includes the sequences implicated in mediating these interactions. It is thought to be flexible and not to adopt a rigid conformation.


Pssm-ID: 462457  Cd Length: 560  Bit Score: 305.66  E-value: 1.10e-89
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   279 NLLEEMFINWTTQMHDIVlersecqplgsTTQSAGHQPkyitlvsLPAQEIGFWTNRKLNLQNIYEQLRESTHKTLAQIL 358
Cdd:pfam08385    2 HALESVVIKWTKQIQDVL-----------KEDSQGRNP-------GPLAEIEFWKSREANLSSIYEQLKSPEVKKVLEIL 63
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   359 ERIESVYYEPYATAFRKLVAAWLEAQDVSLWLQPL------LRQTAAFNSVQfsnghDLVAPLVHIVHLVWSNARYYRST 432
Cdd:pfam08385   64 EAAKSSYLPAFKALDTELTDALNEAKDNVKYLKTLerpfedLEELTDPPEII-----EAIPPLMNTIRLIWSISRYYNTS 138
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   433 QRMSVLLRCICNMLVHRAAEDLELQLLFQGDADEGLLKINRTIAVLELFKQRMLDYKERYAGSQvllpalsegaaavass 512
Cdd:pfam08385  139 ERMTVLLEKISNQLIEQCKKYLSPEGIFDGDVEEALEKLQECIELLEAWKEEYKKTREKLEESP---------------- 202
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   513 pspddQQQLWRFCHEDVFGQtLDGFSLQLLELRQVFEAAVQFQQLEKleVGGLRGKILTERVREIFGEFKVLFEQWSNVD 592
Cdd:pfam08385  203 -----RERPWDFSERYIFGR-FDAFLERLEKILELFETIEQFSKLEK--IGGTKGPELEGVIEEILEEFQEAYKVFKSKT 274
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   593 IDLTATVASKWKcfrREQTLFFSRMQLLEQKLATVLLQAFEQCHSWMHLLRLTLMFGSLLQREAVRPELARVLPHILFIY 672
Cdd:pfam08385  275 YDILDVSNEGFD---DDYEEFKERIKDLERRLQAFIDQAFDDARSTESAFKLLRIFEFLLERPIIRGALEEKYTDLLQMF 351
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   673 DTEMEQLEDSvgevllgYEIRGLAALPLANNFPPIANAMMWleqhiSRcdefgakelsQLVEQLLKEKSELQTLPIQWNS 752
Cdd:pfam08385  352 KKELDAVKKI-------FDKQKYNPSPIAKNMPPVAGAIIW-----AR----------QLFRRIQEPMKRFKEELGLLKH 409
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933   753 LLSRR-----NILTTKLSNLQMKIWISWHECVDKLIIQGLDESVLSRSQD-LSQLHLNFSQVLFTLLKETKYLLALQatg 826
Cdd:pfam08385  410 AEGKKvikkyNELAKKLDEYERLIYEAWLKEVEEASEGNLKRPLLVRHPEtGKLLSVNFDPQLLALLREVKYLQKLG--- 486
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 221459933   827 slsgdlFQLPEPLLTLYGHRDAYWERRIRLIKIGEFYNGIRSGeCAAAELQLIRNDLASIDEHVEVACQQLTWRNYN 903
Cdd:pfam08385  487 ------FEIPESALNIALKEERLRPYAESLELLVRWYNKIRST-LLPVERPLLAPHLKDIDEKLEPGLTTLTWNSLG 556
AAA_lid_11 pfam18198
Dynein heavy chain AAA lid domain; This family represents the AAA lid domain found neat the ...
4403-4539 9.47e-70

Dynein heavy chain AAA lid domain; This family represents the AAA lid domain found neat the C-terminal region of dynein heavy chain.


Pssm-ID: 465676  Cd Length: 139  Bit Score: 231.57  E-value: 9.47e-70
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4403 FKSILFALCYFHAVAGERRKFGPQGWNKVYPFNIGDLTISSNVLHNYL-EGSNRIPWEDLRYLFGEIMYGGHITDDWDRR 4481
Cdd:pfam18198    1 WKKLLFGLCFFHAVVQERRKFGPLGWNIPYEFNESDLRISVQQLQMYLdEYDEKIPWDALRYLIGEINYGGRVTDDWDRR 80
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4482 LCQTYLEELLQQDLIDGDFELCPG-FPAPPNLDFEGYHSYItEMLPE-ESPLLYGLHPNA 4539
Cdd:pfam18198   81 LLNTYLEEFFNPEVLEEDFKFSPSlYYIPPDGDLEDYLEYI-ESLPLvDSPEVFGLHPNA 139
AAA_7 pfam12775
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 ...
2732-2952 4.76e-63

P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs).


Pssm-ID: 463698 [Multi-domain]  Cd Length: 179  Bit Score: 213.79  E-value: 4.76e-63
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2732 IDSETPLQNVLISTAETIRLAYFLKLLIDRNLACMLVGNSGCGKGAIFRQLFGQYaNDQELLEVAVSaatagdsshqqqs 2811
Cdd:pfam12775    1 IPPDVPFSEILVPTVDTVRYTYLLDLLLKNGKPVLLVGPTGTGKTVIIQNLLRKL-DKEKYLPLFIN------------- 66
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2812 gnpagavvvrrkasssatpllttvqathFNFYTSSEIFQKMLDRPLEKKSGRCYAPSGPKRrLIYFVNDLNMPEVDAYGT 2891
Cdd:pfam12775   67 ----------------------------FSAQTTSNQTQDIIESKLEKRRKGVYGPPGGKK-LVVFIDDLNMPAVDTYGA 117
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 221459933  2892 VQPHTIMRQFMDYRQWYDRQRLQLKDIRHCQFAACMNPTAGS-FTIDPRLQRHFCVFSVAPP 2952
Cdd:pfam12775  118 QPPIELLRQWLDYGGWYDRKKLTFKEIVDVQFVAAMGPPGGGrNDITPRLLRHFNVFNITFP 179
Dynein_heavy pfam03028
Dynein heavy chain region D6 P-loop domain; This family represents the C-terminal region of ...
4245-4371 7.59e-43

Dynein heavy chain region D6 P-loop domain; This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained.


Pssm-ID: 460782  Cd Length: 115  Bit Score: 153.37  E-value: 7.59e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  4245 NAATPAFFILSPGVDPIRDVERYGQRQGFhseSDTLVNISLGQGQELLAEQAIIGALESGQqWVILQNIHLVVNWLPTLE 4324
Cdd:pfam03028    1 SPTTPLIFILSPGSDPTADLEKLAKKLGF---GGKLHSISLGQGQGPIAEKLIEEAAKEGG-WVLLQNCHLALSWMPELE 76
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 221459933  4325 KLIERIvlqSESKGESNFRLFISAEPAPDpqyhvIPQGILESSLKVV 4371
Cdd:pfam03028   77 KILEEL---PEETLHPDFRLWLTSEPSPK-----FPISILQNSIKIT 115
Dynein_AAA_lid pfam17852
Dynein heavy chain AAA lid domain; This entry corresponds to the extension domain of AAA ...
2577-2721 1.56e-24

Dynein heavy chain AAA lid domain; This entry corresponds to the extension domain of AAA domain 5 in the dynein heavy chain. This domain is composed of 8 alpha helices.


Pssm-ID: 465532 [Multi-domain]  Cd Length: 126  Bit Score: 101.59  E-value: 1.56e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2577 LNALFEKYF-PCLMQRQRDFRRITPITDMAMIQMTCHLLECLLDsDEGNADGrgrgsatggaanphslhHGELSHEAMVM 2655
Cdd:pfam17852    1 LEPLFEWLVpPALEFVRKNCKEIVPTSDLNLVQSLCRLLESLLD-EVLEYNG-----------------VHPLSPDKLKE 62
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 221459933  2656 ALETIFVYATVWSFGSALSQDViidwHREFHKWWIGEFKDIKLP--SQGTVFDYQLNVQTLKFQPWSE 2721
Cdd:pfam17852   63 YLEKLFLFALVWSIGGTLDEDS----RKKFDEFLRELFSGLDLPppEKGTVYDYFVDLEKGEWVPWSD 126
AAA_lid_1 pfam17857
AAA+ lid domain; This domain represents the AAA lid domain from dynein heavy chain D3.
2987-3101 1.32e-20

AAA+ lid domain; This domain represents the AAA lid domain from dynein heavy chain D3.


Pssm-ID: 465535 [Multi-domain]  Cd Length: 100  Bit Score: 89.61  E-value: 1.32e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2987 LVRVGIALHRRVEYAFLPTALKFHYLFNLRDLTGIYQGLMNSvgapasaggggasgfGGTICSRPSELMRLYVHEAFRVY 3066
Cdd:pfam17857    1 LIAAALAFHQKIAATFLPTAIKFHYIFNLRDFANIFQGILFS---------------SAECLKSPLDLIRLWLHESERVY 65
                           90       100       110
                   ....*....|....*....|....*....|....*
gi 221459933  3067 HDRLVDPYDIKSFKSSIRDIFKKDFEDFDEDFVFA 3101
Cdd:pfam17857   66 GDKMVDEKDFDLFDKIQMASLKKFFDDIEDELEFA 100
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
2409-2544 4.01e-15

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 75.02  E-value: 4.01e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2409 SVFIVGNAGTGKTKIWQTLREtyRIQKlKPVCHVLNPKALSNDELFGIVNPTTR--EWKDGLFSSIMREqanmppgnpKW 2486
Cdd:pfam07728    1 GVLLVGPPGTGKTELAERLAA--ALSN-RPVFYVQLTRDTTEEDLFGRRNIDPGgaSWVDGPLVRAARE---------GE 68
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 221459933  2487 IVLDGDID---PMWIESLNTLMDDNKILTLASNERISLKREMRLLFEVGH-----LKAATPATVSR 2544
Cdd:pfam07728   69 IAVLDEINranPDVLNSLLSLLDERRLLLPDGGELVKAAPDGFRLIATMNpldrgLNELSPALRSR 134
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
2133-2253 3.82e-04

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 43.44  E-value: 3.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221459933  2133 GPAGTGKTETTKDLGRAL-GVMVYVFNCSEQM---------DYKSCG-----NIYKGLAQTGAWGCFDEFNRICVEVLSV 2197
Cdd:pfam07728    6 GPPGTGKTELAERLAAALsNRPVFYVQLTRDTteedlfgrrNIDPGGaswvdGPLVRAAREGEIAVLDEINRANPDVLNS 85
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 221459933  2198 vavqVKTIQEAIKMHktqFIFMGERISLEP-SVGIFITMNPGYAGRTELPENLKTLF 2253
Cdd:pfam07728   86 ----LLSLLDERRLL---LPDGGELVKAAPdGFRLIATMNPLDRGLNELSPALRSRF 135
PRK14140 PRK14140
heat shock protein GrpE; Provisional
3641-3693 3.71e-03

heat shock protein GrpE; Provisional


Pssm-ID: 237622 [Multi-domain]  Cd Length: 191  Bit Score: 41.91  E-value: 3.71e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 221459933 3641 QDSHQELLEARERLQYLKAKINNLEAKLAEIQAEFENavgEKQRCQREADKTA 3693
Cdd:PRK14140   33 ESEAELLDEEQAKIAELEAKLDELEERYLRLQADFEN---YKRRIQKENEAAE 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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