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Conserved domains on  [gi|115533316|ref|NP_001041180|]
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Trichohyalin [Caenorhabditis elegans]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 150-373 3.94e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 62.65  E-value: 3.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 150 EVANRM--LRDDVTQARNATEAKEE----EIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFV 223
Cdd:COG1196  197 ELERQLepLERQAEKAERYRELKEElkelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 224 QGAQLNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAANDKIEKLELR 303
Cdd:COG1196  277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 115533316 304 LKQEKPAVHNEMTVETIYIA-IETIKTTYEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:COG1196  357 EAELAEAEEALLEAEAELAEaEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 150-373 3.94e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 62.65  E-value: 3.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 150 EVANRM--LRDDVTQARNATEAKEE----EIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFV 223
Cdd:COG1196  197 ELERQLepLERQAEKAERYRELKEElkelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 224 QGAQLNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAANDKIEKLELR 303
Cdd:COG1196  277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 115533316 304 LKQEKPAVHNEMTVETIYIA-IETIKTTYEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:COG1196  357 EAELAEAEEALLEAEAELAEaEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 141-373 1.52e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 57.37  E-value: 1.52e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   141 EMANRINGLEVANRMLRDDVTQARNATEAKEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQ 220
Cdd:TIGR02168  681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   221 KFVQGAQLNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAANDKIEKL 300
Cdd:TIGR02168  761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 115533316   301 ElRLKQEKpavhnEMTVETIYIAIETIKtTYEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:TIGR02168  841 E-DLEEQI-----EELSEDIESLAAEIE-ELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 72-340 1.18e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 44.71  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   72 LLQTNnmlEAEIHRLKAALNAAQGGQQIEAQRCQMLQQELRNAQIQRDQANKRCNEIMSERRMMNDSKVEMAnringLEV 151
Cdd:pfam05483 444 LLQAR---EKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMT-----LEL 515

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  152 ANRmlrddvtqarnateakEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARqkfVQGAQLNVK 231
Cdd:pfam05483 516 KKH----------------QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCK---LDKSEENAR 576

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  232 KAEADLQLANAEIQRLLRELDS-SQQLENSSitdkRNIeEELIRKEDEIRLANYKSATLLKAANDKIEKLELRLKQEKPA 310
Cdd:pfam05483 577 SIEYEVLKKEKQMKILENKCNNlKKQIENKN----KNI-EELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQK 651

                         250       260       270
                  ....*....|....*....|....*....|
gi 115533316  311 VhnEMTVETIYIAIETIKTTYEKQLSRMEE 340
Cdd:pfam05483 652 F--EEIIDNYQKEIEDKKISEEKLLEEVEK 679
46 PHA02562
endonuclease subunit; Provisional
 172-373 7.91e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.92  E-value: 7.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 172 EEIRAITYQSEIVRQQINALN-----------ERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQLA 240
Cdd:PHA02562 181 QQIQTLDMKIDHIQQQIKTYNknieeqrkkngENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKL 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 241 NAEIQRLLRELDSSQQLEN------------SSITDKRNIEEELIRKEDEIrlanyksATLLKAANDKIEKLELRLKQek 308
Cdd:PHA02562 261 NTAAAKIKSKIEQFQKVIKmyekggvcptctQQISEGPDRITKIKDKLKEL-------QHSLEKLDTAIDELEEIMDE-- 331

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 115533316 309 pAVHNEMTVETIYIAIETIKTT---YEKQLSRMEEEIEHLKAEKlkqeqqqIMMEEEEDAVVQNLEEL 373
Cdd:PHA02562 332 -FNEQSKKLLELKNKISTNKQSlitLVDKAKKVKAAIEELQAEF-------VDNAEELAKLQDELDKI 391
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 150-373 3.94e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 62.65  E-value: 3.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 150 EVANRM--LRDDVTQARNATEAKEE----EIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFV 223
Cdd:COG1196  197 ELERQLepLERQAEKAERYRELKEElkelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 224 QGAQLNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAANDKIEKLELR 303
Cdd:COG1196  277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 115533316 304 LKQEKPAVHNEMTVETIYIA-IETIKTTYEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:COG1196  357 EAELAEAEEALLEAEAELAEaEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 101-373 2.10e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 60.34  E-value: 2.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 101 AQRCQMLQQELRNAQIQ-----RDQANKRCNEIMSERRMMNDSKVEMANRINGLEVANRMLRDDVTQARNATEAKEEEIR 175
Cdd:COG1196  212 AERYRELKEELKELEAEllllkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 176 AITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQLANAEIQRLLRELDSSQ 255
Cdd:COG1196  292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 256 QLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAANDKIEKLELRLKQEKPAVHNEMTVETIYIAIETIKTTYEKQL 335
Cdd:COG1196  372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 115533316 336 SRMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:COG1196  452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 141-373 1.52e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 57.37  E-value: 1.52e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   141 EMANRINGLEVANRMLRDDVTQARNATEAKEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQ 220
Cdd:TIGR02168  681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   221 KFVQGAQLNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAANDKIEKL 300
Cdd:TIGR02168  761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 115533316   301 ElRLKQEKpavhnEMTVETIYIAIETIKtTYEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:TIGR02168  841 E-DLEEQI-----EELSEDIESLAAEIE-ELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 79-308 7.24e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 55.33  E-value: 7.24e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  79 LEAEIHRLKAALNAAQGGQQIEAQRCQMLQQELRNAQIQRDQANKRCNEIMSERRMMNDSKVEMANRINGLEVANRMLRD 158
Cdd:COG1196  272 LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE 351

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 159 DVTQARNATEAKEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQ 238
Cdd:COG1196  352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 239 LANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAANDKIEKLELRLKQEK 308
Cdd:COG1196  432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 79-308 1.85e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 53.79  E-value: 1.85e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  79 LEAEIHRLKAALNAAQGGQQIEAQRCQMLQQELRNAQIQRDQANKRCNEIMSERRmmndskvEMANRINGLEVANRMLRD 158
Cdd:COG1196  258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR-------ELEERLEELEEELAELEE 330

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 159 DVTQARNATEAKEEEIRAITYQSEIVRQQINALNERNAALktkcETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQ 238
Cdd:COG1196  331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA----EAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 239 LANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAANDKIEKLELRLKQEK 308
Cdd:COG1196  407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 68-345 1.89e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.83  E-value: 1.89e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316    68 SASQLLQTNNMLEAEIHRLKAALNAAQGGQQIEAQRCQMLQQELRNAQIQRDQANKRCNEIMSERRMMNDSKVEMANRIN 147
Cdd:TIGR02168  692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   148 GLEVANRMLRDDVTQARNATEAKEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQ 227
Cdd:TIGR02168  772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   228 LNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATL---LKAANDKIEKLELRL 304
Cdd:TIGR02168  852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELrreLEELREKLAQLELRL 931

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 115533316   305 ---------KQEKPAVHNEMTVETI---YIAIETIKTTYEKQLSRMEEEIEHL 345
Cdd:TIGR02168  932 eglevridnLQERLSEEYSLTLEEAealENKIEDDEEEARRRLKRLENKIKEL 984
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 108-396 1.99e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.83  E-value: 1.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   108 QQELRNAQIQRDQANKRCNEIMSERRMMNDSKVEMANRINGLEVANRMLRDDVTQARNATEAKEEEIRAITYQSEIVRQQ 187
Cdd:TIGR02168  676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   188 INALNERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDK-- 265
Cdd:TIGR02168  756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIaa 835

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   266 -----RNIEEELIRKEDEIRLANYKSATLLKAANDKIEKLELRLKQEKPAVHNEMTVETIYIAIETIKTTYEKQLSRMEE 340
Cdd:TIGR02168  836 terrlEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 115533316   341 EIEHL--KAEKLKQEQQQIMMEEEedavvQNLEELPAYLKTPMRPDPTKMEGLKKTIQ 396
Cdd:TIGR02168  916 ELEELreKLAQLELRLEGLEVRID-----NLQERLSEEYSLTLEEAEALENKIEDDEE 968
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 169-373 2.31e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.76  E-value: 2.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 169 AKEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQLANAEIQRLL 248
Cdd:COG4942   17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 249 RELDS-----SQQLENSSITDKRNIEEELIRKEDEIRLanYKSATLLKAANDKIEKLELRLKQEKPAvhnemtVETIYIA 323
Cdd:COG4942   97 AELEAqkeelAELLRALYRLGRQPPLALLLSPEDFLDA--VRRLQYLKYLAPARREQAEELRADLAE------LAALRAE 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 115533316 324 IETIKTTYEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:COG4942  169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL 218
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 79-381 2.53e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.97  E-value: 2.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316    79 LEAEIHRLKAALNAAQGGQQIEAQRCQMLQQEL-------RNAQIQRDQANKRCNEIMSERRMMNDSKVEMANRINGLEV 151
Cdd:TIGR02168  237 LREELEELQEELKEAEEELEELTAELQELEEKLeelrlevSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   152 ANRMLRDDVTQARNATEAKEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKfvqgaqlNVK 231
Cdd:TIGR02168  317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS-------KVA 389

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   232 KAEADLQLANAEIQRLLRELDSsqqlenssitdkrnIEEELIRKEDEIRlanyksatllkAANDKIEKLELRLKQEKPAV 311
Cdd:TIGR02168  390 QLELQIASLNNEIERLEARLER--------------LEDRRERLQQEIE-----------ELLKKLEEAELKELQAELEE 444

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 115533316   312 HNEMTVETI--YIAIETIKTTYEKQLSRMEEEIEHLKAEkLKQEQQQIMMEEeedAVVQNLEELPAYLKTPM 381
Cdd:TIGR02168  445 LEEELEELQeeLERLEEALEELREELEEAEQALDAAERE-LAQLQARLDSLE---RLQENLEGFSEGVKALL 512
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
70-257 8.44e-05

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 45.39  E-value: 8.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  70 SQLLQTNNMLEAEIHRLKAALNAAQ----------------GGQQIEAQRCQMLQQELRNAQIQRDQANKRCNEImseRR 133
Cdd:COG3206  171 EEARKALEFLEEQLPELRKELEEAEaaleefrqknglvdlsEEAKLLLQQLSELESQLAEARAELAEAEARLAAL---RA 247

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 134 MMNDSKVEMANRINGLEVANrmlrddVTQARNATEAKEEEIRAI-TYQSEIVRQQINALNERNAALKTKCETVVAQNRQQ 212
Cdd:COG3206  248 QLGSGPDALPELLQSPVIQQ------LRAQLAELEAELAELSARyTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE 321

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 115533316 213 HEEMEARQKFVQGAQLNVKKAEADLQLANAEIQRLLRELDSSQQL 257
Cdd:COG3206  322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVAREL 366
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 72-340 1.18e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 44.71  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   72 LLQTNnmlEAEIHRLKAALNAAQGGQQIEAQRCQMLQQELRNAQIQRDQANKRCNEIMSERRMMNDSKVEMAnringLEV 151
Cdd:pfam05483 444 LLQAR---EKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMT-----LEL 515

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  152 ANRmlrddvtqarnateakEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARqkfVQGAQLNVK 231
Cdd:pfam05483 516 KKH----------------QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCK---LDKSEENAR 576

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  232 KAEADLQLANAEIQRLLRELDS-SQQLENSSitdkRNIeEELIRKEDEIRLANYKSATLLKAANDKIEKLELRLKQEKPA 310
Cdd:pfam05483 577 SIEYEVLKKEKQMKILENKCNNlKKQIENKN----KNI-EELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQK 651

                         250       260       270
                  ....*....|....*....|....*....|
gi 115533316  311 VhnEMTVETIYIAIETIKTTYEKQLSRMEE 340
Cdd:pfam05483 652 F--EEIIDNYQKEIEDKKISEEKLLEEVEK 679
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 88-310 4.30e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.44  E-value: 4.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  88 AALNAAQGGQQIEAQRcQMLQQELRNAQIQRDQANKRCNEIMSERRMMNDSKVEMANRINGLEVANRMLRDDVTQARNAT 167
Cdd:COG4942   14 AAAAQADAAAEAEAEL-EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 168 EAKEEEIRAityQSEIVRQQINAL--NERNAALK---------------TKCETVVAQNRQQHEEMEARQKFVQGAQLNV 230
Cdd:COG4942   93 AELRAELEA---QKEELAELLRALyrLGRQPPLAlllspedfldavrrlQYLKYLAPARREQAEELRADLAELAALRAEL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 231 KKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRlanyKSATLLKAANDKIEKLELRLKQEKPA 310
Cdd:COG4942  170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ----QEAEELEALIARLEAEAAAAAERTPA 245
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
65-275 4.32e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.98  E-value: 4.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   65 MGYSASQLLQTnnmLEAEIHRLKAALNAAQggQQIEAqrcqmLQQELRNAQIQRDQANKRCNEIMSERRMMndskvEMAN 144
Cdd:COG4913   604 LGFDNRAKLAA---LEAELAELEEELAEAE--ERLEA-----LEAELDALQERREALQRLAEYSWDEIDVA-----SAER 668

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  145 RINGLEVANRMLR---DDVTQARNATEAKEEEIRAityqseiVRQQINALNERNAALKTK---CETVVAQNRQQHEEMEA 218
Cdd:COG4913   669 EIAELEAELERLDassDDLAALEEQLEELEAELEE-------LEEELDELKGEIGRLEKEleqAEEELDELQDRLEAAED 741

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 115533316  219 RQKFVQGAQLNVKKAEADLQLANAEIQrllRELDSSQQLENssiTDKRNIEEELIRK 275
Cdd:COG4913   742 LARLELRALLEERFAAALGDAVERELR---ENLEERIDALR---ARLNRAEEELERA 792
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 79-373 7.86e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 42.36  E-value: 7.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316    79 LEAEIHRLKAALNAAQGGQQIEAQRCQMLQQELRNAQIQRDQANKRCNE----IMSERRMMNDSKVEMA-NRINGLEVAN 153
Cdd:TIGR02169  721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEleedLHKLEEALNDLEARLShSRIPEIQAEL 800

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   154 RMLRDDVTQARNATEAKEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQ---NRQQHEEMEARQKFVQGAQLNV 230
Cdd:TIGR02169  801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEienLNGKKEELEEELEELEAALRDL 880

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   231 KKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELirkedeirlanyksATLLKAANDKIEKLELRLKQEKPA 310
Cdd:TIGR02169  881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL--------------KAKLEALEEELSEIEDPKGEDEEI 946

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   311 VHNEMTVETIYIAIETIkttyEKQLSRME-------EEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:TIGR02169  947 PEEELSLEDVQAELQRV----EEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
46 PHA02562
endonuclease subunit; Provisional
 172-373 7.91e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.92  E-value: 7.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 172 EEIRAITYQSEIVRQQINALN-----------ERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQLA 240
Cdd:PHA02562 181 QQIQTLDMKIDHIQQQIKTYNknieeqrkkngENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKL 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 241 NAEIQRLLRELDSSQQLEN------------SSITDKRNIEEELIRKEDEIrlanyksATLLKAANDKIEKLELRLKQek 308
Cdd:PHA02562 261 NTAAAKIKSKIEQFQKVIKmyekggvcptctQQISEGPDRITKIKDKLKEL-------QHSLEKLDTAIDELEEIMDE-- 331

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 115533316 309 pAVHNEMTVETIYIAIETIKTT---YEKQLSRMEEEIEHLKAEKlkqeqqqIMMEEEEDAVVQNLEEL 373
Cdd:PHA02562 332 -FNEQSKKLLELKNKISTNKQSlitLVDKAKKVKAAIEELQAEF-------VDNAEELAKLQDELDKI 391
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
209-384 8.00e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.21  E-value: 8.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  209 NRQQHEEMEARqkfVQGAQLNVKKAEADLQLANAEIQRLLRELDSSQQLENSS--ITDKRNIEEELIRKEDEIRLanyks 286
Cdd:COG4913   608 NRAKLAALEAE---LAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdEIDVASAEREIAELEAELER----- 679

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  287 atlLKAANDKIEKLELRLKQekpavhnemtvetiyiaietikttYEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDAV 366
Cdd:COG4913   680 ---LDASSDDLAALEEQLEE------------------------LEAELEELEEELDELKGEIGRLEKELEQAEEELDEL 732

                         170
                  ....*....|....*...
gi 115533316  367 VQNLEELPAYLKTPMRPD 384
Cdd:COG4913   733 QDRLEAAEDLARLELRAL 750
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
150-373 8.36e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.93  E-value: 8.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 150 EVANRMLRDDVTQARNATEAKEEEIRAityQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQLN 229
Cdd:COG3206  156 ALAEAYLEQNLELRREEARKALEFLEE---QLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEAR 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 230 VKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAANDKIEKLELRLKQEKP 309
Cdd:COG3206  233 AELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQ 312

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 115533316 310 AVHNEMTVEtiYIAIETIKTTYEKQLSRMEEEIEHLKaeklKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:COG3206  313 RILASLEAE--LEALQAREASLQAQLAQLEARLAELP----ELEAELRRLEREVEVARELYESL 370
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 79-294 9.12e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.67  E-value: 9.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  79 LEAEIHRLKAALNAAQGGQQIEAQRCQMLQQELRNAQIQRDQANKRCNEIMSERRMMNDSKVEMANRINGLE-------- 150
Cdd:COG4942   25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRaeleaqke 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 151 -------VANRMLRDDVTQARNATEAKEEEIRAITYQSEIV---RQQINALNERNAALKTKcETVVAQNRQQHEEMEARQ 220
Cdd:COG4942  105 elaellrALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAparREQAEELRADLAELAAL-RAELEAERAELEALLAEL 183

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 115533316 221 kfvqgaqlnvKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAAN 294
Cdd:COG4942  184 ----------EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
PTZ00121 PTZ00121
MAEBL; Provisional
 100-407 1.11e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  100 EAQRCQMLQQELRNAQIQRDQANKRCNEimsERRMMNDSKVEMANRINGLEVANRMLRDDvtQARNATEAKE-EEIRait 178
Cdd:PTZ00121 1481 EAKKADEAKKKAEEAKKKADEAKKAAEA---KKKADEAKKAEEAKKADEAKKAEEAKKAD--EAKKAEEKKKaDELK--- 1552

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  179 yQSEIVRQqinALNERNAALKTKCETVVAQNRQQHEEM----EARQKFVQGAQLNVKKAEADlQLANAEIQRLLRELDSS 254
Cdd:PTZ00121 1553 -KAEELKK---AEEKKKAEEAKKAEEDKNMALRKAEEAkkaeEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELKK 1627

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  255 QQLENSSITDKRNIEEELIRKEDEIRLA----NYKSATLLKAAND---KIEKLELRLKQEKPAVHNEMTVETIYIAIETI 327
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAeeenKIKAAEEAKKAEEdkkKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  328 KTTYEKQLS-----RMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEELPAYLKTPMRPDPTKMEGLKKTIqVKIRLD 402
Cdd:PTZ00121 1708 KKKEAEEKKkaeelKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV-IEEELD 1786


                  ....*
gi 115533316  403 EEPER 407
Cdd:PTZ00121 1787 EEDEK 1791
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 68-373 2.01e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.77  E-value: 2.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   68 SASQLLQTNNMLEAEIHRLKAALNAAQGGQQIEAQRCQMLQQELRNAQIQRDQANKRCNEIMSERRMMNDSKVEmanrin 147
Cdd:TIGR04523 233 NIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ------ 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  148 gleVANRMLRDDVTQarnateaKEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQ 227
Cdd:TIGR04523 307 ---DWNKELKSELKN-------QEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK 376

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  228 LNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRL---ANYKSATLLKAANDKIEKLELRL 304
Cdd:TIGR04523 377 KENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERlkeTIIKNNSEIKDLTNQDSVKELII 456

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 115533316  305 KQ-EKPAVHNEMTVETIYIAIETIKTTYE---KQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:TIGR04523 457 KNlDNTRESLETQLKVLSRSINKIKQNLEqkqKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL 529
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
151-373 2.16e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.05  E-value: 2.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  151 VANRMLRDDVTQARnATEAKE--EEIRAITYQSEIVRQQINALnernaalktkceTVVAQNRQQHEEMEARQKFVQ--GA 226
Cdd:COG4913   213 VREYMLEEPDTFEA-ADALVEhfDDLERAHEALEDAREQIELL------------EPIRELAERYAAARERLAELEylRA 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  227 QLNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAandKIEKLELRLKQ 306
Cdd:COG4913   280 ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER---EIERLERELEE 356

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 115533316  307 -EKPAVHNEMTVETIYIAIETIKTTYEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL 373
Cdd:COG4913   357 rERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 222-420 2.25e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 2.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 222 FVQGAQLNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATL---LKAANDKIE 298
Cdd:COG4942   14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALeaeLAELEKEIA 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 299 KLELRLKQEK-----------------------------PAVHNEMTVETIYIAIETIKTTYEKQLSRMEEEIEHLKAEK 349
Cdd:COG4942   94 ELRAELEAQKeelaellralyrlgrqpplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 115533316 350 LKQEQQQIMMEEEEDAVVQNLEE---LPAYLKTPMRPDPTKMEGLKKTIQVKIRLDEEPERPARPASGPPVDSP 420
Cdd:COG4942  174 AELEALLAELEEERAALEALKAErqkLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 214-378 3.83e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 40.05  E-value: 3.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   214 EEMEARQKFVQGAQLNVKKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEI-RLANYKSATLLKA 292
Cdd:TIGR02169  695 SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELkELEARIEELEEDL 774

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   293 AN--DKIEKLELRLKQEK-PAVHNEMT-VETIYIAIETIKTTYEKQLSR-------MEEEIEHLKAEKLKQEQQQIMMEE 361
Cdd:TIGR02169  775 HKleEALNDLEARLSHSRiPEIQAELSkLEEEVSRIEARLREIEQKLNRltlekeyLEKEIQELQEQRIDLKEQIKSIEK 854

                          170
                   ....*....|....*..
gi 115533316   362 EEDAVVQNLEELPAYLK 378
Cdd:TIGR02169  855 EIENLNGKKEELEEELE 871
PTZ00121 PTZ00121
MAEBL; Provisional
 100-403 4.39e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.12  E-value: 4.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  100 EAQRCQMLQQELRNAQIQRDQANKRCNEimsERRMMNDSKVEMANRINGLEVANRMLRDDvtqaRNATEAKEEEIRAITY 179
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAEE---AKKAAEAAKAEAEAAADEAEAAEEKAEAA----EKKKEEAKKKADAAKK 1385

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  180 QSEIVRQQiNALNERNAALKTKCETV--VAQNRQQHEEMEARQKFVQGAQLNVKKAE----ADLQLANAEIQRLLRELDS 253
Cdd:PTZ00121 1386 KAEEKKKA-DEAKKKAEEDKKKADELkkAAAAKKKADEAKKKAEEKKKADEAKKKAEeakkADEAKKKAEEAKKAEEAKK 1464

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  254 SQQLENSSITDKRNIEEEliRKEDEIRL----ANYKSATLLKAANDKIEKLELRLKQEKPAVHNEMTVETIYIAIETIKT 329
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEA--KKADEAKKkaeeAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  330 TYEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDAVVQNLEEL--------PAYLKTPMRPDPTKMEGLKKTIQVKIRL 401
Cdd:PTZ00121 1543 EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAkkaeeariEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622


                  ..
gi 115533316  402 DE 403
Cdd:PTZ00121 1623 EE 1624
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
81-280 4.75e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 4.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   81 AEIHRLKAALNAAQGGQQIEA--QRCQMLQQELRNAQIQRDQANKRCNEIMSERRmmndskvEMANRINGLEVanrmlrD 158
Cdd:COG4913   272 AELEYLRAALRLWFAQRRLELleAELEELRAELARLEAELERLEARLDALREELD-------ELEAQIRGNGG------D 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  159 DVTQARNATEAKEEEIRAITYQSEIVRQQINALNERNAALKtkcETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQ 238
Cdd:COG4913   339 RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA---EEFAALRAEAAALLEALEEELEALEEALAEAEAALR 415

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 115533316  239 LANAEIQRLLRELDSsqqLENSsitdKRNIEEELIRKEDEIR 280
Cdd:COG4913   416 DLRRELRELEAEIAS---LERR----KSNIPARLLALRDALA 450
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
163-343 5.09e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.51  E-value: 5.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  163 ARNATEAKEEEIRAItyqseivRQQINALNERNAALKTKCETVVAQNR--QQHEEMEARQKFVQGAQL----------NV 230
Cdd:COG4913   608 NRAKLAALEAELAEL-------EEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEReiaeleaeleRL 680

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  231 KKAEADLQLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLAnykSATLLKAANDKIEKLELRLKQEKPA 310
Cdd:COG4913   681 DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL---QDRLEAAEDLARLELRALLEERFAA 757

                         170       180       190
                  ....*....|....*....|....*....|...
gi 115533316  311 VHNEMTVETIYIAIETIKTTYEKQLSRMEEEIE 343
Cdd:COG4913   758 ALGDAVERELRENLEERIDALRARLNRAEEELE 790
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
158-356 5.46e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 39.37  E-value: 5.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 158 DDVTQARNATEAKEEEIRAITYQSEIVRQQINALNERNAALKTKcetvvaqnRQQHEEMEARQKFVQGaqlnVKKAEADL 237
Cdd:COG4717   74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREE--------LEKLEKLLQLLPLYQE----LEALEAEL 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 238 QLANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRLANYKSATLLKAANDKIEKLELRLKQekpavhnemtv 317
Cdd:COG4717  142 AELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAE----------- 210

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 115533316 318 etiyiaIETIKTTYEKQLSRMEEEIEHLKAEKLKQEQQQ 356
Cdd:COG4717  211 ------LEEELEEAQEELEELEEELEQLENELEAAALEE 243
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 167-363 7.19e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 39.18  E-value: 7.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   167 TEAKEEEIRAITYQSEIVRQQINALNERNAALKTKCEtvvaqnrQQHEEMEARQKFVQGAQLNVKKAEADLQLANAEIQR 246
Cdd:pfam02463  668 LSELTKELLEIQELQEKAESELAKEEILRRQLEIKKK-------EQREKEELKKLKLEAEELLADRVQEAQDKINEELKL 740

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316   247 LLRELDSSQQLENSSITDKRNIEEELI-RKEDEIRLANYKSATLLKAANDKIEKLELRLKQEKPAVHNEMTVETIYIAIE 325
Cdd:pfam02463  741 LKQKIDEEEEEEEKSRLKKEEKEEEKSeLSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEE 820

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 115533316   326 TIKTtyEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEE 363
Cdd:pfam02463  821 QLLI--EQEEKIKEEELEELALELKEEQKLEKLAEEEL 856
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 162-365 7.27e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 38.66  E-value: 7.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 162 QARNATEAKEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQLAN 241
Cdd:COG3883   13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 242 AEIQRLLRELDSSQQLENSSitdkrNIEEELIRKE--DEIRLANYKSATLLKAANDKIEKLELRLKQEKPAVHNEMTvet 319
Cdd:COG3883   93 RALYRSGGSVSYLDVLLGSE-----SFSDFLDRLSalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKA--- 164

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 115533316 320 iyiAIETIKTTYEKQLSRMEEEIEHLKAEKLKQEQQQIMMEEEEDA 365
Cdd:COG3883  165 ---ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
79-363 9.42e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 38.87  E-value: 9.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316  79 LEAEIHRLKAALNAAqggqqiEAQRcQMLQQELRNAQIQRDQANKRCNEIMSERRMMNDSKVEMANRINGLEVANRMLRD 158
Cdd:PRK02224 256 LEAEIEDLRETIAET------ERER-EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 159 DVTQARNATEAKEEEIRAITYQSEIVRQQINALNERNAALKTKCETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQ 238
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115533316 239 LANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKE------------------------DEIRLANYKSATLLKAAN 294
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEalleagkcpecgqpvegsphvetiEEDRERVEELEAELEDLE 488

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 115533316 295 DKIEKLELRLKQEKPAVHNEMTVETIYIAIETIKTTYEKQLSRMEEEIEhlKAEKLKQEQQQIMMEEEE 363
Cdd:PRK02224 489 EEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRE--RAEELRERAAELEAEAEE 555
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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